ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5331.1    suspect: LH  K     KOG1952   Transcription                                                  Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5331.1 1822579 1822439 -47  
         (47 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CE04007 [K] KOG1952 Transcription factor NF-X1 contains NFX-type...    27   4.1  

>CE04007 [K] KOG1952 Transcription factor NF-X1 contains NFX-type
           Zn2+-binding and R3H domains
          Length = 1119

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 3   LCCITNQSFCIGKGNVRWSCSI 24
           +CCI ++ FC+   N R SC I
Sbjct: 573 VCCIQDEHFCLQMCNKRLSCGI 594


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.329    0.137    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,914,890
Number of Sequences: 60738
Number of extensions: 76827
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 1
length of query: 47
length of database: 30,389,216
effective HSP length: 23
effective length of query: 24
effective length of database: 28,992,242
effective search space: 695813808
effective search space used: 695813808
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)