ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5394    suspect: LH   R     KOG0266  General function prediction only                               WD40 repeat-containing protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5394 1845673 1842956 -906 
         (906 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32551 [R] KOG0266 WD40 repeat-containing protein                   87   9e-17
At2g32700 [R] KOG0266 WD40 repeat-containing protein                   77   2e-13

>At4g32551 [R] KOG0266 WD40 repeat-containing protein
          Length = 930

 Score = 87.4 bits (215), Expect = 9e-17
 Identities = 42/110 (38%), Positives = 66/110 (59%), Gaps = 6/110 (5%)

Query: 117 LDAFIHDFLIKSNLNETAQSFEREAKLLDVEKRLDP-SHDVPEGFLYEWWQIFWDVFNAR 175
           LD +IHD+L+K +L  TAQ+F+ E K+       DP + D P GFL+EWW +FWD+F AR
Sbjct: 19  LDVYIHDYLVKRDLKATAQAFQAEGKVSS-----DPVAIDAPGGFLFEWWSVFWDIFIAR 73

Query: 176 THRGGSDVAKKYFEQQLQRQRQEHTYRGVTMHVARVQQTAEQKGFYQHEM 225
           T+   S+VA  Y E Q+ + R++   +     V++ QQ  +Q+     ++
Sbjct: 74  TNEKHSEVAASYIETQMIKAREQQLQQSQHPQVSQQQQQQQQQQIQMQQL 123


>At2g32700 [R] KOG0266 WD40 repeat-containing protein
          Length = 787

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 6/85 (7%)

Query: 115 KLLDAFIHDFLIKSNLNETAQSFEREAKLLDVEKRLDP-SHDVPEGFLYEWWQIFWDVFN 173
           K+LD +I+D+L+K  L+ TA+SF  E K+       DP + D P GFL+EWW +FWD+F 
Sbjct: 10  KMLDVYIYDYLVKKKLHNTAKSFMTEGKVSP-----DPVAIDAPGGFLFEWWSVFWDIFI 64

Query: 174 ARTHRGGSDVAKKYFEQQLQRQRQE 198
           ART+   S+ A  Y E Q  + +++
Sbjct: 65  ARTNEKHSEAAAAYIEAQQGKAKEQ 89


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.308    0.125    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,501,198
Number of Sequences: 60738
Number of extensions: 1797820
Number of successful extensions: 5120
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5111
Number of HSP's gapped (non-prelim): 6
length of query: 906
length of database: 30,389,216
effective HSP length: 116
effective length of query: 790
effective length of database: 23,343,608
effective search space: 18441450320
effective search space used: 18441450320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)