ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5540 good K KOG0261 Transcription RNA polymerase III, large subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5540 1896457 1900827 1457
(1457 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR116c [K] KOG0261 RNA polymerase III large subunit 2420 0.0
SPBC651.08c [K] KOG0261 RNA polymerase III large subunit 1609 0.0
Hs5902062 [K] KOG0261 RNA polymerase III large subunit 1357 0.0
CE04196 [K] KOG0261 RNA polymerase III large subunit 1185 0.0
ECU07g0090 [K] KOG0261 RNA polymerase III large subunit 1108 0.0
At5g60040 [K] KOG0261 RNA polymerase III large subunit 1014 0.0
SPBC28F2.12 [K] KOG0260 RNA polymerase II large subunit 758 0.0
At4g35800 [K] KOG0260 RNA polymerase II large subunit 750 0.0
CE28300 [K] KOG0260 RNA polymerase II large subunit 744 0.0
Hs4505939 [K] KOG0260 RNA polymerase II large subunit 736 0.0
7292659 [K] KOG0260 RNA polymerase II large subunit 723 0.0
ECU03g0290 [K] KOG0260 RNA polymerase II large subunit 641 0.0
YDL140c [K] KOG0260 RNA polymerase II large subunit 566 e-161
7293125 [K] KOG0261 RNA polymerase III large subunit 538 e-152
7303170 [K] KOG0262 RNA polymerase I large subunit 437 e-122
YOR341w [K] KOG0262 RNA polymerase I large subunit 426 e-118
SPBC4C3.05c [K] KOG0262 RNA polymerase I large subunit 423 e-117
CE22157 [K] KOG0262 RNA polymerase I large subunit 393 e-108
ECU04g1400 [K] KOG0262 RNA polymerase I large subunit 381 e-105
At3g57660 [K] KOG0262 RNA polymerase I large subunit 360 7e-99
Hs7661686 [K] KOG0262 RNA polymerase I large subunit 342 3e-93
At1g63020_1 [K] KOG0260 RNA polymerase II large subunit 190 1e-47
At2g40030 [K] KOG0260 RNA polymerase II large subunit 158 7e-38
>YOR116c [K] KOG0261 RNA polymerase III large subunit
Length = 1460
Score = 2420 bits (6272), Expect = 0.0
Identities = 1203/1460 (82%), Positives = 1306/1460 (89%), Gaps = 3/1460 (0%)
Query: 1 MKETVIDIAPKKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGV 60
MKE V+ PK+IKG+ FSALSAADIV+QSEVE+STRDLFDL+ R+ K GALDP+MGV
Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGV 60
Query: 61 SSSQAECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDK 120
SSS EC TCHGNLASCHGHFGH+KLALPVFH+GYFKATIQILQ +CK C A+LLSE DK
Sbjct: 61 SSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDK 120
Query: 121 RKFLTELRRPGMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIH 180
R+FL ELRRPG+DNLRRM ILKKILDQCKKQRRC CG LN LKIIH
Sbjct: 121 RQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIH 180
Query: 181 DTFRWVGKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCE 240
DTFRWVGKKSAPEK+ W+G+WK+VL +NPELERYVKRCMDDLNPLK LNLFKQIK DCE
Sbjct: 181 DTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCE 240
Query: 241 LLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIK 300
LLGID+T SGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIK
Sbjct: 241 LLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIK 300
Query: 301 AGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSS--GTKSKPIRGFCQRLKGK 358
AGL+KGISINNMME WDYLQL VAMYINSDSVNP+MLPGSS G K KPIRGFCQRLKGK
Sbjct: 301 AGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGK 360
Query: 359 QGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLV 418
QGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAK+LTYPEKVTRYN+HKLQ+L+
Sbjct: 361 QGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELI 420
Query: 419 INGPKVHPGANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSL 478
+NGP VHPGANYLLK+NEDARRNLRYGDR+KLAK LQ GDVVERH+EDGDVVLFNRQPSL
Sbjct: 421 VNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSL 480
Query: 479 HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 538
HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN
Sbjct: 481 HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 540
Query: 539 LLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKP 598
LLTPKSGEPIIAATQDFITGSYLISHKDSF+DRA LTQLLSMMSD FDIPPP+IMKP
Sbjct: 541 LLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKP 600
Query: 599 HYLWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNIL 658
+YLWTGKQVFSLLIKP+ SPVVINLDAKNKV++PP K PNEMSQNDGFV+IRGS IL
Sbjct: 601 YYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQIL 660
Query: 659 SGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPG 718
SGVMDKSVLGDGKKHSVFYTILRDYGP EAA AMNRMAKLCAR+LGNRGFSIGINDVTP
Sbjct: 661 SGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPA 720
Query: 719 SDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEV 778
DLKQKKE++VE AY KCDELI LFNKG+LETQPGCNEEQTLEAKIGGLLSKVREEVG+V
Sbjct: 721 DDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDV 780
Query: 779 CIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSK 838
CI ELDN NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSK
Sbjct: 781 CINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSK 840
Query: 839 TPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQY 898
TPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQY
Sbjct: 841 TPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQY 900
Query: 899 DNTVRTSSNGIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQII 958
DNTVRTS+NGIVQFTYGGDGLDPL+MEGNAQPVNFNRSW HA N+T N+ GLLPY I+
Sbjct: 901 DNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIM 960
Query: 959 AETNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKALTLA 1018
N IL PLE +L RYDN G +++ED +K EY+DQ+DAER FY SLRE++ KA LA
Sbjct: 961 ETANEILGPLEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALA 1020
Query: 1019 SLRGERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHR 1078
+LR RG+ L++ PA+EL+ + DE VP ++ +++QL +IS+ V+KFL IA+ KY +
Sbjct: 1021 NLRKSRGMLGLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRK 1080
Query: 1079 ARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI 1138
AR+EPGTA+GAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI
Sbjct: 1081 ARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI 1140
Query: 1139 INAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLEL 1198
INAVLVNDNDERAARVVKGRVEKTLLSDV+FYVQD+Y+DN++F+Q++ID TI+KLQLEL
Sbjct: 1141 INAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLEL 1200
Query: 1199 TLEDIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPNEVFYRM 1258
T+EDI VAI +A KLKI +D++IIGKD+I I V +G KSIST+ KEP N+VFYRM
Sbjct: 1201 TIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSENDVFYRM 1260
Query: 1259 QQLRRALPHIVVKGFSDISRAVINIRDDGKRELLVEGYGLRDVMTTDGVIGSKTKTNHIL 1318
QQLRRALP +VVKG DISRAVINIRDDGKRELLVEGYGLRDVM TDGVIGS+T TNH+L
Sbjct: 1261 QQLRRALPDVVVKGLPDISRAVINIRDDGKRELLVEGYGLRDVMCTDGVIGSRTTTNHVL 1320
Query: 1319 EVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMR 1378
EV+ VLGIEAAR II EI+YTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGL+KMR
Sbjct: 1321 EVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMR 1380
Query: 1379 DSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVKNTVVGEND 1438
DSVLQLASFEKTTDHLFDAAFYMK DAVEGVSECIILGQTMSIGTGSFKVVK T + E D
Sbjct: 1381 DSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKD 1440
Query: 1439 LTPKPTLFETLC-DTVVKAN 1457
L PK LFE+L + +KAN
Sbjct: 1441 LVPKRCLFESLSNEAALKAN 1460
>SPBC651.08c [K] KOG0261 RNA polymerase III large subunit
Length = 1405
Score = 1609 bits (4166), Expect = 0.0
Identities = 828/1451 (57%), Positives = 1060/1451 (72%), Gaps = 59/1451 (4%)
Query: 1 MKETVIDIAPKKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGV 60
MK+ + D PK+IK + F + V VE+S RDL+ + + RS E GALD MG
Sbjct: 1 MKDPIDDQIPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTD-RSPAEHGALDLHMGT 59
Query: 61 SSSQAECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDK 120
S+ Q C TC ++A C GHFG++KLALPVFH+GYFKAT+ ILQ++CK C ++LLS+++K
Sbjct: 60 SNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEK 119
Query: 121 RKFLTELRRPGMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIH 180
R+FL +LRRPG+DNLRR I K+I D CKK RRC +C + LKIIH
Sbjct: 120 RQFLKDLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAGP------LKIIH 173
Query: 181 DTFRWVGKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCE 240
+ FR+V +KS ++E + + + L+ PEL+ ++ + DDLNPLKVLNLFKQI P DCE
Sbjct: 174 ERFRYV-RKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPVDCE 232
Query: 241 LLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIK 300
LLG+D + GRPE +WRY+PAPPVCIRPSV + A+ EDDLTVK+TEI+WTSSLI+
Sbjct: 233 LLGMDP--EHGRPENLLWRYVPAPPVCIRPSVAQEG--ATTEDDLTVKITEIIWTSSLIR 288
Query: 301 AGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQG 360
A L KG I+N+MEQW+++QL++AMYINS+ P + P S SKPIRGFCQRLKGKQG
Sbjct: 289 AALSKGTPISNLMEQWEFMQLSIAMYINSEM--PGLRP--SDMPSKPIRGFCQRLKGKQG 344
Query: 361 RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVIN 420
RFRGNLSGKRVDFSGRTVISPDPNL ID+VAVP R+AKILT+PE+VT NK LQ + N
Sbjct: 345 RFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRN 404
Query: 421 GPKVHPGANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHR 480
GP VHPGANY++ + +R LR+G+R ++A L+ GD+VERH+ D DVVLFNRQPSLH+
Sbjct: 405 GPDVHPGANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHK 464
Query: 481 LSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLL 540
LSI++H K+RPWRT R NECVC PYNADFDGDEMNLHVPQTEEA+ EA+ LMG+KNNL+
Sbjct: 465 LSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLV 524
Query: 541 TPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHY 600
+P++GEPIIAATQDFIT +YL+S KD+F DR ++ + M D++ D+PPP+I+KP
Sbjct: 525 SPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRC 584
Query: 601 LWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSG 660
LWTGKQVF++L+KP+R S V++NLDAK + + K EM DG+++IR S I++G
Sbjct: 585 LWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKT--PEMCPKDGYLMIRNSEIIAG 642
Query: 661 VMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSD 720
V+DKSV+GDGKK S+FY ILRDYG EAA+A+ R++K+CAR+LGNRGFSIGI DV PG
Sbjct: 643 VVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKS 702
Query: 721 LKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCI 780
L +KE +V AYA D+ I + KG LE QPG ++E TLEAKI LSKVR++VGE+C+
Sbjct: 703 LSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICM 762
Query: 781 RELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 840
EL N+PLIMATCGSKGS +NVSQMVA VGQQIISG RVPDGFQDRSLPHF KNSK P
Sbjct: 763 DELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHP 822
Query: 841 QSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDN 900
+KGFV NSF+SGL+P EFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLS YD
Sbjct: 823 LAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDG 882
Query: 901 TVRTSSNGIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAE 960
TVR+S++ +VQF YG DGLDP MEG+ Q V F R+W H+ NL + + +LPY+II
Sbjct: 883 TVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDY 942
Query: 961 TNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEK-ALTLAS 1019
N L D+ + R F +++R F+ E A LAS
Sbjct: 943 VNRAL------------------------DDPKFLTNCNRDFIETIRTFVIENIAKYLAS 978
Query: 1020 LRGERGLKELVDEP-AEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHR 1078
+R R L +++EP ++L + DE P + ++ + ++++ ++ F+ KY R
Sbjct: 979 VRERRDLAPMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSFVDRCWEKYMR 1038
Query: 1079 ARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPI 1138
A+VEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA+ TLGVPRIKEIINA+K ISTPI
Sbjct: 1039 AKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAA-QTTLGVPRIKEIINAAKTISTPI 1097
Query: 1139 INAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLEL 1198
I L+ND DER+ARVVKGR+EKT L DV+ Y++++Y +L I+++ +TI KLQL++
Sbjct: 1098 ITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVTTYLSIQVNFDTISKLQLDI 1157
Query: 1199 TLEDIVVAIAKAPKLKIGTNDISIIGK-DKINIAVSSDGKSMKSISTAMKEPEPNEVFYR 1257
TL DI AI PKLKI + +++ +I++ SSDGKS ++ EV+YR
Sbjct: 1158 TLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSET-----------EVYYR 1206
Query: 1258 MQQLRRALPHIVVKGFSDISRAVINIRDDGKRELLVEGYGLRDVMTTDGVIGSKTKTNHI 1317
+Q +R LP +VV G I+R+VIN ++ GK EL +EG GL+ VM T+G++G+KT TNH+
Sbjct: 1207 LQTYKRVLPDVVVAGIPTINRSVIN-QESGKIELFMEGTGLQAVMNTEGIVGTKTSTNHV 1265
Query: 1318 LEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKM 1377
+E+ DVLGIEAAR II+EI YTM+ HG++VDPRHI LLGDVMT KGEVLGITRFG+AKM
Sbjct: 1266 MEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGVAKM 1325
Query: 1378 RDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVKNTVVGEN 1437
+DSVL LASFEKTTDHLF+AA D++EG+SECI+LG+ IGT F++++ T E
Sbjct: 1326 KDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRT-EEEE 1384
Query: 1438 DLTPKPTLFET 1448
+ PK LF+T
Sbjct: 1385 EQKPKELLFDT 1395
>Hs5902062 [K] KOG0261 RNA polymerase III large subunit
Length = 1391
Score = 1357 bits (3512), Expect = 0.0
Identities = 729/1451 (50%), Positives = 977/1451 (67%), Gaps = 87/1451 (5%)
Query: 7 DIAPKKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAE 66
D+A KK I F S ++ Q+ +++ +++L+ DN + G LD RMG S
Sbjct: 10 DVA-KKTSHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRP 68
Query: 67 CTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTE 126
C TC NLA C GH+G+I L LP FHVGYF+A I ILQ +CK C ++LS+E+K++FL
Sbjct: 69 CETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQFLDY 128
Query: 127 LRRPGMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIHDTFRWV 186
L+RPG+ L++ + KKI D+C+K+ C CG N LKIIH+ ++
Sbjct: 129 LKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGL------LKIIHEKYKTN 182
Query: 187 GKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDS 246
K P ++ ++ +E+N E+E + R ++LNPL VLNLFK+I D LL ++
Sbjct: 183 KKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNP 242
Query: 247 TSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKG 306
++G+P I L PP+C RPSV+ +NEDDLT+KLTEI++ + +IK G
Sbjct: 243 --EAGKPSDLILTRLLVPPLCFRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISG 300
Query: 307 ISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNL 366
+ME WD+LQL A+YINS+ S +P + K K RGF QRLKGKQGRFRGNL
Sbjct: 301 AKTQMIMEDWDFLQLQCALYINSEL---SGIPLNMAPK-KWTRGFVQRLKGKQGRFRGNL 356
Query: 367 SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHP 426
SGKRVDFSGRTVISPDPNL IDEVAVP VAKILT+PEKV + N + L++LV NGP+VHP
