ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5703 check: MH A KOG0329 RNA processing and modification ATP-dependent RNA helicase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5703 1959770 1961080 437
(437 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL084w [A] KOG0329 ATP-dependent RNA helicase 775 0.0
SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase 614 e-176
Hs4758112 [A] KOG0329 ATP-dependent RNA helicase 559 e-159
Hs21040371 [A] KOG0329 ATP-dependent RNA helicase 548 e-156
At5g11200 [A] KOG0329 ATP-dependent RNA helicase 545 e-155
At5g11170 [A] KOG0329 ATP-dependent RNA helicase 543 e-154
7296990 [A] KOG0329 ATP-dependent RNA helicase 535 e-152
CE03025 [A] KOG0329 ATP-dependent RNA helicase 528 e-150
Hs21040373 [A] KOG0329 ATP-dependent RNA helicase 313 3e-85
7297048 [J] KOG0327 Translation initiation factor 4F helicase su... 259 4e-69
CE01341 [J] KOG0327 Translation initiation factor 4F helicase su... 252 7e-67
SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 251 2e-66
Hs4758140 [A] KOG0326 ATP-dependent RNA helicase 248 1e-65
7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 248 1e-65
Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase ... 248 2e-65
Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase ... 248 2e-65
Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 245 8e-65
YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 243 3e-64
CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 243 4e-64
YDL160c [A] KOG0326 ATP-dependent RNA helicase 241 1e-63
7297629 [A] KOG0326 ATP-dependent RNA helicase 241 2e-63
At1g72730 [J] KOG0327 Translation initiation factor 4F helicase ... 239 6e-63
SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicas... 238 1e-62
SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase 237 3e-62
At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 236 5e-62
At3g13920 [J] KOG0327 Translation initiation factor 4F helicase ... 234 2e-61
YKR059w [J] KOG0327 Translation initiation factor 4F helicase su... 234 2e-61
YJL138c [J] KOG0327 Translation initiation factor 4F helicase su... 234 2e-61
At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 ... 233 4e-61
At2g45810 [A] KOG0326 ATP-dependent RNA helicase 232 9e-61
At1g54270 [J] KOG0327 Translation initiation factor 4F helicase ... 229 6e-60
CE00839 [A] KOG0326 ATP-dependent RNA helicase 228 1e-59
At3g61240 [A] KOG0326 ATP-dependent RNA helicase 227 3e-59
Hs14251212 [K] KOG4284 DEAD box protein 220 4e-57
At4g00660 [A] KOG0326 ATP-dependent RNA helicase 214 2e-55
7294824 [K] KOG4284 DEAD box protein 211 2e-54
Hs20149629 [A] KOG0330 ATP-dependent RNA helicase 210 4e-54
SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase 208 1e-53
7298752 [A] KOG0330 ATP-dependent RNA helicase 207 2e-53
CE00337 [A] KOG0330 ATP-dependent RNA helicase 201 2e-51
ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase 196 4e-50
SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase 194 2e-49
ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase 194 3e-49
YHR065c [A] KOG0330 ATP-dependent RNA helicase 192 8e-49
SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase 191 1e-48
At3g53110 [A] KOG0332 ATP-dependent RNA helicase 191 2e-48
CE01338 [J] KOG0327 Translation initiation factor 4F helicase su... 190 4e-48
Hs6005743 [A] KOG0332 ATP-dependent RNA helicase 189 7e-48
Hs8922886 [A] KOG0332 ATP-dependent RNA helicase 187 2e-47
CE28369 [A] KOG0335 ATP-dependent RNA helicase 185 1e-46
CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 in... 185 1e-46
CE24451 [A] KOG0335 ATP-dependent RNA helicase 185 1e-46
YLL008w [A] KOG0338 ATP-dependent RNA helicase 184 2e-46
YOR046c [A] KOG0332 ATP-dependent RNA helicase 184 3e-46
Hs19743937 [A] KOG0338 ATP-dependent RNA helicase 183 4e-46
CE07736 [A] KOG0335 ATP-dependent RNA helicase 182 1e-45
Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit 181 1e-45
Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit 181 1e-45
At5g14610 [A] KOG0331 ATP-dependent RNA helicase 181 1e-45
7298204 [A] KOG0335 ATP-dependent RNA helicase 181 2e-45
At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit 181 2e-45
At5g60990 [A] KOG0330 ATP-dependent RNA helicase 180 3e-45
At3g06480 [A] KOG0331 ATP-dependent RNA helicase 179 6e-45
7304081 [A] KOG0338 ATP-dependent RNA helicase 179 7e-45
At1g55150 [A] KOG0331 ATP-dependent RNA helicase 178 1e-44
SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune 177 3e-44
At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune 177 3e-44
At3g58570 [A] KOG0335 ATP-dependent RNA helicase 177 3e-44
ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase... 176 6e-44
SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase 176 8e-44
At2g42520 [A] KOG0335 ATP-dependent RNA helicase 176 8e-44
At3g01540 [A] KOG0331 ATP-dependent RNA helicase 175 1e-43
At1g31970 [A] KOG0331 ATP-dependent RNA helicase 175 1e-43
At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune 174 2e-43
At1g16280 [A] KOG0340 ATP-dependent RNA helicase 174 2e-43
7299061 [A] KOG0335 ATP-dependent RNA helicase 174 2e-43
At5g63120 [A] KOG0331 ATP-dependent RNA helicase 174 3e-43
7303950 [A] KOG0340 ATP-dependent RNA helicase 173 4e-43
YOR204w [A] KOG0335 ATP-dependent RNA helicase 173 5e-43
Hs22057246 [A] KOG0336 ATP-dependent RNA helicase 173 5e-43
YPL119c [A] KOG0335 ATP-dependent RNA helicase 172 9e-43
7298989 [A] KOG0336 ATP-dependent RNA helicase 172 1e-42
SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase 171 2e-42
At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune 171 2e-42
7294797 [A] KOG0339 ATP-dependent RNA helicase 171 2e-42
YNL112w [A] KOG0331 ATP-dependent RNA helicase 171 3e-42
CE25121 [A] KOG0335 ATP-dependent RNA helicase 170 4e-42
CE09012 [A] KOG0335 ATP-dependent RNA helicase 169 6e-42
7296891 [A] KOG0341 DEAD-box protein abstrakt 169 6e-42
At3g22330 [A] KOG0331 ATP-dependent RNA helicase 169 1e-41
Hs7662318 [A] KOG0334 RNA helicase 168 2e-41
CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit 168 2e-41
CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 168 2e-41
SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase 167 2e-41
Hs21327697 [A] KOG0332 ATP-dependent RNA helicase 167 2e-41
At3g22310 [A] KOG0331 ATP-dependent RNA helicase 167 2e-41
7295314 [A] KOG0331 ATP-dependent RNA helicase 167 2e-41
7293060 [A] KOG0334 RNA helicase 167 2e-41
HsM7019399 [A] KOG0332 ATP-dependent RNA helicase 167 3e-41
CE28485 [K] KOG4284 DEAD box protein 167 3e-41
At3g58510 [A] KOG0335 ATP-dependent RNA helicase 167 4e-41
At4g33370 [A] KOG0341 DEAD-box protein abstrakt 166 6e-41
Hs21071032 [A] KOG0341 DEAD-box protein abstrakt 166 8e-41
At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune 165 1e-40
Hs9507237 [A] KOG0335 ATP-dependent RNA helicase 164 2e-40
CE17559 [A] KOG0339 ATP-dependent RNA helicase 164 2e-40
7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit 164 2e-40
7290853 [A] KOG0331 ATP-dependent RNA helicase 163 4e-40
ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase 162 7e-40
CE27030 [A] KOG0338 ATP-dependent RNA helicase 162 7e-40
CE18785 [A] KOG0331 ATP-dependent RNA helicase 162 9e-40
At5g51280 [A] KOG0341 DEAD-box protein abstrakt 162 1e-39
ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase 161 2e-39
Hs11321632 [A] KOG0339 ATP-dependent RNA helicase 161 2e-39
SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase 160 3e-39
Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase 160 3e-39
Hs13775232 [A] KOG0331 ATP-dependent RNA helicase 160 5e-39
Hs22063157 [A] KOG0329 ATP-dependent RNA helicase 159 6e-39
Hs10346129 [A] KOG0336 ATP-dependent RNA helicase 159 6e-39
At1g71370 [A] KOG0345 ATP-dependent RNA helicase 158 1e-38
YGL078c [A] KOG0331 ATP-dependent RNA helicase 158 2e-38
YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 2e-38
ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1... 157 2e-38
CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune 157 3e-38
At1g20920 [A] KOG0334 RNA helicase 157 4e-38
CE25231 [A] KOG0343 RNA Helicase 156 7e-38
SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase 155 9e-38
Hs4758138 [A] KOG0331 ATP-dependent RNA helicase 155 9e-38
CE23832 [A] KOG0341 DEAD-box protein abstrakt 155 9e-38
CE28031 [A] KOG0334 RNA helicase 155 1e-37
CE27427 [A] KOG0334 RNA helicase 155 1e-37
7293369 [A] KOG0343 RNA Helicase 155 1e-37
YHR169w [A] KOG0340 ATP-dependent RNA helicase 154 2e-37
At1g77050 [A] KOG0337 ATP-dependent RNA helicase 154 2e-37
Hs13514813 [A] KOG0335 ATP-dependent RNA helicase 154 2e-37
At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune 154 2e-37
At2g47330 [A] KOG0339 ATP-dependent RNA helicase 153 4e-37
SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit 153 6e-37
Hs13514809 [A] KOG0335 ATP-dependent RNA helicase 152 7e-37
SPCC10H11.01 [A] KOG0334 RNA helicase 152 9e-37
Hs15316941 [A] KOG0344 ATP-dependent RNA helicase 152 9e-37
CE18221 [A] KOG0332 ATP-dependent RNA helicase 152 9e-37
CE18220 [A] KOG0332 ATP-dependent RNA helicase 152 9e-37
CE18219 [A] KOG0332 ATP-dependent RNA helicase 152 9e-37
At3g09720 [A] KOG0344 ATP-dependent RNA helicase 151 2e-36
7296646 [A] KOG0331 ATP-dependent RNA helicase 151 2e-36
Hs19923595 [A] KOG0337 ATP-dependent RNA helicase 150 4e-36
YGL171w [A] KOG0344 ATP-dependent RNA helicase 150 5e-36
7293941 [A] KOG0344 ATP-dependent RNA helicase 149 8e-36
7291960_2 [A] KOG0337 ATP-dependent RNA helicase 149 1e-35
Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune 148 1e-35
Hs13514831 [A] KOG0343 RNA Helicase 147 4e-35
At5g05450 [A] KOG0345 ATP-dependent RNA helicase 147 4e-35
SPBC4F6.07c [A] KOG0347 RNA helicase 145 9e-35
ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase 145 2e-34
YDL031w [A] KOG0337 ATP-dependent RNA helicase 144 3e-34
CE23814 [A] KOG0340 ATP-dependent RNA helicase 143 6e-34
At4g16630 [A] KOG0338 ATP-dependent RNA helicase 142 1e-33
YFL002c [A] KOG0345 ATP-dependent RNA helicase 140 4e-33
ECU10g1680 [A] KOG0343 RNA Helicase 140 5e-33
Hs13129006 [A] KOG0331 ATP-dependent RNA helicase 139 6e-33
7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune 139 6e-33
YJL033w [A] KOG0343 RNA Helicase 139 8e-33
CE27553 [A] KOG0337 ATP-dependent RNA helicase 139 8e-33
At5g62190 [A] KOG0331 ATP-dependent RNA helicase 138 2e-32
CE22474 [A] KOG0336 ATP-dependent RNA helicase 137 2e-32
At5g54910 [A] KOG0343 RNA Helicase 136 5e-32
7299006 [A] KOG0345 ATP-dependent RNA helicase 136 5e-32
SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase 135 9e-32
Hs13787209 [A] KOG0331 ATP-dependent RNA helicase 135 9e-32
At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune 135 1e-31
At3g09620 [A] KOG0334 RNA helicase 135 2e-31
At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune 135 2e-31
SPAC1093.05 [A] KOG0343 RNA Helicase 134 3e-31
SPCC1494.06c [A] KOG0346 RNA helicase 132 1e-30
YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit 130 5e-30
YBR237w [A] KOG0334 RNA helicase 129 9e-30
CE06239 [A] KOG0344 ATP-dependent RNA helicase 129 9e-30
CE03821 [A] KOG0345 ATP-dependent RNA helicase 129 9e-30
Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase ... 126 6e-29
CE11190 [A] KOG0347 RNA helicase 126 7e-29
CE11402 [A] KOG0334 RNA helicase 123 5e-28
CE29052 [A] KOG0335 ATP-dependent RNA helicase 122 8e-28
Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase... 122 1e-27
ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase 122 1e-27
At4g34910 [A] KOG0346 RNA helicase 121 2e-27
YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune 120 3e-27
Hs9506931 [A] KOG0346 RNA helicase 120 4e-27
Hs8922976 [A] KOG0330 ATP-dependent RNA helicase 120 5e-27
At3g16840 [A] KOG0347 RNA helicase 119 7e-27
Hs17505907 [A] KOG0348 ATP-dependent RNA helicase 119 1e-26
Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase... 117 3e-26
Hs20551983 [A] KOG0345 ATP-dependent RNA helicase 116 8e-26
CE26264 [A] KOG0335 ATP-dependent RNA helicase 116 8e-26
7295505 [A] KOG0346 RNA helicase 115 1e-25
At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicas... 115 2e-25
SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase 113 6e-25
Hs9966805 [A] KOG0347 RNA helicase 113 6e-25
Hs9506609 [A] KOG0340 ATP-dependent RNA helicase 113 6e-25
At2g40700 [A] KOG0348 ATP-dependent RNA helicase 112 1e-24
Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit 109 7e-24
YLR276c [A] KOG0346 RNA helicase 108 2e-23
CE27728 [A] KOG0346 RNA helicase 108 2e-23
7296165 [A] KOG0330 ATP-dependent RNA helicase 106 6e-23
SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune 105 2e-22
Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 104 2e-22
Hs20548790 [A] KOG0329 ATP-dependent RNA helicase 104 2e-22
7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 103 4e-22
SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 102 9e-22
At3g06980 [A] KOG0331 ATP-dependent RNA helicase 102 1e-21
YBR142w [A] KOG0347 RNA helicase 100 3e-21
At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 100 3e-21
ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase 100 4e-21
CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 99 1e-20
At4g09730 [A] KOG0331 ATP-dependent RNA helicase 99 1e-20
SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase 98 3e-20
At1g71280 [A] KOG0345 ATP-dependent RNA helicase 98 3e-20
7293348 [A] KOG0348 ATP-dependent RNA helicase 97 4e-20
CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1 91 3e-18
YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase 89 1e-17
7302399 [A] KOG0347 RNA helicase 89 1e-17
Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune 87 5e-17
CE27336 [A] KOG0334 RNA helicase 83 7e-16
7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase 81 3e-15
At5g19210 [J] KOG0327 Translation initiation factor 4F helicase ... 80 5e-15
7290730 [A] KOG0331 ATP-dependent RNA helicase 80 5e-15
CE29051 [A] KOG0335 ATP-dependent RNA helicase 80 8e-15
Hs18595975 [A] KOG0335 ATP-dependent RNA helicase 79 1e-14
Hs20336298 [A] KOG0348 ATP-dependent RNA helicase 77 5e-14
Hs20555745 [A] KOG0326 ATP-dependent RNA helicase 72 1e-12
YKR024c [A] KOG0348 ATP-dependent RNA helicase 67 7e-11
ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase 64 4e-10
YMR190c [L] KOG0351 ATP-dependent DNA helicase 60 5e-09
Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase... 59 1e-08
Hs17459025 [J] KOG0327 Translation initiation factor 4F helicase... 57 7e-08
Hs22045464 [A] KOG0343 RNA Helicase 56 9e-08
At1g27880 [L] KOG0351 ATP-dependent DNA helicase 56 9e-08
7295152 [L] KOG0351 ATP-dependent DNA helicase 55 3e-07
At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit 53 8e-07
ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase 53 1e-06
At3g05740 [L] KOG0351 ATP-dependent DNA helicase 53 1e-06
7299503 [L] KOG0351 ATP-dependent DNA helicase 52 2e-06
SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase 50 7e-06
>YDL084w [A] KOG0329 ATP-dependent RNA helicase
Length = 446
Score = 775 bits (2002), Expect = 0.0
Identities = 389/445 (87%), Positives = 410/445 (91%), Gaps = 9/445 (2%)
Query: 1 MSHEAEEDLLEYSDNEQEVQVD-NKATEVN--------AEGNGESQAKDSDKKGSYVGIH 51
MSHE EEDLLEYSDNEQE+Q+D +KA E EG+ + DKKGSYVGIH
Sbjct: 1 MSHEGEEDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIH 60
Query: 52 STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 111
STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST
Sbjct: 61 STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 120
Query: 112 LQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSK 171
LQQLDPV GEV+VVV+CNARELAYQIRNEYLRFSKYMPDVKTAVFYGGT D +LL
Sbjct: 121 LQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKN 180
Query: 172 KETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
K+T PHI+VATPGRLKALVR+K+IDLSHVKNFVIDECDKVLEELDMRRDVQ+IFRATPRD
Sbjct: 181 KDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRD 240
Query: 232 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQL 291
KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL E+EKNRKLAQL
Sbjct: 241 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL 300
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
LDDLEFNQVIIFVKST RANELTKLLNASNFPAITVHGHMKQEERIARYKAFK+FEKRIC
Sbjct: 301 LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRIC 360
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
VSTDVFGRGIDIERINLAINYD+ NEADQYLHRVGRAGRFGTKGLAIS +SS++DE+VLA
Sbjct: 361 VSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLA 420
Query: 412 KIQERFDVKITEFPEEGVDPSTYLN 436
KIQERFDVKI EFPEEG+DPSTYLN
Sbjct: 421 KIQERFDVKIAEFPEEGIDPSTYLN 445
>SPAC17G6.14c [A] KOG0329 ATP-dependent RNA helicase
Length = 434
Score = 614 bits (1584), Expect = e-176
Identities = 300/432 (69%), Positives = 358/432 (82%), Gaps = 2/432 (0%)
Query: 5 AEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPEL 64
A+EDL++Y + E+ VQ D A E+ + + SDKKGSYVGIHSTGF+DFLLKPEL
Sbjct: 4 AQEDLIDYEEEEELVQ-DQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKPEL 62
Query: 65 SRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSV 124
RAI D GFEHPSEVQQ IPQSI GTDVLCQAKSG+GKTAVFVLSTLQQ++PV GEVSV
Sbjct: 63 LRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSV 122
Query: 125 VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPG 184
+VLC+ RELA+QI+NEY RFSKY+PDV+TAVFYGG K D++ K PHI+VATPG
Sbjct: 123 LVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPG 182
Query: 185 RLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQE 244
RL ALVR+K + ++ VK+FV+DECDK+LE +DMRRD+Q++FRATP KQVMMFSATLS E
Sbjct: 183 RLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNE 242
Query: 245 IRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFV 304
IRPIC++F+QNPLEI+VDDE KLTLHGLQQ+Y+KL EK KNRK+ LLD LEFNQV+IFV
Sbjct: 243 IRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFV 302
Query: 305 KSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIE 364
KS RANEL +LL NFP+I +HG + QEERI RYKAFK+F+KRICV+TDVFGRGIDIE
Sbjct: 303 KSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIE 362
Query: 365 RINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEF 424
R+N+ INYDMP+ D YLHRVGRAGRFGTKGLAI+ SSE+D Q+L KIQERF+V ITE
Sbjct: 363 RVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITEL 422
Query: 425 PEEGVDPSTYLN 436
P+E +D +Y+N
Sbjct: 423 PDE-IDVGSYMN 433
>Hs4758112 [A] KOG0329 ATP-dependent RNA helicase
Length = 428
Score = 559 bits (1441), Expect = e-159
Identities = 271/433 (62%), Positives = 346/433 (79%), Gaps = 12/433 (2%)
Query: 3 HEAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKP 62
++ + +LL+Y D+E E A G+G D KGSYV IHS+GF+DFLLKP
Sbjct: 4 NDVDNELLDYEDDE---------VETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKP 54
Query: 63 ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEV 122
EL RAI+DCGFEHPSEVQ IPQ+I G DVLCQAKSG+GKTAVFVL+TLQQL+PV G+V
Sbjct: 55 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 114
Query: 123 SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVAT 182
SV+V+C+ RELA+QI EY RFSKYMP+VK AVF+GG K D ++L K+ PHI+V T
Sbjct: 115 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL--KKNCPHIVVGT 172
Query: 183 PGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
PGR+ AL R+K ++L H+K+F++DECDK+LE+LDMRRDVQ+IFR TP +KQVMMFSATLS
Sbjct: 173 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 232
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVII 302
+EIRP+CR+F+Q+P+EIFVDDE KLTLHGLQQYY+KL + EKNRKL LLD LEFNQV+I
Sbjct: 233 KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI 292
Query: 303 FVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGID 362
FVKS R L +LL NFPAI +H M QEER++RY+ FK+F++RI V+T++FGRG+D
Sbjct: 293 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 352
Query: 363 IERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKIT 422
IER+N+A NYDMP ++D YLHRV RAGRFGTKGLAI+ +S E+D ++L +Q+RF+V I+
Sbjct: 353 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 412
Query: 423 EFPEEGVDPSTYL 435
E P+E +D S+Y+
Sbjct: 413 ELPDE-IDISSYI 424
>Hs21040371 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 548 bits (1411), Expect = e-156
Identities = 267/432 (61%), Positives = 341/432 (78%), Gaps = 13/432 (3%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPE 63
+ E DLL+Y D E+E Q ++T + D KGSYV IHS+GF+DFLLKPE
Sbjct: 5 DVENDLLDY-DEEEEPQAPQESTPAPPK---------KDIKGSYVSIHSSGFRDFLLKPE 54
Query: 64 LSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS 123
L RAI+DCGFEHPSEVQ IPQ+I G DVLCQAKSG+GKTAVFVL+TLQQ++PV G+V+
Sbjct: 55 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT 114
Query: 124 VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATP 183
V+V+C+ RELA+QI EY RFSKYMP VK +VF+GG K D ++L K+ PH++V TP
Sbjct: 115 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL--KKNCPHVVVGTP 172
Query: 184 GRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQ 243
GR+ ALVR++ L +VK+FV+DECDK+LE+LDMRRDVQ+IFR TP +KQ MMFSATLS+
Sbjct: 173 GRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSK 232
Query: 244 EIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIF 303
+IRP+CR+F+Q+P+E+FVDDE KLTLHGLQQYY+KL + EKNRKL LLD LEFNQVIIF
Sbjct: 233 DIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIF 292
Query: 304 VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDI 363
VKS R L +LL NFPAI +H M QEER++RY+ FK+F++RI V+T++FGRG+DI
Sbjct: 293 VKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDI 352
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITE 423
ER+N+ NYDMP ++D YLHRV RAGRFGTKGLAI+ +S E+D ++L +Q+RF+V + E
Sbjct: 353 ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAE 412
Query: 424 FPEEGVDPSTYL 435
PEE +D STY+
Sbjct: 413 LPEE-IDISTYI 423
>At5g11200 [A] KOG0329 ATP-dependent RNA helicase
Length = 427
Score = 545 bits (1405), Expect = e-155
Identities = 275/429 (64%), Positives = 340/429 (79%), Gaps = 15/429 (3%)
Query: 6 EEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELS 65
EE+LL+Y E++ +V + +VN E + KKG YVGIHS+GF+DFLLKPEL
Sbjct: 11 EEELLDYE--EEDEKVPDSGNKVNGE---------AVKKG-YVGIHSSGFRDFLLKPELL 58
Query: 66 RAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVV 125
RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ++P G+VS +
Sbjct: 59 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSAL 118
Query: 126 VLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR 185
VLC+ RELAYQI NE++RFS Y+PD K +VFYGG K DLL K PHI+V TPGR
Sbjct: 119 VLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLL--KNECPHIVVGTPGR 176
Query: 186 LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
+ AL R+K + L +V++F++DECDK+LE LDMRRDVQ+IF+ TP DKQVMMFSATLS+EI
Sbjct: 177 VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236
Query: 246 RPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVK 305
RP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL+E EKNRKL LLD L+FNQV+IFVK
Sbjct: 237 RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVK 296
Query: 306 STVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIER 365
S RA EL KLL NFP+I +H M QEER+ RYK+FKE KRI V+TD+ GRGIDIER
Sbjct: 297 SVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIER 356
Query: 366 INLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFP 425
+N+ INYDMP+ AD YLHRVGRAGRFGTKGLAI+ ++S D +VL ++QERF+V I E P
Sbjct: 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELP 416
Query: 426 EEGVDPSTY 434
E+ +D STY
Sbjct: 417 EQ-IDTSTY 424
>At5g11170 [A] KOG0329 ATP-dependent RNA helicase
Length = 435
Score = 543 bits (1399), Expect = e-154
Identities = 274/429 (63%), Positives = 339/429 (78%), Gaps = 15/429 (3%)
Query: 6 EEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELS 65
EE+LL+Y E++ +V + +VN E + KKG YVGIHS+GF+DFLLKPEL
Sbjct: 11 EEELLDYE--EEDEKVPDSGNKVNGE---------AVKKG-YVGIHSSGFRDFLLKPELL 58
Query: 66 RAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVV 125
RAI+D GFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFVLSTLQQ++P G+VS +
Sbjct: 59 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSAL 118
Query: 126 VLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR 185
VLC+ RELAYQI NE++RFS Y+PD K +VFYGG K DLL K PHI+V TPGR
Sbjct: 119 VLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLL--KNECPHIVVGTPGR 176
Query: 186 LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
+ AL R+K + L +V++F++DECDK+LE LDMRRDVQ+IF+ TP DKQVMMFSATLS+EI
Sbjct: 177 VLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 236
Query: 246 RPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVK 305
RP+C++F+Q+P+EI+VDDEAKLTLHGL Q+YIKL+E EK RKL LLD L+FNQV+IFVK
Sbjct: 237 RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVK 296
Query: 306 STVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIER 365
S RA EL KLL NFP+I +H M QEER+ RYK+FKE KRI V+TD+ GRGIDIER
Sbjct: 297 SVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIER 356
Query: 366 INLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFP 425
+N+ INYDMP+ AD YLHRVGRAGRFGTKGLAI+ ++S D +VL ++QERF+V I E P
Sbjct: 357 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELP 416
Query: 426 EEGVDPSTY 434
E+ +D STY
Sbjct: 417 EQ-IDTSTY 424
>7296990 [A] KOG0329 ATP-dependent RNA helicase
Length = 424
Score = 535 bits (1379), Expect = e-152
Identities = 264/430 (61%), Positives = 339/430 (78%), Gaps = 14/430 (3%)
Query: 7 EDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSR 66
+DLL+Y D EQ TE A N E+ KD KG+YV IHS+GF+DFLLKPE+ R
Sbjct: 5 DDLLDYEDEEQ--------TETTAVENQEAPKKDV--KGTYVSIHSSGFRDFLLKPEILR 54
Query: 67 AIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS-VV 125
AI+DCGFEHPSEVQ IPQ++ G D+LCQAKSG+GKTAVFVL+TLQQL+P V+
Sbjct: 55 AIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVL 114
Query: 126 VLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR 185
V+C+ RELA+QI EY RFSKYMP VK AVF+GG + D + L K PHI+V TPGR
Sbjct: 115 VMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETL--KSGTPHIVVGTPGR 172
Query: 186 LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
+ AL+R+K ++L +K+FV+DECDK+LE+LDMRRDVQ+IFR+TP KQVMMFSATLS++I
Sbjct: 173 ILALIRNKKLNLKLLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDI 232
Query: 246 RPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVK 305
RP+C++F+Q+P+E++VDDEAKLTLHGLQQ+Y+ L E EKN+KL +LLD LEFNQV+IFVK
Sbjct: 233 RPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVK 292
Query: 306 STVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIER 365
