ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5164 good A KOG0108 RNA processing and modification mRNA cleavage and polyadenylation factor I complex, subunit RNA15
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5164 1766853  1768628 592  
         (592 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBL051c [A] KOG0108 mRNA cleavage and polyadenylation factor I c...   374   e-103
SPAC12G12.03 [A] KOG0108 mRNA cleavage and polyadenylation facto...   123   9e-28
SPBC16A3.18 [A] KOG0108 mRNA cleavage and polyadenylation factor...   115   1e-25

>YBL051c [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
           subunit RNA15
          Length = 668

 Score =  374 bits (959), Expect = e-103
 Identities = 242/598 (40%), Positives = 295/598 (48%), Gaps = 47/598 (7%)

Query: 32  EELIPTAIVIKNIPFAIKKEQLLEVIAKMDLPLPYAFNYHFDNGVFRGLAFANFXXXXXX 91
           +++IP AIVIKNIPFAIKKEQLL++I +MDLPLPYAFNYHFDNG+FRGLAFANF      
Sbjct: 80  DDVIPNAIVIKNIPFAIKKEQLLDIIEEMDLPLPYAFNYHFDNGIFRGLAFANFTTPEET 139

Query: 92  XXVVQSLNGKEIGGRKLRVEYKKMLPQAXXXXXXXXXXXXXGQLEEQHRSMSNISLQSLX 151
             V+ SLNGKEI GRKL+VEYKKMLPQA             GQLEEQHRS SN+SL SL 
Sbjct: 140 TQVITSLNGKEISGRKLKVEYKKMLPQAERERIEREKREKRGQLEEQHRSSSNLSLDSLS 199

Query: 152 XXXXXXXXXXXXXXXXXXXXXXXXXXXXADSAAPGSVSMGTVXXXXXXXXXXXXXXXXAQ 211
                                        +S    +++  +                 AQ
Sbjct: 200 KMSGSGNNNTSNNQLFSTLMNGINANSMMNSPMNNTINNNSSNNNNSGNIILNQPSLSAQ 259

Query: 212 NTAASMSMLSMQGLPQMS-ERFYXXXXXXXXXXXXXXXXDFNDPDTLEIYSQLLLFKDRE 270
           +T++S+   ++    QMS ERFY                DFNDPDTLEIYSQLLLFKDRE
Sbjct: 260 HTSSSLYQTNVNNQAQMSTERFYAPLPSTSTLPLPPQQLDFNDPDTLEIYSQLLLFKDRE 319

Query: 271 KRYYELAYPIGVSANHKRVINVLCSFLGLIEVYDPSFIIIRRKSLDHATLQTHLQQQGQM 330
           K YYELAYP+G+SA+HKR+INVLCS+LGL+EVYDP FIIIRRK LDHA LQ+HLQQQGQM
Sbjct: 320 KYYYELAYPMGISASHKRIINVLCSYLGLVEVYDPRFIIIRRKILDHANLQSHLQQQGQM 379

Query: 331 DMMQPLQPXXXXXXXXXXXXYTSLLQAHASMSHGILSQP-----------NASKNLGN-- 377
               PLQP            YTSLLQAHA+ +   +S             N++   GN  
Sbjct: 380 TSAHPLQPNSTGGSMNRSQSYTSLLQAHAAAAANSISNQAVNNSSNSNTINSNNGNGNNV 439

Query: 378 -LQGTSTQSAGPVXXXXXXX-------------XXXXXXXXXQPPSPGQPLMQTSSSLHQ 423
            +   S  S   +                             QP  P     Q   S  Q
Sbjct: 440 IINNNSASSTPKISSQGQFSMQPTLTSPKMNIHHSSQYNSADQPQQPQPQTQQNVQSAAQ 499

Query: 424 DNGASLRNQVT-TPSIMQNRIPSGFQTNTQQHMTSSSLLRXXXXX--XXXXXXXXXXXXT 480
              + LR Q T TPS   +RIPSG+  N  Q  + + LLR                    
Sbjct: 500 QQQSFLRQQATLTPS---SRIPSGYSANHYQINSVNPLLRNSQISPPNSQIPINSQTLSQ 556

Query: 481 VRVPSLYQSQPGTPGINEN-RFAQLTXXXXXXXXXXXXXXXXXXXHTSESIHSNYSVHSI 539
            + P+  Q+Q   P   +N   +                      HT+ S+HSN+S  S 
Sbjct: 557 AQPPAQSQTQQRVPVAYQNASLSSQQLYNLNGPSSANSQSQLLPQHTNGSVHSNFSYQSY 616

Query: 540 HD------YVPGSNNQGYQSGSISASGDMLDDGLTRSLSGLDLGKRHGTSATNSNNLW 591
           HD      +   S +  Y+S S S   D L+ GL RSLSGLDL  +      N  NLW
Sbjct: 617 HDESMLSAHNLNSADLIYKSLSHSGLDDGLEQGLNRSLSGLDLQNQ------NKKNLW 668


>SPAC12G12.03 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
           subunit RNA15
          Length = 576

 Score =  123 bits (308), Expect = 9e-28
 Identities = 60/88 (68%), Positives = 68/88 (77%)

Query: 32  EELIPTAIVIKNIPFAIKKEQLLEVIAKMDLPLPYAFNYHFDNGVFRGLAFANFXXXXXX 91
           EE IPTAIVIKNIPF++KKE L +V   +D+P PYAFNYHFDNGVFRGLAFANF      
Sbjct: 227 EETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEA 286

Query: 92  XXVVQSLNGKEIGGRKLRVEYKKMLPQA 119
             VVQ LNG EI GR+LRVE+K+ LP A
Sbjct: 287 KTVVQVLNGYEITGRRLRVEWKRQLPPA 314


>SPBC16A3.18 [A] KOG0108 mRNA cleavage and polyadenylation factor I complex
           subunit RNA15
          Length = 490

 Score =  115 bits (289), Expect = 1e-25
 Identities = 53/88 (60%), Positives = 69/88 (78%)

Query: 32  EELIPTAIVIKNIPFAIKKEQLLEVIAKMDLPLPYAFNYHFDNGVFRGLAFANFXXXXXX 91
           E+ IPTAIV+KNIPF+++K+ LL+   ++ +P PYAFNYH+DNG+FRGLAFANF      
Sbjct: 197 EDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEA 256

Query: 92  XXVVQSLNGKEIGGRKLRVEYKKMLPQA 119
             VVQ+LNG EI GR+LRVE+K+ LP A
Sbjct: 257 QVVVQTLNGYEINGRRLRVEWKRQLPAA 284


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,324,360
Number of Sequences: 60738
Number of extensions: 773352
Number of successful extensions: 1511
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 5
length of query: 592
length of database: 30,389,216
effective HSP length: 112
effective length of query: 480
effective length of database: 23,586,560
effective search space: 11321548800
effective search space used: 11321548800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)