Sbjct: 357 SGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHP 416
Query: 427 GANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSH 486
GAN++ +++ +R L+YG+R K+A++L+YGD+VERH+ DGDVVLFNRQPSLH+LSI++H
Sbjct: 417 GANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 487 YAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 546
A+++P RTFR NECVCTPYNADFDGDEMNLH+PQTEEA+AEA+ LMG K NL+TP++GE
Sbjct: 477 LARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 547 PIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMM---SDSNLQFDIPPPSIMKPHYLWT 603
P+IAA QDF+TG+YL++ KD+FFDRA+ Q+++ + D ++ +PPP+I+KP LWT
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWT 596
Query: 604 GKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMD 663
GKQ+FS++++PS +PV NL K K Y + ++ ND +V I+ S ++SG MD
Sbjct: 597 GKQIFSVILRPSDDNPVRANLRTKGKQYCGKGE-----DLCANDSYVTIQNSELMSGSMD 651
Query: 664 KSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQ 723
K LG G K+++FY +LRD+G NEAA AM+R+A+L YL NRGFSIGI DVTPG L +
Sbjct: 652 KGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLK 711
Query: 724 KKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIREL 783
K +++ + Y KCDE I+ N GKL+ QPGC E+TLEA I LS +R+ G C+REL
Sbjct: 712 AKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLREL 771
Query: 784 DNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSK 843
D N+PL MA CGSKGS +N+SQM+A VGQQ ISG+RVPDGF++RSLPHF K+SK P +K
Sbjct: 772 DKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAK 831
Query: 844 GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR 903
GFV NSF+SGL+P EF FH ++GREGLVDTAVKTAETGYM RRL+KSLEDL QYD TVR
Sbjct: 832 GFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVR 891
Query: 904 TSSNGIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAETNV 963
+S+ I+QF YGGDGLDP MEG +P+ F R + + + P L ++I T
Sbjct: 892 SSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTES 951
Query: 964 ILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKALTLASLRGE 1023
I++ K E++ D SF Q +++F+ + + R +
Sbjct: 952 IMK----------------------KSEFLCCQD---SFLQEIKKFIKGVSEKIKKTRDK 986
Query: 1024 RGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHRARVEP 1083
G+ D E R L QL +I+ V+KFL KY RA++EP
Sbjct: 987 YGIN---DNGTTEPR--------------VLYQLDRITPTQVEKFLETCRDKYMRAQMEP 1029
Query: 1084 GTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL 1143
G+AVGA+ AQSIGEPGTQMTLKTFHF GVASMN+TLGVPRIKEIINASK ISTPII A L
Sbjct: 1030 GSAVGALCAQSIGEPGTQMTLKTFHFGGVASMNITLGVPRIKEIINASKAISTPIITAQL 1089
Query: 1144 VNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLELTLEDI 1203
D+D AR+VKGR+EKTLL ++S Y+++++ + F+ +K+ E I L+LE+ E +
Sbjct: 1090 DKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETV 1149
Query: 1204 VVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPNEVFYRMQQLRR 1263
+I + KL++ D+++ G+ + + + KS ++Y +Q L+
Sbjct: 1150 RYSICTS-KLRVKPGDVAVHGEAVVCVTPRENSKS--------------SMYYVLQFLKE 1194
Query: 1264 ALPHIVVKGFSDISRAVINIRDDGKRE---LLVEGYGLRDVMTTDGVIGSKTKTNHILEV 1320
LP +VV+G ++SRAVI+I + +E LLVEG LR VM T GV G++T +N+ EV
Sbjct: 1195 DLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEV 1254
Query: 1321 YDVLGIEAARSCIINEIDYTM-SNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRD 1379
LGIEAAR+ IINEI YTM NHGMS+D RH+ LL D+MTYKGEVLGITRFGLAKM++
Sbjct: 1255 EKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKE 1314
Query: 1380 SVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVKNTVVGENDL 1439
SVL LASFEKT DHLFDAA++ + D+V GVSECII+G M+IGTG FK++ + D
Sbjct: 1315 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHK---ADRDP 1371
Query: 1440 TP--KPTLFET 1448
P +P +F+T
Sbjct: 1372 NPPKRPLIFDT 1382
>CE04196 [K] KOG0261 RNA polymerase III large subunit
Length = 1388
Score = 1185 bits (3066), Expect = 0.0
Identities = 666/1432 (46%), Positives = 894/1432 (61%), Gaps = 92/1432 (6%)
Query: 12 KIKGISFSALSAADIVSQSEVEISTRDLF-DLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
K+ G+ F+ + + V I L+ D++ G LDP+MGVS+ C+TC
Sbjct: 14 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTC 73
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
L C GHFG+ L +PVFH+G+FK TIQ+LQ +CK C ++LL+ E R F ++ P
Sbjct: 74 GLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSRQVMNP 133
Query: 131 GMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIHDTFRWVGKKS 190
+D L R + K+I+ CKK C CG N LKI +
Sbjct: 134 NLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAV----LKIAF---------A 180
Query: 191 APEKEQWIGDWKQVLENNPELERYVKRCMDDL-NPLKVLNLFKQIKPNDCELLGIDSTSK 249
+P +G + + +N E+ +V++ L NPL V LF IK D +L + S +
Sbjct: 181 SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE 240
Query: 250 SGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISI 309
P + +P PPVCIRPSV+ + + EDD+T+KL EI+ T+ ++K G
Sbjct: 241 K-HPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPS 299
Query: 310 NNMMEQWDYLQLAVAMYINSD--SVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLS 367
+ E W++LQ+ A+YINS+ + P M P + +R F QRLKGKQGRFRGNL
Sbjct: 300 KTLFETWEHLQIQCALYINSEMSGLPPDMQP------KRAMRAFTQRLKGKQGRFRGNLC 353
Query: 368 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPG 427
GKRVDFSGRTVISPDPNL ID+V VP VA LT+PE V N K++QLVING VHPG
Sbjct: 354 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 413
Query: 428 ANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 487
ANYL++K ++ L+YG R +LAK L+ GD +ERH++D DVVLFNRQPSLH++SI+SH
Sbjct: 414 ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHR 473
Query: 488 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 547
AK+ P RTFR NEC CTPYNADFDGDEMNLH+PQT EA+AEA LM VKNNL+TP+SGEP
Sbjct: 474 AKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEP 533
Query: 548 IIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQ----FDIPPPSIMKPHYLWT 603
++AA QDFITG YL++HKD+F RA++ + + + D++ + IPPP+I +P LWT
Sbjct: 534 LVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWT 593
Query: 604 GKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMD 663
GKQ+ L+I+P + S V +NL AKNK Y E+ D +V+IR S +L+G +D
Sbjct: 594 GKQLIELIIRPDKGSDVSLNLTAKNKSYTGNL------ELCSKDSYVIIRNSVLLAGCLD 647
Query: 664 KSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQ 723
KS+LG K ++FY ++RDYG + A AM R+A++ +L NRGFSIGI DV P L +
Sbjct: 648 KSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLR 707
Query: 724 KKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIREL 783
+K Q+V++ Y+KC + I +GKL+ QPGC EE+TLE+ I LS +R+ G+VC+R L
Sbjct: 708 EKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNL 767
Query: 784 DNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSK 843
NAPL MA CGSKGS +N+SQM+A VGQQ ISG+R PDGF++RSLPHF + KTP++K
Sbjct: 768 SKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAK 827
Query: 844 GFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR 903
GFV NSF+SGL+P EF FH + GREGLVDTAVKTAETGYM RRL+K LEDL YD TVR
Sbjct: 828 GFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVR 887
Query: 904 TSSNGIVQFTYGGDGLDPLDMEG-NAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAETN 962
+S +++F +G DGLDP ME + V+F HA N+ P +P + E
Sbjct: 888 SSVGDVIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQP--IPVDKLDE-- 943
Query: 963 VILQPLENKLK-RYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKALTLASLR 1021
V+ ++ K K +Y + +L EYI Q + ++S +++ KA
Sbjct: 944 VLKAEIQKKFKGKYVHFADKL-------SEYITQTEIKKS-----KKWQNGKA------- 984
Query: 1022 GERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHRARV 1081
G E D +E + +N+ A T L C ++K + F+ + K RA
Sbjct: 985 -HCGNHETADLKTKESCKI--CKNLEAYKTSLLANSC-LTKTQLCSFIELCYYKVARAIT 1040
Query: 1082 EPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINA 1141
EP GEP TQMTLKTFHFAGVASMN+T GVPRIKEIINA K ISTPII A
Sbjct: 1041 EP------------GEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITA 1088
Query: 1142 VLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLELTLE 1201
L++ DE AR VK R+EKT L ++ Y++++Y + FL +K++S+ I LQLE+ +E
Sbjct: 1089 ALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCME 1148
Query: 1202 DIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPNEVFYRMQQL 1261
I AIA + K+ I+ K +A+ S +S M MQ L
Sbjct: 1149 SISYAIATS-KVCPQMRGCKIVAHGKTMMAIRP--PSTSKLSKTM----------TMQIL 1195
Query: 1262 RRALPHIVVKGFSDISRAVINIRDDGKRE---LLVEGYGLRDVMTTDGVIGSKTKTNHIL 1318
+ +L ++VVKG ++R VI+ D+ K + LLVEG R V+++ GV KT N+ L
Sbjct: 1196 KYSLANVVVKGIPSVNRCVIH-ADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKTNFNNAL 1254
Query: 1319 EVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMR 1378
V DVLGIEAARSCIINEI TM HG+ +D RH+ LL DVMTY+GEVLGITR GL KM+
Sbjct: 1255 VVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMK 1314
Query: 1379 DSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVK 1430
DSVL LASFEKT DHLF+AAF+ + D + GVSECII+G M++GTG+FK+++
Sbjct: 1315 DSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQ 1366
>ECU07g0090 [K] KOG0261 RNA polymerase III large subunit
Length = 1349
Score = 1108 bits (2867), Expect = 0.0
Identities = 652/1437 (45%), Positives = 885/1437 (61%), Gaps = 132/1437 (9%)
Query: 1 MKETVIDIAPKKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGV 60
++E IDI +I+ ISFS LS +I S EIS++DL+D+ R+ G LD R+GV
Sbjct: 38 VEEDEIDI---RIRRISFSLLSPQEISDLSVHEISSKDLYDIST-RAPLPNGPLDLRLGV 93
Query: 61 SSSQAECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDK 120
+ + +C TC LA+C GHFG ++L LPVF+VG K TI L +CK CG++LL+E+ K
Sbjct: 94 GNKKDKCATCGEGLATCIGHFGEVRLVLPVFNVGLIKNTISTLNCLCKSCGSILLNEKKK 153
Query: 121 RKFLTELRRPGMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIH 180
F +LR N ++ IL++I+ +CKK CF C N +I+H
Sbjct: 154 IYFKKKLRESSGGNDTKL-ILRRIVAECKKVNVCFVCSFRNGQIKKTFG------FRIVH 206
Query: 181 DTFRWVGKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCE 240
+ +K + + C +++NPL LN+F +K +D E
Sbjct: 207 EVEDLEKRKKD--------------RGSKGSDGVHSSCCEEINPLVALNVFNMMKEDDYE 252
Query: 241 LLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIK 300
LLG + P I + + PP CIRPSV M D +NEDD+T+K++EIV T+ +++
Sbjct: 253 LLGFLES-----PSRLIIQNVIVPPSCIRPSVSMDDE-GTNEDDITIKISEIVHTNKVLR 306
Query: 301 AGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQG 360
G+EKG +N + E WD+LQL A+ INS+ LP G +P+RG QRLKGK G
Sbjct: 307 EGIEKGNPLNLINEDWDHLQLQCALLINSE------LP-QIGIPGQPVRGIVQRLKGKNG 359
Query: 361 RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVIN 420
RFR NLSGKRVDFSGRTVISPDPNLSI+EV +P+R+AKILT E+VTR N+ KLQ LV+N
Sbjct: 360 RFRCNLSGKRVDFSGRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLN 419
Query: 421 GPKVHPGANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHR 480
GP+ +PGANY++ E +R L YG R +L+YG+VVERH+ DGD+VLFNRQPSLHR
Sbjct: 420 GPENYPGANYVV--GEKFKRFLMYGKR---DIELKYGEVVERHLMDGDMVLFNRQPSLHR 474
Query: 481 LSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLL 540
+SI+SH ++ +T R NECVCTPYNADFDGDEMN+HVPQTE+ARAEA LM V NN++
Sbjct: 475 MSIMSHKVRVHRNKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIV 534
Query: 541 TPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHY 600
TP+ GEPI+AATQDFITG YLI+ KD+FFDR + QL+S S++ + P+I KP
Sbjct: 535 TPRHGEPIVAATQDFITGLYLITGKDTFFDRERFGQLVSYFSEARVGVK---PAIRKPVE 591
Query: 601 LWTGKQVFSLLIKPSRKSPVVINLDAKNK-VYLPPPKKEYPNEMSQNDGFVLIRGSNILS 659
L+TGKQ+ +LIK S + + N N V L + + NDG V I ++
Sbjct: 592 LFTGKQLIEVLIKDSFTASIERNAVTGNMAVSLVGKNRSFKTHDDPNDGSVAILDNSYYF 651
Query: 660 GVMDKSVLG-DGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPG 718
G +DKS++G + K+ S+ Y I++ A +AMN + KLC+RYLG GFSIG++DV PG
Sbjct: 652 GRLDKSIVGGENKRDSLIYAIMK-VSSMAAVRAMNSITKLCSRYLGETGFSIGLDDVQPG 710
Query: 719 SDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEV 778
L+QKKE +V YA+C+ I ++K +P NEE LE +I +L+++REE G +
Sbjct: 711 PILRQKKEMVVRRGYAECESKILEYSK-----KPEANEEM-LEMEISSILNRIREECGSI 764
Query: 779 CIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSK 838
CI+EL N+P IM CGSKGS +NVSQMVA VGQQI+SG R+P+G +R LPHF + S+
Sbjct: 765 CIKELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSR 824
Query: 839 TPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQY 898
TP+SKGFV NSFF GL+ PEF FHA+SGREGLVDTAVKTAETGYM RRLMK+LEDLS QY
Sbjct: 825 TPESKGFVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQY 884
Query: 899 DNTVRTSSNGIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQII 958
D +VR S+ +VQF YG D +DP EG+ + +N + + A + L+ P Y
Sbjct: 885 DGSVRNSNMEVVQFAYGEDQIDPAMSEGD-ESINLEQVFLRAKSSFLHSLGPSPDLYSSW 943
Query: 959 AE---TNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKAL 1015
+ T IL+ L K +++I A R F SL FM K
Sbjct: 944 LDEHGTIDILRRLTPKGYPFEHI-------------------ANRRFVGSLLRFMESKHE 984
Query: 1016 TLASLRGERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISK 1075
G R F +SK ++ F S+ K
Sbjct: 985 DKFCFGGTF------------YRYF-------------------LSKDFIETFFSMVSQK 1013
Query: 1076 YHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIS 1135
VEPGT VGAI QSIGEPGTQMTLKTFHFAGVASMN+TLGVPR+KEIINA IS
Sbjct: 1014 MMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVPRLKEIINAVCNIS 1073
Query: 1136 TPIINAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQ 1195
TPIINA L + +D V+KGR+++ L DV + ++ + FL I++D E++ +L+
Sbjct: 1074 TPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEVISKDEIFLDIRVDLESLSRLK 1133
Query: 1196 LELTLEDIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMKEPEPNEVF 1255
L L + K KL + + ++ ++ + + S+K I+ ++ +
Sbjct: 1134 LNLDIH-------KIEKLLNNHDQVRVVNENTLRV-------SIKKIT--------DQSY 1171
Query: 1256 YRMQQLRRALPHIVVKGFSDISRAVINIRDDGKRELLVEGYGLRDVMTTDGVIGSKTKTN 1315
+ +Q++++ L + + G ++R +IN G L++EG GL +V+ DGV T +N
Sbjct: 1172 FNLQRIKKKLLNTKICGAPQVNRVIIN-SSRGLYSLVIEGRGLLNVINIDGVKAINTTSN 1230
Query: 1316 HILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLA 1375
I EV +VLGIEAAR+ II+EI+YT+SNHG+ +DPRHI LL D MTY+GEV GITRFG++
Sbjct: 1231 SITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFGIS 1290
Query: 1376 KMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVKNT 1432
KM S L LASFE+T+D+LF+AA K+D + GVSE IILG + IGTGS + N+
Sbjct: 1291 KMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDLYWNS 1347
>At5g60040 [K] KOG0261 RNA polymerase III large subunit
Length = 1328
Score = 1014 bits (2623), Expect = 0.0
Identities = 612/1447 (42%), Positives = 845/1447 (58%), Gaps = 161/1447 (11%)
