ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5247 good O KOG0180 Posttranslational modification, protein turnover, chaperones 20S proteasome, regulatory subunit beta type PSMB3/PUP3
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5247 1796102 1795488 -205
(205 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER094c [O] KOG0180 20S proteasome regulatory subunit beta type ... 350 1e-96
SPCC63.12c [O] KOG0180 20S proteasome regulatory subunit beta ty... 251 6e-67
7299121 [O] KOG0180 20S proteasome regulatory subunit beta type ... 213 2e-55
Hs4506197 [O] KOG0180 20S proteasome regulatory subunit beta typ... 207 6e-54
At1g21720 [O] KOG0180 20S proteasome regulatory subunit beta typ... 198 4e-51
At1g77440 [O] KOG0180 20S proteasome regulatory subunit beta typ... 189 3e-48
CE07571 [O] KOG0180 20S proteasome regulatory subunit beta type ... 161 5e-40
ECU02g0340 [O] KOG0180 20S proteasome regulatory subunit beta ty... 160 9e-40
7294080 [O] KOG0179 20S proteasome regulatory subunit beta type ... 73 3e-13
CE26745 [O] KOG0179 20S proteasome regulatory subunit beta type ... 69 6e-12
Hs4506193 [O] KOG0179 20S proteasome regulatory subunit beta typ... 68 8e-12
ECU07g1420 [O] KOG0179 20S proteasome regulatory subunit beta ty... 62 5e-10
SPAC22F8.06 [O] KOG0179 20S proteasome regulatory subunit beta t... 60 2e-09
At3g60820 [O] KOG0179 20S proteasome regulatory subunit beta typ... 58 8e-09
Hs22059276 [O] KOG0180 20S proteasome regulatory subunit beta ty... 57 2e-08
ECU10g1450 [O] KOG0174 20S proteasome regulatory subunit beta ty... 52 4e-07
YBL041w [O] KOG0179 20S proteasome regulatory subunit beta type ... 51 1e-06
SPBC4C3.10c [O] KOG0174 20S proteasome regulatory subunit beta t... 50 2e-06
>YER094c [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 205
Score = 350 bits (897), Expect = 1e-96
Identities = 171/185 (92%), Positives = 179/185 (96%)
Query: 1 MSDPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYGHVFLGLTGLATDV 60
MSDPSSINGGIVVAMTGKDCVAI CDLRLGSQSLGV+N FEKIFHYGHVFLG+TGLATDV
Sbjct: 1 MSDPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDV 60
Query: 61 LTLSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPF 120
TL+E FRYKTNLYKL+E+R IEPETFTQLVS+SLYE+RFGPYFVGPVVAGINSKSGKPF
Sbjct: 61 TTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPF 120
Query: 121 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDAL 180
IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE +DLFETISQALLNAADRDAL
Sbjct: 121 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDAL 180
Query: 181 SGWGA 185
SGWGA
Sbjct: 181 SGWGA 185
>SPCC63.12c [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 204
Score = 251 bits (640), Expect = 6e-67
Identities = 126/178 (70%), Positives = 143/178 (79%), Gaps = 2/178 (1%)
Query: 8 NGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYGH-VFLGLTGLATDVLTLSES 66
NGG VAM GK+CVAI DLRLG QS+ + NNF K+F G +LGLTGLATDV TL E
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 67 FRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
FRYK NLYK RE+R I+P+TF LVS++LYEKRFGPYF PVVAG+ S PFI GFD
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGV-SNDNTPFICGFDS 125
Query: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWG 184
IGCID A+DFIVSGTA++QL+GMCES+YEPNLE DDLFETISQALLNA DRD +SGWG
Sbjct: 126 IGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWG 183
>7299121 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 205
Score = 213 bits (541), Expect = 2e-55
Identities = 101/199 (50%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
Query: 8 NGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATDVLTLSES 66
NGG VVAM GKDCVAI D R G Q+ ++ +F+K+FH G +FLGLTGL TD+LT+ +
Sbjct: 7 NGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDR 66
Query: 67 FRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
++ NLY+ RE+R + P+ F+ ++S+ LYE RFGPYF+ PVVAG++ K+ +PFI DL
Sbjct: 67 LMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPFICNMDL 126
Query: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWGAX 186
