ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5151    good          O     KOG3457  Posttranslational modification, protein turnover, chaperones   Sec61 protein translocation complex, beta subunit

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5151 1765507 1765244 -88  
         (88 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER019c-a [O] KOG3457 Sec61 protein translocation complex beta s...    89   1e-18
SPBC2G2.03c [O] KOG3457 Sec61 protein translocation complex beta...    59   2e-09
YER087c-a [O] KOG3457 Sec61 protein translocation complex beta s...    51   3e-07

>YER019c-a [O] KOG3457 Sec61 protein translocation complex beta subunit
          Length = 88

 Score = 88.6 bits (218), Expect = 1e-18
 Identities = 44/54 (81%), Positives = 46/54 (84%)

Query: 6  PGGQRTLQKRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVD 59
          PGGQR LQKRR AQ  KEK+A QTP S RQAG+GGSSSSILKLYTDEANG RVD
Sbjct: 7  PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVD 60


>SPBC2G2.03c [O] KOG3457 Sec61 protein translocation complex beta subunit
          Length = 102

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 3  SSVPGGQRTLQKRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDP 60
          +S PGG ++  +RR A  +  K++N  PA  R AG  GS+ ++LKLYTDEA+G +VDP
Sbjct: 15 ASAPGGPKSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLKLYTDEASGFKVDP 72


>YER087c-a [O] KOG3457 Sec61 protein translocation complex beta subunit
          Length = 82

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 6  PGGQRTLQKRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPXXXXX 65
          PGGQRTLQKR+    QK        ++P++     S++SILK+Y+DEA GLRVDP     
Sbjct: 7  PGGQRTLQKRKQGSSQKV-----AASAPKKNT--NSNNSILKIYSDEATGLRVDPLVVLF 59

Query: 66 XXXXXXXXXXXXXXXXXXSGKIF 88
                            +GK+F
Sbjct: 60 LAVGFIFSVVALHVISKVAGKLF 82


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.308    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,960,916
Number of Sequences: 60738
Number of extensions: 125723
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 3
length of query: 88
length of database: 30,389,216
effective HSP length: 64
effective length of query: 24
effective length of database: 26,501,984
effective search space: 636047616
effective search space used: 636047616
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)