Query: 2 KETVIDIAPKKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVS 61
K + D+ P KIK I+FS LS +++ +EV++ L+D + E G LDPRMG
Sbjct: 12 KPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYD--HSFKPYENGLLDPRMGPP 69
Query: 62 SSQAECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKR 121
+ ++ CTTC GN +C GH+G++KL LPV++VGYF + IL+ +CK C +LL E+
Sbjct: 70 NKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLYE 129
Query: 122 KFLTELRRPGMDNLRRMNILKKILDQCK---KQR--RCFECGELNXXXXXXXXXXXXXXL 176
L ++R P M+ L++ + K ++ +C QR C +CG LN +
Sbjct: 130 DHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFG---I 186
Query: 177 KIIHDTFRWVGKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKP 236
I HD + G + I + K + + + + L+P VL LFK++
Sbjct: 187 GISHDRSKIHGGE--------IDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSD 238
Query: 237 NDCELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTS 296
DCELL I + RPE I + PP+ IRPSVM+ SNE+DLT +L +I+ +
Sbjct: 239 KDCELLYI-----AYRPENLIITCMLVPPLSIRPSVMI-GGIQSNENDLTARLKQIILGN 292
Query: 297 SLIKAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLK 356
+ + L + S M+ WD +Q+ VA YINS+ P + P+ G QRLK
Sbjct: 293 ASLHKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQNQP-----EEHPLSGILQRLK 347
Query: 357 GKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQ 416
GK GRFR NLSGKRV+F+GRTVISPDPNL I EV +P +A+ILT+PE V+R+N KL+Q
Sbjct: 348 GKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQ 407
Query: 417 LVINGPKVHPGANYLLKKNEDARRNLRYGD-RVKLAKQLQYGDVVERHIEDGDVVLFNRQ 475
V NGP +PGA + + D GD R ++A +L G +V+RH+++GDVVLFNRQ
Sbjct: 408 CVRNGPNKYPGARNV--RYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 465
Query: 476 PSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 535
PSLHR+SI+ H A+I PWRT R NE VC PYNADFDGDEMN+HVPQTEEAR EAI LMG
Sbjct: 466 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMG- 524
Query: 536 KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSI 595
D+F+DRA + + S M D D+P P+I
Sbjct: 525 ------------------------------DTFYDRAAFSLICSYMGDGMDSIDLPTPTI 554
Query: 596 MKPHYLWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGS 655
+KP LWTGKQ+FS+L++P+ V + L+ K K + + + M NDG+V R S
Sbjct: 555 LKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNF-KKGEHGFDETMCINDGWVYFRNS 613
Query: 656 NILSGVMDKSV-------LGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGF 708
++SG + K+ LG+G K ++ +LRDY + AA MNR+AKL AR++G GF
Sbjct: 614 ELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGF 673
Query: 709 SIGINDVTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLL 768
SIGI+DV PG +L ++++ ++ Y +C I+ FN+G L+ + G + ++LEA+I G+L
Sbjct: 674 SIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGIL 733
Query: 769 SKVREEVGEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDR 828
+ +RE G+ C+ L N+PLIM+ CGSKGS +N+SQMVA VGQQ ++G+R PDGF DR
Sbjct: 734 NTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDR 793
Query: 829 SLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLM 888
SLPHFP+ SK+P +KGFV NSF+SGL+ EF FH + GREGLVDTAVKTA TGYMSRRLM
Sbjct: 794 SLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLM 853
Query: 889 KSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLDMEG-NAQPVNFNRSWTHANNLTLND 947
K+LEDL YDNTVR +S I+QFTYG DG+DP MEG + P+NFNR + L +
Sbjct: 854 KALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLF-----LKVQA 908
Query: 948 NSPGLLPYQIIAETNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLR 1007
P + ++ + + Q E +L R+D K D +F +SLR
Sbjct: 909 TCPPRSHHTYLS-SEELSQKFEEELVRHD-------KSRVCTD----------AFVKSLR 950
Query: 1008 EFMTEKALTLASLRGERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQK 1067
EF++ + AS P + L K S +
Sbjct: 951 EFVSLLGVKSAS---------------------------PPQV------LYKASGV---- 973
Query: 1068 FLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1127
K A GT +GA QSIGEPGTQMTLKTFHFAGVASMN+T GVPRI EI
Sbjct: 974 -----TDKQLEAGTAIGT-IGA---QSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEI 1024
Query: 1128 INASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKID 1187
INASK ISTP+I+A L N + +AR VKGR+EKT L V+ ++ + A ++I +D
Sbjct: 1025 INASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILD 1084
Query: 1188 SETIEKLQLELTLEDIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSISTAMK 1247
++ IE+ L +T + +I K P++K+ NDI ++ + I+ +
Sbjct: 1085 NKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVL-------------DTGLDITPVVD 1131
Query: 1248 EPEPNEVFYRMQQLRRALPHIVVKGFSDISRAVINIRDDGKR--ELLVEGYGLRDVMTTD 1305
+ + + ++ + + +VV D S+ + DGK +L VEG L VM T
Sbjct: 1132 KSRAHFNLHNLKNGIKTVERVVVAEDMDKSKQI-----DGKTKWKLFVEGTNLLAVMGTP 1186
Query: 1306 GVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGE 1365
G+ G T +N+++EV LGIEAAR+ II+EI M NHGMS+D RH+ LL DVMTY+GE
Sbjct: 1187 GINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGE 1246
Query: 1366 VLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGS 1425
VLGI R G+ KM SVL ASFE+T DHLF AA K D +EGV+EC+I+G M +GTG
Sbjct: 1247 VLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGI 1306
Query: 1426 FKVVKNT 1432
KV++ T
Sbjct: 1307 LKVLQRT 1313
>SPBC28F2.12 [K] KOG0260 RNA polymerase II large subunit
Length = 1752
Score = 758 bits (1957), Expect = 0.0
Identities = 513/1506 (34%), Positives = 788/1506 (52%), Gaps = 158/1506 (10%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
++++ + F LS +I S S +I + D ++G+ + GG LDPR+G Q +C TC
Sbjct: 14 RRVEEVQFGILSPEEIRSMSVAKIEFPETMD-ESGQRPRVGGLLDPRLGTIDRQFKCQTC 72
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
+A C GHFGHI+LA PVFH+G+ +IL+ VC CG L + + + T+ R
Sbjct: 73 GETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFNDTQRYR- 131
Query: 131 GMDNLRRMNILKKILDQCKKQRRC---FECGELNXXXXXXXXXXXXXXLKIIHDTFRWVG 187
D R+N + + CK + C G N T R G
Sbjct: 132 --DPKNRLNAVWNV---CKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDG 186
Query: 188 KKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDST 247
+ W G WK+ + + E+ + L+PL+V +F I D LG++
Sbjct: 187 LRL------W-GSWKRGKDESDLPEKRL------LSPLEVHTIFTHISSEDLAHLGLNE- 232
Query: 248 SKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGI 307
+ RP+ I LP PP +RPS+ + D + EDDLT KL++I+ ++ ++ ++G
Sbjct: 233 -QYARPDWMIITVLPVPPPSVRPSISV-DGTSRGEDDLTHKLSDIIKANANVRRCEQEGA 290
Query: 308 SINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLS 367
+ + E LQ VA Y++++ SG K IR RLKGK+GR RGNL
Sbjct: 291 PAHIVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRA---RLKGKEGRLRGNLM 347
Query: 368 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPG 427
GKRVDFS RTVI+ DPNLS+DE+ VP +AK LTYPE VT YN ++LQ+LV NGP HPG
Sbjct: 348 GKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG 407
Query: 428 ANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 487
A Y+++ + R +LRY R L+YG VERHI DGDVV+FNRQPSLH++S++ H
Sbjct: 408 AKYIIRDTGE-RIDLRYHKRAGDIP-LRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHR 465
Query: 488 AKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEP 547
++ P+ TFRLN V +PYNADFDGDEMN+HVPQ+EE RAE + V +++P+S +P
Sbjct: 466 IRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKP 525
Query: 548 IIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQV 607
++ QD + G S +D+F R + ++ + D + +PPP I+KP LWTGKQ+
Sbjct: 526 VMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWD--GILPPPVILKPKVLWTGKQI 583
Query: 608 FSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVL 667
SL+I K +I D K + P D +LI I+ GV+DK +
Sbjct: 584 LSLIIP---KGINLIRDDDKQSLSNP------------TDSGMLIENGEIIYGVVDKKTV 628
Query: 668 GDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQ 727
G + + +TI ++ GP N + ++ +L + GFSIGI D +D ++ +
Sbjct: 629 G-ASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTR 687
Query: 728 MVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLN 787
V+ A + E I +L+ +PG ++ EAK+ +L++ R+ G L + N
Sbjct: 688 TVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSN 747
Query: 788 APLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVR 847
M GSKGS +N+SQM A VGQQI+ G R+P GF+ R+LPHFPK+ +P+S+GF+
Sbjct: 748 NVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIE 807
Query: 848 NSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSN 907
NS+ GL+P EF FHA++GREGL+DTAVKTAETGY+ RRL+K++ED+ +YD TVR +
Sbjct: 808 NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMG 867
Query: 908 GIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAETNVILQP 967
I+QF YG DGLD +E + ++L L+ + E +
Sbjct: 868 DIIQFAYGEDGLDATLVE-----------YQVFDSLRLSTKQFEKKYRIDLMEDRSLSLY 916
Query: 968 LENKLKRYDNIGQELRKEDEHK----DEYIDQF-------------DAERSFYQSLREFM 1010
+EN ++ D+ Q+L E+ + E + +F + +R +L+ F
Sbjct: 917 MENSIEN-DSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFH 975
Query: 1011 TEKALTLASLRGE--RGLKELVDEPAEELREFNWDENVPASI--------TIALNQLCKI 1060
E L + GL EL+ +L F + + + I L +
Sbjct: 976 LEAKKPTDLLPSDIINGLNELI----AKLTIFRGSDRITRDVQNNATLLFQILLRSKFAV 1031
Query: 1061 SKILVQKFLSIAISKYHRARVE---------PGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1111
+++++ L+ ++ VE PG VG + AQSIGEP TQMTL TFH+AG
Sbjct: 1032 KRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAG 1091
Query: 1112 VASMNVTLGVPRIKEIINASKVISTPIINAVLVN--DNDERAARVVKGRVEKTLLSDV-- 1167
V+S NVTLGVPR+KEI+N +K I TP + L+ + A+ V+ ++E T LS V
Sbjct: 1092 VSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTS 1151
Query: 1168 -----------------------SFYV-------QDIYRDNMAFLQIKIDSETIEKLQLE 1197
+F+ +++Y+ + L++++D + L +
Sbjct: 1152 ATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELD--RAKMLDKK 1209
Query: 1198 LTLEDIVVAIAKAPKLKIGTNDISIIGKDKINI---AVSSDGKSMKSISTAMKEPEPNEV 1254
L++ D+ IA++ + + T S DK+ I + D + + ++E +V
Sbjct: 1210 LSMSDVAGKIAESFERDLFT-IWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEE----DV 1264
Query: 1255 FYRMQQLRRALPHIVVKGFSDISRA------VINIRDDGKRE------LLVEGYGLRDVM 1302
F + + L I ++G +I+R ++ +DG E L +G L + M
Sbjct: 1265 FLKTIE-GHMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAM 1323
Query: 1303 TTDGVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTY 1362
T +GV ++T +N +E+ +LGIEA RS ++ E+ + G V+ RH+ LL DVMT
Sbjct: 1324 TVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTS 1383
Query: 1363 KGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIG 1422
+G ++ ITR G+ + L SFE+T + L DAA + D +G+SE I+LGQ +G
Sbjct: 1384 RGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMG 1443
Query: 1423 TGSFKV 1428
TG+F +
Sbjct: 1444 TGAFDI 1449
>At4g35800 [K] KOG0260 RNA polymerase II large subunit
Length = 1840
Score = 750 bits (1936), Expect = 0.0
Identities = 510/1514 (33%), Positives = 781/1514 (50%), Gaps = 141/1514 (9%)
Query: 12 KIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTCH 71
K++ + F LS +I S + + + + G+ K GG D R+G + +C TC
Sbjct: 14 KVRVVQFGILSPDEIRQMSVIHVEHSET--TEKGKP-KVGGLSDTRLGTIDRKVKCETCM 70
Query: 72 GNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRPG 131
N+A C GHFG+++LA P++HVG+ K + I++ VC C +L E + F R
Sbjct: 71 ANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRSLF-----RQA 125
Query: 132 MDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIHDTFRWVGK--- 188
M N LKKILD CK + +C +++ H T V K
Sbjct: 126 MKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQS--------------HSTDEPVKKSRG 171
Query: 189 -------KSAPEKEQWIGDWKQVLENNPELERYVKRC--MDDLNPLKVLNLFKQIKPNDC 239
K E + I ++K + N E ++ + L +VL++ K+I DC
Sbjct: 172 GCGAQQPKLTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADC 231
Query: 240 ELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLI 299
+LLG + K RP+ I LP PP +RPSVMM D+ + +EDDLT +L I+ + +
Sbjct: 232 QLLGFNP--KFARPDWMILEVLPIPPPPVRPSVMM-DATSRSEDDLTHQLAMIIRHNENL 288
Query: 300 KAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQ 359
K + G + + E LQ +A Y +++ SG +PI+ C RLK K+
Sbjct: 289 KRQEKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSG---RPIKSICSRLKAKE 345
Query: 360 GRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVI 419
GR RGNL GKRVDFS RTVI+PDP ++IDE+ VP +A LTYPE VT YN +L++LV
Sbjct: 346 GRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVD 405
Query: 420 NGPKVHPG---ANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQP 476
GP PG A Y+++ ++ R +LRY + + L+ G VERH++DGD VLFNRQP
Sbjct: 406 YGPHPPPGKTGAKYIIR-DDGQRLDLRYLKKSS-DQHLELGYKVERHLQDGDFVLFNRQP 463
Query: 477 SLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVK 536
SLH++SI+ H +I P+ TFRLN V +PYNADFDGDEMN+HVPQ+ E RAE + LM V
Sbjct: 464 SLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVP 523
Query: 537 NNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFD--IPPPS 594
+++P++ P++ QD + G I+ +D+F ++ L D FD +P P+
Sbjct: 524 KCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWED----FDGKVPAPA 579
Query: 595 IMKPHYLWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRG 654
I+KP LWTGKQVF+L+I P INL + + + + ++ D V I
Sbjct: 580 ILKPRPLWTGKQVFNLII------PKQINL-LRYSAWHADTETGF---ITPGDTQVRIER 629
Query: 655 SNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGIND 714
+L+G + K LG S+ + I + GP+ A + + L +L GF+IGI D
Sbjct: 630 GELLAGTLCKKTLGTSNG-SLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGD 688
Query: 715 VTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREE 774
S +K + + +A +LI F +L+ +PG T E ++ +L+K R++
Sbjct: 689 TIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDD 748
Query: 775 VGEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFP 834
G + L N M T GSKGS +N+SQM A VGQQ + G R+P GF R+LPHF
Sbjct: 749 AGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFT 808
Query: 835 KNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDL 894
K+ P+S+GFV NS+ GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+
Sbjct: 809 KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 868
Query: 895 SCQYDNTVRTSSNGIVQFTYGGDGLDPLDMEG------NAQPVNFNRSWTHA------NN 942
+YD TVR S ++QF YG DG+D + +E + F+R++ + N
Sbjct: 869 MVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNP 928
Query: 943 LTLNDNSPGLLPYQIIAETNVILQPLENKLK--RYDNIGQELRKEDE-------HKDEYI 993
L+D L + I E + +KL+ R+ +G E+ + + +I
Sbjct: 929 TYLSDEH--LEDLKGIRELRDVFDAEYSKLETDRF-QLGTEIATNGDSTWPLPVNIKRHI 985
Query: 994 DQFDAERSFYQSLREFMTEKALTLASLRGERGLKELVDEPAEELREFNWDENVPASITIA 1053
++A+++F LR+ + + ++ + L+ P ++ +N I
Sbjct: 986 --WNAQKTFKIDLRKISDMHPVEIVD-AVDKLQERLLVVPGDDALSVEAQKNATLFFNIL 1042