IGC + DF+V+GT ++QL+GMCE+L++P+LE D LFE I+Q+++NA DRDA+SGWGA
Sbjct: 127 IGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGAT 186
Query: 187 XXXXXXXXXXXXXXXTRQD 205
TR D
Sbjct: 187 VYIIEKDKITERTLKTRMD 205
>Hs4506197 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 205
Score = 207 bits (528), Expect = 6e-54
Identities = 100/180 (55%), Positives = 134/180 (73%), Gaps = 1/180 (0%)
Query: 6 SINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATDVLTLS 64
S NGG V+AM GK+CVAI D R G Q+ V +F+KIF G +++GL GLATDV T++
Sbjct: 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVA 64
Query: 65 ESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGF 124
+ +++ NLY+L+E R I+P T +V+ LYEKRFGPY+ PV+AG++ K+ KPFI
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 125 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWG 184
DLIGC DF+VSGT ++Q++GMCESL+EPN++ D LFETISQA+LNA DRDA+SG G
Sbjct: 125 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 184
>At1g21720 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 204
Score = 198 bits (504), Expect = 4e-51
Identities = 100/178 (56%), Positives = 130/178 (72%), Gaps = 2/178 (1%)
Query: 8 NGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFH-YGHVFLGLTGLATDVLTLSES 66
NG VVAM GK+C AI D RLG Q +A +F++I + VF+GL+GLATDV TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 67 FRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
++ LY+LRE+R ++PETF LVS LYEKRFGPY PV+AG+ KPFI D
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDD-KPFICTMDS 125
Query: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWG 184
IG + AKDF+VSGTAS+ L+G CE++Y+P++EA++LFETISQALL++ DRD LSGWG
Sbjct: 126 IGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWG 183
>At1g77440 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 191
Score = 189 bits (479), Expect = 3e-48
Identities = 93/171 (54%), Positives = 127/171 (73%), Gaps = 2/171 (1%)
Query: 15 MTGKDCVAIGCDLRLGSQSLGVANNFEKIFH-YGHVFLGLTGLATDVLTLSESFRYKTNL 73
M GK+C AI D RLG Q +A +F++I + H+F+GL+GLATDV TL + ++ L
Sbjct: 1 MVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKL 60
Query: 74 YKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEA 133
Y+LRE+R ++PETF LVS LYEKRFGP+ PV+AG+ + KPFI D IG + A
Sbjct: 61 YQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDN-KPFICTMDSIGAKELA 119
Query: 134 KDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWG 184
KDF+VSGTAS+ L+G CE++++P++EA++LFETISQALL++ DRD LSGWG
Sbjct: 120 KDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWG 170
>CE07571 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 204
Score = 161 bits (408), Expect = 5e-40
Identities = 75/181 (41%), Positives = 116/181 (63%), Gaps = 2/181 (1%)
Query: 6 SINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHY-GHVFLGLTGLATDVLTLS 64
S GG VVAM G +CV I DLR+G Q +A + +K+ V++GL G +D T+
Sbjct: 5 SYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVL 64
Query: 65 ESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGF 124
E ++ NLY+LRE+R I+P+ ++++S Y+ RFG YF P+VAG++ + KP+I
Sbjct: 65 EKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPYICCM 123
Query: 125 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWG 184
D IGC+ +DF+ GT + L G+CE+ + N++ D+LFE +Q++L+ +RDA SGWG
Sbjct: 124 DTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWG 183
Query: 185 A 185
A
Sbjct: 184 A 184
>ECU02g0340 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 205
Score = 160 bits (406), Expect = 9e-40
Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 2/186 (1%)
Query: 1 MSDPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATD 59
MSD + GG ++AM VAI CD RLG S+ V+ +F +I G +++GL D
Sbjct: 1 MSDTETFYGGSILAMASSKGVAIMCDKRLGMSSITVSKDFTRIHRIGPRLYVGLPAFVPD 60
Query: 60 VLTLSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKP 119
L R NL++L R +EPE + ++S LY KR PY P+VAG+ S GKP
Sbjct: 61 TQVLLRKIRKNYNLFRLEHQREMEPEELSSMISFLLYSKRETPYITAPIVAGLTS-DGKP 119
Query: 120 FIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDA 179
