ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5656 good U KOG0811 Intracellular trafficking, secretion, and vesicular transport SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5656 1943933 1944757 275
(275 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR036w [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 213 2e-55
SPBC31E1.04 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Synt... 81 1e-15
At5g16830 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntax... 59 7e-09
YOL018c [U] KOG0809 SNARE protein TLG2/Syntaxin 16 57 2e-08
Hs4507295 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntax... 56 6e-08
At4g17730 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntax... 54 3e-07
Hs20533698 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Synta... 53 5e-07
>YOR036w [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 288
Score = 213 bits (543), Expect = 2e-55
Identities = 107/247 (43%), Positives = 165/247 (66%), Gaps = 4/247 (1%)
Query: 10 QYRDSPEFEDCCDAISQDLFELNGSLSTMNHFVTALETNVSHGKSNTKVIDNINKKTVEL 69
++ DSPEF+ + ++ +LFE+NG +ST+ F L++ + G + KV++ INK++V
Sbjct: 19 RFSDSPEFQTLKEEVAAELFEINGQISTLQQFTATLKSFIDRGDVSAKVVERINKRSVAK 78
Query: 70 IDKSTKLVSSINENIHKVNELEESALDKPHLITREKLTRDAKFSVQEFKKYQQHFLEVTK 129
I++ L+ +N ++ K++ +EE++LDK +I REKL RD +S QEF+ Q+ F +V K
Sbjct: 79 IEEIGGLIKKVNTSVKKMDAIEEASLDKTQIIAREKLVRDVSYSFQEFQGIQRQFTQVMK 138
Query: 130 RINDMAKVALEDEEQNN--SLMDTVLREEEDEHAK--RTQVVIEREPINNEEFAYQQHLI 185
++N+ AK +LE E N +L+D R+ + + +Q+VIER+PINNEEFAYQQ+LI
Sbjct: 139 QVNERAKESLEASEMANDAALLDEEQRQNSSKSTRIPGSQIVIERDPINNEEFAYQQNLI 198
Query: 186 RERDQEISNIEQGITELNGIFKDXXXXXXXXXXXXDSIEANLYNVEDNTRNAANELSRAM 245
+RDQEISNIE+GITELN +FKD D+IEAN+Y DNT+ A++EL +AM
Sbjct: 199 EQRDQEISNIERGITELNEVFKDLGSVVQQQGVLVDNIEANIYTTSDNTQLASDELRKAM 258
Query: 246 RSGRSSS 252
R + +S
Sbjct: 259 RYQKRTS 265
>SPBC31E1.04 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 317
Score = 81.3 bits (199), Expect = 1e-15
Identities = 58/242 (23%), Positives = 108/242 (43%), Gaps = 27/242 (11%)
Query: 16 EFEDCCDAISQDLFELNGSLSTMNHFVTALETNVSHGKSNTKVIDNINKKTVELIDKSTK 75
+F +I+Q++ L G+ + ++ ++ ++N+ K E++++S +
Sbjct: 18 DFPALASSIAQEIHALRGNTAAIHRYL----------------VNNLTKNLHEVLEQSRE 61
Query: 76 LVSSINENIHKVNELEESAL-DKPHLITREKLTRDAKFSVQEFKKYQQHFLEVTKRINDM 134
L + ++ ++ ++++ ++ KLTRD + E ++ QQ + +
Sbjct: 62 LSQKVRSDLVRLANIKDTKYGEEASSFALSKLTRDFNTVLAELQRVQQKCAQ-----QES 116
Query: 135 AKVALEDEEQNNSLMDTVLREEEDEHAKRTQVVIEREP-----INNEEFAYQQHLIRERD 189
VA N + + EEE + +R+P I+N + YQQ LI ER
Sbjct: 117 DSVAAAQAALNQDVGQHFIEEEERNVSLSNNSSGQRQPLTESKISNSQLEYQQRLINERQ 176
Query: 190 QEISNIEQGITELNGIFKDXXXXXXXXXXXXDSIEANLYNVEDNTRNAANELSRAMRSGR 249
EI N+ QGI ELN IF+D +IE N+ N NT+NA+ +L A R
Sbjct: 177 GEIENLTQGINELNEIFRDLSTIINEQGELVTNIEYNVGNTSTNTKNASRQLQIANEHSR 236
Query: 250 SS 251
+
Sbjct: 237 KA 238
>At5g16830 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 279
Score = 58.9 bits (141), Expect = 7e-09
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 11/198 (5%)
Query: 64 KKTVELIDKSTKLVSSINENIH----KVNELEESAL----DKPHLITREKLTRDAKFSVQ 115
K T+EL DK K I+E + K+ E E+ L + I KL +D + ++
Sbjct: 61 KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120
Query: 116 EFKKYQQHFLEVTKRINDMAKVALEDEEQNNSL-MDTVLREEEDEHAKRTQVVIEREPIN 174
EF+K Q+ L + I V E N+ +DT + A Q +
Sbjct: 121 EFQKAQR--LAAEREITYTPVVTKEIPTSYNAPELDTESLRISQQQALLLQSRRQEVVFL 178
Query: 175 NEEFAYQQHLIRERDQEISNIEQGITELNGIFKDXXXXXXXXXXXXDSIEANLYNVEDNT 234
+ E + + +I ER+Q I IE I ++NG+FKD D I +NL N T
Sbjct: 179 DNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAAT 238
Query: 235 RNAANELSRAMRSGRSSS 252
A +L +A ++ RS+S
Sbjct: 239 TQATVQLRKAAKTQRSNS 256
>YOL018c [U] KOG0809 SNARE protein TLG2/Syntaxin 16
Length = 397
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/199 (21%), Positives = 97/199 (48%), Gaps = 18/199 (9%)