S R L++LL NFPAI +H M QEER+ RY+ FK+F+KRI V+T++FGRG+DIER
Sbjct: 293 SVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIER 352
Query: 366 INLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFP 425
+N+ NYDMP ++D YLHRV RAGRFGTKGLAI+ +S E+D ++L ++Q+RFDV I+E P
Sbjct: 353 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELP 412
Query: 426 EEGVDPSTYL 435
EE +D STY+
Sbjct: 413 EE-IDLSTYI 421
>CE03025 [A] KOG0329 ATP-dependent RNA helicase
Length = 425
Score = 528 bits (1360), Expect = e-150
Identities = 259/430 (60%), Positives = 334/430 (77%), Gaps = 12/430 (2%)
Query: 6 EEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELS 65
EE LL+Y + ++E+Q +K EV G G+++ KG+Y IHS+GF+DFLLKPE+
Sbjct: 3 EEQLLDYEEEQEEIQ--DKQPEV---GGGDARKT----KGTYASIHSSGFRDFLLKPEIL 53
Query: 66 RAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVV 125
RAI DCGFEHPSEVQ IPQ+I G DV+CQAKSG+GKTAVFV++TLQQL+PV GEVSVV
Sbjct: 54 RAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVV 113
Query: 126 VLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR 185
+C+ RELA+QI EY RFSKY+P VK AVF+GG K D + L+ PHI+V TPGR
Sbjct: 114 CMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLAND--CPHIVVGTPGR 171
Query: 186 LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
+ AL R + L VK FV+DECDK++ + DMRRDVQ+I + TP+ KQVMMFSATL +E+
Sbjct: 172 MLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKEL 231
Query: 246 RPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVK 305
R +C+RF+Q+P+E++VDDEAKLTLHGLQQ+Y+KL E EKNR+L LLD LEFNQV+IFVK
Sbjct: 232 RTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVK 291
Query: 306 STVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIER 365
+ R L +LL NFP+I +H M QEER++RY+AFK+F+KRI V+TD+FGRG+DIER
Sbjct: 292 AVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIER 351
Query: 366 INLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFP 425
+N+ NYDMP ++D YLHRV RAGRFGTKGLAI+ +S E+D + L +Q+RFD+ ITE P
Sbjct: 352 VNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITELP 411
Query: 426 EEGVDPSTYL 435
E+ +D STY+
Sbjct: 412 EK-IDVSTYI 420
>Hs21040373 [A] KOG0329 ATP-dependent RNA helicase
Length = 316
Score = 313 bits (802), Expect = 3e-85
Identities = 154/252 (61%), Positives = 197/252 (78%), Gaps = 12/252 (4%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPE 63
+ E DLL+Y D E+E Q ++T + D KGSYV IHS+GF+DFLLKPE
Sbjct: 5 DVENDLLDY-DEEEEPQAPQESTPAPPK---------KDIKGSYVSIHSSGFRDFLLKPE 54
Query: 64 LSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS 123
L RAI+DCGFEHPSEVQ IPQ+I G DVLCQAKSG+GKTAVFVL+TLQQ++PV G+V+
Sbjct: 55 LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT 114
Query: 124 VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATP 183
V+V+C+ RELA+QI EY RFSKYMP VK +VF+GG K D ++L K+ PH++V TP
Sbjct: 115 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVL--KKNCPHVVVGTP 172
Query: 184 GRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQ 243
GR+ ALVR++ L +VK+FV+DECDK+LE+LDMRRDVQ+IFR TP +KQ MMFSATLS+
Sbjct: 173 GRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSK 232
Query: 244 EIRPICRRFLQN 255
+IRP+CR+F+Q+
Sbjct: 233 DIRPVCRKFMQD 244
>7297048 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 389
Score = 259 bits (663), Expect = 4e-69
Identities = 141/379 (37%), Positives = 225/379 (59%), Gaps = 12/379 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D L+ EL R I GFE PS +QQ I + G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 18 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 77
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+D E ++L RELA QI+ + +YM V + GGT + D +L E+
Sbjct: 78 IDTSIRECQALILAPTRELATQIQRVVMALGEYMK-VHSHACIGGTNVREDARIL---ES 133
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
H++V TPGR+ ++ K + ++K FV+DE D++L + +QD+F+ P D QV
Sbjct: 134 GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSR-GFKDQIQDVFKMLPPDVQV 192
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA---QL 291
++ SAT+ ++ + R F+++P+ I V E +LTL G++Q+Y+ N K++N KL L
Sbjct: 193 ILLSATMPPDVLEVSRCFMRDPVSILVKKE-ELTLEGIKQFYV--NVKQENWKLGTLCDL 249
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
D L Q +IF + + ++LT+ ++ NF +HG M+Q +R K F+ R+
Sbjct: 250 YDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVL 309
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
++TD+ RGID+++++L INYD+P+ + Y+HR+GR GRFG KG+AI+ I ++DD ++L
Sbjct: 310 ITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFI-TDDDRRILK 368
Query: 412 KIQERFDVKITEFPEEGVD 430
I++ + I E P D
Sbjct: 369 DIEQFYHTTIEEMPANIAD 387
>CE01341 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 402
Score = 252 bits (644), Expect = 7e-67
Identities = 137/377 (36%), Positives = 220/377 (58%), Gaps = 8/377 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D LK EL R I GFE PS +Q+ I G DV+ QA+SG GKTA F +S LQ+
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+D V +V+ RELA QI+ +Y+ +V GGT ++D K E
Sbjct: 91 IDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL-NVNILPCIGGTSVRDD---QRKLEA 146
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
H++V TPGR+ ++ +D S +K FV+DE D++L + + ++FR+ P+D QV
Sbjct: 147 GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSR-GFKDQIYEVFRSMPQDVQV 205
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
++ SAT+ E+ + RF++NP+ I V + +LTL G++Q+YI + + E K L L +
Sbjct: 206 VLLSATMPSEVLDVTNRFMRNPIRILVKKD-ELTLEGIRQFYINVQKDEWKFDCLCDLYN 264
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ Q +IF + + + LT+ + + F +HG M Q ER + F+ R+ ++
Sbjct: 265 VVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLIT 324
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RGID+++++L INYD+P+ + Y+HR+GR+GRFG KG+AI+ + +E+D + L +I
Sbjct: 325 TDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFV-TENDARQLKEI 383
Query: 414 QERFDVKITEFPEEGVD 430
+ + +I E PE D
Sbjct: 384 ESYYTTQIEEMPESIAD 400
>SPAC1F5.10 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 394
Score = 251 bits (640), Expect = 2e-66
Identities = 138/374 (36%), Positives = 222/374 (58%), Gaps = 8/374 (2%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
+ F++ LK +L R I G+E PS VQ I Q G DV+ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 113 QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
Q +D + ++L RELA QI+N L +M +V+ GGT NDI L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM-NVQCHACIGGTSVGNDIKKLDYG 139
Query: 173 ETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDK 232
+ H++ TPGR+ ++R +++ +VK ++DE D++L + + + DI+R P
Sbjct: 140 Q---HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ-GFKEQIYDIYRYLPPGT 195
Query: 233 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQL 291
QV++ SATL Q++ + +F NP+ I V + +LTL GL+QY+I + ++E K L L
Sbjct: 196 QVVVVSATLPQDVLEMTNKFTTNPVRILVKRD-ELTLEGLKQYFIAVEKEEWKFDTLCDL 254
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
D L Q +IF S + + LT+ + +NF ++HG M Q+ER A + F++ R+
Sbjct: 255 YDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVL 314
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
+ TD++ RGID+++++L INYD+P + Y+HR+GR+GRFG KG+AI+ +++E D ++L
Sbjct: 315 ICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNE-DVRILR 373
Query: 412 KIQERFDVKITEFP 425
I++ + I E P
Sbjct: 374 DIEQYYSTVIDEMP 387
>Hs4758140 [A] KOG0326 ATP-dependent RNA helicase
Length = 472
Score = 248 bits (633), Expect = 1e-65
Identities = 141/384 (36%), Positives = 225/384 (57%), Gaps = 14/384 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+D+ LK EL I + G+E PS +Q+ +IP ++ G D+L +AK+G GK+ +++ L++
Sbjct: 87 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 146
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
LD + + +V+ RELA Q+ ++ SK+M K GGT ++DI L +T
Sbjct: 147 LDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD--DT 204
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
V H+++ATPGR+ L++ + HV+ V+DE DK+L + D + ++DI P+++Q+
Sbjct: 205 V-HVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPKNRQI 262
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
+++SAT ++ LQ P EI + +E LTL G+ QYY + E++K L L
Sbjct: 263 LLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSR 320
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC--- 351
L+ NQ IIF S+ R L K ++ + +H M+QE R + F +F +C
Sbjct: 321 LQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHR---NRVFHDFRNGLCRNL 377
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
V TD+F RGIDI+ +N+ IN+D P A+ YLHR+GR+GRFG GLAI++I + DD L
Sbjct: 378 VCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLK 436
Query: 412 KIQERFDVKITEFPEEGVDPSTYL 435
I+E+ +I P +D S Y+
Sbjct: 437 SIEEQLGTEIKPIP-SNIDKSLYV 459
>7299019 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 248 bits (633), Expect = 1e-65
Identities = 141/377 (37%), Positives = 219/377 (57%), Gaps = 8/377 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F LK EL R I GFE PS +QQ +I + G DV+ QA+SG GKTA F +S LQ
Sbjct: 28 FNAMNLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQS 87
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
LD E V+ L RELA QI+ L M +V+ V GGT DI L +
Sbjct: 88 LDTTLRETQVLCLSPTRELAVQIQKVILALGDMM-NVQCHVCIGGTNLGEDIRKLDYGQ- 145
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
HI+ TPGR+ +++ + + +K V+DE D++L + + + D++R P QV
Sbjct: 146 --HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQV 202
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
++ SATL EI + +F+ +P+ I V + +LTL G++Q+++ + +E K L L D
Sbjct: 203 VLISATLPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYD 261
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
L Q +IF + + + LT+ + +NF ++HG M Q+ER K F+ + R+ ++
Sbjct: 262 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLIT 321
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TDV+ RGID+++++L INYD+PN + Y+HR+GR+GRFG KG+AI+ + S DD ++L I
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIRILRDI 380
Query: 414 QERFDVKITEFPEEGVD 430
++ + +I E P D
Sbjct: 381 EQYYSTQIDEMPMNVAD 397
>Hs4503531 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 407
Score = 248 bits (632), Expect = 2e-65
Identities = 137/377 (36%), Positives = 219/377 (57%), Gaps = 7/377 (1%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D LK L R I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
L+ E +VL RELA QI+ L YM A GGT +N++ L +
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAE-- 151
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
PHI+V TPGR+ ++ +++ +K FV+DE D++L + + +IF+ QV
Sbjct: 152 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQV 210
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
+ SAT+ ++ + ++F+++P+ I V E +LTL G++Q+YI + +E K L L +
Sbjct: 211 VFASATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYE 269
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
L Q +IF+ + + + LT+ ++A +F +HG M Q+ER + F+ R+ ++
Sbjct: 270 TLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLIT 329
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RGID+++++L INYD+P + Y+HR+GR GRFG KG+AI+ + +E+D+++L I
Sbjct: 330 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFV-TEEDKRILRDI 388
Query: 414 QERFDVKITEFPEEGVD 430
+ ++ + E P D
Sbjct: 389 ETFYNTTVEEMPMNVAD 405
>Hs4503529 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 406
Score = 248 bits (632), Expect = 2e-65
Identities = 134/372 (36%), Positives = 217/372 (58%), Gaps = 7/372 (1%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D L L R I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
++ +VL RELA QI+ + YM GGT + ++ L +
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQME-- 150
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
PHIIV TPGR+ ++ +++ ++K FV+DE D++L + + DIF+ + QV
Sbjct: 151 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQV 209
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
++ SAT+ ++ + ++F+++P+ I V E +LTL G++Q+YI + +E K L L +
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYE 268
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
L Q +IF+ + + + LT+ ++A +F +HG M Q+ER + F+ R+ ++
Sbjct: 269 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 328
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RGID+++++L INYD+P + Y+HR+GR GRFG KG+AI+M+ +E+D++ L I
Sbjct: 329 TDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV-TEEDKRTLRDI 387
Query: 414 QERFDVKITEFP 425
+ ++ I E P
Sbjct: 388 ETFYNTSIEEMP 399
>Hs7661920 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 411
Score = 245 bits (626), Expect = 8e-65
Identities = 136/372 (36%), Positives = 217/372 (57%), Gaps = 8/372 (2%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L+ +L R I GFE PS +QQ I Q I G DV+ Q++SG GKTA F +S LQ LD
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
E ++L RELA QI+ L YM +V+ GGT DI L + H++
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQ---HVV 160
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
TPGR+ ++R + + +K V+DE D++L + + + D++R P QV++ SA
Sbjct: 161 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISA 219
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLDDLEFN 298
TL EI + +F+ +P+ I V + +LTL G++Q+++ + +E K L L D L
Sbjct: 220 TLPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 278
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
Q +IF + + + LT+ + +NF ++HG M Q+ER + K F+ R+ +STDV+
Sbjct: 279 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 338
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
RG+D+ +++L INYD+PN + Y+HR+GR+GR+G KG+AI+ + + DD ++L I++ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYS 397
Query: 419 VKITEFPEEGVD 430
+I E P D
Sbjct: 398 TQIDEMPMNVAD 409
>YDR021w [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 243 bits (621), Expect = 3e-64
Identities = 134/376 (35%), Positives = 224/376 (58%), Gaps = 7/376 (1%)
Query: 52 STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 111
S+ F+ LK +L R I GFE PS +Q I Q I G DV+ QA+SG GKTA F +
Sbjct: 22 SSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGL 81
Query: 112 LQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSK 171
LQ +D + ++ ++L RELA QI YM +V GG K+D+ + K
Sbjct: 82 LQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYM-NVNAFAITGGKTLKDDLKKMQK 140
Query: 172 KETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEE-LDMRRDVQDIFRATPR 230
+ TPGR+ +++ + + +V+ V+DE D++L E L ++ + DIF P+
Sbjct: 141 HGC--QAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPK 198
Query: 231 DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLA 289
+ QV++ SAT++++I + R+F+ +P++I V + +++L G++QY + ++++E K L
Sbjct: 199 NCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD-EISLEGIKQYVVNVDKEEWKFDTLC 257
Query: 290 QLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKR 349
+ D L Q +IF + + + L++ L SNF +++HG MKQEER F+ R
Sbjct: 258 DIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317
Query: 350 ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
+ +STDV+ RGID+++++L INYD+P + Y+HR+GR+GRFG KG+AI+ I+ D +
Sbjct: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK- 376
Query: 410 LAKIQERFDVKITEFP 425
L +I++ + +KI P
Sbjct: 377 LREIEKFYSIKINPMP 392
>CE09901 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 399
Score = 243 bits (620), Expect = 4e-64
Identities = 133/367 (36%), Positives = 216/367 (58%), Gaps = 8/367 (2%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L+ +L R I GFE PS +QQ +P + DV+ QA+SG GKTA F +S LQ LD
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQV 92
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
E ++L RELA QI+ L YM +V+ GGT DI L + H++
Sbjct: 93 RETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLGEDIRKLDYGQ---HVV 148
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
TPGR+ ++R +++ +K V+DE D++L + + + DI+R P QV++ SA
Sbjct: 149 SGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSA 207
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLDDLEFN 298
TL EI + +F+ +P+ I V + +LTL G++Q+++ ++ +E K L L D L
Sbjct: 208 TLPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTIT 266
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
Q ++F + + + LT + +NF ++HG M+Q++R K F+ R+ +STDV+
Sbjct: 267 QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWA 326
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
RG+D+ +++L INYD+PN + Y+HR+GR+GRFG KG+AI+ + +DD ++L I++ +
Sbjct: 327 RGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV-KQDDVRILRDIEQYYS 385
Query: 419 VKITEFP 425
+I E P
Sbjct: 386 TQIDEMP 392
>YDL160c [A] KOG0326 ATP-dependent RNA helicase
Length = 506
Score = 241 bits (616), Expect = 1e-63
Identities = 146/381 (38%), Positives = 212/381 (55%), Gaps = 9/381 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+DF LK EL I + GFE PS +Q+ IP +I G D+L +AK+G GKTA FV+ TL++
Sbjct: 48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 107
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+ P ++ +++ RELA Q K+ + V GGT ++DI L ET
Sbjct: 108 VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDI--LRLNET 164
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
V HI+V TPGR+ L K DLS F++DE DK+L D + ++ I P Q
Sbjct: 165 V-HILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR-DFKTIIEQILSFLPPTHQS 222
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
++FSAT ++ + L P EI + +E LTL G+ QYY + E++K L L
Sbjct: 223 LLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSK 280
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
L+ NQ IIF ST R L K + + H MKQ+ER + F++ + R V +
Sbjct: 281 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS 340
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
D+ RGIDI+ +N+ IN+D P A+ YLHR+GR+GRFG GLAI++I + +D L KI+
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIE 399
Query: 415 ERFDVKITEFPEEGVDPSTYL 435
+ +I P +D S Y+
Sbjct: 400 QELGTEIAAIPAT-IDKSLYV 419
>7297629 [A] KOG0326 ATP-dependent RNA helicase
Length = 458
Score = 241 bits (615), Expect = 2e-63
Identities = 139/381 (36%), Positives = 220/381 (57%), Gaps = 9/381 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F++F LK EL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 59 FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 118
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+DP + + +V+ RELA Q + +K++ D++ V GGT K+DI + +K
Sbjct: 119 IDPTKDYIQALVMVPTRELALQTSQICIELAKHL-DIRVMVTTGGTILKDDILRIYQKV- 176
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
+I+ATPGR+ L+ K D+SH + V+DE DK+L LD + + + P+D Q+
Sbjct: 177 --QLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLS-LDFQGMLDHVILKLPKDPQI 233
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
++FSAT ++ + L+ P EI + +E LTL G+ QYY + E++K L L
Sbjct: 234 LLFSATFPLTVKNFMEKHLREPYEINLMEE--LTLKGVTQYYAFVQERQKVHCLNTLFSK 291
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
L+ NQ IIF ST R L K + + +H M Q R + F++ R V +
Sbjct: 292 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 351
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
D+F RGID++ +N+ IN+D P A+ YLHR+GR+GRFG G+AI++I+ ED L +I+
Sbjct: 352 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFD-LHRIE 410
Query: 415 ERFDVKITEFPEEGVDPSTYL 435
+ +I P+ +DP+ Y+
Sbjct: 411 KELGTEIKPIPKV-IDPALYV 430
>At1g72730 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 414
Score = 239 bits (610), Expect = 6e-63
Identities = 138/372 (37%), Positives = 213/372 (57%), Gaps = 8/372 (2%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L+P+L R I GFE PS +QQ I G DV+ QA+SG GKTA F LQQLD
Sbjct: 48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISL 107
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
+ +VL RELA QI Y+ VK GGT + D +L ++ H++
Sbjct: 108 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVL---QSGVHVV 163
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
V TPGR+ L+R + + +K FV+DE D++L + + DIF+ P QV +FSA
Sbjct: 164 VGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR-GFKDQIYDIFQLLPSKVQVGVFSA 222
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLDDLEFN 298
T+ E I R+F+ P+ I V + +LTL G++Q+Y+ ++++E K L L + L
Sbjct: 223 TMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 281
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
Q +IFV + + + LT + + + HG M Q R + F+ R+ ++TD+
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
RGID+++++L IN+D+P + + YLHR+GR+GRFG KG+AI+ ++SE DE+++A IQ ++
Sbjct: 342 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSE-DERMMADIQRFYN 400
Query: 419 VKITEFPEEGVD 430
V + E P D
Sbjct: 401 VVVEELPSNVAD 412
>SPAC1006.07 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 392
Score = 238 bits (607), Expect = 1e-62
Identities = 134/390 (34%), Positives = 228/390 (58%), Gaps = 9/390 (2%)
Query: 37 QAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQ 96
Q +DS + +Y + T F D LKPEL R I GFE PS +QQ I + DVL Q
Sbjct: 4 QLEDSVIETNYDEVIDT-FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQ 62
Query: 97 AKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVF 156
A+SG GKTA F +S LQ++D + ++L RELA QI+ + M +V+
Sbjct: 63 AQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLM-NVECHAC 121
Query: 157 YGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELD 216
GGT ++D+ L + H++V TPGR+ +++ + + V+ FV+DE D++L
Sbjct: 122 IGGTLVRDDMAAL---QAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR-G 177
Query: 217 MRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYY 276
+ + DIF+ P QV++ SAT+ Q++ + +F+++P+ I V + +LTL G++Q+Y
Sbjct: 178 FKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKD-ELTLEGIKQFY 236
Query: 277 IKLNEKE-KNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEE 335
+ + ++E K L L + + Q +IF + + + LT+ L +F ++HG M Q +
Sbjct: 237 VAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQ 296
Query: 336 RIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKG 395
R F+ RI ++TD+ RGID+++++L INYD+P + Y+HR+GR GRFG KG
Sbjct: 297 RDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKG 356
Query: 396 LAISMISSEDDEQVLAKIQERFDVKITEFP 425
++I+ +++ DD +++ +I++ ++ I E P
Sbjct: 357 VSINFVTN-DDVRMMREIEQFYNTHIEEMP 385
>SPBC776.09 [A] KOG0326 ATP-dependent RNA helicase
Length = 485
Score = 237 bits (604), Expect = 3e-62
Identities = 151/420 (35%), Positives = 227/420 (53%), Gaps = 10/420 (2%)
Query: 17 QEVQVDNKATEVNAEGNGESQAKDSDKKGSYVG-IHSTGFKDFLLKPELSRAIIDCGFEH 75
Q+++ N + +G ++Q D K V T F+D+ LK EL I + GFE
Sbjct: 7 QKLENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFER 66
Query: 76 PSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAY 135
PS +Q+ +IP ++ G D+L +AK+G GKTA FV+ +L+++D + ++ ++L RELA
Sbjct: 67 PSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELAL 126
Query: 136 QIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHI 195
Q K+M +VK V GGT ++DI L+ +TV HI+V TPGR+ L
Sbjct: 127 QTSQVCKTLGKHM-NVKVMVTTGGTTLRDDIIRLN--DTV-HIVVGTPGRVLDLAGKGVA 182
Query: 196 DLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQN 255
D S FV+DE DK+L + ++ + P+++Q+ ++SAT ++ + L
Sbjct: 183 DFSECTTFVMDEADKLLSP-EFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNK 241
Query: 256 PLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTK 315
P EI + DE LTL G+ QYY ++E +K L L L+ NQ IIF ST R L K
Sbjct: 242 PYEINLMDE--LTLRGVTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK 299
Query: 316 LLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMP 375
+ + H M Q R + F+ R V +D+ RGIDI+ +N+ IN+D P
Sbjct: 300 KITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP 359
Query: 376 NEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPSTYL 435
A+ YLHR+GR+GRFG +GLAIS IS D L +I+ +I P +DPS Y+
Sbjct: 360 KNAETYLHRIGRSGRFGHRGLAISFISWADRFN-LYRIENELGTEIQPIP-PSIDPSLYV 417
>At3g19760 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 408
Score = 236 bits (602), Expect = 5e-62
Identities = 128/379 (33%), Positives = 216/379 (56%), Gaps = 8/379 (2%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
T F D +K ++ R + + GFE PS +QQ + + G DV+ QA+SG GKT++ LS
Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC 94
Query: 113 QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
Q +D EV ++L RELA Q + +++ GG DI K
Sbjct: 95 QVVDTSSREVQALILSPTRELATQTEKTIQAIGLHA-NIQAHACIGGNSVGEDI---RKL 150
Query: 173 ETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDK 232
E H++ TPGR+ +++ + + +K ++DE D++L + + D++R P D
Sbjct: 151 EHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSR-GFKDQIYDVYRYLPPDL 209
Query: 233 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQL 291
QV + SATL EI + +F+ P++I V + +LTL G++Q+++ + ++E K L L
Sbjct: 210 QVCLVSATLPHEILEMTSKFMTEPVKILVKRD-ELTLEGIKQFFVAVEKEEWKFDTLCDL 268
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
D L Q +IF + + + L++ + + NF ++HG M Q+ER A F+ + R+
Sbjct: 269 YDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVL 328
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
++TDV+ RGID+++++L INYD+PN + Y+HR+GR+GRFG KG+AI+ + S DD ++L
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIKILR 387
Query: 412 KIQERFDVKITEFPEEGVD 430
I++ + +I E P D
Sbjct: 388 DIEQYYSTQIDEMPMNVAD 406
>At3g13920 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 234 bits (597), Expect = 2e-61
Identities = 146/412 (35%), Positives = 223/412 (53%), Gaps = 17/412 (4%)
Query: 20 QVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEV 79
Q D K EV EG E SY +H + F L+ L R I GFE PS +
Sbjct: 15 QFDQKLNEV-LEGQDEFFT-------SYDDVHES-FDAMGLQENLLRGIYAYGFEKPSAI 65
Query: 80 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRN 139
QQ I G DV+ QA+SG GKTA F LQQLD + +VL RELA QI
Sbjct: 66 QQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEK 125
Query: 140 EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSH 199
Y+ VK GGT + D +L + H++V TPGR+ +++ + + +
Sbjct: 126 VMRALGDYL-GVKVHACVGGTSVREDQRIL---QAGVHVVVGTPGRVFDMLKRQSLRADN 181
Query: 200 VKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEI 259
+K FV+DE D++L + + DIF+ P QV +FSAT+ E I R+F+ P+ I
Sbjct: 182 IKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
Query: 260 FVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN 318
V + +LTL G++Q+Y+ + ++E K L L + L Q +IFV + + + LT +
Sbjct: 241 LVKRD-ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 299
Query: 319 ASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEA 378
+ + HG M Q R + F+ R+ ++TD+ RGID+++++L IN+D+P +
Sbjct: 300 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQP 359
Query: 379 DQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVD 430
+ YLHR+GR+GRFG KG+AI+ + + DDE++L IQ+ ++V + E P D
Sbjct: 360 ENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVVEELPSNVAD 410
>YKR059w [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 234 bits (596), Expect = 2e-61
