ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5320 good J KOG3283 Translation, ribosomal structure and biogenesis 40S ribosomal protein S8
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5320 1818978 1819580 201
(201 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YER102w [J] KOG3283 40S ribosomal protein S8 276 1e-74
YBL072c [J] KOG3283 40S ribosomal protein S8 276 1e-74
SPAC521.05 [J] KOG3283 40S ribosomal protein S8 242 2e-64
SPAC2C4.16c [J] KOG3283 40S ribosomal protein S8 242 3e-64
7301850 [J] KOG3283 40S ribosomal protein S8 208 3e-54
Hs4506743 [J] KOG3283 40S ribosomal protein S8 197 6e-51
CE04561 [J] KOG3283 40S ribosomal protein S8 192 2e-49
At5g20290 [J] KOG3283 40S ribosomal protein S8 192 2e-49
At5g59240 [J] KOG3283 40S ribosomal protein S8 185 3e-47
Hs20549055 [J] KOG3283 40S ribosomal protein S8 156 2e-38
ECU02g0880 [J] KOG3283 40S ribosomal protein S8 132 4e-31
Hs20558211 [J] KOG3283 40S ribosomal protein S8 115 5e-26
>YER102w [J] KOG3283 40S ribosomal protein S8
Length = 200
Score = 276 bits (706), Expect = 1e-74
Identities = 141/201 (70%), Positives = 152/201 (75%), Gaps = 1/201 (0%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGISRDSRHKR+ATG ELGRQ ANTKIG KRIH VRTRGGN+K+RALRI
Sbjct: 1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRI 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
ETGNFSWASEG+++KTRI GVVYHPSNNELVRTNTLTKAAIVQIDATPFRQW+E+HYGQ+
Sbjct: 61 ETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQT 120
Query: 121 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQSGRC 180
LG IE +V+SQF AGRLYA ISSRPGQSGRC
Sbjct: 121 LG-KKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRC 179
Query: 181 DGYILEGEELAFYLRRLTAKK 201
DGYILEGEELAFYLRRLTAKK
Sbjct: 180 DGYILEGEELAFYLRRLTAKK 200
>YBL072c [J] KOG3283 40S ribosomal protein S8
Length = 200
Score = 276 bits (706), Expect = 1e-74
Identities = 141/201 (70%), Positives = 152/201 (75%), Gaps = 1/201 (0%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGISRDSRHKR+ATG ELGRQ ANTKIG KRIH VRTRGGN+K+RALRI
Sbjct: 1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRI 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
ETGNFSWASEG+++KTRI GVVYHPSNNELVRTNTLTKAAIVQIDATPFRQW+E+HYGQ+
Sbjct: 61 ETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQT 120
Query: 121 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQSGRC 180
LG IE +V+SQF AGRLYA ISSRPGQSGRC
Sbjct: 121 LG-KKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRC 179
Query: 181 DGYILEGEELAFYLRRLTAKK 201
DGYILEGEELAFYLRRLTAKK
Sbjct: 180 DGYILEGEELAFYLRRLTAKK 200
>SPAC521.05 [J] KOG3283 40S ribosomal protein S8
Length = 200
Score = 242 bits (618), Expect = 2e-64
Identities = 121/201 (60%), Positives = 141/201 (69%), Gaps = 1/201 (0%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGI+RDSRHKR+ATG ELGRQ +NT+IG KRIH VR RGGN+KFRALR+
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
++GNFSW SEGV++KTRI V YHPSNNELVRTNTLTK+AIVQIDA PFR WYE+HYG
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120
Query: 121 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQSGRC 180
+G ++ A+++QF AGRLYA +SSRPGQSGRC
Sbjct: 121 MG-SKGKKATATPTPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRC 179
Query: 181 DGYILEGEELAFYLRRLTAKK 201
DGYILEGEEL FYLRR+ KK
Sbjct: 180 DGYILEGEELHFYLRRMAPKK 200
>SPAC2C4.16c [J] KOG3283 40S ribosomal protein S8
Length = 200
Score = 242 bits (617), Expect = 3e-64
Identities = 121/201 (60%), Positives = 141/201 (69%), Gaps = 1/201 (0%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGI+RDSRHKR+ATG ELGRQ +NT+IG KRIH VR RGGN+KFRALR+
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