Query: 58 VIDNINKKTVELIDKSTKLVSSINENIHKVNELEESALDKPHLITREKLTRDAKFSVQ-- 115
+I++++ K ++++ K ++ + + I+ ++ L + LI + L + +Q
Sbjct: 114 LIEDLSFKVIQMLQKCYAVMKRL-KTIYNSQFVDGKQLSREELIILDNLQKIYAEKIQTE 172
Query: 116 --EFKKYQQHFLEVTKRINDMAKVALEDEEQNNSLMDTVLREEEDEHAKRTQVVIEREPI 173
+F+ Q ++L+ + +D+ + + +N L+D +EE+E A+ + ++ E
Sbjct: 173 SNKFRVLQNNYLKFLNK-DDLKPIRNKASAENTLLLD----DEEEEAAREKREGLDIEDY 227
Query: 174 NNEEFAYQQHL--------IRERDQEISNIEQGITELNGIFKDXXXXXXXXXXXXDSIEA 225
+ QQ L +RERD+EI+ + +G+ E++ IF++ D I+
Sbjct: 228 SKRTLQRQQQLHDTSAEAYLRERDEEITQLARGVLEVSTIFREMQDLVVDQGTIVDRIDY 287
Query: 226 NLYNVEDNTRNAANELSRA 244
NL N ++A EL++A
Sbjct: 288 NLENTVVELKSADKELNKA 306
>Hs4507295 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 261
Score = 55.8 bits (133), Expect = 6e-08
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 12/155 (7%)
Query: 101 ITREKLTRDAKFSVQEFKKYQQHFLEVTK----RINDMAKVALEDEEQNNSLMDTVLREE 156
I +++L + S+ F+K Q+ E K R+ ++V+ E ++ + V E
Sbjct: 88 IQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWES 147
Query: 157 EDEHAKRTQVVIEREPINNEEFAYQQHLIRERDQEISNIEQGITELNGIFKDXXXXXXXX 216
+ + QV ++ E I ++ LI ER+ I +E I ++N IFKD
Sbjct: 148 QTQ----PQVQVQDEEITEDDL----RLIHERESSIRQLEADIMDINEIFKDLGMMIHEQ 199
Query: 217 XXXXDSIEANLYNVEDNTRNAANELSRAMRSGRSS 251
DSIEAN+ N E + + A +LSRA R S
Sbjct: 200 GDVIDSIEANVENAEVHVQQANQQLSRAADYQRKS 234
>At4g17730 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 256
Score = 53.5 bits (127), Expect = 3e-07
Identities = 50/234 (21%), Positives = 103/234 (43%), Gaps = 17/234 (7%)
Query: 18 EDCCDAISQDLFELNGSLSTMNHFVTALETNVSHGKSNTKVIDNINKKTVELIDKSTKLV 77
+D ++ +F++N S+ST + V L T K ++ + ++K + + +LV
Sbjct: 27 QDTTQDVASGIFQINTSVSTFHRLVNTLGTP----KDTPELREKLHKTRLYI----GQLV 78
Query: 78 SSINENIHKVNELE-ESALDKPHLITREKLTRDAKFSVQEFKKYQQHFLEVTKRINDMAK 136
+ + + +E + + +++ I KL +D + ++EF+K Q+ E +
Sbjct: 79 KDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVH 138
Query: 137 VALEDEEQNNSLMDTVLREEEDEHAKRTQVVIEREP----INNEEFAYQQHLIRERDQEI 192
+S +D D+H ++ +++E + + + E A+ + +I ER+Q I
Sbjct: 139 KPSLPSSYTSSEIDV----NGDKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGI 194
Query: 193 SNIEQGITELNGIFKDXXXXXXXXXXXXDSIEANLYNVEDNTRNAANELSRAMR 246
I+Q I E++ IFKD D I ++ N T + L R R
Sbjct: 195 QEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQGKSHLVRHQR 248
>Hs20533698 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 269
Score = 52.8 bits (125), Expect = 5e-07
Identities = 48/237 (20%), Positives = 105/237 (44%), Gaps = 25/237 (10%)
Query: 16 EFEDCCDAISQDLFELNGSLSTMNHFVTALETNVSHGKSNTKVIDNINKKTVELIDKSTK 75
+F S ++ ++ + + + + ++ L T + ++K+ +N+ +L + +
Sbjct: 14 DFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK----QDSSKLQENLQ----QLQHSTNQ 65
Query: 76 LVSSINENIHKVNELE---ESALDKPHLITREKLTRDAKFSVQEFKKYQQHFLEVTK--- 129
L NE + ++ L ++ + + +E+L D ++ F+ Q+ E K
Sbjct: 66 LAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 125
Query: 130 -RINDMAKVALEDEEQNNSLMDTVLREEEDE-HAKRTQVVIEREPINNEEFAYQQHLIRE 187
R ++++ E+ ++ L+ EE ++ ++ +V I + + LI+E
Sbjct: 126 ARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLE---------LIKE 176
Query: 188 RDQEISNIEQGITELNGIFKDXXXXXXXXXXXXDSIEANLYNVEDNTRNAANELSRA 244
R+ I +E I ++N IFKD DSIEAN+ + E + A +L RA
Sbjct: 177 RETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA 233
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.310 0.127 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,226,638
Number of Sequences: 60738
Number of extensions: 524136
Number of successful extensions: 2550
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2547
Number of HSP's gapped (non-prelim): 7
length of query: 275
length of database: 30,389,216
effective HSP length: 105
effective length of query: 170
effective length of database: 24,011,726
effective search space: 4081993420
effective search space used: 4081993420
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)