ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5424    suspect: LH   R     KOG0510  General function prediction only                               Ankyrin repeat protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5424 1855323 1852525 -933 
         (933 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

7298956 [R] KOG0510 Ankyrin repeat protein                             56   3e-07

>7298956 [R] KOG0510 Ankyrin repeat protein
          Length = 914

 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 50/194 (25%), Positives = 88/194 (44%), Gaps = 25/194 (12%)

Query: 448 LPEALYRPPSNLDINFLIDDQGHTSLHWAVAMSNIPLIRVLLVQDADLLRCNDKGFNCLT 507
           L   L  P ++ ++   I ++  T+LH A    N+  + +LL + AD    N +GF  L 
Sbjct: 228 LEALLNAPNADANVRICIREKESTALHLAADEGNVECVDLLLAKGADAKLKNHRGFTPLH 287

Query: 508 KSVFYNNCYKAVSFQQIISML---NPCLVTPDANHRLPLHYLVELTVNRSKEPHVIEYYM 564
            +       +  S   + S+L   N      D +HR PLH      V +S+  + I   M
Sbjct: 288 LAA------RTSSLDCVESLLRNGNADANAEDFDHRTPLH----AAVGKSENAYDI---M 334

Query: 565 DTILDTLAKEDEKLLRMSLNHQDTLGNTPLHLAALNKNVDLCQKLVYFGASPDILNGENQ 624
           +T++   A         ++NH+D  G T LHLAAL+  V   + L++ GA     + +  
Sbjct: 335 ETLIQWGA---------NVNHKDIYGFTALHLAALDGLVQCVEMLIFHGADVTTKSKKGT 385

Query: 625 TVSMILSRFTVPNI 638
           +   +++R T  ++
Sbjct: 386 SALNVITRKTPASV 399


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,336,226
Number of Sequences: 60738
Number of extensions: 2005712
Number of successful extensions: 6327
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6322
Number of HSP's gapped (non-prelim): 2
length of query: 933
length of database: 30,389,216
effective HSP length: 116
effective length of query: 817
effective length of database: 23,343,608
effective search space: 19071727736
effective search space used: 19071727736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)