Identities = 131/383 (34%), Positives = 211/383 (54%), Gaps = 12/383 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D L L R + GFE PS +QQ I I G DVL QA+SG GKT F ++ LQ+
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+D ++L RELA QI+ + + +M D+K GGT + D + L +
Sbjct: 84 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQ- 141
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
I+V TPGR+ ++ + +K F++DE D++L + + IF P QV
Sbjct: 142 ---IVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQV 197
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
++ SAT+ ++ + +F++NP+ I V + +LTL G++Q+Y+ + E+E K L L D
Sbjct: 198 VLLSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEGIKQFYVNVEEEEYKYECLTDLYD 256
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ Q +IF + + ELT L F ++ + Q+ER K F+ RI +S
Sbjct: 257 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 316
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RGID+++++L INYD+P + Y+HR+GR GRFG KG+AI+ +++E D + ++
Sbjct: 317 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMREL 375
Query: 414 QERFDVKITEFPEEGVDPSTYLN 436
++ + +I E P D +T LN
Sbjct: 376 EKFYSTQIEELPS---DIATLLN 395
>YJL138c [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 395
Score = 234 bits (596), Expect = 2e-61
Identities = 131/383 (34%), Positives = 211/383 (54%), Gaps = 12/383 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D L L R + GFE PS +QQ I I G DVL QA+SG GKT F ++ LQ+
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+D ++L RELA QI+ + + +M D+K GGT + D + L +
Sbjct: 84 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQ- 141
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
I+V TPGR+ ++ + +K F++DE D++L + + IF P QV
Sbjct: 142 ---IVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQV 197
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
++ SAT+ ++ + +F++NP+ I V + +LTL G++Q+Y+ + E+E K L L D
Sbjct: 198 VLLSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEGIKQFYVNVEEEEYKYECLTDLYD 256
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ Q +IF + + ELT L F ++ + Q+ER K F+ RI +S
Sbjct: 257 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 316
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RGID+++++L INYD+P + Y+HR+GR GRFG KG+AI+ +++E D + ++
Sbjct: 317 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMREL 375
Query: 414 QERFDVKITEFPEEGVDPSTYLN 436
++ + +I E P D +T LN
Sbjct: 376 EKFYSTQIEELPS---DIATLLN 395
>At1g51380 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 392
Score = 233 bits (594), Expect = 4e-61
Identities = 130/374 (34%), Positives = 216/374 (56%), Gaps = 8/374 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D + ++ R + D G++ PSE+QQ + + G DV+ QA+SG GKT++ +S Q
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
++ +V V+VL +RELA Q + +++ GG DI K E
Sbjct: 84 VNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT-NIQAHACIGGKSIGEDI---KKLER 139
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
H + TPGR+ +++ + VK V+DE D++L + ++ + D++RA P D QV
Sbjct: 140 GVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSK-GLKDQIYDVYRALPHDIQV 198
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
+ SATL QEI + +F+ +P+ I V + +LTL G++QYY+ ++++E K L L
Sbjct: 199 CLISATLPQEILEMTEKFMTDPVRILVKPD-ELTLEGIKQYYVDVDKEEWKFDTLCDLYG 257
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
L NQ IIF + + + LT+ + +SNF ++HG +Q+ER F+ F+ R+ ++
Sbjct: 258 RLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIA 317
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
+DV+ RGID++ ++ INYD+PN + Y+HR+GRAGRFG +G+AI+ + S D + L I
Sbjct: 318 SDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKD-LKDI 376
Query: 414 QERFDVKITEFPEE 427
+ + KI E P +
Sbjct: 377 ERHYGTKIREMPAD 390
>At2g45810 [A] KOG0326 ATP-dependent RNA helicase
Length = 528
Score = 232 bits (591), Expect = 9e-61
Identities = 131/361 (36%), Positives = 205/361 (56%), Gaps = 7/361 (1%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+D+ LK +L R I + GFE PS +Q+ +IP ++ G+D+L +AK+G GKT F + TL++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+DP + V+L RELA Q SKY+ ++ V GGT ++DI L +
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLRDDIMRLYQPV- 273
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
H++V TPGR+ L + L V+DE DK+L ++ + ++++ + P +Q+
Sbjct: 274 --HLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLS-VEFQPSIEELIQFLPESRQI 330
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
+MFSAT ++ R+L+ P I + D+ LTL G+ QYY + E++K L L
Sbjct: 331 LMFSATFPVTVKSFKDRYLKKPYIINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSK 388
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
L+ NQ IIF S R L K + + +H M Q+ R + F+ R V T
Sbjct: 389 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCT 448
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
D+F RGIDI+ +N+ IN+D P ++ YLHRVGR+GRFG GLA+++++ ED ++ Q
Sbjct: 449 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 508
Query: 415 E 415
E
Sbjct: 509 E 509
>At1g54270 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 412
Score = 229 bits (584), Expect = 6e-60
Identities = 137/386 (35%), Positives = 213/386 (54%), Gaps = 9/386 (2%)
Query: 46 SYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTA 105
SY +H + F L+ L R I GFE PS +QQ I G DV+ QA+SG GKTA
Sbjct: 33 SYDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 106 VFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
F LQQLD + +VL RELA QI Y VK GGT + D
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ-GVKVHACVGGTSVRED 150
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIF 225
+L + H++V TPGR+ ++R + + +K FV+DE D++L + + DIF
Sbjct: 151 QRIL---QAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR-GFKDQIYDIF 206
Query: 226 RATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-K 284
+ P QV +FSAT+ E I R+F+ P+ I V + +LTL G++Q+Y+ + +++ K
Sbjct: 207 QLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEGIKQFYVNVEKEDWK 265
Query: 285 NRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFK 344
L L + L Q +IFV + + + LT + + + HG M Q R + F+
Sbjct: 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325
Query: 345 EFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSE 404
R+ ++TD+ RGID+++++L IN+D+P + + YLHR+GR+GRFG KG+AI+ ++
Sbjct: 326 SGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTL- 384
Query: 405 DDEQVLAKIQERFDVKITEFPEEGVD 430
DD+++L IQ+ ++V + E P D
Sbjct: 385 DDQRMLFDIQKFYNVVVEELPSNVAD 410
>CE00839 [A] KOG0326 ATP-dependent RNA helicase
Length = 430
Score = 228 bits (581), Expect = 1e-59
Identities = 131/381 (34%), Positives = 212/381 (55%), Gaps = 9/381 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+DF L +L I + G+E PS +Q+ +I ++ G D+L +AK+G GKT + + +++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+ P + +V+ RELA Q + SK++ +K V GGT+ ++DI L+
Sbjct: 105 IQPALKAIQAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDLRDDIMRLNG--- 160
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
H+++ATPGR+ L+ + H K V+DE DK+L + D + + + P+++QV
Sbjct: 161 TVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQ-DFQGILDRLINFLPKERQV 219
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
M++SAT + ++ + P EI + +E LTL G+ QYY + EK+K L L
Sbjct: 220 MLYSATFPNTVTSFMQKHMHKPYEINLMEE--LTLLGVTQYYAFVQEKQKVHCLNTLFRK 277
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
L+ NQ IIF ST R L K + + +H M Q R + F++ R V +
Sbjct: 278 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCS 337
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
D+ RGIDI+ +N+ IN+D P A+ YLHR+GR+GRFG G+AI++I+ E D L +I+
Sbjct: 338 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYE-DRHTLRRIE 396
Query: 415 ERFDVKITEFPEEGVDPSTYL 435
+ +I P+ VDP Y+
Sbjct: 397 QELRTRIEPIPKT-VDPKLYV 416
>At3g61240 [A] KOG0326 ATP-dependent RNA helicase
Length = 498
Score = 227 bits (578), Expect = 3e-59
Identities = 136/411 (33%), Positives = 221/411 (53%), Gaps = 15/411 (3%)
Query: 13 SDNEQEVQVDNKATEVNAEGNGES-----QAKDSDKKGSYVGIHSTG---FKDFLLKPEL 64
+ N EV E +++ NG+ + D + + +T F+D+ LK +L
Sbjct: 76 ASNANEVVQQTTQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRDL 135
Query: 65 SRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSV 124
+ I + GFE PS +Q+ +IP ++ G+D+L +AK+G GKT F + L+++DP +
Sbjct: 136 LKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQA 195
Query: 125 VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPG 184
++L RELA Q SKY+ +++ V GGT ++DI L + H++V TPG
Sbjct: 196 MILVPTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLRDDIMRLHQPV---HLLVGTPG 251
Query: 185 RLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQE 244
R+ L + L V+DE DK+L + + ++++ + P+++Q +MFSAT
Sbjct: 252 RILDLTKKGVCVLKDCAMLVMDEADKLLSA-EFQPSLEELIQFLPQNRQFLMFSATFPVT 310
Query: 245 IRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFV 304
++ R L+ P I + D+ LTL G+ QYY + E++K L L L+ NQ IIF
Sbjct: 311 VKAFKDRHLRKPYVINLMDQ--LTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFC 368
Query: 305 KSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIE 364
S R L K + + +H M Q+ R + F+ R V TD+F RGIDI+
Sbjct: 369 NSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQ 428
Query: 365 RINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQE 415
+N+ IN+D P ++ YLHRVGR+GRFG GLA+++++ ED ++ QE
Sbjct: 429 AVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQE 479
>Hs14251212 [K] KOG4284 DEAD box protein
Length = 824
Score = 220 bits (560), Expect = 4e-57
Identities = 123/380 (32%), Positives = 202/380 (52%), Gaps = 13/380 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+ LL + + GFE PS VQ IP G D++ QAKSG GKT VF L
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
L +++L RE+A QI + M ++ VF GGT D L K
Sbjct: 124 LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC-- 181
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
HI V +PGR+K L+ +++ ++ F++DE DK+LEE + + I+ + P KQ+
Sbjct: 182 --HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQM 239
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE--------KEKNR 286
+ SAT + + +++++P + ++ +L GL+QYY +N +EK +
Sbjct: 240 LAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIGLKQYYKVVNSYPLAHKVFEEKTQ 298
Query: 287 KLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEF 346
L +L + FNQ ++F RA L +L++ FPA + G+M Q +R+ K F
Sbjct: 299 HLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHF 358
Query: 347 EKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDD 406
R+ +STD+ RGID E++NL +N D+P + + Y+HR+GRAGRFGT GL ++ ++
Sbjct: 359 HCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEE 418
Query: 407 EQVLAKIQERFDVKITEFPE 426
E ++ +I ++ ++ + P+
Sbjct: 419 ENMMMRIAQKCNINLLPLPD 438
>At4g00660 [A] KOG0326 ATP-dependent RNA helicase
Length = 499
Score = 214 bits (546), Expect = 2e-55
Identities = 135/384 (35%), Positives = 210/384 (54%), Gaps = 23/384 (5%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+D+ LK EL I + GFE PS +Q+ +IP ++ G D+L +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 115 LDP----VQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
+D +QG VL + ++ ++ ++L+ ++ V GGT K+DI L
Sbjct: 193 IDQDNNVIQGNC---VLDHTSQVCKEL-GKHLK-------IQVMVTTGGTSLKDDIMRLY 241
Query: 171 KKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPR 230
+ H++V TPGR+ L + L V+DE DK+L + + + V+ + P
Sbjct: 242 QPV---HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQ-EFQPSVEHLISFLPE 297
Query: 231 DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQ 290
+Q++MFSAT ++ RFL NP I + DE LTL G+ Q+Y + E++K L
Sbjct: 298 SRQILMFSATFPVTVKDFKDRFLTNPYVINLMDE--LTLKGITQFYAFVEERQKIHCLNT 355
Query: 291 LLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRI 350
L L+ NQ IIF S R L K + + +H M Q+ R + F+ R
Sbjct: 356 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRN 415
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVL 410
V TD+F RGIDI+ +N+ IN+D P A+ YLHRVGR+GRFG GLA+++I+ ED L
Sbjct: 416 LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFN-L 474
Query: 411 AKIQERFDVKITEFPEEGVDPSTY 434
+I++ +I + P +D + Y
Sbjct: 475 YRIEQELGTEIKQIPPH-IDQAIY 497
>7294824 [K] KOG4284 DEAD box protein
Length = 1028
Score = 211 bits (536), Expect = 2e-54
Identities = 117/383 (30%), Positives = 206/383 (53%), Gaps = 15/383 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F++ L L + F P+++Q IP ++ D++ Q+KSG GKT ++V++ +Q
Sbjct: 27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQS 86
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+P + +++ RELA Q+++ + K D K + F GGT+ D K+
Sbjct: 87 FNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKD----RKRMN 142
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
+I+ TPGRL L ++ D+S ++ V+DE D++ + ++ V + A P+++Q+
Sbjct: 143 ESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQI 202
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE--------KNR 286
+ SAT Q + + + P+ I + A + L G++Q+ +L ++ K +
Sbjct: 203 IACSATYDQNLDERLAKVMDKPMLISNSERATVLL-GIRQFVYELPQQNNSVEEMRLKLQ 261
Query: 287 KLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEF 346
L Q+ + L + Q IIF S +RA+ L AS + G M+Q ER+ ++ ++ F
Sbjct: 262 ILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNF 321
Query: 347 EKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDD 406
RI V+TD+ RG+D NL IN D P + YLHR+GRAGRFG+KG+AI+ I+S+ +
Sbjct: 322 TMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKE 381
Query: 407 EQVLAKIQERFDV--KITEFPEE 427
Q ++ ++ + EFP+E
Sbjct: 382 SQRFREMSKKIATAWSVLEFPKE 404
>Hs20149629 [A] KOG0330 ATP-dependent RNA helicase
Length = 455
Score = 210 bits (534), Expect = 4e-54
Identities = 126/374 (33%), Positives = 203/374 (53%), Gaps = 8/374 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
FKD + L A G+ P+++Q IP ++ G D++ A++G GKT F L L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
L + +VL RELA+QI ++ + V++AV GG + + L+KK
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-- 142
Query: 175 VPHIIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQ 233
PHII+ATPGRL L K +L +K V+DE D++L +D +V I + PRD++
Sbjct: 143 -PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN-MDFETEVDKILKVIPRDRK 200
Query: 234 VMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLD 293
+FSAT++++++ + R L+NP++ V + + T+ LQQYYI + K K+ L +L+
Sbjct: 201 TFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYIFIPSKFKDTYLVYILN 259
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+L N +IF + LL F AI +HG M Q +R+ FK + I ++
Sbjct: 260 ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLA 319
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TDV RG+DI +++ +N+D+P + Y+HRVGR R G G AI+ ++ D E + +I
Sbjct: 320 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVE-LFQRI 378
Query: 414 QERFDVKITEFPEE 427
+ K+ FP +
Sbjct: 379 EHLIGKKLPGFPTQ 392
>SPAC823.08c [A] KOG0330 ATP-dependent RNA helicase
Length = 465
Score = 208 bits (530), Expect = 1e-53
Identities = 138/432 (31%), Positives = 226/432 (51%), Gaps = 24/432 (5%)
Query: 5 AEEDLLEYSDNE---QEVQVDNKATEVNAEGN-GESQAKDSDKKGSYVGIHSTGFKDFLL 60
+E+ L E N ++++ N ++E ++E N G+SQ ++ K FK+ +
Sbjct: 4 SEKKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKT----------FKELGV 53
Query: 61 KPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQG 120
EL A GF+ P+ +QQ IP ++ DV+ A++G GKTA F L +Q+L
Sbjct: 54 IDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPS 113
Query: 121 EVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIV 180
VVL RELAYQI ++ + V++ V GG + LSKK PH++V
Sbjct: 114 PFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDMVTQAVALSKK---PHVLV 169
Query: 181 ATPGRLKA-LVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
TPGRL L K L ++K ++DE D++L+ +D + I + P +++ ++FSA
Sbjct: 170 CTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHERRTLLFSA 228
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQ 299
T++ ++ + R L P+ + V + T+ L Q Y+ K K+ L L+++L N
Sbjct: 229 TMTSKVEKLQRASLHQPVRVAVSSKFS-TVDTLIQRYLFFPFKHKDTYLVYLVNELAGNS 287
Query: 300 VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGR 359
+IIF ++ L LL F AI +HG + Q R+ FK + V+TDV R
Sbjct: 288 IIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAAR 347
Query: 360 GIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDV 419
G+DI +++ INYD+P ++ Y+HRVGR R G G +I++++ D E L +I+
Sbjct: 348 GLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFL-RIEATIGK 406
Query: 420 KITEF--PEEGV 429
K+ E+ +EGV
Sbjct: 407 KMQEYEIDKEGV 418
>7298752 [A] KOG0330 ATP-dependent RNA helicase
Length = 507
Score = 207 bits (527), Expect = 2e-53
Identities = 132/411 (32%), Positives = 221/411 (53%), Gaps = 13/411 (3%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVN---AEGNGESQAKDSDKKGSYVGI---HSTGFKD 57
E E+ L+ SD E+++ + + + + EG+ E+ D KGS +KD
Sbjct: 6 EDEQTQLQTSDEEEDLGSEEEQEDEDNNHKEGDSEAALSGEDDKGSEDDAAEEQKLTWKD 65
Query: 58 FLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP 117
L L +A + ++ PS++Q+ IP ++ G DV+ A++G GKT F L L L
Sbjct: 66 LGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLE 125
Query: 118 VQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH 177
+VL RELA+QI ++ + +K V GG + L+KK PH
Sbjct: 126 NPQRYFALVLTPTRELAFQIGEQFEALGSGI-GIKCCVVVGGMDMVAQGLQLAKK---PH 181
Query: 178 IIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMM 236
II+ATPGRL L K +L +K V+DE D++L +D ++ I + PR+++ +
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILN-MDFEVELDKILKVLPRERRTFL 240
Query: 237 FSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLE 296
FSAT++++++ + R L++P+++ V ++ + T+ LQQ Y+ + K K+ L +L++L
Sbjct: 241 FSATMTKKVKKLQRASLKDPVKVEVSNKYQ-TVEQLQQSYLFIPVKYKDVYLVHILNELA 299
Query: 297 FNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDV 356
N +IF + + +L A AI +HG M Q +R+A FK + I +STDV
Sbjct: 300 GNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDV 359
Query: 357 FGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDE 407
RG+DI +++ +N+D+P + Y+HRVGR R G G AI+++S D E
Sbjct: 360 ASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIE 410
>CE00337 [A] KOG0330 ATP-dependent RNA helicase
Length = 489
Score = 201 bits (510), Expect = 2e-51
Identities = 128/419 (30%), Positives = 211/419 (49%), Gaps = 20/419 (4%)
Query: 7 EDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSR 66
ED ++ N ++ K E + E K+ F + + L
Sbjct: 10 EDNQKFLGNRKKNLTKKKVVTEEIEKDDEEDVKEKS------------FAELGVSQPLCD 57
Query: 67 AIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVV 126
A G+ PS++QQ +P ++ G DV+ A++G GKT F + LQ L +V
Sbjct: 58 ACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLV 117
Query: 127 LCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
L RELA+QI ++ + + AV GG + L+++ PHIIVATPGRL
Sbjct: 118 LTPTRELAFQIGQQFEALGSGIGLI-AAVIVGGVDMAAQAMALARR---PHIIVATPGRL 173
Query: 187 -KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
L K +L +K ++DE D++L +D ++ I + PR+++ +FSAT+++++
Sbjct: 174 VDHLENTKGFNLKALKFLIMDEADRILN-MDFEVELDKILKVIPRERRTYLFSATMTKKV 232
Query: 246 RPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVK 305
+ R L++P + V K T+ L+Q+YI + K K L LL++ N I+F
Sbjct: 233 SKLERASLRDPARVSVSSRYK-TVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCA 291
Query: 306 STVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIER 365
+ ++ +L A+ +HG M QE+R+ FK + I V TDV RG+DI
Sbjct: 292 TCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPH 351
Query: 366 INLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEF 424
+++ INYDMP+++ Y+HRVGR R G G+AI++++ D E KI+ K+ E+
Sbjct: 352 VDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVE-AYQKIEANLGKKLDEY 409
>ECU09g1640 [A] KOG0326 ATP-dependent RNA helicase
Length = 489
Score = 196 bits (499), Expect = 4e-50
Identities = 125/376 (33%), Positives = 203/376 (53%), Gaps = 8/376 (2%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
G++ L P L + I D G++ PS VQ +IP + G ++L ++K+G GKTA +++ L
Sbjct: 109 GWESLGLGPVLLKRIRDIGYDFPSPVQVASIPHVLGGKNLLVRSKNGTGKTASYIVPMLN 168
Query: 114 QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKE 173
++ + + ++L RELA QI R S+ V +A GGT ++DI +S
Sbjct: 169 MINSSELSIQGIILVPIRELALQISRNVKRMSEGT-GVISAPVVGGTSMQDDIIRVSNGV 227
Query: 174 TVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQ 233
H++V TPGR+ LV + LS V DE DK+L+ + V + PR+KQ
Sbjct: 228 ---HVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLLD-VTFGETVTKLLDLLPREKQ 283
Query: 234 VMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLD 293
++++SAT + RR+++NPL I + E L G++Q+Y + EK L LL
Sbjct: 284 MLLYSATFPYFVTGFIRRYMKNPLCINLMKE--LAPVGVKQFYTYVKPSEKLLCLKSLLL 341
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
L NQ +IF S L + P+ +H M QE+R + F + + +I V+
Sbjct: 342 RLSINQCVIFCNSIKTVELLAMKITEMGLPSYFIHSKMAQEDRNIVFHNFLKGKCKILVA 401
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RG+D N IN+D+ + YLHR+GRAGRFG G+AIS++++E+ E +L I
Sbjct: 402 TDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTEEKE-MLMDI 460
Query: 414 QERFDVKITEFPEEGV 429
+ + +I+ ++G+
Sbjct: 461 EAKLGKEISPLSDKGL 476
>SPBC12C2.06 [A] KOG0332 ATP-dependent RNA helicase
Length = 503
Score = 194 bits (493), Expect = 2e-49
Identities = 133/432 (30%), Positives = 226/432 (51%), Gaps = 25/432 (5%)
Query: 5 AEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPEL 64
AE+ + S+N++ + NK EV + + QA D + S F++ LKPEL
Sbjct: 73 AEDANTKQSENDESNLIPNK-NEVRVK-LADLQA---DPNSPLFSVKS--FEELELKPEL 125
Query: 65 SRAIIDCGFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTLQQLDPVQGEV 122
+ I F+ PS++Q+ +P + +++ Q++SG GKTA F L+ L ++D +
Sbjct: 126 LKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP 185
Query: 123 SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVAT 182
+ L +RELA QI + KY +VKTA +G K+ + +K + I++ T
Sbjct: 186 QAICLAPSRELARQIMDVVTEMGKYT-EVKTA--FG---IKDSVPKGAKIDA--QIVIGT 237
Query: 183 PGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
PG + L++ + +D +K FV+DE D +L++ + I PR+ Q+++FSAT S
Sbjct: 238 PGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS 297
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL-NEKEKNRKLAQLLDDLEFNQVI 301
+ + RF N EI + E +L++ G++Q Y+ +E+ K L +L L Q I
Sbjct: 298 ERVEKYAERFAPNANEIRLKTE-ELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSI 356
Query: 302 IFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGI 361
IF K A E+ + + A + G+++ +R A +F+ ++ V+T+V RGI
Sbjct: 357 IFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 416
Query: 362 DIERINLAINYDMP------NEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQE 415
D+ ++NL +NYDMP + YLHR+GR GRFG G++I+ + + + + IQE
Sbjct: 417 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 476
Query: 416 RFDVKITEFPEE 427
F IT P +
Sbjct: 477 YFQRPITRVPTD 488
>ECU10g0440 [A] KOG0330 ATP-dependent RNA helicase
Length = 400
Score = 194 bits (492), Expect = 3e-49
Identities = 118/371 (31%), Positives = 196/371 (52%), Gaps = 9/371 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D + L + + G P+EVQ+ IP + G DV+ +++G GKT FVL +
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
L +V+ REL+ QI + F ++ + GG + + LSK+
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECFNMFQA--TGLRVCLLVGGANFNVQANQLSKR-- 118
Query: 175 VPHIIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQ 233
PH++V TPGR+ + +++ K V+ FV+DE D+ E+ D D++ I + +Q
Sbjct: 119 -PHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQ-DFVEDLETIIPSLREKRQ 176
Query: 234 VMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLD 293
++F+AT+S EI + L+ P I ++ + T+ L++YY+ + K KN L +LL+
Sbjct: 177 TLLFTATMSDEISKLSSSILKRPKTIRTAEKYE-TVPALKEYYLFVAMKWKNSALVELLE 235
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ VI+FV V A ++ L F + +HG + QE+R ++FKE + V
Sbjct: 236 MSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVC 295
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TD+ RG+DI ++L IN+D+P Y+HRVGR R G G AI++++ D EQ+ KI
Sbjct: 296 TDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQI-QKI 354
Query: 414 QERFDVKITEF 424
+ + K+ EF
Sbjct: 355 EFTLEKKLEEF 365
>YHR065c [A] KOG0330 ATP-dependent RNA helicase
Length = 543
Score = 192 bits (488), Expect = 8e-49
Identities = 134/435 (30%), Positives = 226/435 (51%), Gaps = 18/435 (4%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKAT-EVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKP 62
EAE++ SD+E++ + K + ++ +Q +++++ S+ F + L P
Sbjct: 78 EAEKEGGSESDSEEDATAEKKKVLKSKSKSTVSTQNENTNEDESF-----ESFSELNLVP 132
Query: 63 ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEV 122
EL +A + + P+ +Q IP ++ G D++ A++G GKTA F + L +L Q
Sbjct: 133 ELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPY 192
Query: 123 SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVAT 182
+L RELA QI+ + M T + G DL+ K PHII+AT
Sbjct: 193 YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRK----PHIIIAT 248
Query: 183 PGRLKA-LVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP-RDKQVMMFSAT 240
PGRL L K L +K V+DE D++L+ ++ + I + P +++ +FSAT
Sbjct: 249 PGRLMDHLENTKGFSLRKLKFLVMDEADRLLD-MEFGPVLDRILKIIPTQERTTYLFSAT 307
Query: 241 LSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQV 300
++ +I + R L NP++ V ++ + T+ L Q + + KN L LL++ +
Sbjct: 308 MTSKIDKLQRASLTNPVKCAVSNKYQ-TVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTM 366
Query: 301 IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRG 360
IIF ++ A L+ L N F A +HG + Q +R+ FK ++ I V+TDV RG
Sbjct: 367 IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARG 426
Query: 361 IDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVK 420
+DI +++ +NYD+P ++ Y+HRVGR R G G +IS++S D E +L +I+E K
Sbjct: 427 LDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELIL-RIEEVLGKK 485
Query: 421 ITEFPEEGVDPSTYL 435
+ P+E VD + L
Sbjct: 486 L---PKESVDKNIIL 497
>SPAC30D11.03 [A] KOG0338 ATP-dependent RNA helicase
Length = 754
Score = 191 bits (486), Expect = 1e-48
Identities = 129/445 (28%), Positives = 236/445 (52%), Gaps = 25/445 (5%)
Query: 4 EAEEDLLE-----YSDNEQEVQVDNKATEVNAEGNGESQAK------DSDKKGSYVGIHS 52
E E+D+ E + + Q+ D+ A ++E + E AK + DK+ S +
Sbjct: 199 EEEDDITEPVPSFANISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTH 258
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
+ F+ L + + + + GFE P+++Q TIP ++ G D++ A +G GKTA F++ L
Sbjct: 259 SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
Query: 113 QQLDPVQGEVS---VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
++L +V V++LC RELA Q + + + + D+ + GG K L
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFT-DIMVCLCIGGLSLKLQEQEL 377
Query: 170 SKKETVPHIIVATPGRLKALVRDKH-IDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
K+ P I++ATPGR +R+ + +++ V+DE D++LE+ ++ +I +A
