ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5426    good          A     KOG3293  RNA processing and modification                                Small nuclear ribonucleoprotein (snRNP)

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5426 1856387  1856935 183  
         (183 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YER112w [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)           109   2e-24
Hs6912486 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)          74   1e-13
At5g27720 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)          72   3e-13
SPBC30D10.06 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)       72   6e-13
7297687 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)            69   5e-12
CE01277 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)            64   2e-10

>YER112w [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
          Length = 187

 Score =  109 bits (272), Expect = 2e-24
 Identities = 54/92 (58%), Positives = 68/92 (73%), Gaps = 12/92 (13%)

Query: 1  MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNVT------------HVAS 48
          MLPLYLLTNAKGQ M +ELKNGE ++G L++VDNWMNLTLSNVT            +  S
Sbjct: 1  MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60

Query: 49 GETLKLPSFYLKGSFIKYVNLQDDIIDKVKQQ 80
           + +KL   Y++G+FIK++ LQD+IIDKVKQQ
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQ 92


>Hs6912486 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
          Length = 139

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 39/82 (47%), Positives = 51/82 (61%), Gaps = 2/82 (2%)

Query: 1  MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNV--THVASGETLKLPSFY 58
          MLPL LL  A+   M VELKNGET  G L   DNWMN+ L  V  T     +  ++P  Y
Sbjct: 1  MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 59 LKGSFIKYVNLQDDIIDKVKQQ 80
          ++GS IKY+ + D+IID VK++
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEE 82


>At5g27720 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
          Length = 129

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 1  MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNV--THVASGETLKLPSFY 58
          MLPL LL  A+G  M VELKNGET  G L + D WMN+ L  V  T        ++P  Y
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 59 LKGSFIKYVNLQDDIIDKVKQQ 80
          ++G+ IKY+ + D++IDKV+++
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE 82


>SPBC30D10.06 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
          Length = 121

 Score = 71.6 bits (174), Expect = 6e-13
 Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 1  MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNV--THVASGETLKLPSFY 58
          MLPL LL   +G+ + VELKNGET  G L + DN+MNLTL  V  T     +  +LP  Y
Sbjct: 1  MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 60

Query: 59 LKGSFIKYVNLQDDIIDKVKQQ 80
          ++G+ IKY+ +QD+++ +V +Q
Sbjct: 61 IRGNNIKYLRIQDEVLSQVAKQ 82


>7297687 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
          Length = 153

 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 35/80 (43%), Positives = 49/80 (60%), Gaps = 2/80 (2%)

Query: 2  LPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNV--THVASGETLKLPSFYL 59
          +PL LL  A+   M VELKNGET  G L   D+WMN+ L +V  T        ++P  Y+
Sbjct: 1  MPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYI 60

Query: 60 KGSFIKYVNLQDDIIDKVKQ 79
          +GS IKY+ + D++ID VK+
Sbjct: 61 RGSTIKYLRIPDEVIDMVKE 80


>CE01277 [A] KOG3293 Small nuclear ribonucleoprotein (snRNP)
          Length = 123

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1  MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNV--THVASGETLKLPSFY 58
          +LPL LL  A+   M VELKNGET  G L   D+WMN+ L +V  T     +  K+   Y
Sbjct: 2  VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61

Query: 59 LKGSFIKYVNLQDDIIDKVKQQ 80
          ++GS IKY+ + + ++D VK +
Sbjct: 62 VRGSTIKYLRIPETVVDLVKTE 83


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,666,649
Number of Sequences: 60738
Number of extensions: 239472
Number of successful extensions: 660
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 8
length of query: 183
length of database: 30,389,216
effective HSP length: 100
effective length of query: 83
effective length of database: 24,315,416
effective search space: 2018179528
effective search space used: 2018179528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)