Query: 1054 LNQLCKISKILVQKFLSIAI---------SKYHRARVEPGTAVGAIGAQSIGEPGTQMTL 1104
L ++L + LS S++ ++ V PG +G + AQSIGEP TQMTL
Sbjct: 1043 LRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1102
Query: 1105 KTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVND--NDERAARVVKGRVEKT 1162
TFH+AGV++ NVTLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T
Sbjct: 1103 NTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYT 1162
Query: 1163 LLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLELTLEDIVVAIAKAPKLKIGTNDISI 1222
L V+ + Y + I+ D E + + E+ ED+ L+I N +
Sbjct: 1163 TLRSVTQATEVWYDPDPMSTIIEEDFEFV-RSYYEMPDEDVSPDKISPWLLRIELNREMM 1221
Query: 1223 IGK--------DKINIAVSSDGKSMKSISTAMK-------------------EPEPNEVF 1255
+ K +KIN+ D + + A K E ++VF
Sbjct: 1222 VDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVF 1281
Query: 1256 YRMQQLRRALPHIVVKGFSDISRAVI------------NIRDDGKRELLVEGYGLRDVMT 1303
+ + L + ++G DI++ I + + L EG L VM
Sbjct: 1282 LKKIE-SNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMC 1340
Query: 1304 TDGVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYK 1363
+ V +T +NH++E+ +VLGIEA R +++E+ +S G V+ RH+ +L D MTY+
Sbjct: 1341 HEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1400
Query: 1364 GEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGT 1423
G ++ ITR G+ + L SFE+T D L DAA Y + D + GV+E I+LGQ IGT
Sbjct: 1401 GHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGT 1460
Query: 1424 GSFKVVKNTVVGEN 1437
G ++ N + +N
Sbjct: 1461 GDCELYLNDEMLKN 1474
>CE28300 [K] KOG0260 RNA polymerase II large subunit
Length = 1852
Score = 744 bits (1920), Expect = 0.0
Identities = 516/1524 (33%), Positives = 780/1524 (50%), Gaps = 183/1524 (12%)
Query: 13 IKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTCHG 72
+ + F L +I S + ++++ NG+ K GG +DPR GV + C TC G
Sbjct: 15 VSRVQFGILGPEEIKRMSVAHVEFPEVYE--NGKP-KLGGLMDPRQGVIDRRGRCMTCAG 71
Query: 73 NLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRPGM 132
NL C GHFGH++LA PVFH+G+ T++IL+ VC CG LL+ + R L L++ G
Sbjct: 72 NLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR-VLEILKKTGT 130
Query: 133 DNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKII------HDTFRWV 186
++ +R+ + I D CK + C E K+ ++R V
Sbjct: 131 NSKKRLTM---IYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRYQPSYRRV 187
Query: 187 GKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDS 246
G E WK+ + + + + + L +VL +F+QI D ++G+D
Sbjct: 188 GIDINAE-------WKKNVNEDTQERKIM------LTAERVLEVFQQITDEDILVIGMDP 234
Query: 247 TSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKG 306
+ RPE I LP PP+ +RP+V+ S A N+DDLT KL++I+ T+ ++ G
Sbjct: 235 --QFARPEWMICTVLPVPPLAVRPAVVTFGS-AKNQDDLTHKLSDIIKTNQQLQRNEANG 291
Query: 307 ISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNL 366
+ + + + LQ VA + D+ P LP ++ +P++ QRLKGK+GR RGNL
Sbjct: 292 AAAHVLTDDVRLLQFHVATLV--DNCIPG-LPTATQKGGRPLKSIKQRLKGKEGRIRGNL 348
Query: 367 SGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHP 426
GKRVDFS RTVI+ DPNL ID V VP +A+ LT+PE VT +N KLQ+LV G +P
Sbjct: 349 MGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYP 408
Query: 427 GANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSH 486
GA K AR +LRY R LQ G VERH++DGD+++FNRQP+LH++S++ H
Sbjct: 409 GA-----KENGARVDLRYHPRAA-DLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGH 462
Query: 487 YAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 546
KI PW TFR+N V +PYNADFDGDEMNLH+PQ+ E RAE + V L+TP++ +
Sbjct: 463 RVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANK 522
Query: 547 PIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQ 606
P++ QD + +++ +D F D + LL + + + +P P+I+KP LWTGKQ
Sbjct: 523 PVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGK--VPQPAILKPKPLWTGKQ 580
Query: 607 VFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNE-MSQNDGFVLIRGSNILSGVMDKS 665
VFSL+I P +N+ + + P + P + +S D V+I +LSG++
Sbjct: 581 VFSLII------PGNVNVLRTHSTH-PDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSK 633
Query: 666 VLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKK 725
+G + + + + + G AA + + + +L G +IGI D
Sbjct: 634 TVGKSAGN-LLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDI 692
Query: 726 EQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDN 785
+ + A ++I+ + LE PG QT E K+ +L+ R+ G + L
Sbjct: 693 QNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSE 752
Query: 786 LNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGF 845
N M GSKGS +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+SKGF
Sbjct: 753 FNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGF 812
Query: 846 VRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS 905
V NS+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVR S
Sbjct: 813 VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS 872
Query: 906 SNGIVQFTYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLLPYQIIAETNVIL 965
+VQ YG DGLD + +E N N P + P + E + +
Sbjct: 873 LAQMVQLRYGEDGLDGMWVE--------------------NQNMPTMKPNNAVFERDFRM 912
Query: 966 QPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTE------------- 1012
+NK R N +++ +E + ++ I ++E S + R + +
Sbjct: 913 DLTDNKFLR-KNYSEDVVREIQESEDGISLVESEWSQLEEDRRLLRKIFPRGDAKIVLPC 971
Query: 1013 ------------------KALTLASLRGERGLKELV--------DEPAEELREFNWD--E 1044
K + L+ L G++EL ++ + ++N
Sbjct: 972 NLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGNDEISKQAQYNATLLM 1031
Query: 1045 NVPASITIALNQLCKISKILVQKF---LSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQ 1101
N+ T+ +C SK+ + F L S++ +A +PG VGA+ AQS+GEP TQ
Sbjct: 1032 NILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMVGALAAQSLGEPATQ 1091
Query: 1102 MTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVN--DNDERAARVVKGRV 1159
MTL TFH+AGV++ NVTLGVPR+KEIIN SK + TP + L D A+ V ++
Sbjct: 1092 MTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKL 1151
Query: 1160 EKTLLSDVS-------------------------FYV---QDIYRDNMAFLQIKIDSETI 1191
E T L V+ FY D+ R + L+I++D + +
Sbjct: 1152 EHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSRTSPWLLRIELDRKRM 1211
Query: 1192 EKLQLELTLEDIVVAIAKAPKLKIG-TNDISIIGKD--------KINIAVSSDGKSMKSI 1242
+ +LT+E I A ++ G ND+ I D ++ IA G++ +
Sbjct: 1212 --VDKKLTMEMI------ADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQ 1263
Query: 1243 STAMKEPEPNEVFYRMQQLRRALPHIVVKGFSDISRAVIN--IRDDGKRELLVEGYGLRD 1300
M++ +VF R + L + ++G IS+ +N DD KR ++ G +
Sbjct: 1264 VDKMED----DVFLRCIE-ANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGFKS 1318
Query: 1301 V----MTTDG-----------VIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHG 1345
V + TDG + +T +N I E+++VLGIEA R I E+D +S G
Sbjct: 1319 VADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDG 1378
Query: 1346 MSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDA 1405
V+ RH+ LL DVMT KG ++ ITR G+ + L SFE+T D L +AA + + D
Sbjct: 1379 SYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDP 1438
Query: 1406 VEGVSECIILGQTMSIGTGSFKVV 1429
V+GVSE I+LGQ GTG F +V
Sbjct: 1439 VKGVSENIMLGQLARCGTGCFDLV 1462
>Hs4505939 [K] KOG0260 RNA polymerase II large subunit
Length = 1970
Score = 736 bits (1900), Expect = 0.0
Identities = 508/1496 (33%), Positives = 775/1496 (50%), Gaps = 114/1496 (7%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
+ IK + F LS ++ S E + + GR K GG +DPR GV C TC
Sbjct: 16 RTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRP-KLGGLMDPRQGVIERTGRCQTC 74
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
GN+ C GHFGHI+LA PVFHVG+ T+++L+ VC C LL+ + + +
Sbjct: 75 AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSK 134
Query: 131 GMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKII-HDTFRWVGKK 189
G R L + D CK + C E++ K H +
Sbjct: 135 GQPKKR----LTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 190 SAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSK 249
+ +WK V E++ E K+ + L+P +V +FK+I +C +LG++ +
Sbjct: 191 IRRSGLELYAEWKHVNEDSQE-----KKIL--LSPERVHEIFKRISDEECFVLGMEP--R 241
Query: 250 SGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISI 309
RPE I LP PP+ +RP+V+MQ S A N+DDLT KL +IV ++ ++ + G +
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGS-ARNQDDLTHKLADIVKINNQLRRNEQNGAAA 300
Query: 310 NNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGK 369
+ + E LQ VA ++++ LP + +P++ QRLKGK+GR RGNL GK
Sbjct: 301 HVIAEDVKLLQFHVATMVDNELPG---LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGK 357
Query: 370 RVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGAN 429
RVDFS RTVI+PDPNLSID+V VP +A +T+ E VT +N +LQ+LV G +PGA
Sbjct: 358 RVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAK 417
Query: 430 YLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAK 489
Y+++ N D R +LR+ + LQ G VERH+ DGD+V+FNRQP+LH++S++ H +
Sbjct: 418 YIIRDNGD-RIDLRFHPKPS-DLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVR 475
Query: 490 IRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPII 549
I PW TFRLN V TPYNADFDGDEMNLH+PQ+ E RAE L V ++TP+S P++
Sbjct: 476 ILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVM 535
Query: 550 AATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQVFS 609
QD +T + +D F +R ++ LL +S + + +P P+I+KP LWTGKQ+FS
Sbjct: 536 GIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGK--VPQPAILKPRPLWTGKQIFS 593
Query: 610 LLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVLGD 669
L+I P IN + + +S D V++ ++ G++ K LG
Sbjct: 594 LII------PGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGT 647
Query: 670 GKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQMV 729
V + L + G + + + + +L G +IGI D S Q + +
Sbjct: 648 SAGSLVHISYL-EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTI 706
Query: 730 ESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNAP 789
+ A E+I+ + +LE PG QT E ++ +L+ R++ G + L N
Sbjct: 707 KKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNF 766
Query: 790 LIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNS 849
M G+KGS +N+SQ++AVVGQQ + G R+P GF+ R+LPHF K+ P+S+GFV NS
Sbjct: 767 KSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENS 826
Query: 850 FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGI 909
+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+KS+E + +YD TVR S N +
Sbjct: 827 YLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQV 886
Query: 910 VQFTYGGDGLDPLDME----GNAQPVN--FNRS--WTHANNLTLNDNSPGLLPYQIIAET 961
VQ YG DGL +E +P N F + + + N L L +++
Sbjct: 887 VQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNA 946
Query: 962 NVILQPLENKLKRYDNIGQELRKEDEHKD-EYIDQFDAERSFYQSLREFMTEKAL--TLA 1018
+ I LE + +R + LR D + + + R + + + F L L
Sbjct: 947 H-IQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLH 1005
Query: 1019 SLRGERGLKELV--------DEPAEELREFNWD--ENVPASITIALNQLCKISKILVQKF 1068
++ G+KEL D+P + N N+ T+ ++ + ++ + F
Sbjct: 1006 PIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAF 1065
Query: 1069 ---LSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1125
L SK+++A PG VGA+ AQS+GEP TQMTL TFH+AGV++ NVTLGVPR+K
Sbjct: 1066 DWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLK 1125
Query: 1126 EIINASKVISTPIINAVLVNDN--DERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQ 1183
E+IN SK TP + L+ + D A+ + R+E T L V+ Y N
Sbjct: 1126 ELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTV 1185
Query: 1184 IKIDSETIE------------------KLQLE--------LTLEDIVVAIAKAPKLKIG- 1216
+ D E + +++L+ LT+E I A K+ G
Sbjct: 1186 VAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQI------AEKINAGF 1239
Query: 1217 TNDISIIGKDKINIAVSSDGKSMKSISTAMKEPE------PNEVFYRMQQLRRALPHIVV 1270
+D++ I D + + M S M+E E ++VF R + L + +
Sbjct: 1240 GDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIE-SNMLTDMTL 1298
Query: 1271 KGFSDISRAVINI-RDDGKRELLV----------------EGYGLRDVMTTDGVIGSKTK 1313
+G IS+ +++ + D K+++++ +G L V++ V +T
Sbjct: 1299 QGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTT 1358
Query: 1314 TNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFG 1373
+N I+E++ VLGIEA R + E+ + +S G V+ RH+ LL D MT +G ++ ITR G
Sbjct: 1359 SNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHG 1418
Query: 1374 LAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVV 1429
+ + L SFE+T D L +AA + ++D ++GVSE I+LGQ GTG F ++
Sbjct: 1419 VNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474
>7292659 [K] KOG0260 RNA polymerase II large subunit
Length = 1887
Score = 723 bits (1866), Expect = 0.0
Identities = 492/1502 (32%), Positives = 766/1502 (50%), Gaps = 130/1502 (8%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
+++K + F LS +I S E + ++ GR K GG +DPR GV + C TC
Sbjct: 12 RQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRP-KLGGLMDPRQGVIDRTSRCQTC 70
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
GN+ C GHFGHI LA PVFH+G+ TI+IL+ VC C +L+S + + ++
Sbjct: 71 AGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSR 130
Query: 131 GMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIHDTFRWVGKKS 190
G R L + D CK + C E GE K H
Sbjct: 131 GQPRKR----LAYVYDLCKGKTIC-EGGE--DMDLTKENQQPDPNKKPGHGGCGHYQPSI 183
Query: 191 APEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSKS 250
+WK E++ E + V + +V + K I +C +LG+D K
Sbjct: 184 RRTGLDLTAEWKHQNEDSQEKKIVV-------SAERVWEILKHITDEECFILGMDP--KY 234
Query: 251 GRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISIN 310
RP+ I LP PP+ +RP+V+M + A N+DDLT KL++I+ ++ ++ G + +
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVVMFGA-AKNQDDLTHKLSDIIKANNELRKNEASGAAAH 293
Query: 311 NMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKR 370
+ E LQ VA +++D P M P + KP++ RLKGK+GR RGNL GKR
Sbjct: 294 VIQENIKMLQFHVATLVDNDM--PGM-PRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 371 VDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANY 430
VDFS RTVI+PDPNL ID+V VP +A+ LT+PE VT +N ++Q+LV G +PGA Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 431 LLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 490
+++ N + R +LR+ + LQ G VERH+ D D+V+FNRQP+LH++S++ H K+
Sbjct: 411 IVRDNGE-RIDLRFHPKSS-DLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKV 468
Query: 491 RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIA 550
PW TFR+N +PYNADFDGDEMNLHVPQ+ E RAE N+ ++TP++ +P++
Sbjct: 469 LPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMG 528
