ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5541    suspect: LH   S     KOG4764  Function unknown                                               Uncharacterized conserved protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5541 1902105 1900930 -392 
         (392 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR363w [S] KOG4764 Uncharacterized conserved protein                 122   1e-27

>YDR363w [S] KOG4764 Uncharacterized conserved protein
          Length = 456

 Score =  122 bits (305), Expect = 1e-27
 Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 26/319 (8%)

Query: 95  SESDDSIHS--ELERFKEDQTPSINTQDEMFDFLKEVTSNAKNHA--DTHNNGKVTKRIY 150
           S S  SI S     ++K  ++  + T DE  DF KE+   AK        +     KR+Y
Sbjct: 141 SRSRSSIRSISPAGKYKRQKSSLLYTYDENDDFFKELAKEAKKSTTISKESTPDQRKRVY 200

Query: 151 NINFISTLEGSQDKRVNVKVTGNKTFESILPITIRTFIQSYKIPRRLRIFYTPAELVLFR 210
           NI F+S LEG+ +K V VKV G   F  ILP  +   ++SYKIP+ ++  Y    + L+ 
Sbjct: 201 NIKFLSKLEGTINKAVQVKVLGKYEFSKILPAALDGLMKSYKIPKVMKDIYKVENVTLYW 260

Query: 211 AGVEVLPFSNCDSLRIPKTVSEYETTVDLVIVHSADANNYKTEYKRIRESRLQSFLDESN 270
              ++L F  C+SL IP+      + +D+ IV    +  Y+  ++   ES+L+       
Sbjct: 261 NNAKLLTFMTCNSLHIPQDFENEVSDIDVTIV----SKEYEKNFEATLESKLKEEEAALL 316

Query: 271 IEEQDPLE---QPARDXXXXXXXXXXXSAPKLAERTDDVID---------LLDSDIESSN 318
           I+E+  +E   +  R+           S  K  E T ++ +         L +    S N
Sbjct: 317 IKERQEMERKLEKKRNEQEESEYREFESELKNVEETQEIKENDTVMNTKLLQEGGSLSGN 376

Query: 319 S------IRLTLIDKANKRTSISVWPNTTFTEIANRYKTISSLSEDANVLLIFDNEELNP 372
           S      +R+ L+ + NK+  + V  +T F++IA  Y+    L +   V L+FD++EL+ 
Sbjct: 377 SSSMEEVMRIALMGQDNKKIYVHVRRSTPFSKIAEYYRIQKQLPQKTRVKLLFDHDELDM 436

Query: 373 AATVLSEGLEEDDILEIKI 391
              +  + +E++D++++ I
Sbjct: 437 NECIADQDMEDEDMVDVII 455


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.310    0.129    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,475,106
Number of Sequences: 60738
Number of extensions: 820930
Number of successful extensions: 2133
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2130
Number of HSP's gapped (non-prelim): 1
length of query: 392
length of database: 30,389,216
effective HSP length: 108
effective length of query: 284
effective length of database: 23,829,512
effective search space: 6767581408
effective search space used: 6767581408
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)