++GNFSW SEGV++KTRI V YHPSNNELVRTNTLTK+AIVQIDA PFR WYE+HYG
Sbjct: 61 DSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120
Query: 121 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQSGRC 180
+G ++ A+++QF AGRLYA +SSRPGQSGRC
Sbjct: 121 MG-SKGKKATSTPNPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRC 179
Query: 181 DGYILEGEELAFYLRRLTAKK 201
DGYILEGEEL FYLRR+ KK
Sbjct: 180 DGYILEGEELHFYLRRMAPKK 200
>7301850 [J] KOG3283 40S ribosomal protein S8
Length = 219
Score = 208 bits (530), Expect = 3e-54
Identities = 111/205 (54%), Positives = 130/205 (63%), Gaps = 7/205 (3%)
Query: 4 SRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRIETG 63
+RDS HKR ATG ELGR AANTK+G+ R+H VRTRGGN K RALR+ETG
Sbjct: 15 NRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETG 74
Query: 64 NFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQSLG- 122
NF+WASEGVARKTRI VVY+ SNNELVRT TL K +IV IDATPFRQWYE+HY LG
Sbjct: 75 NFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGR 134
Query: 123 ------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQ 176
+E A++ QF +GR+ A ISSRPGQ
Sbjct: 135 KRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQ 194
Query: 177 SGRCDGYILEGEELAFYLRRLTAKK 201
GR DGYILEG+EL FYL+++ +KK
Sbjct: 195 CGRSDGYILEGKELEFYLKKIKSKK 219
>Hs4506743 [J] KOG3283 40S ribosomal protein S8
Length = 208
Score = 197 bits (502), Expect = 6e-51
Identities = 106/206 (51%), Positives = 124/206 (59%), Gaps = 5/206 (2%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGISRD+ HKR TG ELGR AANTKIG +RIH VR RGGN+K+RALR+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
+ GNFSW SE RKTRI VVY+ SNNELVRT TL K IV ID+TP+RQWYESHY
Sbjct: 61 DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
Query: 121 LGXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPG 175
LG I ++ QF G+L A I+SRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
Query: 176 QSGRCDGYILEGEELAFYLRRLTAKK 201
Q GR DGY+LEG+EL FYLR++ A+K
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARK 206
>CE04561 [J] KOG3283 40S ribosomal protein S8
Length = 208
Score = 192 bits (489), Expect = 2e-49
Identities = 102/206 (49%), Positives = 122/206 (58%), Gaps = 5/206 (2%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGISRDS HKR TG ELGR AANTKIG R+ VRTRGGN+K+RALR+
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
++GNFSWASE RKTRI +Y+ +NNELVRT TL K AI+ +DA PFRQWYE+HY
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 121 LGXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPG 175
L ++ + QF GRL A ISS PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180
Query: 176 QSGRCDGYILEGEELAFYLRRLTAKK 201
Q G+ +GYILEG+EL FYLR++ AKK
Sbjct: 181 QVGQANGYILEGKELDFYLRKIRAKK 206
>At5g20290 [J] KOG3283 40S ribosomal protein S8
Length = 222
Score = 192 bits (489), Expect = 2e-49
Identities = 102/217 (47%), Positives = 126/217 (58%), Gaps = 16/217 (7%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGT-KRIHPVRTRGGNQKFRALR 59
MGISRDS HKR ATG E+GRQ ANTK+ + K + +R RGGN K+RALR
Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 60 IETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQ 119
++TGN+SW SE RKTR+ VVY+ SNNELVRT TL K+AIVQ+DA PF+QWY SHYG
Sbjct: 61 LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120
Query: 120 SLGXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXIEHAVDSQFGAG 164
LG ++ ++ QF +G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180
Query: 165 RLYAAISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 201
RL A ISSRPGQ GR DGYILEG+EL FY++++ KK
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKK 217
>At5g59240 [J] KOG3283 40S ribosomal protein S8
Length = 219
Score = 185 bits (470), Expect = 3e-47