Query: 551 ATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQVFSL 610
QD +T ++ +D F R Q+ LL + + + +P P I+KP LWTGKQ+FSL
Sbjct: 529 IVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAK--MPQPCILKPRPLWTGKQIFSL 586
Query: 611 LIKPSRKSPVVINLDAKNKVYLPPPKKEYPNE-MSQNDGFVLIRGSNILSGVMDKSVLGD 669
+I P +N+ + + P + E P + +S D V++ ++ G++ K LG
Sbjct: 587 II------PGNVNMIRTHSTH-PDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGT 639
Query: 670 GKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQMV 729
S+ + + G + A + + + +L G SIGI D + +Q +
Sbjct: 640 SAG-SLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAI 698
Query: 730 ESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNAP 789
+ A +I + +LE PG QT E K+ +L+ R++ G + L N
Sbjct: 699 KKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNL 758
Query: 790 LIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNS 849
M GSKGS +N+SQ++A VGQQ + G R+P GF+ R+LPHF K+ P+S+GFV NS
Sbjct: 759 KAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENS 818
Query: 850 FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGI 909
+ +GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K++E + YD TVR S +
Sbjct: 819 YLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQL 878
Query: 910 VQFTYGGDGLDPLDMEGNAQPV----------NFNRSWTHANNL--TLNDNSPGLLPYQI 957
+Q YG DGL +E P F W++ + D+ +
Sbjct: 879 IQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDD-----VIKE 933
Query: 958 IAETNVILQPLENKLKRYDNIGQELRK-EDEHKDEYIDQFDAERSFYQSLREFMTEKAL- 1015
+ +++ +Q LE + R + LR+ + + + + +R + + F K L
Sbjct: 934 MTDSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLP 993
Query: 1016 -TLASLRGERGLKELVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAI- 1073
L+ +R +G+K L++ + + T+ C I L K++S
Sbjct: 994 TDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQ--CLIRSTLCTKYVSEEFR 1051
Query: 1074 --------------SKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1119
+++ +A+ PG VGA+ AQS+GEP TQMTL TFHFAGV+S NVTL
Sbjct: 1052 LSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 1111
Query: 1120 GVPRIKEIINASKVISTPIINAVLVND--NDERAARVVKGRVEKTLLSDVS-----FYVQ 1172
GVPR+KEIIN SK P + L D A+ V R+E T L V+ +Y
Sbjct: 1112 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171
Query: 1173 D----IYRDNMAFLQI-----------------KIDSETIEKLQLELTLEDIVVAIAKAP 1211
D + ++ F+ + +I+ + +LT+E I A
Sbjct: 1172 DPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRIELDRKRMTDKKLTMEQI------AE 1225
Query: 1212 KLKIG-TNDISIIGKDK------INIAVSSDGKSMKSISTAMKEPEPNEVFYRMQQLRRA 1264
K+ +G D++ I D + I + ++ ++ + +++F R +
Sbjct: 1226 KINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIE-ANM 1284
Query: 1265 LPHIVVKGFSDISRAVINI-RDDGKRELLV----------------EGYGLRDVMTTDGV 1307
L + ++G I + +++ + D K+ +++ +G + V++ V
Sbjct: 1285 LSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDV 1344
Query: 1308 IGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVL 1367
+T +N I E++ VLGIEA R + E++ + +G+ V+ RH+ LL DVMT KG ++
Sbjct: 1345 DPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLM 1404
Query: 1368 GITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFK 1427
ITR G+ + L SFE+T D L DAA + + D + GVSE II+GQ +GTG F
Sbjct: 1405 AITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFD 1464
Query: 1428 VV 1429
++
Sbjct: 1465 LL 1466
>ECU03g0290 [K] KOG0260 RNA polymerase II large subunit
Length = 1599
Score = 641 bits (1654), Expect = 0.0
Identities = 427/1272 (33%), Positives = 678/1272 (52%), Gaps = 101/1272 (7%)
Query: 222 LNPLKVLNLFKQIKPNDCELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASN 281
LN +V ++FK+I D +G D K RPE I L PP +RPS++M+ S
Sbjct: 173 LNGERVYSIFKKISDEDSVYMGFDL--KYSRPEWMILTVLLVPPPAVRPSIVMEGS-LRG 229
Query: 282 EDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSS 341
EDDLT KL +I+ ++ +K ++G + + + LQ VA +I++D LP +
Sbjct: 230 EDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDNDIGG---LPQAL 286
Query: 342 GTKSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILT 401
+P++ RLKGK+GR RGNL GKRVDFS RTVI+PDPN+S++EV VP +AKI T
Sbjct: 287 QKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHT 346
Query: 402 YPEKVTRYNKHKLQQLVINGPKVHPGANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVE 461
+PEKVT +N +L++LV GP HPGANY+L+ ++ + +L + + +L+ G VVE
Sbjct: 347 FPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR-SDGQKIDLNFN---RSDIRLEEGYVVE 402
Query: 462 RHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQ 521
RH++ GDVVLFNRQPSLH++S+++HYA++ +TFRLN V +PYNADFDGDEMNLH+PQ
Sbjct: 403 RHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMPQ 462
Query: 522 TEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMM 581
+ ++AE L V +++P+S +P++ QD +TG L + +D+F + ++ LL +
Sbjct: 463 SYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAV 522
Query: 582 SDSNLQF-DIP----------------------PPSIMKPHYLWTGKQVFSLLIKPSRKS 618
NL+F DIP P+I KP LWTGKQV S ++
Sbjct: 523 ---NLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLP----- 574
Query: 619 PVVINLDAKNKVYLPPPKKEYPNEMSQN--DGFVLIRGSNILSGVMDKSVLGDGKKHSVF 676
NL N + L E+ ++ +N D V+I+ I SGV+DK G + +
Sbjct: 575 ----NL---NYIGL---SSEHDDDDKENIGDTRVIIQDGYIHSGVIDKKAAG-ATQGGLV 623
Query: 677 YTILRDYGPNEAAQAMNRMAKLCARYL-GNRGFSIGINDVTPGSDLKQKKEQMVESAYAK 735
+ I D+GP AAQ + + ++ ++ G FS+GI D + E + A +
Sbjct: 624 HIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEE 683
Query: 736 CDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNAPLIMATC 795
LI+ + +LE PG +++ E+ + +L++ R+ G R L N M
Sbjct: 684 VSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLA 743
Query: 796 GSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLS 855
GSKGS +N+SQ+ A VGQQ + G R+P GF R+LPHF K+ T +S+GFV NS+ +GL
Sbjct: 744 GSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLD 803
Query: 856 PPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYG 915
P EF FHA+ GREGL+DTA+KTAETGY+ RRL+K+LED + D +VR+ + + Q YG
Sbjct: 804 PEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYG 863
Query: 916 GDGLDPLDMEGNAQPV-NFNRSW----THANNLTLNDNSPGLLPYQIIAETNVILQPLEN 970
DG D +E V NF + + L + Y +++ ++V LQ L +
Sbjct: 864 EDGFDATFLESQKVDVKNFTKRYYIDMFGTEELEIKHGQVSEEVYGMLS-SDVDLQKLLD 922
Query: 971 KLKRYDNIGQELRKEDEHKDEYIDQFDAERSF-----YQSLREFMTEKALTLASLRGERG 1025
+ Y+ + E+ + + + D ER + YQS LA+ +
Sbjct: 923 --QEYEWLVGEIFEGPPILS--VGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTFH 978
Query: 1026 LKE------LVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKF---LSIAISKY 1076
L + E + L N NV +++ ++ ++ + F + + +K
Sbjct: 979 LSTGDVSPYYILEAHKHLTTSNRILNVLIRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKI 1038
Query: 1077 HRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVIST 1136
+A++ P VG + AQS+GEP TQMTL TFH AGVAS VT+GVPR+KEI N +K + T
Sbjct: 1039 LKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS-TVTMGVPRLKEIFNVTKNLKT 1097
Query: 1137 PIINAVLVNDNDE--RAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKL 1194
P + L ++ + AA+ ++ +E + D+ + + Y + +I D + +E
Sbjct: 1098 PSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSEIYYDPEITGTEISDDKDFVE-A 1156
Query: 1195 QLELTLEDIVVAIAKAPKLKIGTNDISIIGKDKINI----------------AVSSDGKS 1238
E ED+ + +++ + ++G+ IN+ + SD +
Sbjct: 1157 YFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRG-INLEYVAMFIRKELGGGAHVICSDENA 1215
Query: 1239 MKSISTAMKEPEPNEVFYRMQQLRRALPHIVVKGFSDISRAVINIRDDGKR-ELLVEGYG 1297
+ + +E +L + + G+ ++ + I+ D K L +G
Sbjct: 1216 VNMVVRVRTTKSEDESLNFYTTALNSLLRLQLGGYKNVKKVYISEDKDRKEWYLQTDGIC 1275
Query: 1298 LRDVMTTDGVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLG 1357
L ++ V T +N ++E+ + LGIEAAR I+ E+ + +G V+ RH+ LL
Sbjct: 1276 LSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILRELTIVIDGNGSYVNYRHMSLLA 1335
Query: 1358 DVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQ 1417
DVMT +G + GITR G+ K+ L+ +SFE+T + L DAA + + G++E I++GQ
Sbjct: 1336 DVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAALVSEKNICRGITENIMMGQ 1395
Query: 1418 TMSIGTGSFKVV 1429
+GTG+ +++
Sbjct: 1396 LAPMGTGNIEIM 1407
Score = 73.2 bits (178), Expect = 3e-12
Identities = 39/117 (33%), Positives = 61/117 (51%), Gaps = 3/117 (2%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
K+IK I F S ++ + S I ++ + G K GG +D RMG + C +C
Sbjct: 8 KQIKSIQFGLFSPDEVRNGSVALIVHPEVME---GGVPKTGGLIDLRMGTTDRMYLCQSC 64
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTEL 127
G+ SC GHFGHI+L P+FHVGY ++L+ VC C + + + + L+ +
Sbjct: 65 GGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKIPRKGIKSTLSNV 121
>YDL140c [K] KOG0260 RNA polymerase II large subunit
Length = 1733
Score = 566 bits (1460), Expect = e-161
Identities = 353/917 (38%), Positives = 492/917 (53%), Gaps = 51/917 (5%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
+ +K + F S ++ + S +I + D R AK GG DPR+G +C TC
Sbjct: 12 RTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTR-AKIGGLNDPRLGSIDRNLKCQTC 70
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
+ C GHFGHI LA PVFHVG+ ++ + VC CG LLL E + EL R
Sbjct: 71 QEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHN------ELMRQ 124
Query: 131 GMDNLRRMNILKKILDQCKKQRRCFEC--GELNXXXXXXXXXXXXXXLKIIHDTFRWVGK 188
+ I CK + C E + I D + VG
Sbjct: 125 ALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGS 184
Query: 189 KSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTS 248
+K++ GD + PEL L+ ++LN+FK I D LG +
Sbjct: 185 W---KKDRATGD-----ADEPELRV--------LSTEEILNIFKHISVKDFTSLGFNEVF 228
Query: 249 KSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGIS 308
RPE I LP PP +RPS+ +S EDDLT KL +I+ + ++ G
Sbjct: 229 S--RPEWMILTCLPVPPPPVRPSISFNESQRG-EDDLTFKLADILKANISLETLEHNGAP 285
Query: 309 INNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSG 368
+ + E LQ VA Y+++D SG +P++ RLKGK+GR RGNL G
Sbjct: 286 HHAIEEAESLLQFHVATYMDNDIAGQPQALQKSG---RPVKSIRARLKGKEGRIRGNLMG 342
Query: 369 KRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGA 428
KRVDFS RTVIS DPNL +D+V VP +AK LTYPE VT YN +L QLV NGP HPGA
Sbjct: 343 KRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA 402
Query: 429 NYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYA 488
Y+++ + D R +LRY R QLQYG VERHI D D VLFNRQPSLH++S+++H
Sbjct: 403 KYVIRDSGD-RIDLRYSKRAGDI-QLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRV 460
Query: 489 KIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 548
K+ P+ TFRLN V +PYNADFDGDEMNLHVPQ+EE RAE L V +++P+S +P
Sbjct: 461 KVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPC 520
Query: 549 IAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQVF 608
+ QD + G ++ +D+F + Q+ +L + D + IP P+I+KP LW+GKQ+
Sbjct: 521 MGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGV--IPTPAIIKPKPLWSGKQIL 578
Query: 609 SLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVLG 668
S+ I P I+L + E +S D +LI I+ GV++K +G
Sbjct: 579 SVAI------PNGIHLQRFD---------EGTTLLSPKDNGMLIIDGQIIFGVVEKKTVG 623
Query: 669 DGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQM 728
+ + + R+ GP A+ + K+ +L + GFS GI D ++ +
Sbjct: 624 SSNG-GLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITET 682
Query: 729 VESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNA 788
+ A K ++ L + G ++ E + L++ R++ G + L +LN
Sbjct: 683 IAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNN 742
Query: 789 PLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRN 848
M GSKGS +N++QM A VGQQ + G R+ GF DR+LPHF K+ +P+SKGFV N
Sbjct: 743 VKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVEN 802
Query: 849 SFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNG 908
S+ GL+P EF FHA+ GREGL+DTAVKTAETGY+ RRL+K+LED+ YDNT R S
Sbjct: 803 SYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGN 862
Query: 909 IVQFTYGGDGLDPLDME 925
++QF YG DG+D +E
Sbjct: 863 VIQFIYGEDGMDAAHIE 879
Score = 176 bits (446), Expect = 2e-43
Identities = 130/410 (31%), Positives = 207/410 (49%), Gaps = 40/410 (9%)
Query: 1059 KISKILVQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1118
+++K LS +++ R+ V PG VG + AQSIGEP TQMTL TFHFAGVAS VT
Sbjct: 1036 RLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVT 1095
Query: 1119 LGVPRIKEIINASKVISTPIINAVLVNDN--DERAARVVKGRVEKTLLSDVSFYVQDIYR 1176
GVPR+KEI+N +K + TP + L + D+ A++++ +E T L V+ +IY
Sbjct: 1096 SGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTI-ASEIYY 1154
Query: 1177 DNMAFLQIKIDSETIEKLQLELTLEDIVVAI-AKAPKL------KIGTNDISI----IG- 1224
D + + E I +L L E+ + ++P L + ND + +G
Sbjct: 1155 DPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGE 1214
Query: 1225 ------KDKINIAVSSDGKSMKSISTAMKEPEP------NEVFYRMQQLRRA-LPHIVVK 1271
K+ + + S D I + P+ E + ++++ L +I ++
Sbjct: 1215 RIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLR 1274
Query: 1272 GFSDISRAVINIRD------------DGKRELLVEGYGLRDVMTTDGVIGSKTKTNHILE 1319
G +I R V+ D + + L +G L +VMT G+ ++ TN ++
Sbjct: 1275 GVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFID 1334
Query: 1320 VYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRD 1379
+ +VLGIEA R+ + E+ +++ G V+ RH+ LL DVMT +G + +TR G +
Sbjct: 1335 IMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNT 1394
Query: 1380 SVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVV 1429
L SFE+T + LF+A + D GVSE +ILGQ IGTG+F V+
Sbjct: 1395 GALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM 1444
>7293125 [K] KOG0261 RNA polymerase III large subunit
Length = 1259
Score = 538 bits (1387), Expect = e-152
Identities = 289/619 (46%), Positives = 400/619 (63%), Gaps = 20/619 (3%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
KKI + F A +I ++ V I +++L+ R G LD RMG+S+ A C TC
Sbjct: 13 KKISHVQFGISGADEIQQEALVRIISKNLYQAQ--RQPVPYGVLDRRMGISTKDAMCETC 70
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
L C GHFG++ LALPVFH+G+F++TI ILQ +CK C ++L ED++ + +L P
Sbjct: 71 GQGLNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEKKLHNP 130
Query: 131 GMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXXXXLKIIHDTFRWVGKKS 190
L + + ++L + KK +C CG N LKI+HD ++ G+K
Sbjct: 131 NFSYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGL-----LKILHDPYK--GRKM 183
Query: 191 APEKEQWIGDWKQVLENNPELERYVKR--CMDDLNPLKVLNLFKQIKPNDCELLGIDSTS 248
+ + + + N +L + ++L PL VL+LF+QI D LLG+ S
Sbjct: 184 DSLFTSNMNEMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGM--CS 241