Sbjct: 378 RKR---PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED-GFADELNEIIQAC 433
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKL 288
P+ +Q M+FSAT++ ++ + R L P+ +FVD++ K T L Q ++++ + + +
Sbjct: 434 PKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK-KTTAKLLTQEFVRVRPQRELLRP 492
Query: 289 AQLL---DDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
A L+ +L + IIF +S A+++ + + A +HG + QE+R+ + F++
Sbjct: 493 AMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRD 552
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
+ ++TDV RGIDI+ I + INY+ P + YLHRVGR R G G AI+ ++ E
Sbjct: 553 GKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAIT-LAGEG 611
Query: 406 DEQVLAKIQERFDVKITEFPEEGVD 430
D +VL + + + T+ +D
Sbjct: 612 DRKVLKGVFKNSSAQNTKLVNRNLD 636
>At3g53110 [A] KOG0332 ATP-dependent RNA helicase
Length = 496
Score = 191 bits (485), Expect = 2e-48
Identities = 129/438 (29%), Positives = 226/438 (51%), Gaps = 28/438 (6%)
Query: 10 LEYSDNEQEVQVDNKATEVNAEGNGES---QAKDSDKKGSYVG----IHSTGFKDFLLKP 62
+E D+E+E + + + E +S + +DS+ K G ++ F+D L P
Sbjct: 41 VEDDDDEEEAVSELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSP 100
Query: 63 ELSRAI-IDCGFEHPSEVQQHTIPQSIHGTD--VLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
EL + + ++ FE PS++Q ++P + ++ QA +G GKT FVL L ++DP
Sbjct: 101 ELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTL 160
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
E + +C RELA Q + K+ T + H++
Sbjct: 161 REPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDST--RGAPAATRGAPVSAHVV 218
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRD----VQDIFRATPRDKQVM 235
+ TPG LK + K + L+H+K V DE D +L R D ++DI R P + QV+
Sbjct: 219 IGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNP-NFQVL 277
Query: 236 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA--QLLD 293
+FSAT ++ ++ R +++P ++FV E L L ++QY + +++ ++ Q+++
Sbjct: 278 LFSATFNETVKDFVARTVKDPNQLFVKRE-DLALDSVKQYKVVCPKEQNKIEVIKDQIME 336
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ Q IIFVK+ A ++ K L + +VHG++ + +R K FKE ++ ++
Sbjct: 337 LGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIA 396
Query: 354 TDVFGRGIDIERINLAINYDMPN-------EADQYLHRVGRAGRFGTKGLAISMISSED- 405
TDV RG D +R+NL +NY++P + + YLHRVGRAGRFG KG +++ +
Sbjct: 397 TDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGW 456
Query: 406 DEQVLAKIQERFDVKITE 423
D++V+ KI++ F+ + E
Sbjct: 457 DKEVMEKIEKYFEANVKE 474
>CE01338 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 363
Score = 190 bits (482), Expect = 4e-48
Identities = 117/368 (31%), Positives = 195/368 (52%), Gaps = 17/368 (4%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
LK EL R I GFE PS +Q+ + G DV Q+++G GKT + ++ LQ +D
Sbjct: 3 LKEELLRGIYGFGFEKPSAIQKSAVAPCTTGKDVTIQSQAGSGKTVISLIDILQGIDCED 62
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
+ V++L R +A + + + + T + + D ++ + + H++
Sbjct: 63 AHLQVILLAPQRGMAQRAHEQLKSLGRNLNVNATCLGF---------DTTAENDKISHVL 113
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
+ TP K + + D S +K FV+DE D++L + + + ++FR+ P+D QV++ SA
Sbjct: 114 MGTP---KDFLSNIPSDTSRIKMFVLDEADEMLSK-GFKDQIYEVFRSMPQDVQVVLLSA 169
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLDDLEFN 298
T+ E+ + RF+++P+ I V + +LTL G++Q+YI + + E K L LL
Sbjct: 170 TMPSEVLDVTNRFMRDPIRILVKKD-ELTLEGIRQFYINVQKDEWKFNCLCDLLKTSRET 228
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
Q +IF + R +LT+ L + HG+M+ ER K F R+ V+TD+
Sbjct: 229 QALIFCNTRRRVTQLTEQLMSIPIKVSCFHGNMEHNEREDMVKDFNSRNTRVLVTTDLMA 288
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
RG++I R +L INYD+ + Y+ R GR G FG+KGL IS +E+D L KI+ +
Sbjct: 289 RGMNI-RKSLIINYDVSGNMENYMLRNGRQGNFGSKGLPISFF-TENDISDLKKIENHYS 346
Query: 419 VKITEFPE 426
+I E PE
Sbjct: 347 TRIEEMPE 354
>Hs6005743 [A] KOG0332 ATP-dependent RNA helicase
Length = 479
Score = 189 bits (480), Expect = 7e-48
Identities = 118/386 (30%), Positives = 205/386 (52%), Gaps = 17/386 (4%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTL 112
F++ LKP+L + + GF PS++Q++ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 113 QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
Q++P + L ELA Q + K+ P++K A G + + +
Sbjct: 154 SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------Q 207
Query: 173 ETVPHIIVATPGR-LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
+ I++ TPG L + K ID +K FV+DE D ++ + I R PR+
Sbjct: 208 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267
Query: 232 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK-EKNRKLAQ 290
Q+++FSAT + ++ + +P I + E + TL ++QYY+ + + EK + L
Sbjct: 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCN 326
Query: 291 LLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRI 350
L + Q +IF + A+ L L+ + G M E+R A + F+E ++++
Sbjct: 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEAD------QYLHRVGRAGRFGTKGLAISMISSE 404
V+T+V RGID+E++++ IN+D+P + D YLHR+GR GRFG +GLA++M+ S+
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 405 DDEQVLAKIQERFDVKITEFPEEGVD 430
+L +IQE F+ KI + +D
Sbjct: 447 HSMNILNRIQEHFNKKIERLDTDDLD 472
>Hs8922886 [A] KOG0332 ATP-dependent RNA helicase
Length = 478
Score = 187 bits (476), Expect = 2e-47
Identities = 117/386 (30%), Positives = 205/386 (52%), Gaps = 17/386 (4%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTL 112
F++ LKP+L + + GF PS++Q++ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 113 QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
+++P + L ELA Q + K+ P++K A G + + +
Sbjct: 153 SRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------Q 206
Query: 173 ETVPHIIVATPGR-LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
+ I++ TPG L + K ID +K FV+DE D ++ + I R PR+
Sbjct: 207 KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 266
Query: 232 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK-EKNRKLAQ 290
Q+++FSAT + ++ + +P I + E + TL ++QYY+ + + EK + L
Sbjct: 267 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCN 325
Query: 291 LLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRI 350
L + Q +IF + A+ L L+ + G M E+R A + F+E ++++
Sbjct: 326 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 385
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEAD------QYLHRVGRAGRFGTKGLAISMISSE 404
V+T+V RGID+E++++ IN+D+P + D YLHR+GR GRFG +GLA++M+ S+
Sbjct: 386 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 445
Query: 405 DDEQVLAKIQERFDVKITEFPEEGVD 430
+L +IQE F+ KI + +D
Sbjct: 446 HSMNILNRIQEHFNKKIERLDTDDLD 471
>CE28369 [A] KOG0335 ATP-dependent RNA helicase
Length = 644
Score = 185 bits (470), Expect = 1e-46
Identities = 120/364 (32%), Positives = 196/364 (52%), Gaps = 25/364 (6%)
Query: 62 PELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL-----D 116
P + + G+ P+ VQ+H+IP + D++ A++G GKTA F+L +Q + D
Sbjct: 132 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 191
Query: 117 PVQGEV----------SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDI 166
V+ +VL RELA QI E +FS Y +++TA+ YGG E N
Sbjct: 192 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS-YKSNIQTAILYGGRE--NYR 248
Query: 167 DLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDV-Q 222
D +++ HI++ATPGRL ++ I L+ + V+DE D++L+ E +R+ V Q
Sbjct: 249 DQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQ 308
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK 282
+ T R MFSAT +EI+ + + FL++ T ++Q + +NE
Sbjct: 309 GMPPKTART--TAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEM 366
Query: 283 EKNRKLAQLL-DDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
EK L ++L ++ N V++FV++ ANEL LN ++++HG +KQ ER +
Sbjct: 367 EKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLE 426
Query: 342 AFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
F+ + I V+T V RG+DI + INYD+P ++D+Y+HR+GR GR G G+A S
Sbjct: 427 LFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFF 486
Query: 402 SSED 405
+ ++
Sbjct: 487 NDKN 490
>CE25531 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 508
Score = 185 bits (470), Expect = 1e-46
Identities = 108/310 (34%), Positives = 175/310 (55%), Gaps = 7/310 (2%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L+ +L R I GFE PS +QQ IP + DV+ QA+SG GKTA F +S LQ LD
Sbjct: 33 LREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQV 92
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
E ++L RELA QI+ L YM +V+ GGT DI K + H++
Sbjct: 93 RETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLGEDI---RKLDYGQHVV 148
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
TPGR+ ++R +++ +K V+DE D++L + + + DI+R P QV++ SA
Sbjct: 149 SGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSA 207
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLDDLEFN 298
TL EI + +F+ +P+ I V + +LTL G++Q+++ ++ +E K L L D L
Sbjct: 208 TLPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTIT 266
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
Q ++F + + + LT + +NF ++HG M+Q++R K F+ R+ +STDV+
Sbjct: 267 QAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWA 326
Query: 359 RGIDIERINL 368
RG+D+ +++L
Sbjct: 327 RGLDVPQVSL 336
Score = 62.8 bits (151), Expect = 1e-09
Identities = 26/56 (46%), Positives = 41/56 (72%), Gaps = 1/56 (1%)
Query: 370 INYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFP 425
INYD+PN + Y+HR+GR+GRFG KG+AI+ + +DD ++L I++ + +I E P
Sbjct: 447 INYDLPNNRELYIHRIGRSGRFGRKGVAINFV-KQDDVRILRDIEQYYSTQIDEMP 501
>CE24451 [A] KOG0335 ATP-dependent RNA helicase
Length = 641
Score = 185 bits (470), Expect = 1e-46
Identities = 120/364 (32%), Positives = 196/364 (52%), Gaps = 25/364 (6%)
Query: 62 PELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL-----D 116
P + + G+ P+ VQ+H+IP + D++ A++G GKTA F+L +Q + D
Sbjct: 129 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 188
Query: 117 PVQGEV----------SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDI 166
V+ +VL RELA QI E +FS Y +++TA+ YGG E N
Sbjct: 189 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS-YKSNIQTAILYGGRE--NYR 245
Query: 167 DLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDV-Q 222
D +++ HI++ATPGRL ++ I L+ + V+DE D++L+ E +R+ V Q
Sbjct: 246 DQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQ 305
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK 282
+ T R MFSAT +EI+ + + FL++ T ++Q + +NE
Sbjct: 306 GMPPKTART--TAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEM 363
Query: 283 EKNRKLAQLL-DDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
EK L ++L ++ N V++FV++ ANEL LN ++++HG +KQ ER +
Sbjct: 364 EKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLE 423
Query: 342 AFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
F+ + I V+T V RG+DI + INYD+P ++D+Y+HR+GR GR G G+A S
Sbjct: 424 LFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFF 483
Query: 402 SSED 405
+ ++
Sbjct: 484 NDKN 487
>YLL008w [A] KOG0338 ATP-dependent RNA helicase
Length = 752
Score = 184 bits (467), Expect = 2e-46
Identities = 118/422 (27%), Positives = 215/422 (49%), Gaps = 21/422 (4%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPE 63
E EE LE + E+ ++ + E A+ D KK Y +S +LK
Sbjct: 187 EQEEMTLEKGGKDDEIDEEDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPVLK-- 244
Query: 64 LSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS 123
+ G+ PS +Q TIP ++ G D++ A +G GKTA F++ +++L +++
Sbjct: 245 ---GLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIA 301
Query: 124 ---VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIV 180
V+VL RELA Q+ + + ++++ + + GG + +L + P I++
Sbjct: 302 STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR---PDIVI 358
Query: 181 ATPGRLKALVRDK-HIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSA 239
ATPGR +R+ ++ V+ V+DE D++LEE + ++ +I P ++Q ++FSA
Sbjct: 359 ATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEE-GFQDELNEIMGLLPSNRQNLLFSA 417
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNR-----KLAQLLDD 294
T++ +I+ + L+ P+ I +D K L Q ++++ +++ + L + LD
Sbjct: 418 TMNSKIKSLVSLSLKKPVRIMIDPPKKAATK-LTQEFVRIRKRDHLKPALLFNLIRKLDP 476
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
++++FV A+ L ++ +HG + QE+R+ FK E + + T
Sbjct: 477 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 536
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI--SSEDDEQVLAK 412
D+ RG+DI +I + INYDMP + YLHRVGR R G +G +++ + SS+D V A
Sbjct: 537 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAA 596
Query: 413 IQ 414
I+
Sbjct: 597 IK 598
>YOR046c [A] KOG0332 ATP-dependent RNA helicase
Length = 482
Score = 184 bits (466), Expect = 3e-46
Identities = 113/386 (29%), Positives = 197/386 (50%), Gaps = 19/386 (4%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTL 112
F + L PEL + I F+ PS++Q+ +P +H +++ Q++SG GKTA F L+ L
Sbjct: 94 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 153
Query: 113 QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
+++P + L +RELA Q K+ + E I+
Sbjct: 154 TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINA---- 209
Query: 173 ETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDK 232
+IV TPG + L+R K + L +K FV+DE D +L++ + + R P+D
Sbjct: 210 ----QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT 265
Query: 233 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL-NEKEKNRKLAQL 291
Q+++FSAT + +R ++ + N + + ++ + ++Q Y+ NE +K L +L
Sbjct: 266 QLVLFSATFADAVRQYAKKIVPNANTLELQTN-EVNVDAIKQLYMDCKNEADKFDVLTEL 324
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
+ IIFV + AN L L + +HG ++ +ER F+E ++
Sbjct: 325 YGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 384
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEAD------QYLHRVGRAGRFGTKGLAISMISSED 405
++T+V RGIDI +++ +NYD+P A+ Y+HR+GR GRFG KG+AIS + ++
Sbjct: 385 ITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 444
Query: 406 DEQVLAKIQERF-DVKITEFPEEGVD 430
+L+ IQ+ F D+++T P + D
Sbjct: 445 SFNILSAIQKYFGDIEMTRVPTDDWD 470
>Hs19743937 [A] KOG0338 ATP-dependent RNA helicase
Length = 796
Score = 183 bits (465), Expect = 4e-46
Identities = 123/420 (29%), Positives = 219/420 (51%), Gaps = 18/420 (4%)
Query: 5 AEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGI----HSTGFKDFLL 60
+E++ E + + + KA + + + + K + G + + F+D L
Sbjct: 166 SEDEASETDYSSADENILTKADTLKVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNL 225
Query: 61 KPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL--DPV 118
L +AI GF+ P+ +Q+ IP + G D+ A +G GKTA F L L++L P
Sbjct: 226 SRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPR 285
Query: 119 QGEVS-VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH 177
Q V+ V+VL REL Q+ + + +++ ++ T + GG + K+ L P
Sbjct: 286 QAPVTRVLVLVPTRELGIQVHSVTRQLAQFC-NITTCLAVGGLDVKSQEAAL---RAAPD 341
Query: 178 IIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMM 236
I++ATPGRL L LS ++ ++DE D++L+E +++I R +Q M+
Sbjct: 342 ILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY-FEEQMKEIIRMCSHHRQTML 400
Query: 237 FSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLN---EKEKNRKLAQLLD 293
FSAT++ E++ + L+NP+ IFV+ + L+Q +I++ E ++ +A LL
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPF-LRQEFIRIRPNREGDREAIVAALLT 459
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ V++F ++ +A+ + LL +HG++ Q +R+ + FK+ + I V+
Sbjct: 460 RTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVA 519
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TDV RG+DIE + IN+ MPN Y+HRVGR R G G ++S++ ED+ ++L +I
Sbjct: 520 TDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLV-GEDERKMLKEI 578
>CE07736 [A] KOG0335 ATP-dependent RNA helicase
Length = 720
Score = 182 bits (461), Expect = 1e-45
Identities = 122/384 (31%), Positives = 193/384 (49%), Gaps = 29/384 (7%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D + + R + G+ + +QQ+T+P G D+L A++G GKTA F+L + +
Sbjct: 300 FSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSR 359
Query: 115 L----DPVQGEVS-----VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
L D G ++L RELA QI NE +FS Y ++ YGG +
Sbjct: 360 LILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFS-YQSVMEIKPVYGGINVGYN 418
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDI- 224
+ K T IIV T GR+K D I L + V+DE D++++ + +++ I
Sbjct: 419 KSQIMKGCT---IIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQII 475
Query: 225 -FRATPRD--KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
++ P++ +Q MMFSAT ++ R+ L+ + D+ + Q + +
Sbjct: 476 NYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDR 535
Query: 282 KEKNRKLAQLL------------DDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHG 329
K KL +LL D+ + I+FV A+ L +++A+ PAIT+HG
Sbjct: 536 TSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHG 595
Query: 330 HMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAG 389
+Q+ER A K F+ K + ++T V RG+DI+ ++ INYDMPN D Y+HR+GR G
Sbjct: 596 AREQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTG 655
Query: 390 RFGTKGLAISMISSEDDEQVLAKI 413
R G G A S IS DD Q+L ++
Sbjct: 656 RVGNSGRATSFISLADDVQILPQL 679
>Hs4759278 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 181 bits (460), Expect = 1e-45
Identities = 119/419 (28%), Positives = 202/419 (47%), Gaps = 41/419 (9%)
Query: 44 KGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGK 103
KG + +KD L P + I CG++ P+ +Q+ IP + D++ A++G GK
Sbjct: 382 KGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGK 441
Query: 104 TAVFVL------STLQQLDPVQGEVS---VVVLCNARELAYQIRNEYLRFSKYMPDVKTA 154
TA F++ +TL ++D ++ ++L RELA QI E ++F K + ++T
Sbjct: 442 TAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL-GIRTV 500
Query: 155 VFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEE 214
GG + D + I++ATPGRL ++ ++++ LS V+DE D++++
Sbjct: 501 AVIGGISRE---DQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMID- 556
Query: 215 LDMRRDVQDIFRATP--------------------------RDKQVMMFSATLSQEIRPI 248
+ DVQ I P + +Q +MF+AT+ + +
Sbjct: 557 MGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERL 616
Query: 249 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTV 308
R +L+ P +++ K ++Q ++E EK +KL +L+ +IIFV
Sbjct: 617 ARSYLRRPAVVYIGSAGK-PHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKK 675
Query: 309 RANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINL 368
+ L K L + A T+HG QE+R K K I V+TDV GRGIDI+ +++
Sbjct: 676 GCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSM 735
Query: 369 AINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEE 427
+NYDM + Y+HR+GR GR G G+AI+ ++ ED Q + ++ P E
Sbjct: 736 VVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPE 794
>Hs17474597 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 820
Score = 181 bits (460), Expect = 1e-45
Identities = 119/419 (28%), Positives = 202/419 (47%), Gaps = 41/419 (9%)
Query: 44 KGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGK 103
KG + +KD L P + I CG++ P+ +Q+ IP + D++ A++G GK
Sbjct: 382 KGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGK 441
Query: 104 TAVFVL------STLQQLDPVQGEVS---VVVLCNARELAYQIRNEYLRFSKYMPDVKTA 154
TA F++ +TL ++D ++ ++L RELA QI E ++F K + ++T
Sbjct: 442 TAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPL-GIRTV 500
Query: 155 VFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEE 214
GG + D + I++ATPGRL ++ ++++ LS V+DE D++++
Sbjct: 501 AVIGGISRE---DQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMID- 556
Query: 215 LDMRRDVQDIFRATP--------------------------RDKQVMMFSATLSQEIRPI 248
+ DVQ I P + +Q +MF+AT+ + +
Sbjct: 557 MGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERL 616
Query: 249 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTV 308
R +L+ P +++ K ++Q ++E EK +KL +L+ +IIFV
Sbjct: 617 ARSYLRRPAVVYIGSAGK-PHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKK 675
Query: 309 RANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINL 368
+ L K L + A T+HG QE+R K K I V+TDV GRGIDI+ +++
Sbjct: 676 GCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSM 735
Query: 369 AINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEE 427
+NYDM + Y+HR+GR GR G G+AI+ ++ ED Q + ++ P E
Sbjct: 736 VVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPE 794
>At5g14610 [A] KOG0331 ATP-dependent RNA helicase
Length = 713
Score = 181 bits (460), Expect = 1e-45
Identities = 118/378 (31%), Positives = 192/378 (50%), Gaps = 14/378 (3%)
Query: 52 STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 111
+ GF +L+ P R + GF PS +Q + P ++ D++ AK+G GKT +++
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 287
Query: 112 LQQLDPVQGEV----SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDID 167
L + + +++VL RELA QI+ E L+F K + A YGG
Sbjct: 288 FMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGK-SSKISCACLYGGAPKGPQ-- 344
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRA 227
L + E I+VATPGRL ++ K I L V V+DE D++L+ + ++ I
Sbjct: 345 -LKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLD-MGFEPQIRKIVNE 402
Query: 228 TPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLH-GLQQYYIKLNEKEKNR 286
P +Q +M++AT +E+R I L NP ++ + + +L + + Q L EK+
Sbjct: 403 VPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHS 462
Query: 287 KLAQLLDDLE-FNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
+L Q+L E +++IIF + ++L + L + F A +HG Q ER F+
Sbjct: 463 RLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRS 521
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
+ V+TDV RG+D++ I + +NYD PN + Y+HR+GR GR G GLA + +D
Sbjct: 522 GRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQD 581
Query: 406 DEQV--LAKIQERFDVKI 421
+ L KI E + K+
Sbjct: 582 AKHASDLIKILEGANQKV 599
>7298204 [A] KOG0335 ATP-dependent RNA helicase
Length = 661
Score = 181 bits (459), Expect = 2e-45
Identities = 118/360 (32%), Positives = 193/360 (52%), Gaps = 21/360 (5%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL--DPVQ---GEVSVVV 126
G++ P+ +Q+ +IP G D++ A++G GKTA F+L L +L DP + G VV+
Sbjct: 264 GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 323
Query: 127 LCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
+ RELA QI NE +F+ + +K + YGGT +++ + +++ H+++ATPGRL
Sbjct: 324 VSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECITRG---CHVVIATPGRL 379
Query: 187 KALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRDKQVMMFSATLSQ 243
V I + V+DE D++L+ DMRR + + + Q +MFSAT +
Sbjct: 380 LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP--EHQTLMFSATFPE 437
Query: 244 EIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIF 303
EI+ + FL+N + + + Q Y ++N+ K KL ++L + + + I+F
Sbjct: 438 EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIY-EVNKYAKRSKLIEILSE-QADGTIVF 495
Query: 304 VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDI 363
V++ A+ L L+ FP ++HG Q +R + FK ++ ++T V RG+DI
Sbjct: 496 VETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI 555
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITE 423
+ I INYDMP++ D Y+HR+GR GR G G A S E D + A + VKI E
Sbjct: 556 KNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADL-----VKILE 610
>At2g33730 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 733
Score = 181 bits (458), Expect = 2e-45
Identities = 119/389 (30%), Positives = 193/389 (49%), Gaps = 31/389 (7%)
Query: 44 KGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGK 103
KGS + +++ L EL +A+ G++ PS +Q IP + DV+ A++G GK
Sbjct: 304 KGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
Query: 104 TAVFVLSTL---QQLDPVQGEVSV-----VVLCNARELAYQIRNEYLRFSKYMPDVKTAV 155
TA FVL L +L P+ E VV+ RELA QI E ++F+ Y+ T++
Sbjct: 364 TAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSI 423
Query: 156 FYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEEL 215
G + + + + E I++ATPGRL + ++ L+ V+DE D++++ +
Sbjct: 424 VGGQSIEEQGLKITQGCE----IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMID-M 478
Query: 216 DMRRDVQDIFRATPRD-----------------KQVMMFSATLSQEIRPICRRFLQNPLE 258
V + A P + MFSAT+ + + R++L+NP+
Sbjct: 479 GFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVV 538
Query: 259 IFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN 318
+ + K T + Q+ I + E EK +L +LLD+L I+FV + + + K L+
Sbjct: 539 VTIGTAGKTT-DLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLD 597
Query: 319 ASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEA 378
+ + T+HG QE+R + F+ + V+TDV GRGIDI + INYDMP
Sbjct: 598 KAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHI 657
Query: 379 DQYLHRVGRAGRFGTKGLAISMISSEDDE 407
+ Y HR+GR GR G G+A S ++ D E
Sbjct: 658 EMYTHRIGRTGRAGKSGVATSFLTLHDTE 686
>At5g60990 [A] KOG0330 ATP-dependent RNA helicase
Length = 454
Score = 180 bits (457), Expect = 3e-45
Identities = 122/386 (31%), Positives = 202/386 (51%), Gaps = 22/386 (5%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F + ++ EL +A G+++PS++Q +P ++ G DV+ A++G GKT F + LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 115 L-------DPVQGE-----VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEY 162
L +P +G VL RELA QI ++ + ++ AV GG +
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADI-SLRCAVLVGGIDR 129
Query: 163 KNDIDLLSKKETVPHIIVATPGRLKALVRD-KHIDLSHVKNFVIDECDKVLEELDMRRDV 221
L K+ PH VATPGRL + D K L +K V+DE D++L E D + +
Sbjct: 130 MQQTIALGKR---PH--VATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNE-DFEKSL 183
Query: 222 QDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
I P +++ +FSAT+++++R + R L+NP++I + T+ L+Q Y +
Sbjct: 184 NQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYS-TVDTLKQQYRFVAA 242
Query: 282 KEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
K K+ L +L ++ + +IF ++ L +L + F AI + G M Q +R+
Sbjct: 243 KYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALN 302
Query: 342 AFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
FK E I V TDV RG+DI +++ INYD+P + Y+HRVGR R G G+ IS++
Sbjct: 303 KFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLV 362
Query: 402 SSEDDEQVLAKIQERFDVKITEFPEE 427
+ + E + +I++ K+ E+P E
Sbjct: 363 NQYELEWYI-QIEKLIGKKLPEYPAE 387
>At3g06480 [A] KOG0331 ATP-dependent RNA helicase
Length = 1088
Score = 179 bits (455), Expect = 6e-45
Identities = 113/364 (31%), Positives = 185/364 (50%), Gaps = 15/364 (4%)
Query: 47 YVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAV 106
Y+ S+G L PE+ R ++ GF P+ +Q T P ++ D++ AK+G GKT
Sbjct: 434 YITFESSG-----LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG 488
Query: 107 FVLSTLQQLDPVQGEV----SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEY 162
+++ L + + +V++L RELA QI++E LRF + + YGG
Sbjct: 489 YLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGR-SSRISCTCLYGGAPK 547
Query: 163 KNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQ 222
L + E I+VATPGRL ++ K ID V V+DE D++L+ + ++