+I+G D IG I DF+ GTA L G+CE+LY P+++ ++LF T QA LNA DRDA
Sbjct: 120 YISGMDCIGSIASPGDFVAVGTADKNLMGICEALYRPDMDEENLFVTCVQAFLNAIDRDA 179
Query: 180 LSGWGA 185
LSGWGA
Sbjct: 180 LSGWGA 185
>7294080 [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 235
Score = 72.8 bits (177), Expect = 3e-13
Identities = 54/191 (28%), Positives = 90/191 (46%), Gaps = 14/191 (7%)
Query: 4 PSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATDVLT 62
P NGG +VA+ G D I D RL S + K+F LG G D L+
Sbjct: 24 PYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLS 83
Query: 63 LSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIA 122
L+ S + + Y+ R + E Q++S ++Y +RF PY+V ++AGI+++ GK +
Sbjct: 84 LTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNE-GKGVVY 142
Query: 123 GFDLIGCIDEAKDFIVSGTASDQLFGMCES-LYEPNLEADD----------LFETISQAL 171
+D IG ++A + GTA L + ++ + N+ +D S
Sbjct: 143 SYDPIGHCEKA-TYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTF 201
Query: 172 LNAADRDALSG 182
++AA+RD +G
Sbjct: 202 ISAAERDIYTG 212
>CE26745 [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 258
Score = 68.6 bits (166), Expect = 6e-12
Identities = 49/192 (25%), Positives = 89/192 (45%), Gaps = 14/192 (7%)
Query: 3 DPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGV-ANNFEKI-FHYGHVFLGLTGLATDV 60
+P S+ GG A++G++ + D R+ + + + EKI ++ L +G DV
Sbjct: 45 NPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDV 104
Query: 61 LTLSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPF 120
L L + + + + Y+ + + +L+S +LY +RF PY+ G ++AGI+ + GK
Sbjct: 105 LQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGID-EHGKGA 163
Query: 121 IAGFDLIGCIDEAKDFIVSGTASDQLF----------GMCESLYEPNLEADDLFETISQA 170
+ +D IGCI E + SG A + + E P L D + +
Sbjct: 164 VFSYDPIGCI-ERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLMKDS 222
Query: 171 LLNAADRDALSG 182
AA+R+ +G
Sbjct: 223 FRGAAEREISTG 234
>Hs4506193 [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 241
Score = 68.2 bits (165), Expect = 8e-12
Identities = 47/189 (24%), Positives = 84/189 (43%), Gaps = 12/189 (6%)
Query: 4 PSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHY-GHVFLGLTGLATDVLT 62
P NGG ++A+ G+D + D RL + K + +G +G D LT
Sbjct: 32 PYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLT 91
Query: 63 LSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIA 122
L++ + +YK ++ + ++ST LY +RF PY+V ++ G++ + GK +
Sbjct: 92 LTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLD-EEGKGAVY 150
Query: 123 GFDLIGCIDEAKDFIVSGTASDQL---------FGMCESLYEPNLEADDLFETISQALLN 173
FD +G + F G+AS L F +++ L D + ++
Sbjct: 151 SFDPVGSY-QRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 209
Query: 174 AADRDALSG 182
AA+RD +G
Sbjct: 210 AAERDVYTG 218
>ECU07g1420 [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 290
Score = 62.0 bits (149), Expect = 5e-10
Identities = 48/185 (25%), Positives = 77/185 (40%), Gaps = 14/185 (7%)
Query: 3 DPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYGHVFLGLTGLATDVLT 62
DP N G + + D + + D R S + + KIF G L TG D
Sbjct: 84 DPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQVGDFLLTGTGFYADTHE 143
Query: 63 LSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIA 122
+ Y+ Y++ D I + L+S LY KRF PY+ V++G + GKP++
Sbjct: 144 VYVKMVYEIRQYEV--DDSINIHSAANLLSKILYSKRFFPYYSFCVLSGF--EKGKPYVY 199
Query: 123 GFDLIGCIDEAKDFIVSGTASDQLFGMCESLY---------EPNLEADDLFETISQALLN 173
+D IG + SG+ + + +S E L +D + +A +
Sbjct: 200 SYDPIGSFGSV-TCVCSGSGRSMIQPLLDSFIDKKNWNNAEETQLSQEDCIRLVVKAFNS 258
Query: 174 AADRD 178
AA+RD
Sbjct: 259 AAERD 263
>SPAC22F8.06 [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 225
Score = 60.1 bits (144), Expect = 2e-09
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 3 DPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHY--GHVFLGLTGLATDV 60
DP NGG VA+ G + D R + F+ H + +G +G D
Sbjct: 7 DPYVQNGGTTVAIAGDGFAILAGDTR-SVNGYNINTRFQPRVHEVGDDLVIGASGFEADA 65
Query: 61 LTLSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPF 120
L L + + + +LY +R + ++ +V T LY KRF PY+V VAGI+ K GK