Query: 249 KSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGIS 308
P+ I + PP CIRPSV+ + + EDDLT+K +EI+ + +I+ + G
Sbjct: 242 HDAHPKHLIVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGK 301
Query: 309 INNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSG 368
I + E WD+LQL VA+Y +S+ S +P + K K RG QRLKGKQGRFR NLSG
Sbjct: 302 IELIHEDWDFLQLHVALYFHSEI---SGIPINMAPK-KTTRGIVQRLKGKQGRFRCNLSG 357
Query: 369 KRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGA 428
KRVDFSGRTVISPDPNL I++V VP RVAKILTYPE+V N +++LV NGP +HPGA
Sbjct: 358 KRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGA 417
Query: 429 NYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYA 488
NY+ ++ ++ L YG+R K+A++L+ GDVVERH+ DGD+VLFNRQPSLH++SI+ H A
Sbjct: 418 NYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRA 477
Query: 489 KIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPI 548
K++P RTFR NEC CTPYNADFDGDEMNLH+PQTEEARAEA+ LMG ++NL+TPK+GE +
Sbjct: 478 KVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEIL 537
Query: 549 IAATQDFITGSYLISHKDSFFDRAQLTQLLSMM---SDSNLQFDIPPPSIMKPHYLWTGK 605
IAATQDFITG YL++ K+ F + + QL + DS + +PPP+++KP LWTGK
Sbjct: 538 IAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPALLKPRRLWTGK 597
Query: 606 QVFSLLIKPSRKSPVVINL 624
Q+FSLL++P+ S V +N+
Sbjct: 598 QMFSLLMRPNDDSQVRLNM 616
Score = 495 bits (1274), Expect = e-139
Identities = 300/701 (42%), Positives = 420/701 (59%), Gaps = 72/701 (10%)
Query: 757 EQTLEAKIGGLLSKVREEVGEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQII 816
++TLE+ + LS +RE+ + C EL N+ LIMA GSKGS +N+SQM+A VGQQ I
Sbjct: 619 KETLESVMLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAI 678
Query: 817 SGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVK 876
SG RVP+GF++R+LPHF ++S P ++GFV+NSF+SGL+P EF FH ++GREGLVDTAVK
Sbjct: 679 SGKRVPNGFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVK 738
Query: 877 TAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLDMEGNAQPVNFNRS 936
TAETGY+ RRL+K LEDL YD TVR + N +V YGG D LD PV+
Sbjct: 739 TAETGYLQRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGG---DGLD------PVSMETR 789
Query: 937 WTHANNLTLNDNSPGLLPYQIIAETNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQF 996
N P L +Q + L+ G++ E E ++
Sbjct: 790 -----------NKPVDLVHQY------------DNLRAQHPQGKDRPLNAEEMSEALETL 826
Query: 997 DAERSFYQSLREFMTEKALTLASLRGERGLKELVDEPAEELREFNWDENVPASITIALNQ 1056
F ++ +F + ++ ++ ++ + + + I +
Sbjct: 827 LRTPEFAEARDDFKLD-------------VRNHINTVSKRIGQLQ--KRYEKCIDLCHQI 871
Query: 1057 LCKISKILVQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1116
C ++ L+Q F+ +Y+RA EPGTAVGAI AQSIGEPGTQMTLKTFHFAGVASMN
Sbjct: 872 ECLTTEQLLQ-FVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMN 930
Query: 1117 VTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYR 1176
+T GVPRI EIINA+K ISTPII A L N + AR VK R+EKT L+++S YV+ +
Sbjct: 931 ITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVCG 990
Query: 1177 DNMAFLQIKIDSETIEKLQLELTLEDIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDG 1236
+L I +D I+ L L + L+ IV +I K+ ++++ + ++
Sbjct: 991 PYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVVA------------ 1037
Query: 1237 KSMKSISTAMKEPEPNEVFYRMQQLRRALPHIVVKGFSDISRAVINIRDDGKR----ELL 1292
S I ++ + + + +L +L ++VV G +I+RAVI + DD ++ +L
Sbjct: 1038 -SQSRIVVRVEATRTSTINAELARLALSLQNVVVAGLPNINRAVIAV-DDARQPPTYKLC 1095
Query: 1293 VEGYGLRDVMTTDGVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRH 1352
+EGYGLRDV+ T GV+G +T++N+I E+Y LGIEAAR+ I++EI M HGMSVD RH
Sbjct: 1096 IEGYGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRH 1155
Query: 1353 IQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSEC 1412
I LL MT +GEVLGITR GLAKMR+SV LASFEKT DHLFDAA+Y + DA+ GVSE
Sbjct: 1156 IMLLASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSER 1215
Query: 1413 IILGQTMSIGTGSFKVVKNTVVGENDLTPKPTLFETLCDTV 1453
IILG IGTG FK+++ +++ P + T+C ++
Sbjct: 1216 IILGMPACIGTGIFKLLQ-----QHEDKQVPPIEPTICSSL 1251
>7303170 [K] KOG0262 RNA polymerase I large subunit
Length = 1642
Score = 437 bits (1123), Expect = e-122
Identities = 381/1274 (29%), Positives = 572/1274 (43%), Gaps = 145/1274 (11%)
Query: 16 ISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMG-VSSSQAECTTCHGNL 74
+ F+ + +I S V++ T FD A GG D RMG C TC L
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALG--HAIPGGLYDIRMGSYGRCMDPCGTCL-KL 72
Query: 75 ASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGAL--------------------- 113
C GH GHI+L PV++ + K ++L C C L
Sbjct: 73 QDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGY 132
Query: 114 LLSEEDKRKFLTELRRPGMDNLRRMNILKKILDQCKKQRRCFECGELNXXXXXXXXXXXX 173
++ ++ F +E+ +NL + + + E E N
Sbjct: 133 IIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCSLR 192
Query: 174 XXLKIIHDTFRWVGKKSAPEKEQW---------------IGDWKQVLENNPELERYVKRC 218
I H + +GKK + + D K+ + E K
Sbjct: 193 TA--ITHSALQRLGKKCRHCNKSMRFVRYMHRRLVFYVTLADIKERVGTGAETGGQNKVI 250
Query: 219 MDDLNPLKVLNLFKQIKPNDCELLGI----------DSTSKSGRP-ETYIWRYLPAPPVC 267
D + +QI N ELL + D T P + + LP P
Sbjct: 251 FAD----ECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPR 306
Query: 268 IRPSVMMQDSPASN-EDDLTVKLTEIVWTSSLI----KAGLEK-----GISINNMMEQWD 317
RP M+ D N + D+ + + E +++ K G EK + + +
Sbjct: 307 ARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETA 366
Query: 318 YLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 377
+ +L A SV+ +L + + K G Q ++ K G R ++ GKRV+++ RT
Sbjct: 367 HEKLYTAWLALQMSVDV-LLDVNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAART 425
Query: 378 VISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLLKKN-- 435
VI+PDPN+++DE+ +PD AK L+YP VT +N +L+++V+NGP VHPGANY+ KN
Sbjct: 426 VITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGF 485
Query: 436 ------EDARRNLRYGDRVKLAKQLQYGD-----VVERHIEDGDVVLFNRQPSLHRLSIL 484
++A + R LAK L +V RH+ +GDV+L NRQPSLH+ SI+
Sbjct: 486 TTYIPADNASK------RESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIM 539
Query: 485 SHYAKI-RPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 543
H A+I +TFRL+ C YNADFDGDEMN H PQ+E ARAEA NL+ V +N L PK
Sbjct: 540 GHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPK 599
Query: 544 SGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSM-MSDSNLQFDIPPPSIMKPHYLW 602
G P+ QD + +S + FF+R QL+ +S + PP+I+KP LW
Sbjct: 600 DGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLPPTILKPAVLW 659
Query: 603 TGKQVFS-LLIKPSRKSPVVINLDAKNKVY---------LPPPKKEYPNEMSQNDGFVLI 652
+GKQ+ S ++I + INLD+ K+ PP P ++ V I
Sbjct: 660 SGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSESQVQI 719
Query: 653 RGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGI 712
R +L GV+DK G + + + + YG + + + K+ +L GF++G+
Sbjct: 720 RNGELLVGVLDKQQYG-ATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGV 778
Query: 713 ND--VTPGSDLKQKK-----EQMVESAYAKCDELID------LFNKGKLETQPGCNEEQT 759
D VT +D K++K + SA A EL D L K +
Sbjct: 779 KDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVL 838
Query: 760 LEAKIGGLLSKVREEVGEVC-----IRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQ 814
L+ K LL ++ C I + + N L M G+KGS +N Q+ ++GQ
Sbjct: 839 LDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQL-MVLSGAKGSMVNTMQISCLLGQI 897
Query: 815 IISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTA 874
+ G R P +SLP F +P+S GF+ F +G+ P +F FH ++GREGL+DTA
Sbjct: 898 ELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTA 957
Query: 875 VKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLDMEGNAQPVNFN 934
VKT+ +GY+ R L+K LE LS YD TVR S N +VQF YG DGLD L + FN
Sbjct: 958 VKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSK------FFN 1011
Query: 935 RSWTHANNLTLNDNS---PGLLPYQIIAETNVILQPLENKLKRYD------------NIG 979
+ A+ LT N + P L E +Q E ++ ++ +
Sbjct: 1012 DKFC-ADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLRAAFTHFS 1070
Query: 980 QELRKEDEHK-DEYIDQFDAERSFYQSLREFMTEKALTLASLRGERGLKELVDEPAEELR 1038
+ELR+E E K I+ R F + L + + +KA + D +
Sbjct: 1071 EELREEVEVKRPNEINSKTGRRRFDEGLLK-LWKKADAEDKALYRKKYARCPDPTVAVYK 1129
Query: 1039 EFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEP 1098
+ + +V + K L + I K ++ PG VG I AQSIGEP
Sbjct: 1130 QDLYYGSVSERTRKLITDYAKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEP 1189
Query: 1099 GTQMTLKTFHFAGVASMNVTLGVPRIKEIIN-ASKVISTPIINAVLVNDNDERAARVVKG 1157
TQMTL TFHFAG MNVTLG+PR++EI+ AS I TP ++ + + + A ++
Sbjct: 1190 STQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSMD-IPIKPGQQHQAEKLRI 1248
Query: 1158 RVEKTLLSDVSFYV 1171
+ L+++ YV
Sbjct: 1249 NLNSVTLANLLEYV 1262
Score = 70.5 bits (171), Expect = 2e-11
Identities = 46/162 (28%), Positives = 83/162 (50%), Gaps = 2/162 (1%)
Query: 1269 VVKGFSDISRAVINIRDDGKRELLVEGYGLRDVMTTDGVIG-SKTKTNHILEVYDVLGIE 1327
VV I RA+I D + L +G + ++ + ++ ++ +N I + GIE
Sbjct: 1478 VVHQVQHIKRAIIYKGTDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHAIARTYGIE 1537
Query: 1328 AARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASF 1387
AA I+ E+ +G++VD RH+ L+ D MT+ G ++R G+ + S LQ SF
Sbjct: 1538 AASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGM-EHSSSPLQQMSF 1596
Query: 1388 EKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVV 1429
E + L AA + + D + S +++G + GTG+F+++
Sbjct: 1597 ESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELL 1638
>YOR341w [K] KOG0262 RNA polymerase I large subunit
Length = 1664
Score = 426 bits (1096), Expect = e-118
Identities = 319/980 (32%), Positives = 485/980 (48%), Gaps = 128/980 (13%)
Query: 252 RPETYIWRYLPAPPVCIR-PSVMMQDSPASNEDDLTVKLTEIVWTSSLI----------- 299
+ +++ L PP R PS + ++ ++++ L L++++ TS LI
Sbjct: 351 KADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQL---LSKVLTTSLLIRDLNDDLSKLQ 407
Query: 300 --KAGLE-KGISINNMMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLK 356
K LE + + + +M + +Q V +I+S G + K PI G Q L+
Sbjct: 408 KDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQ-----GRTSGKV-PIPGVKQALE 461
Query: 357 GKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQ 416
K+G FR ++ GKRV+++ R+VISPDPN+ +E+ VP A LTYPE VT YN +L+Q
Sbjct: 462 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQ 521
Query: 417 LVINGPKVHPGANYLLKKNEDARRNLRYG----DRVKLAKQL----------QYGDVVER 462
VINGP PGA + +NED G R LA QL V R
Sbjct: 522 AVINGPDKWPGATQI--QNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYR 579
Query: 463 HIEDGDVVLFNRQPSLHRLSILSHYAKIRP-WRTFRLNECVCTPYNADFDGDEMNLHVPQ 521
HI++ DVVL NRQP+LH+ S++ H ++ P +T RL+ YNADFDGDEMN+H PQ
Sbjct: 580 HIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQ 639
Query: 522 TEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMM 581
E ARAEA+NL + LTP SG P+ QD I+ ++ KDSFF R Q Q +
Sbjct: 640 NENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGC 699
Query: 582 ------SDSNLQFDIPPPSIMKPHYLWTGKQVFS-LLIKPSRKSPVVINLDAKNKVYLPP 634
+ + PP+I KP+ LWTGKQ+ + +L+ + INL +KNK+
Sbjct: 700 IRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKI---- 755
Query: 635 PKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNR 694
K EY + S + VL + +L G++DKS G K+ + +++ YGP AA+ ++
Sbjct: 756 -KNEYWGKGSLENE-VLFKDGALLCGILDKSQYG-ASKYGIVHSLHEVYGPEVAAKVLSV 812
Query: 695 MAKLCARYLGNRGFSIGIND------------------VTPGSDLKQKKEQMVESAYAKC 736
+ +L Y+ F+ G++D V G + + + + A
Sbjct: 813 LGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADD 872
Query: 737 DELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNAPL----IM 792
EL+ K E N+ L+A ++ + +V C+ + P M
Sbjct: 873 PELL----KRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAM 928
Query: 793 ATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFS 852
A G+KGS +NVSQ++ ++GQQ + G RVP ++LP F + G+V+ F+S
Sbjct: 929 ALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYS 988
Query: 853 GLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQF 912
G+ P E+ FH ++GREGL+DTAVKT+ +GY+ R L K LE + YDN++R + +VQF
Sbjct: 989 GIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQF 1048
Query: 913 TYGGDGLDPLDMEGNAQPVNFNRSWTHANNLTLNDNSPGLL----PYQIIAETNVILQPL 968
YGGD +D + E + F DN LL P +I +V
Sbjct: 1049 MYGGDAID-ITKESHMTQFEF-----------CLDNYYALLKKYNPSALIEHLDV----- 1091
Query: 969 ENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKALTLASLRGERGLKE 1028
E+ LK Y + RK+ + Y + L ++ K L S + L+
Sbjct: 1092 ESALK-YSKKTLKYRKKHSKEPHYKQSV----KYDPVLAKYNPAKYLGSVSENFQDKLES 1146
Query: 1029 LVDEPAEELREFNWDENVPASITIALNQLCKISKILVQKFLSIAISKYHRARVEPGTAVG 1088
+D+ ++ + + +N+ +KF ++ KY R+ + PG AVG
Sbjct: 1147 FLDKNSKLFKSSD-----------GVNE---------KKFRALMQLKYMRSLINPGEAVG 1186
Query: 1089 AIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NASKVISTPIINAVLVNDN 1147
I +QS+GEP TQMTL TFHFAG + NVTLG+PR++EI+ AS I TP + + ND
Sbjct: 1187 IIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDV 1246
Query: 1148 DERAARVVKGRVEKTLLSDV 1167
+ A + K LLS+V
Sbjct: 1247 SDEQADTFCKSISKVLLSEV 1266
Score = 82.4 bits (202), Expect = 5e-15
Identities = 50/162 (30%), Positives = 85/162 (51%), Gaps = 2/162 (1%)
Query: 1269 VVKGFSDISRAVINIRDDGKRELLVEGYGLRDVMTTDGVIGSKTKT-NHILEVYDVLGIE 1327
+++ I R V ++GKR L+ EG + + + I T N + V G+E
Sbjct: 1497 IIRQIPHIDRCVHPEPENGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVE 1556
Query: 1328 AARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASF 1387
AAR+ I+NEI+ S + +SV RH+ L+ D+MT +G L R G+ S +++ S+
Sbjct: 1557 AARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKM-SY 1615
Query: 1388 EKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVV 1429
E T L A + + ++ S I++G+ ++GTGSF V+
Sbjct: 1616 ETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657
>SPBC4C3.05c [K] KOG0262 RNA polymerase I large subunit
Length = 1689
Score = 423 bits (1087), Expect = e-117
Identities = 355/1158 (30%), Positives = 562/1158 (47%), Gaps = 178/1158 (15%)
Query: 177 KIIHDTFRWVGKKSAPEKEQWIGDWKQVLENNPELERYVKRCMDDLNPLK---------- 226
KI D R KK E E + GD N E+E + +D NPLK
Sbjct: 264 KIRSDVLRDTSKKHH-EDEGYDGDSDS--SNESEVEG-IDLFEEDPNPLKNKSKSPIAHG 319
Query: 227 --------VLNLFKQIKPNDCELLGIDSTSKSGRP---ETYIWRYLPAPPVCIRPSVMMQ 275
V N +++ + +L K G+P + + + + PP RP+ M
Sbjct: 320 AKYMTSTEVRNHLRRLFVKENVVLSRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKMG 379
Query: 276 DSPASN-EDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQL---AVAMYINS-- 329