Sbjct: 548 GPQ---LKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLD-MGFEPQIR 603
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLH-GLQQYYIKLNE 281
I P +Q +M++AT +E+R I L NP+++ + +L + + QY + +
Sbjct: 604 KIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQ 663
Query: 282 KEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
EK R+L Q+L E +I ST R + +F A+ +HG Q ER
Sbjct: 664 MEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLN 723
Query: 342 AFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
F+ + + ++TDV RG+DI+ I + INYD P + Y+HR+GR GR G G+A +
Sbjct: 724 QFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFF 783
Query: 402 SSED 405
+ +D
Sbjct: 784 TEQD 787
>7304081 [A] KOG0338 ATP-dependent RNA helicase
Length = 782
Score = 179 bits (454), Expect = 7e-45
Identities = 125/414 (30%), Positives = 225/414 (54%), Gaps = 25/414 (6%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGES-QAKDSDKKGSYVGIHSTGFKDFLLKP 62
E + D L + ++ + KA E + E GE Q D+ + + T F L
Sbjct: 111 ELKHDNLRLREKKESKKKKKKAGEEDEEDEGEKMQFADTVEANEQI----TSFYQMNLSR 166
Query: 63 ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL--DPVQG 120
L RAI G+ +P+ +Q TIP ++ G D+ A +G GKTA ++L TL++L P+
Sbjct: 167 PLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNN 226
Query: 121 EV--SVVVLCNARELA---YQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETV 175
+ V+VL REL YQ+ + +F+ DV A+ GG + K +L +
Sbjct: 227 KAITRVLVLVPTRELGAQVYQVTKQLCQFTTI--DVGLAI--GGLDVKAQEAVLRQN--- 279
Query: 176 PHIIVATPGRLKALVRDK-HIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
P I++ATPGRL +++ L ++ ++DE D++L+E +++I + + +Q
Sbjct: 280 PDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEY-FAEQMKEIINSCCKTRQT 338
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE-KEKNRK--LAQL 291
M+FSAT+S++++ + L P+++FV++ ++ + L+Q +I++ E KE +R+ LA L
Sbjct: 339 MLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFN-LRQEFIRIREDKEGDREPILASL 397
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
+ + ++FV++ +A+ L LL A +HG++ Q++R+ K FKE + +
Sbjct: 398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVL 457
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
++TDV RG+DI + IN+ MP + Y+HRVGR R G G+++S+ ++
Sbjct: 458 IATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKE 511
>At1g55150 [A] KOG0331 ATP-dependent RNA helicase
Length = 501
Score = 178 bits (452), Expect = 1e-44
Identities = 114/393 (29%), Positives = 201/393 (51%), Gaps = 24/393 (6%)
Query: 16 EQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEH 75
+ EV+ K E+ EG KD K GF D++L+ E+ +A GF
Sbjct: 75 DTEVEEYRKLREITVEG------KDIPKPVK--SFRDVGFPDYVLE-EVKKA----GFTE 121
Query: 76 PSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP----VQGEVSVV-VLCNA 130
P+ +Q P ++ G D++ A++G GKT ++L + ++ G+ +V VL
Sbjct: 122 PTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPT 181
Query: 131 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALV 190
RELA QI+ E +F +KT YGG + L K I++ATPGRL ++
Sbjct: 182 RELAVQIQQEASKFGS-SSKIKTTCIYGGVPKGPQVRDLQKGV---EIVIATPGRLIDMM 237
Query: 191 RDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICR 250
+ +L V V+DE D++L+ + ++ I D+Q + +SAT +E+ + +
Sbjct: 238 ESNNTNLRRVTYLVLDEADRMLD-MGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSK 296
Query: 251 RFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVIIFVKSTVR 309
+FL NP ++ + ++Q ++E +K KL +LL+D+ + +++++F+ +
Sbjct: 297 KFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKG 356
Query: 310 ANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLA 369
+++T+ L +PA+++HG Q ER F+ + I +TDV RG+D++ +
Sbjct: 357 CDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYV 416
Query: 370 INYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
INYD P + Y+HR+GR GR G KG A + +
Sbjct: 417 INYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449
>SPAC1F7.02c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 578
Score = 177 bits (449), Expect = 3e-44
Identities = 129/430 (30%), Positives = 216/430 (50%), Gaps = 18/430 (4%)
Query: 3 HEAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKP 62
+E EE E D +Q V++++ E++ E E K + S F D L
Sbjct: 43 YEQEE---ENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTS-DIEKFSDLQLSE 98
Query: 63 ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGE- 121
+ +AI + GFE +E+Q+ +IP + G DVL AK+G GKT F++ T++ L ++ +
Sbjct: 99 NIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP 158
Query: 122 ---VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHI 178
V+++ RELA QI KY + GG + + D L K ++
Sbjct: 159 RNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLVKGV---NL 214
Query: 179 IVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD-KQVMM 236
+VATPGRL L K ++++ VIDE D++LE + +++ I + P + +Q ++
Sbjct: 215 LVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE-IGFEDEMRQIMKILPSENRQTLL 273
Query: 237 FSATLSQEIRPICRRFLQ-NPLEIFVDD-EAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
FSAT + ++ + R L+ PL + VD + T+ GL+Q Y+ ++ ++ L L
Sbjct: 274 FSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKR 333
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
+VI+F+ S + +LLN + P + +HG KQ+ R + F EK I + T
Sbjct: 334 NLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCT 393
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
+V RG+DI ++ + YD P++ Y+HRVGR R GTKG S++ E +
Sbjct: 394 NVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSELGFLRYL 452
Query: 415 ERFDVKITEF 424
+ V + EF
Sbjct: 453 KTAKVSLNEF 462
>At5g08610 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 827
Score = 177 bits (449), Expect = 3e-44
Identities = 131/438 (29%), Positives = 220/438 (49%), Gaps = 32/438 (7%)
Query: 14 DNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGF 73
D+E + + KA A + + SY+ T F F L P +AI D GF
Sbjct: 322 DDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLS--KTRFDQFPLSPLSLKAIKDAGF 379
Query: 74 EHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL--------DPVQGEVSVV 125
E + VQ+ T+P + G DVL +AK+G GKT F+L ++ + D Q + V+
Sbjct: 380 ETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVL 439
Query: 126 VLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVP-HIIVATPG 184
V+C RELA Q E KY P + V GGT+ + + +T P I+VATPG
Sbjct: 440 VVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTE---QRRMQTNPCQILVATPG 496
Query: 185 RLKALVRDKH---IDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATL 241
RLK + + L VK V+DE D +L+ + RRD++ I A P+ +Q +FSAT+
Sbjct: 497 RLKDHIENTSGFATRLMGVKVLVLDEADHLLD-MGFRRDIERIIAAVPKQRQTFLFSATV 555
Query: 242 SQEIRPICRRFLQNPLEIF--VDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLL------D 293
+E+R IC L+ E V + + T + Q Y+ + +++ L +L D
Sbjct: 556 PEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYM-IASLDRHFSLLHVLLKEHIAD 614
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
++++ +VIIF + + + LL+ + +H Q R F++ + I V+
Sbjct: 615 NVDY-KVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVT 673
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
+DV RG+D ++L + +P++ +QY+HR+GR GR G +G + +++ +E ++ +
Sbjct: 674 SDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPW-EEYFMSSV 732
Query: 414 QERFDVKITEFPEEGVDP 431
+ D+ IT+ P +DP
Sbjct: 733 K---DLPITKSPLPPIDP 747
>At3g58570 [A] KOG0335 ATP-dependent RNA helicase
Length = 646
Score = 177 bits (449), Expect = 3e-44
Identities = 136/429 (31%), Positives = 210/429 (48%), Gaps = 45/429 (10%)
Query: 22 DNKATEVNAEGN-GESQAKDSDKKGSYVG--------IHSTG---------FKDFLLKPE 63
D + TE N GN G + ++++ + + I ++G F + L
Sbjct: 97 DRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEA 156
Query: 64 LSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL------QQLDP 117
L+ I C + P+ VQ++ IP G D++ A++G GKTA F + Q ++
Sbjct: 157 LNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIER 216
Query: 118 VQGEVSV----VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKE 173
+G V V+L RELA QI +E +FS Y VK V YGGT I L E
Sbjct: 217 PRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGTPVNQQIREL---E 272
Query: 174 TVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPR 230
I+VATPGRL L+ + L V+ +DE D++L+ E +R+ VQ + P
Sbjct: 273 RGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 332
Query: 231 DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQ 290
+Q M+FSAT +EI+ + FL N + + V T +Q+ +++ +K L
Sbjct: 333 VRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEF-VHDSDKRSHLMD 391
Query: 291 LLDDLEFNQ-------VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAF 343
LL N ++FV++ A+ L L + FPA T+HG Q+ER ++F
Sbjct: 392 LLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSF 451
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
K I V+TDV RG+DI + +N+D+PN+ D Y+HR+GR GR G GLA + +
Sbjct: 452 KTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFN- 510
Query: 404 EDDEQVLAK 412
D+ +AK
Sbjct: 511 -DNNTTMAK 518
>ECU09g1200 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 425
Score = 176 bits (446), Expect = 6e-44
Identities = 125/419 (29%), Positives = 211/419 (49%), Gaps = 28/419 (6%)
Query: 27 EVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQ 86
+ + G + +D S + + T ++D+ LK +L + I GFE PS +Q+ I
Sbjct: 13 DTRSSGTEIREFEDLRSDSSQIRMFDT-WEDYGLKEDLLKGIYSIGFETPSFIQKAAIQP 71
Query: 87 SIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSK 146
I G D+ QA+SG GKT F ++ LQ D Q ++VL + RE+A Q +
Sbjct: 72 IIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGC 131
Query: 147 YMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVID 206
+M + A+ GG+ D L KK PHI+V TPGR++ ++ + + ++K FVID
Sbjct: 132 FM-GARVALLSGGSPIAADKVALEKK---PHIVVGTPGRVEHMININELSMDNIKLFVID 187
Query: 207 ECDKVLEELDMRRDVQDIF-RATPRDK-QVMMFSATLSQEIRPICRRFLQNP--LEIFVD 262
E D++L + + V+ IF R T +D+ Q+ MFSAT +E + L NP +++ +
Sbjct: 188 EADEML-KAGFQEQVKSIFRRITNKDEVQIAMFSATYDEEELRVSEEILINPVIIDLRYN 246
Query: 263 DEAKLTLHGLQQYYIKLNEKEKNRK------------LAQLLDDLEFNQVIIFVKSTVRA 310
D+ TL G++QY+I L ++ RK L + Q I+F+ S A
Sbjct: 247 DQ---TLKGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYDIFRKQRLGQSIVFINSKEDA 303
Query: 311 NELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAI 370
+ L + + + Q ER F+ R +S+ + RGIDI+ +++
Sbjct: 304 RIVYDWLIRHEWECELISAELTQAERERTLNRFRGGTGRCLISSGLLSRGIDIQNLSVVF 363
Query: 371 NYDMPN--EADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEE 427
D+P+ Y+HR+GR+GR+G KG+AI+++ E + + L I+ ++ I E P +
Sbjct: 364 CLDVPSFERKSTYIHRIGRSGRYGRKGIAINIV-YEHELKNLKAIERFYNTTIKELPAD 421
>SPBP8B7.16c [A] KOG0331 ATP-dependent RNA helicase
Length = 550
Score = 176 bits (445), Expect = 8e-44
Identities = 116/386 (30%), Positives = 200/386 (51%), Gaps = 28/386 (7%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
GF +++LK + GFE P+ +QQ P ++ G D++ + +G GKT + L +
Sbjct: 128 GFPNYVLKE-----VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 114 Q------LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDI- 166
L P G + V+VL RELA QI+ E +F K ++ YGG I
Sbjct: 183 HINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPRGPQIR 240
Query: 167 DLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 226
DL+ E I +ATPGRL ++ +L V V+DE D++L+ + ++ I
Sbjct: 241 DLIRGVE----ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVD 295
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNR 286
D+Q +MFSAT +E++ + R +L + +++ V H ++Q ++ +K
Sbjct: 296 QIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRA 355
Query: 287 KLAQLLDDL---EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAF 343
+L + ++++ N+V+IF + A+++T+ L +PA+ +HG Q+ER F
Sbjct: 356 RLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEF 415
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
+ + I V+TDV RGID++ I NYD P + Y+HR+GR GR G KG A + +S
Sbjct: 416 RTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTS 475
Query: 404 EDDEQ------VLAKIQERFDVKITE 423
++ +Q +L++ ++ D K+ E
Sbjct: 476 DNAKQARELVSILSEAKQDIDPKLEE 501
>At2g42520 [A] KOG0335 ATP-dependent RNA helicase
Length = 633
Score = 176 bits (445), Expect = 8e-44
Identities = 137/446 (30%), Positives = 218/446 (48%), Gaps = 35/446 (7%)
Query: 4 EAEEDLLEYSDNEQE---VQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLL 60
E E + E D+E E + DN T +N + + + S G V F + L
Sbjct: 112 EREVNPFENDDSEPEPAFTEQDN--TVINFDAYEDIPIETS---GDNVPPPVNTFAEIDL 166
Query: 61 KPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL------QQ 114
L+ I C + P+ VQ+H IP + G D++ A++G GKTA F + Q
Sbjct: 167 GEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQH 226
Query: 115 LDPVQGEVSV----VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
+ +G +V V+L RELA QI +E +FS Y VK V YGGT L
Sbjct: 227 VQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPINQQ---LR 282
Query: 171 KKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRA 227
+ E I+VATPGRL L+ + + ++ +DE D++L+ E +R+ V+ +
Sbjct: 283 ELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMP 342
Query: 228 TPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRK 287
+Q ++FSAT +EI+ + FL N + + V T +Q+ L + +K
Sbjct: 343 PRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVL-DSDKRSH 401
Query: 288 LAQLLDDLEFNQV-------IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARY 340
L LL N + ++FV++ A+ L L + FPA ++HG Q+ER
Sbjct: 402 LMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVAL 461
Query: 341 KAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISM 400
KAFK I V+TDV RG+DI + +N+D+PN+ D Y+HR+GR GR G GLA +
Sbjct: 462 KAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAF 521
Query: 401 ISSEDDE--QVLAKIQERFDVKITEF 424
+ + + LA++ + + ++ E+
Sbjct: 522 FNDGNTSLARPLAELMQEANQEVPEW 547
>At3g01540 [A] KOG0331 ATP-dependent RNA helicase
Length = 619
Score = 175 bits (444), Expect = 1e-43
Identities = 115/393 (29%), Positives = 197/393 (49%), Gaps = 23/393 (5%)
Query: 48 VGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVF 107
+ +TGF PEL R ++ GF P+ +Q + P ++ G D++ AK+G GKT +
Sbjct: 158 MSFEATGFP-----PELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGY 212
Query: 108 VLSTLQQLDPVQGEV----SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYK 163
++ L ++ + +++VL RELA QI+ E ++F + T ++ G +
Sbjct: 213 LIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGP 272
Query: 164 NDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQD 223
DL E I+VATPGRL ++ + I L + V+DE D++L+ + ++
Sbjct: 273 QLRDL----ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD-MGFEPQIRK 327
Query: 224 IFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLH-GLQQYYIKLNEK 282
I + P +Q +M++AT + +R I L NP ++ + + +L + + Q+ +
Sbjct: 328 IVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPM 387
Query: 283 EKNRKLAQLLDDLE-FNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
EK R+L Q+L E ++VIIF + ++LT+ L F A +HG Q ER
Sbjct: 388 EKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLN 446
Query: 342 AFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
F+ + V+TDV RG+D++ I +NYD PN + Y+HR+GR GR G G A +
Sbjct: 447 QFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
Query: 402 SSEDDE------QVLAKIQERFDVKITEFPEEG 428
+D + ++L +R +I E G
Sbjct: 507 GDQDSKHASDLIKILEGANQRVPPQIREMATRG 539
>At1g31970 [A] KOG0331 ATP-dependent RNA helicase
Length = 537
Score = 175 bits (444), Expect = 1e-43
Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 20/400 (5%)
Query: 13 SDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDC- 71
S+ ++ V K E G GES+ + G V + L ++DC
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 72 -GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVF----VLSTLQQLDPVQG-----E 121
FE PS +Q HT P + G D++ AK+G GKT F ++ L++ + G
Sbjct: 132 KTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 122 VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVA 181
+ +VL RELA QI ++ LR + +K+ YGG+ I + + I++
Sbjct: 192 PTCLVLSPTRELAVQI-SDVLREAGEPCGLKSICVYGGSSKGPQISAI---RSGVDIVIG 247
Query: 182 TPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATL 241
TPGRL+ L+ + LS V V+DE D++L+ + V+ I T + +Q++MFSAT
Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRMLD-MGFEEPVRFILSNTNKVRQMVMFSATW 306
Query: 242 SQEIRPICRRFLQ-NPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL---EF 297
++ + + F+ NP+++ + H + Q L+E+ ++++L LL+ +
Sbjct: 307 PLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQK 366
Query: 298 NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVF 357
N+V++F V A L + L + A+++HG+ Q ER FKE + V+TDV
Sbjct: 367 NRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVA 426
Query: 358 GRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397
RG+DI + + INY P + Y+HR+GR GR G KG+A
Sbjct: 427 ARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVA 466
>At5g63630 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 522
Score = 174 bits (442), Expect = 2e-43
Identities = 139/451 (30%), Positives = 225/451 (49%), Gaps = 37/451 (8%)
Query: 8 DLLEYSDNEQEVQVDN-KATEVNAEGNGESQAKDSDK----KGSYVGIHSTGFKDFLLKP 62
DLL D E++ D K V+A G + ++DK SY + T F + L P
Sbjct: 6 DLLSEDDEEEDQDYDFLKKKAVSAFGFDKENVIEADKTRNANDSY--LTKTRFDHYPLSP 63
Query: 63 ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL------- 115
+AI D G+E + VQ+ T+P + G DVL +AK+G GKT F+L +++ +
Sbjct: 64 LSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTS 123
Query: 116 -DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK-E 173
D + + +V+C RELA Q E KY P + V GGT + L K+ +
Sbjct: 124 PDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTR----LGLEQKRMQ 179
Query: 174 TVP-HIIVATPGRLKALVRDKH---IDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
T P I+VATPGRLK + + L VK V+DE D +L+ + R+D++ I A P
Sbjct: 180 TNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLD-MGFRKDIERIISAVP 238
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQ----YYIKLNEKEKN 285
+++Q +FSAT+ +E+R IC L+ E FV+ + T+ QQ + I ++ +
Sbjct: 239 KERQTFLFSATVPEEVRQICLVALRRDHE-FVNCVHEGTIETHQQVRQMHMIASLDRHFS 297
Query: 286 RKLAQLLDDLEFN---QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKA 342
L + + N +VI+F + + + LL N +H Q R
Sbjct: 298 LLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNE 357
Query: 343 FKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
F++ + I V++DV RG+D + L + +P + +QY+HR+GR GR G +G I +++
Sbjct: 358 FRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLA 417
Query: 403 SEDDEQVLAKIQERFDVKITEFPEEGVDPST 433
+E L+ ++ D+ IT+ P +DP T
Sbjct: 418 PW-EEYFLSSLK---DLPITKSPLPSIDPET 444
>At1g16280 [A] KOG0340 ATP-dependent RNA helicase
Length = 491
Score = 174 bits (442), Expect = 2e-43
Identities = 121/431 (28%), Positives = 217/431 (50%), Gaps = 15/431 (3%)
Query: 9 LLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAI 68
++ S + V+ ++ +++++ N K ++ S +T F+ L
Sbjct: 14 IMSKSRKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETC 73
Query: 69 IDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLC 128
+ G P+ VQ H +P+ + G DVL A++G GKTA F L L +L V +V+
Sbjct: 74 KELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVT 133
Query: 129 NARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND-IDLLSKKETVPHIIVATPGRLK 187
RELA+Q+ ++ + +++ +V GG + + L+S+ PHI++ TPGR+K
Sbjct: 134 PTRELAFQLAEQFKALGSCL-NLRCSVIVGGMDMLTQTMSLVSR----PHIVITTPGRIK 188
Query: 188 ALVR---DKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQE 244
L+ D S K V+DE D+VL+ + + +++ IF+ P+ +Q ++FSAT++
Sbjct: 189 VLLENNPDVPPVFSRTKFLVLDEADRVLD-VGFQDELRTIFQCLPKSRQTLLFSATMTSN 247
Query: 245 IRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLE---FNQVI 301
++ + N + E T+ L Q +I ++ K L +L +E +
Sbjct: 248 LQALLEHS-SNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAM 306
Query: 302 IFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGI 361
IFV + L+ +L+ I +H Q R++ FK + I ++TDV RG+
Sbjct: 307 IFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGL 366
Query: 362 DIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKI 421
DI ++L INYD+P + Y+HRVGR R G GLA+S+I +E D +++ KI+E K+
Sbjct: 367 DIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSII-TETDVKLIHKIEEEVGKKM 425
Query: 422 TEFPEEGVDPS 432
+ ++ + S
Sbjct: 426 EPYNKKVITDS 436
>7299061 [A] KOG0335 ATP-dependent RNA helicase
Length = 798
Score = 174 bits (441), Expect = 2e-43
Identities = 118/386 (30%), Positives = 198/386 (50%), Gaps = 30/386 (7%)
Query: 45 GSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKT 104
G V + T F D L + + ++ P+ VQ+H IP I+G D++ A++G GKT
Sbjct: 287 GQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKT 346
Query: 105 AVFVLSTLQQL------DPVQGEVSV---------VVLCNARELAYQIRNEYLRFSKYMP 149
A F++ L Q+ P Q +VL RELA QI E +F+ Y
Sbjct: 347 AAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFA-YRS 405
Query: 150 DVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECD 209
++ AV YGG N + + + + H+IVATPGRL+ ++ + L +++ V+DE D
Sbjct: 406 RMRPAVLYGGN---NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEAD 462
Query: 210 KVLE---ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAK 266
++L+ E +RR V+ + +Q +MFSAT ++I+ + FL N + + V
Sbjct: 463 RMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGS 522
Query: 267 LTLHGLQQYYIKLNEKEKNRKLAQLLDDL----EFNQ---VIIFVKSTVRANELTKLLNA 319
T + Q + + E +K L LL + E+ + +IFV++ A+ L + L
Sbjct: 523 -TSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQ 581
Query: 320 SNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEAD 379
N P ++HG Q+ER + F+ + I V+T V RG+DI + IN+D+P++ +
Sbjct: 582 CNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVE 641
Query: 380 QYLHRVGRAGRFGTKGLAISMISSED 405
+Y+HR+GR GR G G+A S + ++
Sbjct: 642 EYVHRIGRTGRMGNLGVATSFFNEKN 667
>At5g63120 [A] KOG0331 ATP-dependent RNA helicase
Length = 564
Score = 174 bits (440), Expect = 3e-43
Identities = 107/357 (29%), Positives = 183/357 (50%), Gaps = 11/357 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+D + AI GF P+ +Q P ++ G D++ A++G GKT ++L L
Sbjct: 140 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 199
Query: 115 LD--PVQGEVS---VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
+ P G+ V++L RELA QI+ E +F V++ YGG I L
Sbjct: 200 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFG-LRSGVRSTCIYGGAPKGPQIRDL 258
Query: 170 SKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
+ I++ATPGRL ++ +H +L V V+DE D++L+ + ++ I
Sbjct: 259 RRGV---EIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVSQIR 314
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA 289
D+Q +++SAT +E+ + R+FL++P + + + Q + EK +L
Sbjct: 315 PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLL 374
Query: 290 QLLDDL-EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEK 348
LL L + ++++IFV++ +++T+ L +PA+ +HG Q ER FK
Sbjct: 375 TLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 434
Query: 349 RICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
I +TDV RG+D++ I +NYD PN + Y+HR+GR GR G KG+A + + ++
Sbjct: 435 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDN 491
>7303950 [A] KOG0340 ATP-dependent RNA helicase
Length = 521
Score = 173 bits (439), Expect = 4e-43
Identities = 116/371 (31%), Positives = 186/371 (49%), Gaps = 10/371 (2%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L+P L + + G + + +QQ IP + G D + AK+G GKT F L L++L
Sbjct: 14 LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
+VL ELAYQI ++L + M V+ V GGT+ + L ++ PHI+
Sbjct: 74 VSHFALVLTPTHELAYQISEQFLVAGQAM-GVRVCVVSGGTDQMVESQKLMQR---PHIV 129
Query: 180 VATPGRLKA-LVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFS 238
VA PGRL L ++K V+DE D++L D + I R P+ +Q + FS
Sbjct: 130 VAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNG-DFDESLSIIERCLPKTRQNLFFS 188
Query: 239 ATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLL----DD 294
AT+ I+ + + + D T+ L Q Y+ + +++ L + L ++
Sbjct: 189 ATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYREE 248
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
E V+IF + L+ L + +HG M+Q+ER+A FK + R ++T
Sbjct: 249 NENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIAT 308
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
DV RG+DI + L +N+ +P +Y+HRVGR R G KG++IS+ D ++LA I+
Sbjct: 309 DVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAIE 368
Query: 415 ERFDVKITEFP 425
E + K+TE P
Sbjct: 369 EEINTKLTEHP 379
>YOR204w [A] KOG0335 ATP-dependent RNA helicase
Length = 604
Score = 173 bits (438), Expect = 5e-43
Identities = 117/355 (32%), Positives = 181/355 (50%), Gaps = 23/355 (6%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPV--------QGEV-- 122
F P+ VQ++++P +G D++ A++G GKT F+ L + QG
Sbjct: 162 FTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQ 221
Query: 123 -----SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH 177
+ V++ RELA QI +E +F+ Y VK V YGG+ N L + E
Sbjct: 222 RKAYPTAVIMAPTRELATQIFDEAKKFT-YRSWVKACVVYGGSPIGNQ---LREIERGCD 277
Query: 178 IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRDKQV 234
++VATPGRL L+ I L++VK V+DE D++L+ E +R V+D ++Q
Sbjct: 278 LLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQT 337
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
+MFSAT +I+ + R FL + + + V T + Q + + ++K L LL
Sbjct: 338 LMFSATFPADIQHLARDFLSDYIFLSVGRVGS-TSENITQKVLYVENQDKKSALLDLLSA 396
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
+IFV++ A++LT L NF A +HG Q ER AF+ + V+T
Sbjct: 397 STDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLVAT 456
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
V RG+DI + INYD+P++ D Y+HR+GR GR G GLA + +SE+ V
Sbjct: 457 AVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511
>Hs22057246 [A] KOG0336 ATP-dependent RNA helicase
Length = 631
Score = 173 bits (438), Expect = 5e-43
Identities = 113/379 (29%), Positives = 197/379 (51%), Gaps = 16/379 (4%)
Query: 55 FKD-FLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
FKD F P+L ++II G P+ +Q P + G D++ A++G GKT +++
Sbjct: 223 FKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFI 282
Query: 114 QLD--PVQGEV----SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDID 167
LD P+ E ++VL RELA + E ++S +K+ YGG I+
Sbjct: 283 HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIE 340
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRA 227
+SK II+ATPGRL L + ++L + VIDE DK+L+ ++ ++ I
Sbjct: 341 DISKGVD---IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD-MEFEPQIRKILLD 396
Query: 228 TPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRK 287
D+Q +M SAT +R + +L++P+ ++V + + ++ ++Q I EKEK
Sbjct: 397 VRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRAL 456
Query: 288 LAQLLDDLEFN-QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEF 346
+ ++++ N +VI+FV A++L+ N A ++HG+ +Q ++ + FK
