ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5114    suspect: LH   J     KOG4813  Translation, ribosomal structure and biogenesis                Translation initiation factor eIF3, p35 subunit

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5114 1751471  1752301 277  
         (277 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YLR192c [J] KOG4813 Translation initiation factor eIF3 p35 subunit    214   1e-55

>YLR192c [J] KOG4813 Translation initiation factor eIF3 p35 subunit
          Length = 265

 Score =  214 bits (545), Expect = 1e-55
 Identities = 124/256 (48%), Positives = 153/256 (59%), Gaps = 11/256 (4%)

Query: 1   MSWDDEDFAVPSGSKEKPVLNSWDDEFAENDDEPVLESWEDEETXXXXXXXXXXXXXXXX 60
           MSWDDE      G+ +  +++SWD E    DDEPV++SW+ EE                 
Sbjct: 1   MSWDDEAINGSMGNDDAVLMDSWDAEIG--DDEPVMQSWDAEEEEKKPAPKPKKEQPKKV 58

Query: 61  XXXXXXXXXXXXXXXNTMLDIDTLDDKTRKELLRKAELESDLNNAADLFGGLGVXXXXXX 120
                            +LDIDTLD+KTRKEL++KAE+ESDLNNAADLF GLGV      
Sbjct: 59  KKGKESSAD------RALLDIDTLDEKTRKELIKKAEMESDLNNAADLFAGLGVAEEHPR 112

Query: 121 XXXXXXXXXXXXXXQPAALTKDTPIQSHPLFSDLETKKDYQELRKALATAITSTSNKSLL 180
                         +PA  TKDTPI++HPLF+  ETK++YQ+LRKAL  AIT  + KS L
Sbjct: 113 ARALQKEQEEQALKRPA-FTKDTPIETHPLFN-AETKREYQDLRKALTAAITPMNKKSPL 170

Query: 181 NYSGGLAIDLIRDISKPMTVENIRQTIATLNVLMKDKEREERQARLXXXXXXXXXXXXXX 240
           NYS  LAIDLIRD++KPM++E+IRQT+ATLNVL+KDKEREERQARL              
Sbjct: 171 NYSSSLAIDLIRDVAKPMSIESIRQTVATLNVLIKDKEREERQARL-ARVRGGTATGGAG 229

Query: 241 XXXXXXRANLGGAFKK 256
                 + NLGGAFKK
Sbjct: 230 KKKVKGKTNLGGAFKK 245


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,982,377
Number of Sequences: 60738
Number of extensions: 343339
Number of successful extensions: 985
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 3
length of query: 277
length of database: 30,389,216
effective HSP length: 105
effective length of query: 172
effective length of database: 24,011,726
effective search space: 4130016872
effective search space used: 4130016872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)