D N +++L ++ + SS+ A L K ++ ++ + L+ A + IN+
Sbjct: 380 DEVHENIQNELLTRILQ----SSIQIASLSKDSTVEVNPDEKEGLERRSRAFELLINAFV 435
Query: 330 ------DSVNPSMLPGSSGTKSKPIR-GFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPD 382
+S+ S SSG +S+ + G Q L+ K+G FR ++ GKRV+++ R+VISPD
Sbjct: 436 QLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPD 495
Query: 383 PNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLLKKNEDAR--- 439
PN+ +E+ VP A LTYPE VT YN ++++ VINGP PGA+++ +NED
Sbjct: 496 PNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHI--QNEDGTLIS 553
Query: 440 -RNLRYGDRVKLAKQL------------QYGDVVE------RHIEDGDVVLFNRQPSLHR 480
L R LA QL Y ++ RH+ +GD+++ NRQP+LH+
Sbjct: 554 LMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHK 613
Query: 481 LSILSHYAKIRPW-RTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 539
S+++H A+I P +T R++ C YNADFDGDEMN+H PQ+ AR+EA + +
Sbjct: 614 PSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQY 673
Query: 540 LTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLL--SMMSDSNLQFD---IPPPS 594
L P SG+P+ QD + ++ KD+F+ R + QLL ++ D + PP+
Sbjct: 674 LVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPPA 733
Query: 595 IMKPHYLWTGKQVFS---LLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVL 651
I +P WTGKQ+ S L +KPS + +NL +K KV P K P+ +G VL
Sbjct: 734 IQRPGIYWTGKQIISSVLLNLKPSDRPG--LNLKSKAKV---PGKYWSPDS---EEGSVL 785
Query: 652 IRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIG 711
+L G++DKS G + +++ YGP+ A + ++ +++L Y RGF+
Sbjct: 786 FDDGELLCGILDKSSFG-ASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCR 844
Query: 712 INDVTPGSDLKQKKEQMVESAYA------------KCDELIDLFNKGKLETQPGCNEEQT 759
++D+ + Q++E+ + D I L N E + Q
Sbjct: 845 MDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDEKLQG 904
Query: 760 LEAKIGGLLSKVREEVGEVCIRELDNL------NAPLIMATCGSKGSTLNVSQMVAVVGQ 813
L+A + G ++ + + CI D L N M G+KGS +NVSQ+ ++GQ
Sbjct: 905 LDAAMKGKMNGLTSSIINKCIP--DGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQ 962
Query: 814 QIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDT 873
Q + G RVP +SLP F + +S GF+ + F +G++P E+ FH ++GREGL+DT
Sbjct: 963 QELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDT 1022
Query: 874 AVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLDPLDMEGNAQPVNF 933
AVKT+ +GY+ R LMK LE L QYD+TVR S IVQF YG D LD + Q F
Sbjct: 1023 AVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQ---F 1079
Query: 934 NRSWTHANNLTLNDNSPGLLPYQIIAETNVILQPLENKLKRYDNIGQELRKEDEHKDEYI 993
S + +L + Y++ +L ++++ + ++ K+ D +
Sbjct: 1080 EFSAKNYKSL--------IQKYKV----KSVLSAVDSETA--SSYAKKALKKPYKYDPVL 1125
Query: 994 DQFDAERSFYQSLREFMTEKALTLASLRGERGLKELVDEPAEELREFNWDENVPASITIA 1053
D++ R L S + +R + E + ++L + + S+
Sbjct: 1126 DKYPPSR-------------YLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSL--- 1169
Query: 1054 LNQLCKISKILVQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1113
LN+ KF ++ +Y ++ V+PG +VG + +QSIGEP TQMTL TFHFAG
Sbjct: 1170 LNE---------SKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFG 1220
Query: 1114 SMNVTLGVPRIKEII-NASKVISTPIINAVLVND--NDERAARVVKGRVEKTLLSDV--- 1167
+ NVTLG+PR++EII AS I TP + + +ND +D+RA+ K V K +LS+V
Sbjct: 1221 AKNVTLGIPRLREIIMTASANIQTPTM-TLRLNDGVSDKRASAFCK-EVNKLVLSEVVRQ 1278
Query: 1168 -----------------------SFYVQDIYRDNMAFLQIKIDSETIEKLQLELTLEDIV 1204
Y +D Y+D LQ +I+S T L++ I
Sbjct: 1279 VRVTEKISGQGSDEQSKTYAIRLDLYSRDEYQDEYGVLQEEIES-TFSNRFLKILNRIIK 1337
Query: 1205 VAIAKAPKLKIGTNDISI 1222
+AK+ + K G D ++
Sbjct: 1338 SYLAKSKQRKSGGKDDTV 1355
Score = 75.9 bits (185), Expect = 4e-13
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 1249 PEPNEVFYRMQQLRRALPHIVVKGFSDISRAVINIRD---DGKRELLVEGYGLRDVMTTD 1305
P E + + +A V+ I+R D D +++ EG L+ +
Sbjct: 1497 PINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFY 1556
Query: 1306 GVIG-SKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKG 1364
I + TN I + + G+EAAR+ I++E+ +G++VDPRH+ L+ D MT++G
Sbjct: 1557 NEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEG 1616
Query: 1365 EVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTG 1424
R G+ + S SFE T L +AA D + S +++G+ + GTG
Sbjct: 1617 GYKAFNRMGI-EYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTG 1675
Query: 1425 SFKV 1428
SF +
Sbjct: 1676 SFDI 1679
Score = 62.4 bits (150), Expect = 5e-09
Identities = 37/117 (31%), Positives = 51/117 (42%), Gaps = 2/117 (1%)
Query: 12 KIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTCH 71
+IK + F D+ S +I L LDN GG D +G + C TCH
Sbjct: 10 EIKSVKFGIYDVDDVEKISVKQIVNPVL--LDNLNHPTNGGLYDLALGPYLKNSVCATCH 67
Query: 72 GNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELR 128
+ C GHFGHI L +P +H +F +L+S C C LS+ F L+
Sbjct: 68 LDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLK 124
>CE22157 [K] KOG0262 RNA polymerase I large subunit
Length = 1737
Score = 393 bits (1010), Expect = e-108
Identities = 307/996 (30%), Positives = 479/996 (47%), Gaps = 132/996 (13%)
Query: 264 PPVCIRPSVMMQDSPASNEDDLTVKL------TEIVWTSSLIKAG------------LEK 305
PP RP M + A ED T+ L TE + SLI G +
Sbjct: 361 PPKKFRPIRMFKG--AQYEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVR 418
Query: 306 GISINNMMEQWDYLQLAV-AMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRG 364
G +IN M YLQL + A I +N +G K Q L+ KQG FR
Sbjct: 419 GKTINAQMHD-AYLQLQLRANAIFDQDLNKGDRDSIAGIK--------QILEKKQGLFRM 469
Query: 365 NLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKV 424
++ GKRV+F+ R+VI+PDP L IDE+ +PD AK LT+ E V +N ++++ L+ GP
Sbjct: 470 HMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQ 529
Query: 425 HPGANYLLK----------KNEDARRNLRYGDRVKLA--KQLQYGDVVERHIEDGDVVLF 472
HPGAN+ ++ K E+ +R ++ + A + L+ V RH+++GD+++
Sbjct: 530 HPGANFFVEPSGKKTMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMM 589
Query: 473 NRQPSLHRLSILSHYAKIRPW-RTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAIN 531
NRQPSLH+ SIL H A++ R R+N C YNADFDGDEMN H+ Q+ A+ E
Sbjct: 590 NRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVRE 649
Query: 532 LMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQL-LSMMSDSNLQFDI 590
+ V +N L PK P++ QD + L+S +D F ++ L L+ + + + +I
Sbjct: 650 IANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEI 709
Query: 591 PPPSIMKPHYLWTGKQVFSLLIK---PSRKSPVVINLDAKNKVYLP---PPKKEYPNEMS 644
PPP+I+ P LWTGKQV + ++K P K +INLD K K L P + P +
Sbjct: 710 PPPTILYPKRLWTGKQVITTIVKNCIPDGKP--LINLDGKAKTPLSCWIVPGFDAP-QFD 766
Query: 645 QNDGFVLIRGSNILSGVMDKSVLGD---GKKHSVFYTILRDYGPNEAAQAMNRMAKLCAR 701
++ V+ R +L GV+DK+ G G H F YG Q ++ ++L
Sbjct: 767 MSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFEL----YGHRCGVQLLSCFSRLFTT 822
Query: 702 YLGNRGFSIGINDVTPGSDLKQKKE-----------QMVESAYAKCDELIDLFNKGKLET 750
YL GF++G+ D+ D K++ Q+V++A+ D K L
Sbjct: 823 YLQFHGFTLGVADILVVKDADGKRKEAVMESRTIGNQVVKTAFGLPDTATPAEIKRTLAA 882
Query: 751 QPGCN------EEQTLEAKIGGLLSKVREEVGEVCIR----ELDNLNAPLIMATCGSKGS 800
CN + + L+ + ++K + + + C+ L NA +M G+KGS
Sbjct: 883 TY-CNPRGQGTDVKMLDFGMKQGIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGS 941
Query: 801 TLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFL 860
+N Q+ +GQ + G R+ R+LP F +P++ G++ F +G++P E
Sbjct: 942 AVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELF 1001
Query: 861 FHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLD 920
FH ++GREGL+DTAVKT+ +GY+ R ++K LE + YD+TVR ++QF YG DG+D
Sbjct: 1002 FHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMD 1061
Query: 921 PLDMEG-NAQPVNFNRSWTHANNLTLNDNSPGLLPYQI-IAETNVILQPLENKLKRYDNI 978
N + + F A +TL G+ I ET KRY I
Sbjct: 1062 TTKATFLNKKTMPFLEDNLEA--VTLASKPEGVTDADFGIKETE----------KRYKKI 1109
Query: 979 GQELRKEDEHKDEYIDQFDAERSFYQSLREFMTEKALTLASLRGERGLKELVDEPAEELR 1038
+ +K ++ + ++S++ + F E + +R L + EE
Sbjct: 1110 VKWKKKAEKS-----GKSGTKKSYFSAFTNFSAEH----IGMEKKRILAMWFELSLEERE 1160
Query: 1039 EF--NWDENVPASITIALNQLCKI----SKIL--VQKFLSIAISKYH------------- 1077
++ + P ++ N CK+ K+L ++ F + + K
Sbjct: 1161 QYARGIPKKCPEAVDERFNPTCKLGALPEKMLDEIEGFCTRRVKKVDDEEPPKEVLKRTL 1220
Query: 1078 -----RARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NAS 1131
R+ +PG VG + AQSIGEP TQMTL TFHFAG MNVTLG+PR++EI+ AS
Sbjct: 1221 YWKGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTAS 1280
Query: 1132 KVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDV 1167
K I+TP + ++ +K +++ L +
Sbjct: 1281 KSIATPSASIAVIAGTSRDRIDSIKRELDRVYLKQL 1316
Score = 61.6 bits (148), Expect = 9e-09
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 28/259 (10%)
Query: 1187 DSETIEKLQLE---LTLEDIVVAIAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMKSIS 1243
DSE ++K L+ T E ++V ++ ++ + +IS + + D KS K
Sbjct: 1471 DSEDVKKEGLDGEDQTTEPLLVNSSRIQSVQRLSENIS---------SYTYDVKSNKWCE 1521
Query: 1244 TAMKEPEPNEVFYRMQQL-RRALPHIVVKGFSDISRAVINIRDDGKRELLV---EGYGLR 1299
+ P N+ + + + + +V I R V +E+ + +G L
Sbjct: 1522 VVFELPLRNKTKMDVSSIVEKEVELFIVHQTPGIERCVETTEQKNGKEMTILQTQGVNLA 1581
Query: 1300 ------DVMTTDGVIGSKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHI 1353
DV+ + V + N ILE Y G+EA I E++ + +G+ V RH+
Sbjct: 1582 AFFKHADVLDVNSVYSNDL--NLILENY---GVEACSKAITTEMNNVFAVYGIEVSKRHL 1636
Query: 1354 QLLGDVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECI 1413
L D MT+ G++ R G S LQ +FE T L +A + + D V S +
Sbjct: 1637 SLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARL 1695
Query: 1414 ILGQTMSIGTGSFKVVKNT 1432
++G GTGSF ++ +T
Sbjct: 1696 VMGALPRGGTGSFDLLLDT 1714
Score = 53.9 bits (128), Expect = 2e-06
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 51 GGALDPRMGVSSSQAECTTCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGC 110
GG DP +G ++ C TC+ C GH GHI+LA+PVF+ F+ T +L+ C C
Sbjct: 51 GGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHC 110
Query: 111 GALLLSEE--DKRKFLTELR 128
L + + R L +LR
Sbjct: 111 HRLTCKGDGVNARMLLAQLR 130
>ECU04g1400 [K] KOG0262 RNA polymerase I large subunit
Length = 1395
Score = 381 bits (979), Expect = e-105
Identities = 293/955 (30%), Positives = 468/955 (48%), Gaps = 117/955 (12%)
Query: 14 KGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTCHGN 73
K ISF + S +I S +E+ FD G + GG D RMG + C TC+ +
Sbjct: 8 KNISFGSYSDEEIERNSCMEVVVPGCFD-KFGHPIR-GGLYDLRMGPLDLSSNCKTCNLS 65
Query: 74 LASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKR----KFLTELRR 129
+C GHFGHIKL+ V + +F + I++ C C ++ D+ KF L
Sbjct: 66 FLNCPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRITNYDRLILFCKFSLLLNG 125
Query: 130 PGMDNLRRM---------------------------------NILKKILDQCKKQRRCFE 156
++L R+ ++ + L +R+C
Sbjct: 126 EEAEDLDRLYMVSEEEELYKIVSERIENAKKNRSEPLMESHQEVVHRFLQNAGSRRKCVR 185
Query: 157 CGELNXXXXXXXXXXXXXXLKIIHDTFRWVGKKSAPEKEQWIGDWKQVLENNPELERYVK 216
CG N +K++ D + EK+ E+ +LE
Sbjct: 186 CGHSN------PKIVKGAKMKVLKDL------RKGNEKD----------EDGKDLE---- 219
Query: 217 RCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQD 276
L+P V L + N+ +L I+S P + LP P RP +++
Sbjct: 220 ----FLSPDAVRELMDDLFSNEADL--IESIFFRRDPGMFFISNLPVIPNRFRPMIVLDG 273
Query: 277 SPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPSM 336
A N T+ L +I+ S L+ L W LQ A+ ++ +++
Sbjct: 274 KKAENFQ--TLYLNDILRVSVLVTKDL----------SYWPELQAAILSSFDNKNISK-- 319
Query: 337 LPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 396
S T+ P G Q L+ K G FR N+ GKRV+F+ RTVISPDPNL E+ +P
Sbjct: 320 ---WSRTRMVP-PGHKQILERKDGLFRRNIMGKRVNFAARTVISPDPNLETREIGIPLVF 375
Query: 397 AKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLLKKNEDARRNLRY---GDRVKLAKQ 453
A+ LT+PE+ +N +L++ V+NGP +PG+ YL ++ D +L + R LA Q
Sbjct: 376 AEALTFPERAASFNVDRLKKAVVNGP-TYPGSLYL--QDGDVMLSLAHMPDEKRYALANQ 432
Query: 454 LQYG-DVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI-RPWRTFRLNECVCTPYNADFD 511
L G VV RH+ DGDVVL NRQP+LHR SI++H ++ R RT R++ C YNADFD
Sbjct: 433 LLDGKKVVWRHLVDGDVVLMNRQPTLHRPSIMAHKCRVLRKERTLRMHYANCKSYNADFD 492
Query: 512 GDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDR 571
GDEMN+H PQ + AE+ +++ +N L P +G+PI QD I +++ KDSFF
Sbjct: 493 GDEMNVHFPQNYASEAESRHIVMNDSNYLVPTNGKPIRGLVQDHIVIVTVLTMKDSFFSE 552
Query: 572 AQLTQLLSM-MSDSNLQFDIPPPSIMKPHYLWTGKQVFSLLIKPSRKSPVVINLDAKNKV 630
L++ +SD + D P I+KP L++G+QV S ++K +V+N++ + V
Sbjct: 553 EDYFTLVNAGLSDRRIVLD--RPCIVKPARLYSGRQVISTILK---NLGLVVNIEIETNV 607
Query: 631 YLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQ 690
PK + + + IR NI++G++DK+ LG K S+ + G +
Sbjct: 608 ----PKNAWREHSEER--ILRIREGNIVTGILDKNSLGPTFK-SLIHACGEIKGFATSND 660
Query: 691 AMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLET 750
+ + + RYL GF+IGI+D+ + +K+ ++V + EL + + +
Sbjct: 661 LLTYIGWVGNRYLLMYGFTIGIDDLLLDKEADKKRREVVRVKDQEAKELQRRYVEANPDF 720
Query: 751 QPGCNEEQTLEAKIGGLLSKVREEVGEVCI-----RELDNLNAPLIMATCGSKGSTLNVS 805
+++ L++ + ++ V E+ +V + + N LI+AT GSKGS +N+S
Sbjct: 721 YLYADKKAYLDSVMRTEMNSVTSEIVKVSVPSGLQKSFPENNMELIIAT-GSKGSIVNLS 779
Query: 806 QMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAIS 865
Q+ +GQQ + G RVP ++LP F +P S G++ + F +G+ P++ FH ++
Sbjct: 780 QISGALGQQELEGQRVPIMASGKTLPCFAALDPSPSSGGYIYHRFLTGIDLPQYFFHCMA 839
Query: 866 GREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGLD 920
GREGL+DTA+KTA +GY+ R L+K +E+ +YD +VR ++QF YG DGLD
Sbjct: 840 GREGLIDTAIKTANSGYLQRCLIKHMEEAKVEYDMSVRIGKR-VIQFMYGEDGLD 893
Score = 82.0 bits (201), Expect = 6e-15
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 4/76 (5%)
Query: 1065 VQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1124
+++FL+ +Y + +PG +VG I AQS+GEP TQMTL TFH AGV + NVTLGVPR+
Sbjct: 946 LRRFLA---DRYICSLADPGESVGVIAAQSVGEPSTQMTLNTFHLAGVGAKNVTLGVPRL 1002
Query: 1125 KEI-INASKVISTPII 1139
+EI I ASK I TP+I
Sbjct: 1003 REILITASKSIRTPLI 1018
Score = 77.0 bits (188), Expect = 2e-13
Identities = 44/119 (36%), Positives = 64/119 (52%), Gaps = 1/119 (0%)
Query: 1313 KTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRF 1372
++N I +VY LG+EAAR IINE+ +G+S+D RH+ L+ D MT KG +R
Sbjct: 1271 ESNDIYDVYLTLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIADYMTRKGSYSPFSRH 1330
Query: 1373 GLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVKN 1431
GL DS +Q SFE + AA + D + S + +G + GTG F ++ N
Sbjct: 1331 GLG-ADDSPIQRISFESCYSNFKTAATFHLEDKLSNPSASLTVGNPVRCGTGCFDLIHN 1388
>At3g57660 [K] KOG0262 RNA polymerase I large subunit
Length = 1670
