ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5325    suspect: LH   A     KOG3937  RNA processing and modification                                mRNA splicing factor

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5325 1820449  1821519 357  
         (357 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBL074c [A] KOG3937 mRNA splicing factor                              188   9e-48

>YBL074c [A] KOG3937 mRNA splicing factor
          Length = 355

 Score =  188 bits (478), Expect = 9e-48
 Identities = 111/304 (36%), Positives = 170/304 (55%), Gaps = 24/304 (7%)

Query: 7   NVPVGTTIGIDLNHFQLPASQPFHGFKHIPKHEGNTVHILHFQR-DESGIRYGYWINSDR 65
           + P+  TIGID   F +  +QPFHG K IP      VH++HFQ  D S +RYGYW +   
Sbjct: 8   SAPIEVTIGIDQYSFNVKENQPFHGIKDIPIGH---VHVIHFQHADNSSMRYGYWFDCRM 64

Query: 66  QKFINFQFDPIREIMVPQLEIDNNSAVNKFDNCQH------LMVEYPSNEYSEEWQELVK 119
             F   Q+DP   +     E D      KF+N  H      +MV YP  +  + W  L +
Sbjct: 65  GNFY-IQYDPKDGLYKMMEERDGA----KFENIVHNFKERQMMVSYPKIDEDDTWYNLTE 119

Query: 120 YIRWKEVRLWCESEFNSESYVYVDSSMTSMEEANMLQKRVGDVRHNMILAPTDEI--TFR 177
           +++  ++R     + N  SYV  DSSMT+++E  +L+  +      M     D+   +  
Sbjct: 120 FVQMDKIRKIVRKDENQFSYV--DSSMTTVQENELLKSSLQKAGSKMEAKNEDDPAHSLN 177

Query: 178 YTPIRFKDPESMRPEFKMQDFLDKSWYLMQVILIKYHYSNLKSLFGELQFSYLNSILFAN 237
           YT I FK  E++RP  +M+DFLDKS+YL   ++++  + N  + FGELQF++LN++ F N
Sbjct: 178 YTVINFKSREAIRPGHEMEDFLDKSYYL-NTVMLQGIFKNSSNYFGELQFAFLNAMFFGN 236

Query: 238 YGSSLQWHNIIELVCFSDCLTEGKYKEIMEQLDSLLCTQMKRIPEEYREFLINIELLQKC 297
           YGSSLQWH +IEL+C S  +     K ++++LD +L  Q+K +PE+Y + L+N  +   C
Sbjct: 237 YGSSLQWHAMIELICSSATVP----KHMLDKLDEILYYQIKTLPEQYSDILLNERVWNIC 292

Query: 298 VRRS 301
           +  S
Sbjct: 293 LYSS 296


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,271,914
Number of Sequences: 60738
Number of extensions: 996571
Number of successful extensions: 2295
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2288
Number of HSP's gapped (non-prelim): 1
length of query: 357
length of database: 30,389,216
effective HSP length: 107
effective length of query: 250
effective length of database: 23,890,250
effective search space: 5972562500
effective search space used: 5972562500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)