Sbjct: 457 TQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSG 516
Query: 347 EKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDD 406
+I ++TD+ RG+D+ + NYD P D Y+HRVG GR G G ++++I+ D
Sbjct: 517 NIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDS 576
Query: 407 EQV--LAKIQERFDVKITE 423
+ L KI +R + + E
Sbjct: 577 KMAGELIKILDRANQSVPE 595
>YPL119c [A] KOG0335 ATP-dependent RNA helicase
Length = 617
Score = 172 bits (436), Expect = 9e-43
Identities = 117/355 (32%), Positives = 181/355 (50%), Gaps = 23/355 (6%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL-----DPV--------- 118
F P+ VQ+++IP G D++ A++G GKT F+ +L PV
Sbjct: 174 FTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYS 233
Query: 119 -QGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH 177
+G S +VL RELA QI E +F+ Y V+ V YGG N + + +
Sbjct: 234 RKGYPSALVLAPTRELATQIFEEARKFT-YRSWVRPCVVYGGAPIGNQ---MREVDRGCD 289
Query: 178 IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRDKQV 234
++VATPGRL L+ + L+++K V+DE D++L+ E +R V++ + ++Q
Sbjct: 290 LLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQT 349
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
+MFSAT +I+ + R FL N + + V T + Q + +++ +K L LL
Sbjct: 350 LMFSATFPVDIQHLARDFLDNYIFLSVGRVGS-TSENITQRILYVDDMDKKSALLDLLSA 408
Query: 295 LEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
+IFV++ A++LT L NF A +HG Q ER AFK I V+T
Sbjct: 409 EHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVAT 468
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
V RG+DI + INYD+P++ D Y+HR+GR GR G G+A S +S + V
Sbjct: 469 AVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIV 523
>7298989 [A] KOG0336 ATP-dependent RNA helicase
Length = 703
Score = 172 bits (435), Expect = 1e-42
Identities = 116/353 (32%), Positives = 181/353 (50%), Gaps = 16/353 (4%)
Query: 62 PELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS----TLQQLDP 117
P++ I GF PS +Q P + G D++ A++G GKT F+L T Q P
Sbjct: 292 PDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTP 351
Query: 118 --VQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETV 175
+G +V+VL RELA QI E ++S +K YGG I S E
Sbjct: 352 RGTRGGANVLVLAPTRELALQIEMEVKKYS--FRGMKAVCVYGGGNRNMQI---SDLERG 406
Query: 176 PHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM 235
II+ TPGRL L+ ID+S + V+DE D++L+ + ++ + D+Q +
Sbjct: 407 AEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLD-MGFEPQIRKVMLDIRPDRQTI 465
Query: 236 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNR--KLAQLLD 293
M SAT +R + + +++NP+++ V H ++Q IKL E + ++ + +
Sbjct: 466 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQI-IKLMEDDMDKFNTITSFVK 524
Query: 294 DLEF-NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICV 352
++ +++IIF VRA++L+ L F +HG+ Q +R K RI V
Sbjct: 525 NMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILV 584
Query: 353 STDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
+TDV RG+DIE I INYD P+ ++Y+HRVGR GR G +G +IS + ED
Sbjct: 585 ATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637
>SPBC543.06c [A] KOG0340 ATP-dependent RNA helicase
Length = 453
Score = 171 bits (434), Expect = 2e-42
Identities = 120/382 (31%), Positives = 194/382 (50%), Gaps = 18/382 (4%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D + P L + P+++Q+ I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+ ++L RELA QI ++ + ++K A+ GG + LSK+
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANL-NLKHALIVGGMDMIRQSIDLSKR-- 125
Query: 175 VPHIIVATPGRLKALVRDKHID----LSHVKNFVIDECDKVLEELDMRRDVQDIFRATP- 229
PH++VATPGRL L+R + L +K V+DE D++L D+ D F P
Sbjct: 126 -PHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPT-FADDLDDCFSVLPA 183
Query: 230 -RDKQVMMFSATLSQEIRPICRRFLQN---PLEIFVDDEAKLTLHG-LQQYYIKLNEKEK 284
D+Q ++F+AT++ IR + + +N PL ++ + +++ LQQ YI ++ + +
Sbjct: 184 SEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVR 243
Query: 285 NRKLAQLLDDLEF--NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKA 342
L LL E IIFV T A + +L +H M Q ERI
Sbjct: 244 EAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGR 303
Query: 343 FKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
F+ +I V+TDV RG+DI + L IN+D+P + D Y+HRVGR R G G +IS+++
Sbjct: 304 FRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVT 363
Query: 403 SEDDEQVLAKIQERFDVKITEF 424
D + V A I++R K++E+
Sbjct: 364 ERDVDLVHA-IEDRVGTKLSEY 384
>At3g18600 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 568
Score = 171 bits (434), Expect = 2e-42
Identities = 126/443 (28%), Positives = 216/443 (48%), Gaps = 25/443 (5%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAK--------DSDKKGSYVG---IHS 52
+AEE +N E Q ++ G E + + + +K VG + +
Sbjct: 29 KAEEKTHTVEENADETQKKSEKKVKKVRGKIEEEEEKVEAMEDGEDEKNIVIVGKGIMTN 88
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
F L + S AI + GF++ +++Q +I + G DVL A++G GKT F++ +
Sbjct: 89 VTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
Query: 113 QQL-----DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDID 167
+ L P G V+V+C RELA Q +N K+ + V GG +++
Sbjct: 149 ELLFKERFSPRNG-TGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVI-GGNNRRSEAQ 206
Query: 168 LLSKKETVPHIIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 226
++ ++++ATPGRL L K H+K VIDE D++LEE + D+ I +
Sbjct: 207 RIASGS---NLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEE-NFEEDMNKILK 262
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDD-EAKLTLHGLQQYYIKLNEKEKN 285
P+ +Q +FSAT + +++ + R L +P+ + VDD K+T GL+Q Y + K++
Sbjct: 263 ILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRL 322
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
L L ++++F + T+++ S+ +HG M Q R + F +
Sbjct: 323 ILLISFLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMK 382
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGR-FGTKGLAISMISSE 404
+K I + TDV RG+DI ++ I YD P++ +Y+HRVGR R G KG A+ ++ E
Sbjct: 383 AKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPE 442
Query: 405 DDEQVLAKIQERFDVKITEFPEE 427
+ + + + VK EF E+
Sbjct: 443 ELQFIRYLKAAKVPVKELEFNEK 465
>7294797 [A] KOG0339 ATP-dependent RNA helicase
Length = 791
Score = 171 bits (434), Expect = 2e-42
Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 13/362 (3%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
T F F +L +A+ + P+ +Q +P ++ G D++ AK+G GKTA F+ L
Sbjct: 269 TSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPML 328
Query: 113 ------QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDI 166
+QL P G + ++ L REL+ QI NE +F K + GG++++
Sbjct: 329 MHVMDQKQLKPGDGPIGLI-LAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSK 387
Query: 167 DLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 226
L E IIVATPGR+ +V+ K +L V V+DE D++ + V+ I
Sbjct: 388 AL----EQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFH-MGFEPQVRSICN 442
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEK-N 285
D+Q +MFSAT + I + R L +P+ I D + Q Y+ N +K N
Sbjct: 443 HVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWN 502
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
L L+ L V+IFV V A ++ L + + +HG M Q +R FK
Sbjct: 503 WLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKR 562
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
E I V+TDV RG+DI I +NYD + + + HR+GR GR G KG A ++++ +D
Sbjct: 563 KECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKD 622
Query: 406 DE 407
E
Sbjct: 623 KE 624
>YNL112w [A] KOG0331 ATP-dependent RNA helicase
Length = 546
Score = 171 bits (432), Expect = 3e-42
Identities = 111/362 (30%), Positives = 186/362 (50%), Gaps = 22/362 (6%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
GF D++L + GF+ P+ +Q P ++ G D++ A +G GKT + L +
Sbjct: 119 GFPDYVLNEVKAE-----GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 114 QLD------PVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDID 167
++ P G + V+VL RELA QI+ E +F + ++ YGG I
Sbjct: 174 HINAQPLLAPGDGPI-VLVLAPTRELAVQIQTECSKFG-HSSRIRNTCVYGGVPKSQQIR 231
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRA 227
LS+ I++ATPGRL ++ +L V V+DE D++L+ + ++ I
Sbjct: 232 DLSRGS---EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD-MGFEPQIRKIVDQ 287
Query: 228 TPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRK 287
D+Q +M+SAT +E++ + +L +P+++ V H + Q +++ EK +
Sbjct: 288 IRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDR 347
Query: 288 LAQLLD----DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAF 343
L + L+ D E+ + +IF + +++TK L +PA+ +HG Q ER + F
Sbjct: 348 LNKYLETASQDNEY-KTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEF 406
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
+ I V+TDV RGID++ IN INYDMP + Y+HR+GR GR G G AIS +
Sbjct: 407 RNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTE 466
Query: 404 ED 405
++
Sbjct: 467 QN 468
>CE25121 [A] KOG0335 ATP-dependent RNA helicase
Length = 763
Score = 170 bits (430), Expect = 4e-42
Identities = 112/375 (29%), Positives = 186/375 (48%), Gaps = 29/375 (7%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F + L + + + G+ + +QQ+ +P G D++ A++G GKTA F+L + +
Sbjct: 343 FAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIMTR 402
Query: 115 LDP-----VQGEVSV----VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
L GE ++L RELA QI NE +F+ Y ++ YGG +
Sbjct: 403 LIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFA-YQTMMEIKPVYGGLAVGYN 461
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDI- 224
+ K T IIV T GR+K + I L + FV+DE D++++ + D++ I
Sbjct: 462 KGQIEKGAT---IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV 518
Query: 225 -FRATPR--DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
+ + PR ++Q +MFSAT ++ R FL+ + D+ + Q + +
Sbjct: 519 NYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCER 578
Query: 282 KEKNRKLAQLLD------------DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHG 329
EK KL +LL ++ + ++FV A+ L +L+++ PAIT+HG
Sbjct: 579 SEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHG 638
Query: 330 HMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAG 389
+Q ER + F+ K + ++T V RG+DI+ ++ INYDMP+ D Y+HR+GR G
Sbjct: 639 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 698
Query: 390 RFGTKGLAISMISSE 404
R G G A S IS +
Sbjct: 699 RVGNSGRATSFISED 713
>CE09012 [A] KOG0335 ATP-dependent RNA helicase
Length = 974
Score = 169 bits (429), Expect = 6e-42
Identities = 117/389 (30%), Positives = 191/389 (49%), Gaps = 30/389 (7%)
Query: 41 SDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSG 100
SDKK V T F + L + + + G+ + +QQ+T+P G D++ A++G
Sbjct: 541 SDKKPVGVKTCKT-FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTG 599
Query: 101 LGKTAVFVLSTLQQLDP-----VQGEVSV----VVLCNARELAYQIRNEYLRFSKYMPDV 151
GKTA F+L + +L GE ++L REL QI NE +F+ Y +
Sbjct: 600 SGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA-YQTMM 658
Query: 152 KTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKV 211
+ YGG + + K T IIV T GR+K + I L + FV+DE D++
Sbjct: 659 EIRPVYGGLAVGYNKGQIEKGAT---IIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRM 715
Query: 212 LEELDMRRDVQDI--FRATPR--DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL 267
++ + D+ I + + P+ ++Q +MFSAT ++ R L+ + D+
Sbjct: 716 IDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGA 775
Query: 268 TLHGLQQYYIKLNEKEKNRKLAQLL------------DDLEFNQVIIFVKSTVRANELTK 315
+ Q + K + EK KL ++L ++ + I+FV A+ L
Sbjct: 776 ANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLAS 835
Query: 316 LLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMP 375
+L+++ PAIT+HG +Q ER + F+ K + ++T V RG+DI+ ++ INYDMP
Sbjct: 836 ILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP 895
Query: 376 NEADQYLHRVGRAGRFGTKGLAISMISSE 404
+ D Y+HR+GR GR G G A S IS +
Sbjct: 896 DNIDDYIHRIGRTGRVGNAGRATSFISED 924
>7296891 [A] KOG0341 DEAD-box protein abstrakt
Length = 619
Score = 169 bits (429), Expect = 6e-42
Identities = 109/361 (30%), Positives = 192/361 (52%), Gaps = 29/361 (8%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSV------- 124
G ++P+ +Q +P + G D++ A +G GKT VFVL + + ++ E S+
Sbjct: 196 GIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVI--MFALEQEYSLPFERNEG 253
Query: 125 ---VVLCNARELAYQIRNEYLRFSKY-----MPDVKTAVFYGGTEYKNDIDLLSKKETVP 176
+++C +RELA Q +SK+ MP++++ + GG +D++S+
Sbjct: 254 PYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGV--- 310
Query: 177 HIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMM 236
HI+VATPGRL ++ K + L + +DE D++++ + DV+ IF +Q ++
Sbjct: 311 HIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMID-MGFEEDVRTIFSFFKGQRQTLL 369
Query: 237 FSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQY-YIKLNEKEKNRKLAQLLDDL 295
FSAT+ ++I+ R L P+ I V +++ QQ Y+K + K+ LLD L
Sbjct: 370 FSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVK-----QEAKVVYLLDCL 424
Query: 296 EFNQ--VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ V+IF + + + + L A+ +HG QEER A++ +K + V+
Sbjct: 425 QKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVA 484
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TDV +G+D + INYDMP++ + Y+HR+GR GR TKGLA ++I+ ++ VL +
Sbjct: 485 TDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDL 544
Query: 414 Q 414
+
Sbjct: 545 K 545
>At3g22330 [A] KOG0331 ATP-dependent RNA helicase
Length = 620
Score = 169 bits (427), Expect = 1e-41
Identities = 121/423 (28%), Positives = 210/423 (49%), Gaps = 18/423 (4%)
Query: 17 QEVQVDNKATEVNAEGNGESQAKDSDKKGSY-VGIHSTGFKDFLLKPELSRAIIDCGFEH 75
Q +D +A+ V+ G S++ + S VG + + PE+ +A+ G E
Sbjct: 67 QSGPLDFRASMVSQAGFAISESSERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEK 126
Query: 76 PSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS------VVVLCN 129
+Q+ + ++ G D++ +A++G GKT F + + ++ + +VL
Sbjct: 127 LFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAP 186
Query: 130 ARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKAL 189
RELA Q+ E F + P + T YGGT + L V V TPGR+ L
Sbjct: 187 TRELARQVEKE---FRESAPSLDTICLYGGTPIGQQMRQLDYGVDVA---VGTPGRVIDL 240
Query: 190 VRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPIC 249
++ ++LS V+ V+DE D++L+ + DV+ I P +Q MMFSAT+ IR +
Sbjct: 241 MKRGALNLSEVQFVVLDEADQMLQ-VGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLT 299
Query: 250 RRFLQNPLEI-FVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD-LEFNQVIIFVKST 307
+++L NPL + V D + G+ Y I + + + L+ + + + I+F ++
Sbjct: 300 KKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTK 359
Query: 308 VRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERIN 367
A+ L+ L A +F +HG + Q +R F++ I V+TDV RG+D+ ++
Sbjct: 360 RDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVD 418
Query: 368 LAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEE 427
L I+Y++PN + ++HR GR GR G KG AI +I S+D + + I+ + TE P
Sbjct: 419 LIIHYELPNNTETFVHRTGRTGRAGKKGSAI-LIYSQDQSRAVKIIEREVGSRFTELPSI 477
Query: 428 GVD 430
V+
Sbjct: 478 AVE 480
>Hs7662318 [A] KOG0334 RNA helicase
Length = 1032
Score = 168 bits (425), Expect = 2e-41
Identities = 116/366 (31%), Positives = 188/366 (50%), Gaps = 18/366 (4%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ------LDPVQGEVSVV 125
G+E P+ +Q IP + G D++ AK+G GKT F+L + L+ +G ++V+
Sbjct: 391 GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVI 450
Query: 126 VLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR 185
+ RELA QI E +FSK + ++ YGGT I L + IIV TPGR
Sbjct: 451 -MTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISEQIAELKRGA---EIIVCTPGR 505
Query: 186 LKALVR---DKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
+ ++ + +L V V+DE D++ + + V I D+Q +MFSAT
Sbjct: 506 MIDMLAANSGRVTNLRRVTYVVLDEADRMFD-MGFEPQVMRIVDNVRPDRQTVMFSATFP 564
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVI 301
+ + + RR L P+E+ V + + ++Q I + E++K KL +LL E VI
Sbjct: 565 RAMEALARRILSKPIEVQVGGRS-VVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVI 623
Query: 302 IFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGI 361
IFV A+ L K L +++P +++HG + Q +R + FK ++ V+T V RG+
Sbjct: 624 IFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGL 683
Query: 362 DIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKI 421
D++ + L +NY PN + Y+HR GR GR G KG A + I +ED + I + ++
Sbjct: 684 DVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFI-TEDQARYAGDIIKALELSG 742
Query: 422 TEFPEE 427
T P +
Sbjct: 743 TAVPPD 748
>CE26887 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 730
Score = 168 bits (425), Expect = 2e-41
Identities = 112/385 (29%), Positives = 192/385 (49%), Gaps = 43/385 (11%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL- 112
GF D E+ +A+ + G+ P+ +Q+ IP + DV+ A++G GKTA F+L L
Sbjct: 307 GFPD-----EVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 113 --QQLDPVQGEVS------VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKN 164
L ++ + +++ RELA QI E +F K + +KT GG +
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLL-GIKTVSVIGGASRE- 419
Query: 165 DIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE----------- 213
D K +++ATPGRL ++ ++++ L+ ++DE D++L+
Sbjct: 420 --DQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVL 477
Query: 214 ----ELDMRRDVQDI---------FRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIF 260
+ +M++D + F + +Q +MF+AT+S I + R++L+ P +
Sbjct: 478 EYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVH 537
Query: 261 VDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNAS 320
+ K T ++Q + E K +KL ++L+ +IIFV A+ L+K L
Sbjct: 538 IGSAGKPT-ERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKL 596
Query: 321 NFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQ 380
F +HG Q++R +A KE I V+TDV GRGID++ ++L +NYDM +
Sbjct: 597 GFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIED 656
Query: 381 YLHRVGRAGRFGTKGLAISMISSED 405
Y HR+GR GR G G AI+ ++ +D
Sbjct: 657 YTHRIGRTGRAGKHGKAITFLTPDD 681
>CE24878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 769
Score = 168 bits (425), Expect = 2e-41
Identities = 112/385 (29%), Positives = 192/385 (49%), Gaps = 43/385 (11%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL- 112
GF D E+ +A+ + G+ P+ +Q+ IP + DV+ A++G GKTA F+L L
Sbjct: 307 GFPD-----EVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 113 --QQLDPVQGEVS------VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKN 164
L ++ + +++ RELA QI E +F K + +KT GG +
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLL-GIKTVSVIGGASRE- 419
Query: 165 DIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE----------- 213
D K +++ATPGRL ++ ++++ L+ ++DE D++L+
Sbjct: 420 --DQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVL 477
Query: 214 ----ELDMRRDVQDI---------FRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIF 260
+ +M++D + F + +Q +MF+AT+S I + R++L+ P +
Sbjct: 478 EYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVH 537
Query: 261 VDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNAS 320
+ K T ++Q + E K +KL ++L+ +IIFV A+ L+K L
Sbjct: 538 IGSAGKPT-ERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKL 596
Query: 321 NFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQ 380
F +HG Q++R +A KE I V+TDV GRGID++ ++L +NYDM +
Sbjct: 597 GFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIED 656
Query: 381 YLHRVGRAGRFGTKGLAISMISSED 405
Y HR+GR GR G G AI+ ++ +D
Sbjct: 657 YTHRIGRTGRAGKHGKAITFLTPDD 681
>SPAC31A2.07c [A] KOG0337 ATP-dependent RNA helicase
Length = 848
Score = 167 bits (424), Expect = 2e-41
Identities = 130/439 (29%), Positives = 208/439 (46%), Gaps = 55/439 (12%)
Query: 13 SDNEQEVQVDNKATEVNAEGNG--------ESQAKDSDKKGSYVGIHSTGFKDFLLKPEL 64
+DN+++ +N V+ E +G ES + KKG+ ++ F+ L L
Sbjct: 25 TDNQKDKH-ENVGENVSDEDDGNYIASKLLESNRRTKGKKGNG---KASNFQSMGLNQTL 80
Query: 65 SRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP--VQGEV 122
RAI GF+ P+ +Q+ TIP + G DV+ A++G GKTA FV+ ++ L
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNT 140
Query: 123 SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVAT 182
++L RELA Q FSK D+++ GG + LLS K P I+VAT
Sbjct: 141 RALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVGGVSLEEQFSLLSGK---PDIVVAT 196
Query: 183 PGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
PGR L + ++LS ++ V DE D+ L E+ + +I A P +Q ++FSATL
Sbjct: 197 PGRFLHLKVEMKLELSSIEYVVFDEADR-LFEMGFAAQLTEILHALPTSRQTLLFSATLP 255
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLT------------------LHGLQQYYIKL----- 279
+ + + LQ+P+ + +D E+K++ L + Q IKL
Sbjct: 256 RTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDN 315
Query: 280 ----------NEKEKNRKLAQLLDDLEF---NQVIIFVKSTVRANELTKLLNASNFPAIT 326
N K++ R L L E + ++FV + +++LL + +
Sbjct: 316 VRPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSK 375
Query: 327 VHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVG 386
++G + QE R+ F+ + + V TDV RGIDI + INYD P + ++HRVG
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 387 RAGRFGTKGLAISMISSED 405
R R G G A S++ +ED
Sbjct: 436 RTARAGRTGWAYSLVRAED 454
>Hs21327697 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 167 bits (424), Expect = 2e-41
Identities = 109/369 (29%), Positives = 192/369 (51%), Gaps = 18/369 (4%)
Query: 72 GFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCN 129
GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L +++ ++ + L
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAP 61
Query: 130 ARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR-LKA 188
ELA Q + K+ DV+ G D+ + II+ TPG L
Sbjct: 62 TYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQ------IIIGTPGTVLDW 115
Query: 189 LVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPI 248
+ K IDL+ ++ FV+DE D +++ I RA P + Q+++FSAT +
Sbjct: 116 CFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHF 175
Query: 249 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL-NEKEKNRKLAQLLDDLEFNQVIIFVKST 307
R + +P I + E +LTL+ ++QYY+ + K+K + L + + Q IIF ++
Sbjct: 176 AERIIPDPNVIKLRKE-ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTR 234
Query: 308 VRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERIN 367
A LT + + G + E+R + + F++ ++++ ++T+V RGID++++
Sbjct: 235 RNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVT 294
Query: 368 LAINYDMP------NEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKI 421
+ +N+D+P + + YLHR+GR GRFG KGLA +MI D+ L KIQ+ F+ I
Sbjct: 295 IVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDELPSLMKIQDHFNSSI 353
Query: 422 TEFPEEGVD 430
+ E +D
Sbjct: 354 KQLNAEDMD 362
>At3g22310 [A] KOG0331 ATP-dependent RNA helicase
Length = 610
Score = 167 bits (424), Expect = 2e-41
Identities = 116/399 (29%), Positives = 200/399 (50%), Gaps = 17/399 (4%)
Query: 40 DSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKS 99
DS+ GS G D + PE+ +A+ G E +Q+ + ++ G D++ +A++
Sbjct: 103 DSESVGSSGGGDGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRART 162
Query: 100 GLGKTAVFVLSTLQQLDPVQGE------VSVVVLCNARELAYQIRNEYLRFSKYMPDVKT 153
G GKT F + + ++ + +VL RELA Q+ E F + P + T
Sbjct: 163 GTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKE---FRESAPSLDT 219
Query: 154 AVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE 213
YGGT + L+ V V TPGR+ L++ ++LS V+ V+DE D++L+
Sbjct: 220 ICLYGGTPIGQQMRELNYGIDVA---VGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQ 276
Query: 214 ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEI-FVDDEAKLTLHGL 272
+ DV+ I + P +Q MMFSAT+ IR + +++L NPL I V D + G+
Sbjct: 277 -VGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGI 335
Query: 273 QQYYIKLNEKEKNRKLAQLLDDL-EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHM 331
Y I + + + L+ + + + I+F ++ A+ L L A ++ +HG +
Sbjct: 336 TMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGL-AKSYKCEALHGDI 394
Query: 332 KQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRF 391
Q +R F++ I V+TDV RG+D+ ++L I+Y++PN + ++HR GR GR
Sbjct: 395 SQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRA 454
Query: 392 GTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVD 430
G KG AI +I +D + + I++ + E P V+
Sbjct: 455 GKKGSAI-LIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 492
>7295314 [A] KOG0331 ATP-dependent RNA helicase
Length = 811
Score = 167 bits (424), Expect = 2e-41
Identities = 115/400 (28%), Positives = 195/400 (48%), Gaps = 21/400 (5%)
Query: 44 KGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGK 103
KG V S F++ + I GF P+ +Q P ++ G D++ A++G GK
Sbjct: 141 KGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGK 200
Query: 104 TAVFVLSTL------QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFY 157
T +VL + +L+ G +++V L RELA QI+ + F T +F
Sbjct: 201 TLAYVLPAVVHINNQPRLERGDGPIALV-LAPTRELAQQIQQVAIEFGSNTHVRNTCIFG 259
Query: 158 GGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDM 217
G + + DL E I++ATPGRL + L V+DE D++L+ +
Sbjct: 260 GAPKGQQARDL----ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLD-MGF 314
Query: 218 RRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYI 277
++ I + D+QV+M+SAT +E+R + FL N +++ + + H + Q
Sbjct: 315 EPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVD 374
Query: 278 KLNEKEKNRKLAQLLDDLEFN---QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQE 334
+E EK KL +LL D+ + IIFV++ R +E+T+ ++ + A +HG Q+
Sbjct: 375 VCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQ 434
Query: 335 ERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTK 394
ER +F+ I V+TDV RG+D++ + INYD P+ ++ Y+HR+GR GR
Sbjct: 435 ERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNT 494
Query: 395 GLAISMIS------SEDDEQVLAKIQERFDVKITEFPEEG 428
G A ++ + + D QVL + + + K+ G
Sbjct: 495 GTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNG 534
>7293060 [A] KOG0334 RNA helicase
Length = 1224
Score = 167 bits (424), Expect = 2e-41
Identities = 114/365 (31%), Positives = 189/365 (51%), Gaps = 16/365 (4%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST----LQQLDPVQGEVSV-VV 126
GFE P+ +Q IP + G D++ AK+G GKT F+L L Q G+ ++ ++
Sbjct: 529 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAII 588
Query: 127 LCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
+ REL QI + +FSK + ++ YGGT I L + IIV TPGR+
Sbjct: 589 MAPTRELCMQIGKDIRKFSKSL-GLRPVCVYGGTGISEQIAELKRGA---EIIVCTPGRM 644
Query: 187 KALVR---DKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQ 243
++ + +L V V+DE D++ + + V I D+Q +MFSAT +
Sbjct: 645 IDMLAANSGRVTNLRRVTYVVLDEADRMFD-MGFEPQVMRIIDNVRPDRQTVMFSATFPR 703
Query: 244 EIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVII 302
++ + RR L+ P+E+ V + + ++Q+ + LN+ K KL +LL E +I+
Sbjct: 704 QMEALARRILKKPIEVIVGGRS-VVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIV 762
Query: 303 FVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGID 362