Identities = 100/201 (49%), Positives = 122/201 (59%), Gaps = 2/201 (0%)
Query: 3 ISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGT-KRIHPVRTRGGNQKFRALRIE 61
ISRDS HKR ATG ELGRQ ANTK+ + K + +R RGGN K+RALR++
Sbjct: 12 ISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLD 71
Query: 62 TGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQSL 121
TGNFSW SE V RKTRI V Y+ SNNELVRT TL K+AIVQ+DA PF+Q Y HYG +
Sbjct: 72 TGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDI 131
Query: 122 G-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQSGRC 180
G ++ ++ QF +GRL A I+SRPGQ GR
Sbjct: 132 GRKKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRA 191
Query: 181 DGYILEGEELAFYLRRLTAKK 201
DGYILEG+EL FY+++L KK
Sbjct: 192 DGYILEGKELEFYMKKLQKKK 212
>Hs20549055 [J] KOG3283 40S ribosomal protein S8
Length = 208
Score = 156 bits (394), Expect = 2e-38
Identities = 88/206 (42%), Positives = 108/206 (51%), Gaps = 5/206 (2%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGIS+D+ HKR TG ELG AANTKIG IH VR RGGN K+ ALR
Sbjct: 1 MGISQDNWHKRRKTGSKRKPYDKKRKYELGHLAANTKIGPHHIHTVRVRGGNNKYGALRR 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
+ GNFSW SE RKTRIT VVY N++LVRT TL + V D+TP+ QWYESHY
Sbjct: 61 DMGNFSWGSECCTRKTRITDVVYDAPNSKLVRTKTLVENCFVLTDSTPYHQWYESHYALP 120
Query: 121 LGXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPG 175
LG I + QF G+L A ++SR G
Sbjct: 121 LGCKKGAKLTPEEEKTLNKKRSKKIQKKYDEREKNAKISRLLGEQFQQGKLLACVASRLG 180
Query: 176 QSGRCDGYILEGEELAFYLRRLTAKK 201
Q G+ Y+ G+E+ FYLR++ A+K
Sbjct: 181 QCGQAHVYVPGGKEMEFYLRKIKARK 206
>ECU02g0880 [J] KOG3283 40S ribosomal protein S8
Length = 173
Score = 132 bits (331), Expect = 4e-31
Identities = 71/200 (35%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 1 MGISRDSRHKRAATGXXXXXXXXXXXXELGRQAANTKIGTKRIHPVRTRGGNQKFRALRI 60
MGI+ HKR TG G Q ++TKIG +++ PVR RGGN+K++ALR+
Sbjct: 1 MGINHRGDHKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRL 60
Query: 61 ETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWYESHYGQS 120
+ G+F + + G R ++ VVYHPS+NELVRTNTLTK+++V+I A PF+
Sbjct: 61 DMGHFKFITTGKFRMAKLLQVVYHPSSNELVRTNTLTKSSVVKISAEPFKN--------- 111
Query: 121 LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEHAVDSQFGAGRLYAAISSRPGQSGRC 180
++ ++ F G LYA I+SRPGQ G
Sbjct: 112 ------------------------DIKDVARDVDPSLHESFEKGHLYAIITSRPGQVGMA 147
Query: 181 DGYILEGEELAFYLRRLTAK 200
G++L+G+EL FY + K
Sbjct: 148 QGHVLQGDELKFYADKFNKK 167
>Hs20558211 [J] KOG3283 40S ribosomal protein S8
Length = 465
Score = 115 bits (287), Expect = 5e-26
Identities = 64/157 (40%), Positives = 84/157 (52%), Gaps = 5/157 (3%)
Query: 50 GGNQKFRALRIETGNFSWASEGVARKTRITGVVYHPSNNELVRTNTLTKAAIVQIDATPF 109
G N+K+ ALR++ GNFSW SE T I VVY+ NNELVRT TL K I+ I++ P+
Sbjct: 289 GRNEKYCALRLDKGNFSWGSECCTCTTVIIDVVYNAFNNELVRTKTLVKKCIMLINSAPY 348
Query: 110 RQWYESHYGQSLGXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXIEHAVDSQFGAG 164
+QWY+SHY LG I ++ QF G
Sbjct: 349 QQWYQSHYALPLGRKKGTKLTAEEEEILNKKRPKKIHKKYDKRKQNAKISSLLEEQFQQG 408
Query: 165 RLYAAISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 201
RL A I+SR GQ G+ DGY+LEG+E+ F LR++ A K
Sbjct: 409 RLLACITSRVGQCGQADGYVLEGKEMEFCLRKIKAWK 445
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,654,740
Number of Sequences: 60738
Number of extensions: 256731
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 18
length of query: 201
length of database: 30,389,216
effective HSP length: 101
effective length of query: 100
effective length of database: 24,254,678
effective search space: 2425467800
effective search space used: 2425467800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)