Score = 360 bits (925), Expect = 7e-99
Identities = 245/791 (30%), Positives = 391/791 (48%), Gaps = 113/791 (14%)
Query: 221 DLNPLKVLNLFKQIKPND---CELLGIDSTSKSGRPETYIWRYLPA---PPVCIRPSVMM 274
DL P +V N+ K + N+ C +G D Y +L + PP RP
Sbjct: 301 DLLPSEVRNILKHLWQNEHEFCSFIG-DLWQSGSEKIDYSMFFLESVLVPPTKFRPPTTG 359
Query: 275 QDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNP 334
DS E TV L +++ +++++ + + ++ +W LQ +V + +S +
Sbjct: 360 GDSVM--EHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTATV 417
Query: 335 SMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPD 394
SSG CQ L+ K+G FR + GKRV+ + R+VISPDP ++++++ +P
Sbjct: 418 QSQRDSSG--------ICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPP 469
Query: 395 RVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYL--------LKKNEDARRNL---- 442
A LTYPE+VT +N KL++ +INGP +HPGA + L E ARR +
Sbjct: 470 CFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKL 529
Query: 443 --RYGDRVKLAKQLQY---GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI-RPWRTF 496
G +L K G V RH+ DGD+VL NRQP+LH+ S+++H ++ + +T
Sbjct: 530 LSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTL 589
Query: 497 RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFI 556
RL+ C+ YNADFDGDEMN+H PQ E +RAEA N++ N P +GEP+ A QD I
Sbjct: 590 RLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHI 649
Query: 557 TGSYLISHKDSFFDRAQLTQLL--------------------SMMSDSNLQFDIPPPSIM 596
S L++ +D+F D+ QLL M+S S+ + P+I+
Sbjct: 650 VSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAIL 709
Query: 597 KPHYLWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLP----------------PPKKEYP 640
KP LWTGKQV + ++ K ++ K+ + KKE
Sbjct: 710 KPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEID 769
Query: 641 NEMSQ--NDGFVLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKL 698
Q N+ + IR + + GV+DK+ D + + +T+ YG N A ++ ++L
Sbjct: 770 ESWKQNLNEDKLHIRKNEFVCGVIDKAQFAD---YGLVHTVHELYGSNAAGNLLSVFSRL 826
Query: 699 CARYLGNRGFSIGINDVTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQ 758
+L GF+ G++D+ D+ +++ + ++ +C+ + + L G + +
Sbjct: 827 FTVFLQTHGFTCGVDDLIILKDMDEERTKQLQ----ECENV----GERVLRKTFGIDVDV 878
Query: 759 TLEAK-IGGLLSKVREEVGEVCIRELD----------------------------NLNAP 789
++ + + + ++ E GE + LD N
Sbjct: 879 QIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCI 938
Query: 790 LIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNS 849
+M G+KGS +N Q+ + +GQQ + G RVP ++LP F +P++ GF+ +
Sbjct: 939 SLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDR 998
Query: 850 FFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGI 909
F SGL P E+ FH ++GREGLVDTAVKT+ +GY+ R LMK+LE L YD TVR + I
Sbjct: 999 FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSI 1058
Query: 910 VQFTYGGDGLD 920
+QF YG DG+D
Sbjct: 1059 IQFQYGEDGVD 1069
Score = 87.4 bits (215), Expect = 1e-16
Identities = 43/103 (41%), Positives = 64/103 (61%), Gaps = 1/103 (0%)
Query: 1066 QKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1125
++ L + SK+ + +PG VG + AQS+GEP TQMTL TFH AG MNVTLG+PR++
Sbjct: 1137 EELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQ 1196
Query: 1126 EII-NASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDV 1167
EI+ A+ I TPI+ L+ + A + R+ K ++D+
Sbjct: 1197 EILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADI 1239
Score = 71.6 bits (174), Expect = 8e-12
Identities = 40/117 (34%), Positives = 63/117 (53%)
Query: 1314 TNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFG 1373
+N I ++ ++ G+EAAR II EI++ ++G+SV RH+ L+ D MT+ G ++R G
Sbjct: 1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMG 1609
Query: 1374 LAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVK 1430
S +FE T + AA Y + D +E S I LG GTG F +++
Sbjct: 1610 GIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQ 1666
Score = 60.1 bits (144), Expect = 3e-08
Identities = 31/120 (25%), Positives = 58/120 (47%), Gaps = 2/120 (1%)
Query: 9 APKKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECT 68
A + ++ + FS ++ D+ S +++++ L D N + GG D ++G + C
Sbjct: 23 ASQVVESVRFSFMTEQDVRKHSFLKVTSPILHD--NVGNPFPGGLYDLKLGPKDDKQACN 80
Query: 69 TCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELR 128
+C +C GH GHI+L P++H F LQ C C + ED + +++L+
Sbjct: 81 SCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLK 140
>Hs7661686 [K] KOG0262 RNA polymerase I large subunit
Length = 1717
Score = 342 bits (876), Expect = 3e-93
Identities = 228/616 (37%), Positives = 329/616 (53%), Gaps = 51/616 (8%)
Query: 350 GFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRY 409
G Q L+ K+G FR ++ GKRVD + R+VI PD ++ +E+ +P A LTYP+ VT +
Sbjct: 416 GIRQILEKKEGLFRKHMMGKRVDSTARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPW 475
Query: 410 NKHKLQQLVINGPKVHPGANYLLKKNEDARRN----LRYGDRVKLAKQL----------Q 455
N +L+Q VINGP VHPGA+ ++ NED R + R +AKQL Q
Sbjct: 476 NVQELRQAVINGPNVHPGASMVI--NEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQ 533
Query: 456 YGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRPW-RTFRLNECVCTPYNADFDGDE 514
+V RH+++GD++L NRQP+LHR SI +H A+I P + RL+ C YNADFDGDE
Sbjct: 534 GTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDE 593
Query: 515 MNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRAQL 574
MN H PQ+E RAEA L L PK G+P+ QD + ++ + FF R
Sbjct: 594 MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHY 653
Query: 575 TQLLSM-MSDSNLQFDIPPPSIMKPHYLWTGKQVFS-LLIKPSRKSPVVINLDAKNKVYL 632
+L+ ++D + + PSI+KP LWTGKQV S LLI + + +NL K K+
Sbjct: 654 MELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITG 713
Query: 633 PPPKKEYP------NEMSQNDGFVLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYGPN 686
KE P N S + V+IR +L GV+DK+ G + + + YG
Sbjct: 714 KAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSA-YGLVHCCYEIYGGE 772
Query: 687 EAAQAMNRMAKLCARYLG-NRGFSIGIND--VTPGSDLKQKK---------EQMVESAY- 733
+ + + +A+L YL RGF++G+ D V P D+K+++ Q V +A
Sbjct: 773 TSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKRDVKRQRIIEESTHCGPQAVRAALN 832
Query: 734 ----AKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCI-----RELD 784
A DE+ + L + ++ K ++ E+ + C+ R+
Sbjct: 833 LPEAASYDEVRGKWQDAHLGKDQ--RDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFP 890
Query: 785 NLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKG 844
N +M G+KGST+N Q+ ++GQ + G P +SLP F TP++ G
Sbjct: 891 E-NTLQLMVQSGAKGSTVNTMQISCLLGQIELEGRSTPLMASGKSLPCFEPYEFTPRAGG 949
Query: 845 FVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRT 904
FV F +G+ PPEF FH ++GREGLVDTAVKT+ +GY+ R ++K LE L QYD TVR
Sbjct: 950 FVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRD 1009
Query: 905 SSNGIVQFTYGGDGLD 920
S +VQF YG DGLD
Sbjct: 1010 SDGSVVQFLYGEDGLD 1025
Score = 86.7 bits (213), Expect = 3e-16
Identities = 46/109 (42%), Positives = 71/109 (64%), Gaps = 2/109 (1%)
Query: 1061 SKILVQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1120
S++ + + ++ K+ R+ EPG AVG + AQSIGEP TQMTL TFHFAG MNVTLG
Sbjct: 1186 SELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLG 1245
Query: 1121 VPRIKEIIN-ASKVISTPIINAVLVNDNDE-RAARVVKGRVEKTLLSDV 1167
+PR++EI+ AS I TP+++ ++N + + +K ++ + L +V
Sbjct: 1246 IPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEV 1294
Score = 71.2 bits (173), Expect = 1e-11
Identities = 53/182 (29%), Positives = 91/182 (49%), Gaps = 8/182 (4%)
Query: 1253 EVFYRMQQLRRALPH-IVVKGFSDISRAVINIRDDGKRE----LLVEGYGLRDVMTTDGV 1307
++ + M L +L H V+ I+R ++N + K E L EG L ++ V
Sbjct: 1533 KINFDMSSLVVSLAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEV 1592
Query: 1308 IG-SKTKTNHILEVYDVLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEV 1366
+ + +N I + + GIEA R I EI + +G++VDPRH+ L+ D M ++G
Sbjct: 1593 LDLRRLYSNDIHAIANTYGIEALR-VIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVY 1651
Query: 1367 LGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSF 1426
+ RFG+ + S LQ +FE + L A +D + S C+++G+ + GTG F
Sbjct: 1652 KPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLF 1710
Query: 1427 KV 1428
++
Sbjct: 1711 EL 1712
Score = 58.5 bits (140), Expect = 7e-08
Identities = 39/137 (28%), Positives = 65/137 (46%), Gaps = 2/137 (1%)
Query: 11 KKIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTC 70
++++GISF SA ++ S I+ D SA G D +G + S+ C+TC
Sbjct: 10 RRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSAN--GLYDLALGPADSKEVCSTC 67
Query: 71 HGNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEEDKRKFLTELRRP 130
+ ++C GH GHI+L L V++ F +L+ C C L L +LR
Sbjct: 68 VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVL 127
Query: 131 GMDNLRRMNILKKILDQ 147
+ L+ + L++IL +
Sbjct: 128 EVGALQAVYELERILSR 144
>At1g63020_1 [K] KOG0260 RNA polymerase II large subunit
Length = 1316
Score = 190 bits (483), Expect = 1e-47
Identities = 169/604 (27%), Positives = 277/604 (44%), Gaps = 100/604 (16%)
Query: 366 LSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVH 425
L GKR D + RTV+ DP+L ++E+ +P+ +AK L E + + NK +L
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERLV---------- 362
Query: 426 PGANYLLKKNEDARRNLRYGDRVKLAK--QLQYGDVVERHIEDGDVVLFNRQPSLHRLSI 483
+++ ++ ++R GDR+ + LQ GD + R + DGD VL NR PS+H+ S+
Sbjct: 363 --TSFVPTLLDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLMDGDTVLMNRPPSIHQHSL 420
Query: 484 LSHYAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 542
++ +I P + LN C P+ DFDGD ++ +VPQ+ +A+ E L+ + L+
Sbjct: 421 IAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINR 480
Query: 543 KSGEPIIAATQDFITGSYLIS-HKDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKP--- 598
++G +++ QD +T +YL++ K+ + +RAQ+ QL F +PPP+I+K
Sbjct: 481 QNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL-----QMYCPFQLPPPAIIKASPS 535
Query: 599 --HYLWTGKQVFSLLIKPSRKSPVVINLDAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSN 656
WTG Q+F +L PP +Y ++ V++
Sbjct: 536 STEPQWTGMQLFGMLF---------------------PPGFDYTYPLNN----VVVSNGE 570
Query: 657 ILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGINDVT 716
+LS + L DG+ + + + D G + + ++ +++L RG S+ + D+
Sbjct: 571 LLSFSEGSAWLRDGEGNFIERLLKHDKG--KVLDIIYSAQEMLSQWLLMRGLSVSLADLY 628
Query: 717 PGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPG----------------------C 754
SDL+ +K E +Y E + NK +L + C
Sbjct: 629 LSSDLQSRKNLTEEISYG-LREAEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFC 687
Query: 755 NEEQ---TLEAKIGGLLSKVREEVGEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVV 811
E Q TL +V + R D N+ LIM+ GSKG+ + Q +
Sbjct: 688 YERQKSATLSELAVSAFKDAYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCI 747
Query: 812 GQQIISGNRVPDGFQDRSL-------PHFP------KNSKTPQSK---GFVRNSFFSGLS 855
G Q S + GF R L P+ P K+S T +S G + NSF +GL+
Sbjct: 748 GLQN-SAVSLSFGFP-RELTCAAWNDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLN 805
Query: 856 PPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS-SNGIVQFTY 914
P E H+++ R+ + G +SRRLM + D+ YD TVR S N +VQFTY
Sbjct: 806 PLESFVHSVTSRDS--SFSGNADLPGTLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTY 863
Query: 915 GGDG 918
DG
Sbjct: 864 ETDG 867
>At2g40030 [K] KOG0260 RNA polymerase II large subunit
Length = 888
Score = 158 bits (399), Expect = 7e-38
Identities = 169/718 (23%), Positives = 288/718 (39%), Gaps = 75/718 (10%)
Query: 211 LERYVKRCMDDLNPLKVLNLFKQIKPNDCELLGIDSTSKSGRP-ETYIWRYLPAPPVCIR 269
LERY R D + K+I E T+K P E YI YLP PP C+
Sbjct: 111 LERYGYRYGSDYTRPLLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLS 170
Query: 270 PSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMYIN- 328
+ D ++L +++ IK+ + + + + V Y+
Sbjct: 171 VPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQV 230
Query: 329 ----SDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPN 384
+ N M G S K + R K FS R+VI+ D
Sbjct: 231 RGTAKAARNIDMRYGVSKISDS------SSSKAWTEKMRTLFIRKGSGFSSRSVITGDAY 284
Query: 385 LSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYLLKKNEDARRNLRY 444
++EV +P +A+ +T+ E+V+ +N+ LQ+LV + L
Sbjct: 285 RHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLV---------DDKLCLSYTQGSTTYSL 335
Query: 445 GDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCT 504
D K +L+ G VV R + DGDVV NR P+ H+ S+ + + T ++N +C+
Sbjct: 336 RDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCS 395
Query: 505 PYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISH 564
P +ADFDGD ++L PQ+ A+AE + L V+ LL+ +G+ I+ D + S +
Sbjct: 396 PLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLL-SLRVML 454
Query: 565 KDSFFDRAQLTQLLSMMSDSNLQFDIPPPSIMKPHYLWTGKQVFSLLIKPSRKSPVVINL 624
+ F D+A QL S +PPP++ K VF +L
Sbjct: 455 ERVFLDKATAQQLAMYGS-----LSLPPPALRKSSKSGPAWTVFQIL------------- 496
Query: 625 DAKNKVYLPPPKKEYPNEMSQNDGFVLIRGSNILSGVMDKSVLGDGKKHSVFYTILRDYG 684
+ +P +S L+ GS++L +G + + +I + G
Sbjct: 497 -----------QLAFPERLSCKGDRFLVDGSDLLKFDFGVDAMG-SIINEIVTSIFLEKG 544
Query: 685 PNEAAQAMNRMAKLCARYLGNRGFSIGINDVTPGSDLKQKKEQMVESAYAKCDELIDLFN 744
P E + + L L GFS+ + D++ + + ++ + + E+ + +
Sbjct: 545 PKETLGFFDSLQPLLMESLFAEGFSLSLEDLS----MSRADMDVIHNLIIR--EISPMVS 598
Query: 745 KGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCIRELDNLNAPLIMATCGSKGSTLNV 804
+ +L + E ++ + KV+E ++ N + S + +
Sbjct: 599 RLRLSYRD--------ELQLENSIHKVKEVAANFMLKSYSIRN----LIDIKSNSAITKL 646
Query: 805 SQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNS----KTPQSKGFVRNSFFSGLSPPEFL 860
Q +G Q+ + + F K + G V+ FF GL P E +
Sbjct: 647 VQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEM 706
Query: 861 FHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVR-TSSNGIVQFTYGGD 917
H+I+ RE +V ++ AE G + + LM L D+ D TVR T SN ++QF YG D
Sbjct: 707 AHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVD 764
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,719,188
Number of Sequences: 60738
Number of extensions: 3905727
Number of successful extensions: 10180
Number of sequences better than 1.0e-05: 23
Number of HSP's better than 0.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9937
Number of HSP's gapped (non-prelim): 80
length of query: 1457
length of database: 30,389,216
effective HSP length: 119
effective length of query: 1338
effective length of database: 23,161,394
effective search space: 30989945172
effective search space used: 30989945172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)