FV A+ L + L +++P +++HG + Q +R + FK + R+ ++T V RG+D
Sbjct: 763 FVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLD 822
Query: 363 IERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKIT 422
++ + L +NYD+PN + Y+HR GR GR G KG A + I+ E + I D+ T
Sbjct: 823 VKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPE-QSRYAGDIIRAMDLSGT 881
Query: 423 EFPEE 427
P E
Sbjct: 882 LIPAE 886
>HsM7019399 [A] KOG0332 ATP-dependent RNA helicase
Length = 369
Score = 167 bits (423), Expect = 3e-41
Identities = 109/369 (29%), Positives = 192/369 (51%), Gaps = 18/369 (4%)
Query: 72 GFEHPSEVQQHTIPQSIHGT--DVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCN 129
GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L +++ ++ + L
Sbjct: 2 GFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQCLCLAP 61
Query: 130 ARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR-LKA 188
ELA Q + K+ DV+ G D+ + II+ TPG L
Sbjct: 62 TYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDITKQ------IIIGTPGTVLDW 115
Query: 189 LVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPI 248
+ K IDL+ ++ FV+DE D +++ I RA P + Q+++FSAT +
Sbjct: 116 CFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFEDSVWHF 175
Query: 249 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL-NEKEKNRKLAQLLDDLEFNQVIIFVKST 307
R + +P I + E +LTL+ ++QYY+ + K+K + L + + Q IIF ++
Sbjct: 176 AERIIPDPNVIKLRKE-ELTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTR 234
Query: 308 VRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERIN 367
A LT + + G + E+R + + F++ ++++ ++T+V RGID++++
Sbjct: 235 RNAKWLTVEMIQDGHQVSLLSGELTVEQRASITQRFRDGKEKVLITTNVCARGIDVKQVT 294
Query: 368 LAINYDMP------NEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKI 421
+ +N+D+P + + YLHR+GR GRFG KGLA +MI D+ L KIQ+ F+ I
Sbjct: 295 IVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDELPSLMKIQDHFNSSI 353
Query: 422 TEFPEEGVD 430
+ E +D
Sbjct: 354 KQLNAEDMD 362
>CE28485 [K] KOG4284 DEAD box protein
Length = 963
Score = 167 bits (423), Expect = 3e-41
Identities = 98/315 (31%), Positives = 171/315 (54%), Gaps = 9/315 (2%)
Query: 91 TDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPD 150
+D+L QAKSG GKT VF + ++ LD + V++ RE++ QI+ + +
Sbjct: 50 SDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP--TG 107
Query: 151 VKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDK 210
+T+V+ GG+ +K ++L+ K+T P I++ TPGR+ LV+ +++SHV FV+DE DK
Sbjct: 108 ARTSVYVGGSAHK--LNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADK 165
Query: 211 VLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEI-FVDDEAKLTL 269
+++E+ R D+ I + P+ +QV +FSAT + + + FL++ + F D+ +L
Sbjct: 166 LMDEV-FRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQL-- 222
Query: 270 HGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHG 329
G++QY + KL +L + + Q ++F + + L +S V
Sbjct: 223 FGIKQYVVA-KCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSS 281
Query: 330 HMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAG 389
M Q++R + +I VS+D+ RGID + +NL +N D + Y HR+GRA
Sbjct: 282 AMSQKDRQLAVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAA 341
Query: 390 RFGTKGLAISMISSE 404
RFG G A++++ E
Sbjct: 342 RFGAHGAAVTLLEDE 356
>At3g58510 [A] KOG0335 ATP-dependent RNA helicase
Length = 603
Score = 167 bits (422), Expect = 4e-41
Identities = 122/385 (31%), Positives = 189/385 (48%), Gaps = 23/385 (5%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL-- 112
F D L L+ I C + P+ VQ+H IP + D++ A++G GKTA F +
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212
Query: 113 ----QQLDPVQGEVSV----VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKN 164
Q ++ +G +V V+L RELA QI +E +FS Y VK V YGGT
Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPIHQ 271
Query: 165 DIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDV 221
L + E I+VATPGRL L+ + + ++ +DE D++L+ E +R+ V
Sbjct: 272 Q---LRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIV 328
Query: 222 QDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
+ + +Q M+FSAT +I+ + F+ N + + V T + Q + E
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSST-DLITQRVEFVQE 387
Query: 282 KEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
+K L LL Q K+ A+ L L + FPA ++HG Q+ER +
Sbjct: 388 SDKRSHLMDLLHAQRETQD----KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALR 443
Query: 342 AFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
+FK I V+TDV RG+DI + +N+D+PN+ D Y+HR+GR GR G G+A +
Sbjct: 444 SFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFF 503
Query: 402 SSEDDEQVLAKIQERFDVKITEFPE 426
+E++ Q+ + E E PE
Sbjct: 504 -NENNAQLARSLAELMQEANQEVPE 527
>At4g33370 [A] KOG0341 DEAD-box protein abstrakt
Length = 542
Score = 166 bits (420), Expect = 6e-41
Identities = 111/377 (29%), Positives = 193/377 (50%), Gaps = 27/377 (7%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL-- 112
F D L R + D G HP+ +Q +P + G D++ A +G GKT VFVL +
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIIL 158
Query: 113 ----QQLDPV---QGEVSVVVLCNARELAYQIRNEYLRFSKYM-----PDVKTAVFYGGT 160
+ + P+ +G +++V+ C +RELA Q + +F + P +++ + GG
Sbjct: 159 ALQEEIMMPIAAGEGPIALVI-CPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGV 217
Query: 161 EYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRD 220
+ ++ +D++ K HI+VATPGRLK ++ K + L + +DE D++++ L D
Sbjct: 218 DMRSQLDVVKKGV---HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD-LGFEDD 273
Query: 221 VQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQY-YIKL 279
++ +F +Q ++FSAT+ +I+ L P+ + V L +Q+ Y+K
Sbjct: 274 IRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVK- 332
Query: 280 NEKEKNRKLAQLLDDLEFNQ--VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERI 337
+ K+ LL+ L+ V+IF ++ +++ + L A+ +HG QE+R
Sbjct: 333 ----QEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRD 388
Query: 338 ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397
FK +K + V+TDV +G+D I INYDMP E + Y+HR+GR GR G G+A
Sbjct: 389 YAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIA 448
Query: 398 ISMISSEDDEQVLAKIQ 414
+ I+ E L ++
Sbjct: 449 TTFINKNQSEITLLDLK 465
>Hs21071032 [A] KOG0341 DEAD-box protein abstrakt
Length = 622
Score = 166 bits (419), Expect = 8e-41
Identities = 113/377 (29%), Positives = 188/377 (48%), Gaps = 27/377 (7%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ- 113
FK+ + R + G HP+ +Q IP + G D++ A +G GKT VF L +
Sbjct: 183 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 242
Query: 114 --------QLDPVQGEVSVVVLCNARELAYQ---IRNEYLRFSKY--MPDVKTAVFYGGT 160
+G +++ C +RELA Q I Y R + P ++ A+ GG
Sbjct: 243 CLEQEKRLPFSKREGPYGLII-CPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 301
Query: 161 EYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRD 220
K ++ + H++VATPGRL L++ K + L + +DE D++++ + D
Sbjct: 302 SVKEQMETIRHGV---HMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMID-MGFEGD 357
Query: 221 VQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQY-YIKL 279
++ IF +Q ++FSAT+ ++I+ + L P+ I V +L +Q+ Y+K
Sbjct: 358 IRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVK- 416
Query: 280 NEKEKNRKLAQLLDDLEFNQ--VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERI 337
+ K+ LL+ L+ V+IF + + + + L A+ +HG QEER
Sbjct: 417 ----EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERT 472
Query: 338 ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397
+AF+E +K + V+TDV +G+D I INYDMP E + Y+HR+GR GR G G+A
Sbjct: 473 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIA 532
Query: 398 ISMISSEDDEQVLAKIQ 414
+ I+ DE VL ++
Sbjct: 533 TTFINKACDESVLMDLK 549
>At5g08620 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 563
Score = 165 bits (418), Expect = 1e-40
Identities = 124/388 (31%), Positives = 192/388 (48%), Gaps = 37/388 (9%)
Query: 38 AKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQA 97
AK SD SY+ T F F L P + I D GF+ + VQ+ T+P + G D+L +A
Sbjct: 70 AKTSD---SYLS--KTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKA 124
Query: 98 KSGLGKTAVFVLSTLQQL--------DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMP 149
K+G GKT F+L +++ + D + V+V+C RELA Q E KY P
Sbjct: 125 KTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHP 184
Query: 150 DVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHID--------LSHVK 201
+ V GGT+ + L K I+VATPGRLK HID L VK
Sbjct: 185 SIGVQVVIGGTKLPTEQRRLQKSPC--QILVATPGRLK-----DHIDNTSGFATRLMGVK 237
Query: 202 NFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIF- 260
V+DE D +L+ + RR+++ I A P+ +Q +FSAT+S E+R IC L+ E
Sbjct: 238 VLVLDEADHLLD-MGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVN 296
Query: 261 -VDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLL-----DDLEFNQVIIFVKSTVRANELT 314
V + A T + Q Y+ + L LL D++ + +VIIF + + +
Sbjct: 297 CVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVGY-KVIIFCTTAMVTRLVA 355
Query: 315 KLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDM 374
LL + +H Q R F++ + I V++DV RG+D ++L + +
Sbjct: 356 DLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGL 415
Query: 375 PNEADQYLHRVGRAGRFGTKGLAISMIS 402
P++ +QY+HR+GR GR G +G + +++
Sbjct: 416 PSDREQYIHRLGRTGRKGKEGEGVLLLA 443
>Hs9507237 [A] KOG0335 ATP-dependent RNA helicase
Length = 724
Score = 164 bits (416), Expect = 2e-40
Identities = 114/396 (28%), Positives = 200/396 (49%), Gaps = 20/396 (5%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F++ L L+ I G+ + VQ+++IP + G D++ A++G GKTA F+L L
Sbjct: 290 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 349
Query: 115 L--DPVQG-------EVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
+ D + E +++ REL QI E +FS + V+ V YGGT+ +
Sbjct: 350 MMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFS-FGTCVRAVVIYGGTQLGHS 408
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEE---LDMRRDVQ 222
I + + +I+ ATPGRL ++ + I L +K V+DE D++L+ +M++ +
Sbjct: 409 IRQIVQG---CNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS 465
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK 282
+ +Q +MFSAT +EI+ + FL++ + +QQ +++ +
Sbjct: 466 CPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQF 525
Query: 283 EKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKA 342
K KL ++L ++ + ++FV++ +A+ + L ++HG +Q ER
Sbjct: 526 SKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 585
Query: 343 FKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
F+ + + V+T V RG+DIE + IN+D+P+ D+Y+HR+GR GR G G AIS
Sbjct: 586 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645
Query: 403 SEDDE---QVLAKIQERFDVKITEFPEEGVDPSTYL 435
E D Q L K+ + + EE + STY+
Sbjct: 646 LESDNHLAQPLVKVLTDAQQDVPAWLEE-IAFSTYI 680
>CE17559 [A] KOG0339 ATP-dependent RNA helicase
Length = 811
Score = 164 bits (415), Expect = 2e-40
Identities = 110/361 (30%), Positives = 183/361 (50%), Gaps = 11/361 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVF----VLS 110
F F L AI +E P+ +Q IP ++ G DVL AK+G GKTA + ++
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326
Query: 111 TLQQLDPVQGEVSV-VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
+ Q D GE V V++ RELA Q+ E +F K + GG++++ +L
Sbjct: 327 IMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQ 386
Query: 170 SKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
++ ++V TPGR+ LV+ + V DE D++ + + V+ I
Sbjct: 387 NEGA---EMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFD-MGFEAQVKSISDHVR 442
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA 289
D+Q +MFSAT Q++ + R L +P+ I + + Q+ ++ N+ K L
Sbjct: 443 PDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLI 502
Query: 290 Q-LLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEK 348
+ L++ +V+IFV + + ++ K L +F + +HG M Q ER F++ +
Sbjct: 503 RNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KS 561
Query: 349 RICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQ 408
+I V+TDV RG+DI I IN+DM + D ++HR+GR GR G KG A ++++ +D E
Sbjct: 562 QILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEM 621
Query: 409 V 409
V
Sbjct: 622 V 622
>7298459 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 802
Score = 164 bits (415), Expect = 2e-40
Identities = 113/371 (30%), Positives = 183/371 (48%), Gaps = 41/371 (11%)
Query: 68 IID-CGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL---------QQLDP 117
IID G++ P+ +Q+ IP + D++ A++G GKT F++ L ++L+
Sbjct: 408 IIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLED 467
Query: 118 VQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH 177
V +++ RELA QI E +F + + ++T V GG + L
Sbjct: 468 VDQGPYAIIMAPTRELAQQIEEETTKFGQPL-GIRTVVVVGGLSREEQGFRL---RLGCE 523
Query: 178 IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP-------- 229
I++ATPGRL ++ ++++ L+ V+DE D++++ + DVQ I P
Sbjct: 524 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDT 582
Query: 230 -----------------RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGL 272
+ +Q +MF+AT+ + + R +L+ P +++ K T
Sbjct: 583 EEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTE 642
Query: 273 QQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMK 332
Q Y+ + E +K +KL ++L VIIFV A+ L K L + + T+HG
Sbjct: 643 QIVYM-MGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 701
Query: 333 QEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
QE+R A K K I V+TDV GRGIDI+ ++L INYDM + Y HR+GR GR G
Sbjct: 702 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAG 761
Query: 393 TKGLAISMISS 403
G AIS +S+
Sbjct: 762 KTGCAISPVST 772
>7290853 [A] KOG0331 ATP-dependent RNA helicase
Length = 945
Score = 163 bits (413), Expect = 4e-40
Identities = 103/354 (29%), Positives = 191/354 (53%), Gaps = 24/354 (6%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL----QQLDPVQGEVSV-VV 126
GF P+ +Q P ++ G D++ A++G GKT ++L + Q ++GE + +V
Sbjct: 256 GFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALV 315
Query: 127 LCNARELAYQIRN---EYLRFSKYMPDVK-TAVFYGGTEYKNDIDLLSKKETVPHIIVAT 182
L RELA QI++ +Y K P+++ T +F G ++ DL E +I+AT
Sbjct: 316 LAPTRELAQQIQSVVRDYGHLCK--PEIRHTCIFGGSSKVPQARDLDRGVE----VIIAT 369
Query: 183 PGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
PGRL + +++ +L V+DE D++L+ + ++ I D+QV+M+SAT
Sbjct: 370 PGRLIDFLENRNTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVVMWSATWP 428
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLE------ 296
+E++ + FL + ++I + H ++Q E EK ++L LL+++
Sbjct: 429 KEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEISPIKNSG 488
Query: 297 --FNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
N++I+FV++ ++ ++ +++ A + A ++HG Q ER + K F+ + I ++T
Sbjct: 489 NNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNGKSNILIAT 548
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQ 408
DV RG+D+E + INYD PN ++ Y+HR+GR GR G A + + ++ +Q
Sbjct: 549 DVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 602
>ECU08g1080 [A] KOG0331 ATP-dependent RNA helicase
Length = 495
Score = 162 bits (411), Expect = 7e-40
Identities = 107/357 (29%), Positives = 182/357 (50%), Gaps = 12/357 (3%)
Query: 44 KGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGK 103
KG+ V F++ E+ ++++ GF P+ +Q P ++ G D++ A++G GK
Sbjct: 78 KGTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGK 137
Query: 104 TAVFVLSTL------QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFY 157
T F+L L Q L G + V+VL REL QI+ F M ++++ Y
Sbjct: 138 TLSFILPALVHAKDQQPLRRGDGPI-VLVLAPTRELVMQIKKVVDEFCG-MFNLRSTAVY 195
Query: 158 GGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDM 217
GG + I L + V ++ATPGRL L H LS V V+DE D++L+ +
Sbjct: 196 GGASSQPQIRALHEGAEV---VIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLD-MGF 251
Query: 218 RRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYI 277
++ I T ++Q +M+SAT +E+R + ++ +++ V +E T ++Q
Sbjct: 252 EPQLRKIIPKTNANRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVE 311
Query: 278 KLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERI 337
+ +EK KL +LD+ + ++VI+F ++L +LN S + A +HG Q R
Sbjct: 312 VCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRD 371
Query: 338 ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTK 394
F+ + I ++T+V GRG+D+ + L IN+D P + Y+HR+GR R TK
Sbjct: 372 KVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTK 428
>CE27030 [A] KOG0338 ATP-dependent RNA helicase
Length = 763
Score = 162 bits (411), Expect = 7e-40
Identities = 125/444 (28%), Positives = 215/444 (48%), Gaps = 42/444 (9%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDS---DKKGSYVGIHSTGFKDFLL 60
E E+D+ + E V K ++ + E++ S D K ++ F+ L
Sbjct: 97 EEEDDVQQLGGKETRDTVREKRKSGKSKKSQENEDFFSALIDGKSLDTSVN-VSFEQMNL 155
Query: 61 KPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQG 120
++ +A G+ P+ +QQ IP ++ G D+ A +G GKTA FVL L+++
Sbjct: 156 SRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIYRPK 215
Query: 121 EVS---VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH 177
S V+VL RELA Q+ + + S ++ ++ + GG + K L + P
Sbjct: 216 GASCTRVLVLVPTRELAIQVFQVFRKLSTFI-QLEVCLCAGGLDLKAQEAAL---RSGPD 271
Query: 178 IIVATPGRL-KALVRDKHIDLSHVKNF------------------------VIDECDKVL 212
++VATPGRL L +LS+++ F V+DE D++L
Sbjct: 272 VVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRML 331
Query: 213 EELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGL 272
EE R + ++ R +++Q ++FSAT+++EI + LQ P++IF+++ L L
Sbjct: 332 EEA-FRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALK-L 389
Query: 273 QQYYIKLN---EKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHG 329
+Q +I++ E ++ +A L+ I+FV++ + LL +
Sbjct: 390 RQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQS 449
Query: 330 HMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAG 389
+ Q +RI FK+ E + VSTD+ RG+DIE + IN +MP QY+HRVGR
Sbjct: 450 SLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTA 509
Query: 390 RFGTKGLAISMISSEDDEQVLAKI 413
R G G +IS++ ED+ ++L +I
Sbjct: 510 RAGKAGRSISLV-GEDERKLLKEI 532
>CE18785 [A] KOG0331 ATP-dependent RNA helicase
Length = 561
Score = 162 bits (410), Expect = 9e-40
Identities = 109/339 (32%), Positives = 176/339 (51%), Gaps = 15/339 (4%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL----QQLDPVQGE-VSVVVL 127
F+ P+ +Q + P ++ G D++ AK+G GKT F+L L +Q +GE +V+VL
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Query: 128 CNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLK 187
RELA Q++ + F + T +F G ++ DL E I+VATPGRL
Sbjct: 209 LPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDL----ERGVDIVVATPGRLL 264
Query: 188 ALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRP 247
+ + ++ V+DE D++L+ + ++ I D+Q +MFSAT +E+R
Sbjct: 265 DFLDNGTTNMKKCSYLVLDEADRMLD-MGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRA 323
Query: 248 ICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQ----VIIF 303
+ F ++ + V H + Q L E K KL +LL+ + NQ IIF
Sbjct: 324 LASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHI-MNQKECKTIIF 382
Query: 304 VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDI 363
V++ +A+ELT+ + +P + +HG Q ER + FK + I ++TDV RG+D+
Sbjct: 383 VETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDV 442
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
+ I INYD PN ++ Y+HR+GR GR KG A + +
Sbjct: 443 DDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFT 481
>At5g51280 [A] KOG0341 DEAD-box protein abstrakt
Length = 591
Score = 162 bits (409), Expect = 1e-39
Identities = 107/377 (28%), Positives = 193/377 (50%), Gaps = 27/377 (7%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL-- 112
FKD + + + G P+ +Q +P + G D++ A +G GKT VFVL +
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 113 ----QQLDPV---QGEVSVVVLCNARELAYQIRNEYLRFSKYM-----PDVKTAVFYGGT 160
+ + P+ +G + ++V C +RELA Q +F + P +++ + GG
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIV-CPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGI 266
Query: 161 EYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRD 220
+ ++ ++++ + HI+VATPGRLK ++ K + L + +DE D++++ L D
Sbjct: 267 DMRSQLEVVKRGV---HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD-LGFEDD 322
Query: 221 VQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQY-YIKL 279
++++F +Q ++FSAT+ +I+ R L P+ + V L +Q+ Y+K
Sbjct: 323 IREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVK- 381
Query: 280 NEKEKNRKLAQLLDDLEFNQ--VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERI 337
+ K+ LL+ L+ V+IF ++ +++ + L A+ +HG QE+R
Sbjct: 382 ----QEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRE 437
Query: 338 ARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397
+FK +K + V+TDV +G+D I INYDMP E + Y+HR+GR GR G G+A
Sbjct: 438 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 497
Query: 398 ISMISSEDDEQVLAKIQ 414
+ I+ E L ++
Sbjct: 498 TTFINKNQSETTLLDLK 514
>ECU02g0670 [A] KOG0335 ATP-dependent RNA helicase
Length = 503
Score = 161 bits (408), Expect = 2e-39
Identities = 112/367 (30%), Positives = 195/367 (52%), Gaps = 44/367 (11%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEH--PSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS 110
+ FKD L P L +A+ G E+ P+ +Q++ IP + G +++C+A +G+GKT F++
Sbjct: 99 SSFKD-LCSPLLIKAL---GKEYSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIP 154
Query: 111 TLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
+++ ++ + ++ REL QIR E SK + + V + +
Sbjct: 155 IIERHRQMK-KPQACIISPTRELCEQIRVEA---SKLVAGSRIRV----------VSIYG 200
Query: 171 KKETVPH-----IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIF 225
KK+ +P I+VATPGRL L+ K +DLS ++ FV+DE DK+L+ + +++I
Sbjct: 201 KKQDLPSYSGVDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADKLLD-MGFEIPIREIH 259
Query: 226 RATPRDKQVMMFSATLSQEIRPICRRFL-QNPLEIFVDDEAKLTLHGLQQYYIKLNEKEK 284
P++ Q +FSAT S ++ + FL ++ + I + E TL ++Q +++ K+K
Sbjct: 260 GFVPKNTQTCLFSATYSPKLTRMINYFLPEDKVSIEISSE---TLKNIRQEIVEVRNKKK 316
Query: 285 NRKLAQLLDDLEFN------------QVIIFVKSTVRANELTKLLNASNFPAITVHGHMK 332
L +L + N +V++FV+ E+ K+L S +++HG +
Sbjct: 317 --MLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKE 374
Query: 333 QEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
Q +R K F+ + V+T V RGIDI+ + L INYD+P + +Y+HR+GR GR G
Sbjct: 375 QADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREG 434
Query: 393 TKGLAIS 399
G +IS
Sbjct: 435 KSGKSIS 441
>Hs11321632 [A] KOG0339 ATP-dependent RNA helicase
Length = 709
Score = 161 bits (407), Expect = 2e-39
Identities = 112/360 (31%), Positives = 174/360 (48%), Gaps = 13/360 (3%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
+ F F +L I + P+ +Q +P ++ G D++ AK+G GKTA F+ L
Sbjct: 134 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 193
Query: 113 ------QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDI 166
++L+P G ++V+V C REL QI E RF K AV+ GG+ ++
Sbjct: 194 IHIMDQKELEPGDGPIAVIV-CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAK 252
Query: 167 DLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 226
L E I+V TPGRL V+ K +L V V DE D++ + + V+ I
Sbjct: 253 ALQEGAE----IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFD-MGFEYQVRSIAS 307
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEK-N 285
D+Q ++FSAT ++I + R L +P+ + D + Q I + K N
Sbjct: 308 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWN 367
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
+L++ V++FV A EL L +HG M Q ER FK+
Sbjct: 368 WLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKK 427
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
+ + V+TDV RG+DI I INYD+ + D + HR+GR GR G KG+A ++++ +D
Sbjct: 428 KDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKD 487
>SPCC1795.11 [A] KOG0335 ATP-dependent RNA helicase
Length = 636
Score = 160 bits (405), Expect = 3e-39
Identities = 109/353 (30%), Positives = 177/353 (49%), Gaps = 27/353 (7%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL---------------- 115
G+ P+ VQ+++IP G D++ A++G GKTA F+ L
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGM 247
Query: 116 --DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKE 173
P + + ++L REL QI E +F Y V+ YGG + + I + +
Sbjct: 248 GYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCAVYGGADIRAQIRQIDQG- 305
Query: 174 TVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPR 230
++ ATPGRL L+ I L+++K V+DE D++L+ E +R V+ +
Sbjct: 306 --CDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVE 363
Query: 231 DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQ 290
++Q +MFSAT ++I+ + R FL++ + + V T + Q + + + EK L
Sbjct: 364 ERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGS-TSENITQKVVHVEDSEKRSYLLD 422
Query: 291 LLDDLEFNQV-IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKR 349
+L L + +IFV++ A+ LT L SNFPA ++HG Q ER + F+
Sbjct: 423 ILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTS 482
Query: 350 ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
I V+T V RG+DI + INYD+P + D Y+HR+GR GR G G A++ +
Sbjct: 483 IMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535
>Hs5453840_1 [A] KOG0331 ATP-dependent RNA helicase
Length = 469
Score = 160 bits (405), Expect = 3e-39
Identities = 111/392 (28%), Positives = 198/392 (50%), Gaps = 30/392 (7%)
Query: 51 HSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS 110
H F +++ ++D F P+ +Q P ++ G D++ A++G GKT ++L
Sbjct: 95 HHANFPQYVMD-----VLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLP 149
Query: 111 TLQQLDPV----QGEVSV-VVLCNARELAYQIR---NEYLRFSKYMPDVKTAVFYGGTEY 162
+ ++ +G+ + +VL RELA Q++ ++Y + S+ +K+ YGG
Sbjct: 150 AIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR----LKSTCIYGGAPK 205
Query: 163 KNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQ 222
I L E I +ATPGRL + +L V+DE D++L+ + ++
Sbjct: 206 GPQIRDL---ERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLD-MGFEPQIR 261
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK 282
I D+Q +M+SAT +E+R + FL++ +I V + H + Q E
Sbjct: 262 KIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES 321
Query: 283 EKNRKLAQLLDDL---EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIAR 339
EK+ KL QL++++ + N+ IIFV++ R ++LT+ + +PA+ +HG Q ER
Sbjct: 322 EKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWV 381
Query: 340 YKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAIS 399
F+ + I ++TDV RG+D+E + INYD PN ++ Y+HR+GR R KG A +
Sbjct: 382 LNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYT 441
Query: 400 MISSEDDEQVLAKIQERFDVKITEFPEEGVDP 431
+ + +Q R +K+ E + ++P
Sbjct: 442 FFTPGNLKQA------RELIKVLEEANQAINP 467
>Hs13775232 [A] KOG0331 ATP-dependent RNA helicase
Length = 580
Score = 160 bits (404), Expect = 5e-39
Identities = 100/333 (30%), Positives = 172/333 (51%), Gaps = 8/333 (2%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+ L L+ + G+E P+ +Q IP + G D+L A +G GKTA F+L + +