Sbjct: 66 LALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGID-KEGKGE 124
Query: 121 IAGFDLIG 128
I FD +G
Sbjct: 125 IYSFDPVG 132
>At3g60820 [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 223
Score = 58.2 bits (139), Expect = 8e-09
Identities = 35/126 (27%), Positives = 62/126 (48%), Gaps = 2/126 (1%)
Query: 4 PSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHYG-HVFLGLTGLATDVLT 62
P NGG VA+ G D I D R+ + ++ ++ KI L +G DV
Sbjct: 10 PYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKA 69
Query: 63 LSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIA 122
L + + + +Y+ + ++ + QL+S +LY KRF PY+ V+ G++ + GK +
Sbjct: 70 LQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLD-EEGKGCVF 128
Query: 123 GFDLIG 128
+D +G
Sbjct: 129 TYDAVG 134
>Hs22059276 [O] KOG0180 20S proteasome regulatory subunit beta type PSMB3/PUP3
Length = 128
Score = 57.0 bits (136), Expect = 2e-08
Identities = 25/41 (60%), Positives = 34/41 (81%)
Query: 144 DQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSGWG 184
+Q++ MCESL+E N++ + LFETI QA+LNA DRDA+SG G
Sbjct: 67 EQIYEMCESLWECNMDPEQLFETIFQAMLNAVDRDAVSGMG 107
>ECU10g1450 [O] KOG0174 20S proteasome regulatory subunit beta type
PSMB6/PSMB9/PRE3
Length = 203
Score = 52.4 bits (124), Expect = 4e-07
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 7/183 (3%)
Query: 1 MSDPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFEKIFHY-GHVFLGLTGLATD 59
MS+ + G ++A+ D V IG D R + + +K+ +F+ +G + D
Sbjct: 2 MSNEKEMTGTTIIAIKYDDGVLIGADSRTSMGAYVSSRVTDKLTQITDKIFVCRSGSSAD 61
Query: 60 VLTLSESFRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKP 119
+S R ++Y ED + + L S +YE G +VAG + K P
Sbjct: 62 TQMISSYLRMYLSMYSQLEDSIPQVQRAAALASKIIYENP--SLLAGLIVAGYDDK---P 116
Query: 120 FIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDA 179
+ L G + E +D+ + G+ S ++G C+ + + ++ + A+ A +RD
Sbjct: 117 RVFNISLGGSLTE-RDWAIGGSGSAFIYGYCDVNWRSGMSLEEGIRFVRNAVSCAINRDN 175
Query: 180 LSG 182
SG
Sbjct: 176 ASG 178
>YBL041w [O] KOG0179 20S proteasome regulatory subunit beta type PSMB1/PRE7
Length = 241
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/129 (26%), Positives = 62/129 (47%), Gaps = 5/129 (3%)
Query: 3 DPSSINGGIVVAMTGKDCVAIGCDLRLGSQSLGVANNFE-KIFHYG-HVFLGLTGLATDV 60
+P NGG ++ + G+D + D R + + +E K+F G ++ + G A D
Sbjct: 22 NPYGDNGGTILGIAGEDFAVLAGDTR-NITDYSINSRYEPKVFDCGDNIVMSANGFAADG 80
Query: 61 LTLSESFRYKTNLYKL-REDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKP 119
L + F+ Y D+ + + + + LY KRF PY+V ++AG++ + GK
Sbjct: 81 DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD-EDGKG 139
Query: 120 FIAGFDLIG 128
+ FD +G
Sbjct: 140 AVYSFDPVG 148
>SPBC4C3.10c [O] KOG0174 20S proteasome regulatory subunit beta type
PSMB6/PSMB9/PRE3
Length = 226
Score = 50.1 bits (118), Expect = 2e-06
Identities = 40/176 (22%), Positives = 82/176 (45%), Gaps = 6/176 (3%)
Query: 9 GGIVVAMTGKDCVAIGCDLRLGSQSLGVANNF-EKIFHY-GHVFLGLTGLATDVLTLSES 66
G + A+ KD V + D R + +AN +K+ +++ +G A D T+++
Sbjct: 24 GTTITALRYKDGVILAADSRT-TMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADL 82
Query: 67 FRYKTNLYKLREDRPIEPETFTQLVSTSLYEKRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
+Y ++Y+++ T L S Y+ + G +VAG + K+G + L
Sbjct: 83 LKYYLSMYRIQFGHDPSVHTAATLASEMCYQNK-NMLSAGLIVAGYDEKTGGD-VYSIPL 140
Query: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEADDLFETISQALLNAADRDALSG 182
G + + + + G+ S ++G C++ + N+ ++ E + A+ A +RD SG
Sbjct: 141 GGSLHK-QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSG 195
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,933,575
Number of Sequences: 60738
Number of extensions: 440235
Number of successful extensions: 1066
Number of sequences better than 1.0e-05: 18
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 19
length of query: 205
length of database: 30,389,216
effective HSP length: 101
effective length of query: 104
effective length of database: 24,254,678
effective search space: 2522486512
effective search space used: 2522486512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)