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
S ++L RELA QI + +P +KT + GG + L +
Sbjct: 265 ALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK 324
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
V I+ATPGRL +++ ++L VK V+DE D +L+ + ++ V DI P D Q
Sbjct: 325 V---IIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLK-MGFQQQVLDILENIPNDCQT 380
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD 294
++ SAT+ I + + L NP+ I + E L ++Q + + + K +KL ++L+D
Sbjct: 381 ILVSATIPTSIEQLASQLLHNPVRI-ITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439
Query: 295 LEFNQ--VIIFVKSTVRANELTKLLNA-SNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
+ + V++FV + A+ L++ + + +I++H Q ER K E + +
Sbjct: 440 KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVV 499
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHR 384
VST V GRG+D+ + L +N+DMP+ D+Y+H+
Sbjct: 500 VSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQ 532
>Hs22063157 [A] KOG0329 ATP-dependent RNA helicase
Length = 186
Score = 159 bits (403), Expect = 6e-39
Identities = 85/189 (44%), Positives = 115/189 (59%), Gaps = 42/189 (22%)
Query: 239 ATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFN 298
ATLS+EIRP+C +F+Q+P+EIFVD+E KL LHGLQQYY+KL + +KN K LL+ LEFN
Sbjct: 29 ATLSKEIRPVCHKFMQDPVEIFVDNEMKLMLHGLQQYYMKLKDNQKNWKRYDLLNVLEFN 88
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
QV+IF+KS R +LL
Sbjct: 89 QVMIFLKSVQRRIASAQLL----------------------------------------- 107
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
G+DIER+N+A NYDMP ++D YLH V RA RFGTK LAI+ +S E+D ++L +Q+RF+
Sbjct: 108 -GMDIERVNIAFNYDMPEDSDTYLHWVARASRFGTKSLAITFVSDENDAKILNDMQDRFE 166
Query: 419 VKITEFPEE 427
V ++ P+E
Sbjct: 167 VNRSDLPDE 175
>Hs10346129 [A] KOG0336 ATP-dependent RNA helicase
Length = 648
Score = 159 bits (403), Expect = 6e-39
Identities = 107/375 (28%), Positives = 184/375 (48%), Gaps = 15/375 (4%)
Query: 58 FLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS-----TL 112
F PE+ I GF+ P+ +Q P + G D++ A++G GKT +++ L
Sbjct: 247 FQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVL 306
Query: 113 Q-QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSK 171
Q L + ++VL RELA Q+ E ++S +++ YGG I+ L K
Sbjct: 307 QPSLKGQRNRPGMLVLTPTRELALQVEGECCKYS--YKGLRSVCVYGGGNRDEQIEELKK 364
Query: 172 KETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
II+ATPGRL L ++L ++ V+DE DK+L+ + + I D
Sbjct: 365 GVD---IIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLD-MGFEPQIMKILLDVRPD 420
Query: 232 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQL 291
+Q +M SAT + + + +L+ P+ ++V + + ++Q I E+EK +
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTF 480
Query: 292 LDDLEF-NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRI 350
L + ++VI+FV A+ L+ L N ++HG +Q +R + FK + RI
Sbjct: 481 LQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED--DEQ 408
++TD+ RG+D+ + N+D P ++Y+HR+GR GR G G++I+ ++ D
Sbjct: 541 LIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVAS 600
Query: 409 VLAKIQERFDVKITE 423
L I ER + I E
Sbjct: 601 ELINILERANQSIPE 615
>At1g71370 [A] KOG0345 ATP-dependent RNA helicase
Length = 558
Score = 158 bits (400), Expect = 1e-38
Identities = 106/366 (28%), Positives = 188/366 (50%), Gaps = 19/366 (5%)
Query: 60 LKPELSRAIIDC----GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL 115
LKP LS II+ GFE + VQ TIP DV+ A +G GKT F+L ++ +
Sbjct: 19 LKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 78
Query: 116 ------DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
P +V V++ REL+ QI F +P+V + + GG E + D++ L
Sbjct: 79 RRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTL 138
Query: 170 SKKETVPHIIVATPGRLKALV-RDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
+E ++++ TPGRL ++ R + +D +++ ++DE D++L+ + ++ V I
Sbjct: 139 --EEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRL 195
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL-TLHGLQQYYIKLNEKEKNRK 287
P+ ++ +FSAT +Q + + + L+N +E+ E+K T GL Y+K +K+ +
Sbjct: 196 PKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQ 255
Query: 288 LAQLLDDLEFNQVIIFVKSTVRANE----LTKLLNASNFPAITVHGHMKQEERIARYKAF 343
L LL + + ++++F + + L+K+ + + HG M Q+ R +F
Sbjct: 256 LVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASF 315
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
E + + TDV RG+DI I+ + YD P + D ++HRVGR R +G AI +
Sbjct: 316 TEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMP 375
Query: 404 EDDEQV 409
++ + V
Sbjct: 376 KETDYV 381
>YGL078c [A] KOG0331 ATP-dependent RNA helicase
Length = 523
Score = 158 bits (399), Expect = 2e-38
Identities = 101/342 (29%), Positives = 175/342 (50%), Gaps = 15/342 (4%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL--DPVQGEVSVVVLCNA 130
F P+ +Q P + G DV+ A++G GKT F + + L D + + V+V+
Sbjct: 132 FPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPT 191
Query: 131 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALV 190
RELA QI + + + + ++ YGG L K + ++VATPGRL L+
Sbjct: 192 RELASQIYDNLIVLTDKV-GMQCCCVYGGVPKDEQRIQLKKSQ----VVVATPGRLLDLL 246
Query: 191 RDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDK-QVMMFSATLSQEIRPIC 249
++ +DLS V V+DE D++LE+ D+++I R T K Q +MF+AT +E+R +
Sbjct: 247 QEGSVDLSQVNYLVLDEADRMLEK-GFEEDIKNIIRETDASKRQTLMFTATWPKEVRELA 305
Query: 250 RRFLQNPLEIFVDDEAKLTLHG-LQQYYIKLNEKEKNRKLAQLLDDLEFN-----QVIIF 303
F+ NP+++ + + +LT + + Q ++ + K RKL +LL +V+IF
Sbjct: 306 STFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIF 365
Query: 304 VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDI 363
A + + L + + +HG + Q++R FK + + ++TDV RG+DI
Sbjct: 366 ALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
+ IN P + Y+HR+GR GR G G A ++ + ++
Sbjct: 426 PNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQE 467
>YMR290c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 505
Score = 157 bits (398), Expect = 2e-38
Identities = 123/427 (28%), Positives = 205/427 (47%), Gaps = 26/427 (6%)
Query: 13 SDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCG 72
S++ +E VD K+T E + +K F++ L +AI G
Sbjct: 12 SESTEEPVVDEKSTSKQNNAAPEGEQTTCVEK----------FEELKLSQPTLKAIEKMG 61
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGE----VSVVVLC 128
F + VQ TIP + G DVL AK+G GKT F++ ++ L ++ + ++V+
Sbjct: 62 FTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVIT 121
Query: 129 NARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL-K 187
RELA QI ++ + GG + + + L K ++++ATPGRL
Sbjct: 122 PTRELALQIFGVARELMEFHSQT-FGIVIGGANRRQEAEKLMKGV---NMLIATPGRLLD 177
Query: 188 ALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPR-DKQVMMFSATLSQEIR 246
L K ++K +IDE D++LE + +++ I + P D+Q M+FSAT + ++
Sbjct: 178 HLQNTKGFVFKNLKALIIDEADRILE-IGFEDEMRQIIKILPNEDRQSMLFSATQTTKVE 236
Query: 247 PICRRFLQ-NPLEIFVDDEA-KLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFV 304
+ R L+ PL I V E T GL+Q Y+ + ++ L L + ++I+F+
Sbjct: 237 DLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFL 296
Query: 305 KSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIE 364
S +LLN + P + +HG KQ++R + F E+ I + TDV RG+DI
Sbjct: 297 SSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIP 356
Query: 365 RINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKIT-- 422
++ I +D P++ Y+HRVGR R GTKG S++ +E + + V +
Sbjct: 357 AVDWIIQFDPPDDPRDYIHRVGRTAR-GTKGKGKSLMFLTPNELGFLRYLKASKVPLNEY 415
Query: 423 EFPEEGV 429
EFPE +
Sbjct: 416 EFPENKI 422
>ECU02g1520 [J] KOG0328 Predicted ATP-dependent RNA helicase FAL1 involved in
rRNA maturation DEAD-box superfamily
Length = 425
Score = 157 bits (398), Expect = 2e-38
Identities = 116/398 (29%), Positives = 192/398 (48%), Gaps = 23/398 (5%)
Query: 19 VQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSE 78
++ D A E +G+ D +K V H F D L EL +AI + GFE PS
Sbjct: 21 IKHDTTAIETGLDGSISGVGTDRGQK-LLVAEH---FSDMGLSDELLKAIYNQGFEKPSL 76
Query: 79 VQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIR 138
+Q+ IP + G +V+ Q+KSG GKT + L + V+V+ REL+ Q+
Sbjct: 77 IQKSAIPHILRGHNVVVQSKSGTGKTIAYTCGVLGNTK-IGERTQVMVVTPTRELSTQVT 135
Query: 139 NEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLS 198
S + VF + KN I +E ++V +PG + L+ ++
Sbjct: 136 EV---ISGLAGPLGIKVF---SALKNKITDSIGEE----VVVGSPGTILKLMELGKLNYK 185
Query: 199 HVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLE 258
VK V+DE D +L++ M I + Q++ FSAT S++++ + + ++
Sbjct: 186 GVKMIVLDEADILLDKDMMGTQTFRILKLIS-GAQMIFFSATFSEQVKQTIEFYAPDAVK 244
Query: 259 IFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN 318
++ + K ++ +YI+ + K R L L + L +Q+IIFV + N L K L
Sbjct: 245 MYEERNGKPD--EIKLFYIEAEGENKRRALKSLYEYLSISQMIIFVSTKATVNYLRKKLE 302
Query: 319 ASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMP--- 375
+HG ++ EER F+ + +I ++TDVF RG+DI ++NL +NYD+P
Sbjct: 303 DDLHSVSCLHGDLEIEEREKAVGDFRSSKSKILLTTDVFSRGMDIPQVNLIVNYDLPIYR 362
Query: 376 --NEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
Y+HR+GR+GRFG G + + E+ E L+
Sbjct: 363 GVASTQTYIHRIGRSGRFGRTGFVVDFVRDEELEAYLS 400
>CE26853 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 544
Score = 157 bits (397), Expect = 3e-38
Identities = 118/421 (28%), Positives = 212/421 (50%), Gaps = 28/421 (6%)
Query: 14 DNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGF 73
++E+EV+ + K E + E++ + K ++ + + L +A+ GF
Sbjct: 38 EDEEEVEEEQKH---QTEESSETKVSEFLTKTTFASLEGK------VNANLLKAVQGLGF 88
Query: 74 EHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGE----VSVVVLCN 129
+E+Q +I + G DVL AK+G GKT F+L ++ L + + V+++
Sbjct: 89 TTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSP 148
Query: 130 ARELA---YQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
REL+ Y + +E L S ++ + GG+ + D L+K + I+VATPGRL
Sbjct: 149 TRELSMQTYGVLSELLEGS----NLTYGLVMGGSNRSAEKDKLAKGVS---ILVATPGRL 201
Query: 187 -KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
L + + ++K +IDE D++L+ + ++Q + R P+ +Q M+FSAT S ++
Sbjct: 202 LDHLQNTDNFLVRNMKCLIIDEADRILD-IGFEIEMQQVLRHLPKQRQSMLFSATHSPKV 260
Query: 246 RPICRRFLQ-NPLEIFVDDEAK-LTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIF 303
+ + L NP+ + V ++A+ T+ GLQQ YI ++ L L + +V++F
Sbjct: 261 DELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVF 320
Query: 304 VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDI 363
S +LLN + P +++HG KQ++R + F + E I + TDV RG+DI
Sbjct: 321 FSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDI 380
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITE 423
++ + YD +E +Y+HRVGR R GT G +++ +E + + V + E
Sbjct: 381 PAVDWIVQYDPTDEPREYIHRVGRTAR-GTNGSGKALLVLRPEELGFLRYLKAAKVTLNE 439
Query: 424 F 424
F
Sbjct: 440 F 440
>At1g20920 [A] KOG0334 RNA helicase
Length = 1166
Score = 157 bits (396), Expect = 4e-38
Identities = 104/364 (28%), Positives = 192/364 (52%), Gaps = 16/364 (4%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD---PVQ-GEVSV-VVL 127
+E P +Q +P + G D + AK+G GKT FVL L+ + PV+ G+ + +V+
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 128 CNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLK 187
REL QI ++ +FSK + ++ YGG+ I L + I+V TPGR+
Sbjct: 609 APTRELVQQIHSDIRKFSKPL-GIRCVPVYGGSGVAQQISELKRGT---EIVVCTPGRMI 664
Query: 188 ALV---RDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQE 244
++ K +L V V+DE D++ + + + I + ++Q ++FSAT ++
Sbjct: 665 DILCTSSGKITNLRRVTFLVMDEADRMFD-MGFEPQITRIIQNIRPERQTVLFSATFPRQ 723
Query: 245 IRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVIIF 303
+ + R+ L P+EI V + + Q ++ E ++ +L +LL + E ++++F
Sbjct: 724 VETLARKVLNKPVEIQVGGRSVVNKDITQLVEVR-PESDRFLRLLELLGEWSEKGKILVF 782
Query: 304 VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDI 363
V+S + + L + + S++P +++HG Q +R + FK + ++T V RG+D+
Sbjct: 783 VQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDV 842
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITE 423
+ + L +N+D PN + Y+HRVGR GR G KG A++ I SEDD + + + ++
Sbjct: 843 KELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFI-SEDDAKYAPDLVKALELSEQP 901
Query: 424 FPEE 427
P++
Sbjct: 902 VPDD 905
>CE25231 [A] KOG0343 RNA Helicase
Length = 732
Score = 156 bits (394), Expect = 7e-38
Identities = 113/411 (27%), Positives = 202/411 (48%), Gaps = 20/411 (4%)
Query: 22 DNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQ 81
D K E E + ++ KK S + F+DF L + D + P+E+Q+
Sbjct: 48 DLKGQEETMLDEVEQKYQEMLKKSSRTFLR---FEDFPLSWRTLEGLKDNDYTKPTEIQR 104
Query: 82 HTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL-----DPVQGEVSVVVLCNARELAYQ 136
TI S+ G+DV+ AK+G GKT V+ L+ L P G + +++ RELA Q
Sbjct: 105 DTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYG-LGALIISPTRELALQ 163
Query: 137 IRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL-KALVRDKHI 195
+ + + GG+ D+ + + +IIV TPGRL + + + +
Sbjct: 164 TFSTINAVGAHH-GFSCGLVIGGS----DVAFERNRISGINIIVCTPGRLLQHMDENAQM 218
Query: 196 DLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQN 255
++ V+DE D++L+ + + + I P ++Q ++FSAT ++ ++ +CR +
Sbjct: 219 SCDSLQVLVLDEADRMLD-MGFSKQLNSIINNLPAERQTLLFSATQTRNVKDLCRVCTND 277
Query: 256 PLEIFVDDEAKL-TLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELT 314
P+ + V + A T L+Q Y+ + E+ K L ++ + ++FV S +A LT
Sbjct: 278 PVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIEAHRKKKSLVFVSSCKQARFLT 337
Query: 315 KLLNA--SNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINY 372
+ + P + + G M Q++RI + F E + + ++TDV RG+D E I+ I
Sbjct: 338 EAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAVLIATDVASRGLDFEHIDWVIQV 397
Query: 373 DMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITE 423
D P + D Y+HRVGR+ R G ++ M+S +E ++ K+ E+ + I E
Sbjct: 398 DCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMIGKL-EKHSIPIEE 447
>SPBC17D1.06 [A] KOG0331 ATP-dependent RNA helicase
Length = 578
Score = 155 bits (393), Expect = 9e-38
Identities = 129/443 (29%), Positives = 207/443 (46%), Gaps = 49/443 (11%)
Query: 5 AEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAK---------------DSDKKGSYVG 49
A++D + D ++ + +K E + E N E AK D + Y+
Sbjct: 89 ADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAKIAQPAIGSANASNHNDEEAYDRYIK 148
Query: 50 IHSTGFKDFL----LKPELSRAIIDCG---------FEHPSEVQQHTIPQSIHGTDVLCQ 96
H+ F D L P L +D ++ P+ +Q T P + G DV+
Sbjct: 149 KHNISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGI 208
Query: 97 AKSGLGKTAVFVLSTLQQLDPVQGEVSV---VVLCNARELAYQIRNEYLRFSKYMPDVKT 153
A++G GKT F + LQ L+ + SV +V+ RELA Q E L ++K
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTY-ENLNSLIQGTNLKA 267
Query: 154 AVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE 213
V YGG K++ +K +V I+ TPGRL L+ D ID S V V+DE D++L+
Sbjct: 268 VVVYGGAP-KSEQARAAKNASV---IIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLD 323
Query: 214 ELDMRRDVQDIFRATPR-----DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLT 268
+D+++I TP +Q + FSAT + +R + FL++P++I + +
Sbjct: 324 T-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAA 382
Query: 269 LHGLQQYYIKLNE-KEKNRKLAQLL-----DDLEFNQVIIFVKSTVRANELTKLLNASNF 322
+ Q L++ + K R L LL + ++++IFV A + L A +
Sbjct: 383 SQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTL-ARKY 441
Query: 323 PAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYL 382
+ +HG M Q R+ FK + + V+TDV RG+DI ++ L IN P + Y+
Sbjct: 442 NVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYV 501
Query: 383 HRVGRAGRFGTKGLAISMISSED 405
HR+GR GR TKG AI+ + +D
Sbjct: 502 HRIGRTGRANTKGTAITFFTPQD 524
>Hs4758138 [A] KOG0331 ATP-dependent RNA helicase
Length = 614
Score = 155 bits (393), Expect = 9e-38
Identities = 103/348 (29%), Positives = 180/348 (51%), Gaps = 19/348 (5%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPV----QGEVSV-VVL 127
F P+ +Q P ++ G D++ A++G GKT ++L + ++ +G+ + +VL
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 173
Query: 128 CNARELAYQIRN---EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPG 184
RELA Q++ EY R + +K+ YGG I L E I +ATPG
Sbjct: 174 APTRELAQQVQQVAAEYCRACR----LKSTCIYGGAPKGPQIRDL---ERGVEICIATPG 226
Query: 185 RLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQE 244
RL + +L V+DE D++L+ + ++ I D+Q +M+SAT +E
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKE 285
Query: 245 IRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL---EFNQVI 301
+R + FL++ + I + H + Q ++ EK+ KL +L++++ + N+ I
Sbjct: 286 VRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 345
Query: 302 IFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGI 361
+FV++ R +ELT+ + +PA+ +HG Q+ER FK + I ++TDV RG+
Sbjct: 346 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 405
Query: 362 DIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
D+E + INYD PN ++ Y+HR+GR R G A + + + +QV
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
>CE23832 [A] KOG0341 DEAD-box protein abstrakt
Length = 630
Score = 155 bits (393), Expect = 9e-38
Identities = 108/373 (28%), Positives = 195/373 (51%), Gaps = 29/373 (7%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-------QLDPVQGEVSV 124
G P+ +Q IP ++ G D++ A +G GKT FVL + +L ++ E
Sbjct: 209 GIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPF 268
Query: 125 -VVLCNARELAYQIRNEYLRF-----SKYMPDVKTAVFYGGT---EYKNDIDLLSKKETV 175
+++ +RELA QI + + +P+++ + GG E D+ ++ +
Sbjct: 269 GLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDV-----RDGI 323
Query: 176 PHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM 235
HI+VATPGRL ++ K I+L + V+DE D++L+ + +++ IF +Q +
Sbjct: 324 -HIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLD-MGFEDEIKSIFYFFKAQRQTL 381
Query: 236 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL 295
+FSAT+ ++I+ + L P+ + V +L+ LQ+ +E KL ++L+ L
Sbjct: 382 LFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSEN----KLVRVLECL 437
Query: 296 EFN--QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVS 353
+ +V+IF + V + + + L ++HG Q +R A +AF++ EK + V+
Sbjct: 438 QKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVA 497
Query: 354 TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKI 413
TDV +G+D + I IN+DMP + + Y+HR+GR GR G KGLA + I+ + + VL+ +
Sbjct: 498 TDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDL 557
Query: 414 QERFDVKITEFPE 426
++ E PE
Sbjct: 558 KQLLAEAGQELPE 570
>CE28031 [A] KOG0334 RNA helicase
Length = 747
Score = 155 bits (391), Expect = 1e-37
Identities = 108/357 (30%), Positives = 179/357 (49%), Gaps = 18/357 (5%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ------QLDPVQGEVSVVV 126
+ P+ +Q IP + G DV+ AK+G GKT F+L + +L+ G ++V+
Sbjct: 324 YSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI- 382
Query: 127 LCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
L RELA Q E +F+K + +K A YGG I L + I+V TPGR+
Sbjct: 383 LAPTRELAMQTYKEANKFAKPL-GLKVACTYGGVGISEQIADLKRGA---EIVVCTPGRM 438
Query: 187 ---KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQ 243
A K +L V V+DE D++ ++ + + DKQ ++FSAT +
Sbjct: 439 IDVLAANSGKVTNLRRVTYLVLDEADRMFDK-GFEPQIMKVVNNIRPDKQTVLFSATFPR 497
Query: 244 EIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVII 302
+ + R+ L P+EI V ++ + + Q + E +K KL +LL E I+
Sbjct: 498 HMEALARKVLDKPVEILVGGKS-VVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIV 556
Query: 303 FVKSTVRANELTKLLNASNFPAIT-VHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGI 361
FV +A+++ L + + ++ +HG + Q +R + FK ++ V+T V RG+
Sbjct: 557 FVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGL 616
Query: 362 DIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
D++ + L +NYD PN + Y+HRVGR GR G KG A + + E E++ +I F+
Sbjct: 617 DVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFE 673
>CE27427 [A] KOG0334 RNA helicase
Length = 970
Score = 155 bits (391), Expect = 1e-37
Identities = 108/357 (30%), Positives = 179/357 (49%), Gaps = 18/357 (5%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ------QLDPVQGEVSVVV 126
+ P+ +Q IP + G DV+ AK+G GKT F+L + +L+ G ++V+
Sbjct: 324 YSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVI- 382
Query: 127 LCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
L RELA Q E +F+K + +K A YGG I L + I+V TPGR+
Sbjct: 383 LAPTRELAMQTYKEANKFAKPL-GLKVACTYGGVGISEQIADLKRGA---EIVVCTPGRM 438
Query: 187 ---KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQ 243
A K +L V V+DE D++ ++ + + DKQ ++FSAT +
Sbjct: 439 IDVLAANSGKVTNLRRVTYLVLDEADRMFDK-GFEPQIMKVVNNIRPDKQTVLFSATFPR 497
Query: 244 EIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVII 302
+ + R+ L P+EI V ++ + + Q + E +K KL +LL E I+
Sbjct: 498 HMEALARKVLDKPVEILVGGKS-VVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIV 556
Query: 303 FVKSTVRANELTKLLNASNFPAIT-VHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGI 361
FV +A+++ L + + ++ +HG + Q +R + FK ++ V+T V RG+
Sbjct: 557 FVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGL 616
Query: 362 DIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFD 418
D++ + L +NYD PN + Y+HRVGR GR G KG A + + E E++ +I F+
Sbjct: 617 DVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFE 673
>7293369 [A] KOG0343 RNA Helicase
Length = 805
Score = 155 bits (391), Expect = 1e-37
Identities = 111/422 (26%), Positives = 208/422 (48%), Gaps = 33/422 (7%)
Query: 27 EVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFL---LKPELSRAIIDCGFEHPSEVQQHT 83
E+N ++A+ D K Y I +T K F L + +A+ + F HP++VQ+ +
Sbjct: 43 EINKSRLAATEAEIQDLKTKYAEIDATAIKKFAQFPLSKKTQKALAESKFVHPTQVQRDS 102
Query: 84 IPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGE----VSVVVLCNARELAYQIRN 139
I ++ G DVL A +G GKT F++ L+ L + V +++ RELAYQI
Sbjct: 103 IGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTDGVGAIIISPTRELAYQIFE 162
Query: 140 EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHI-DLS 198
+ K+ D + GG K + + + +I++ TPGRL + + + + S
Sbjct: 163 TLKKVGKHH-DFSAGLIIGGKNLKFERTRMDQC----NILICTPGRLLQHMDENPLFNTS 217
Query: 199 HVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLE 258
++ V+DE D+ L+ + ++ + I P +Q ++FSAT + ++ + R L++P+
Sbjct: 218 TMEMLVLDEADRCLD-MGFQKTLNSIIENFPPVRQTLLFSATQTNTVQDLARLNLKDPVY 276
Query: 259 IF----------------VDDEAKLTLHGL-QQYYIKLNEKEKNRKLAQLLDDLEFNQVI 301
+ + A L + L QQ Y+ LN ++K L + + ++I
Sbjct: 277 VGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLEDKITMLWSFIKNHLKQKII 336
Query: 302 IFVKSTVRANELTKLLNA--SNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGR 359
+FV S +A L ++ P + ++G + Q+ RIA Y+ F + STDV R
Sbjct: 337 VFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMFSTDVASR 396
Query: 360 GIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDV 419
G+D +N + D P + QY+HR GR+ R T+G + +++ ++E +++ ++E+ ++
Sbjct: 397 GLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQLNI 456
Query: 420 KI 421
I
Sbjct: 457 DI 458
>YHR169w [A] KOG0340 ATP-dependent RNA helicase
Length = 431
Score = 154 bits (390), Expect = 2e-37
Identities = 120/383 (31%), Positives = 185/383 (47%), Gaps = 21/383 (5%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
FK L L+ ++ P+ +Q+ IP+ + G D + AK+G GKT F L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+ VVL RELA QI ++ M +++ +V GG L +K
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSM-NIRVSVIVGGESIVQQALDLQRK-- 120
Query: 175 VPHIIVATPGRLKALVRDKHID----LSHVKNFVIDECDKVLEELDMRRDVQDIFRATPR 230
PH I+ATPGRL + D L K V+DE D +L I P+
Sbjct: 121 -PHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK 179
Query: 231 DK-QVMMFSATLSQEIRPICRRFLQN---PLEIF----VDDEAKLTLHGLQQYYIKLNEK 282
DK Q ++F+AT++ +++ + +Q PL + VD+ A + L+ YI + E
Sbjct: 180 DKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPST--LKIEYILVPEH 237
Query: 283 EKNRKLAQLL--DDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARY 340
K L QLL ++ E IIFV T+ A L + L ++H M Q+ER
Sbjct: 238 VKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSL 297
Query: 341 KAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISM 400
F+ RI ++TDV RG+DI + L +NYD+P++ D ++HR GR R G G AIS
Sbjct: 298 HRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISF 357
Query: 401 ISSEDDEQVLAKIQERFDVKITE 423
++ D ++ A I++R + K+TE
Sbjct: 358 VTQRDVSRIQA-IEDRINKKMTE 379
>At1g77050 [A] KOG0337 ATP-dependent RNA helicase
Length = 513
Score = 154 bits (390), Expect = 2e-37
Identities = 111/379 (29%), Positives = 186/379 (48%), Gaps = 21/379 (5%)
Query: 35 ESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVL 94
E K+ KK G GF+ L P + AI G++ P+ +Q+ T+P + G DV+
Sbjct: 14 ELHRKEKQKKKGKSG----GFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVV 69
Query: 95 CQAKSGLGKTAVFVLSTLQQLDP--VQGEVSVVVLCNARELAYQIRNEYLRFSKYM---P 149
A++G GKTA F++ L++L QG V ++L R+LA Q L+F+K +
Sbjct: 70 AMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQT----LKFTKELGKFT 125
Query: 150 DVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRD-KHIDLSHVKNFVIDEC 208
D++ ++ GG ++ + L+K P +I+ATPGRL L+ + + L V+ V DE
Sbjct: 126 DLRVSLLVGGDSMEDQFEELTKG---PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEA 182
Query: 209 DKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLT 268
D + + + I ++Q ++FSATL + + L+ P + +D E K++
Sbjct: 183 DSLFG-MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKIS 241
Query: 269 LHGLQQYYIKLNEKEKNRKLAQLLDD--LEFNQVIIFVKSTVRANELTKLLNASNFPAIT 326
L+ ++ + +EK L L+ + Q +IFV + + L N
Sbjct: 242 -PDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSV 300
Query: 327 VHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVG 386
+G M Q+ R F+ + + + TD+ RGIDI ++ IN+D P ++HRVG
Sbjct: 301 CYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVG 360
Query: 387 RAGRFGTKGLAISMISSED 405
RA R G G A S ++ ED
Sbjct: 361 RAARAGRTGCAYSFVTPED 379
>Hs13514813 [A] KOG0335 ATP-dependent RNA helicase
Length = 662
Score = 154 bits (389), Expect = 2e-37
Identities = 112/355 (31%), Positives = 172/355 (47%), Gaps = 27/355 (7%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL-DPVQGEVS-------- 123
+ P+ VQ+H IP D++ A++G GKTA F+L L Q+ GE
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 259
Query: 124 ---------VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+VL RELA QI E +FS Y V+ V YGG + I L E
Sbjct: 260 YGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVVYGGADIGQQIRDL---ER 315
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRD 231
H++VATPGRL ++ I L K V+DE D++L+ E +RR V+
Sbjct: 316 GCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV 375
Query: 232 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQL 291
+ MMFSAT +EI+ + R FL + + V T + Q + + E +K L L
Sbjct: 376 RHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGS-TSENITQKVVWVEESDKRSFLLDL 434
Query: 292 LDDLEFNQV-IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRI 350
L+ + + ++FV++ A+ L L + ++HG Q +R F+ + I
Sbjct: 435 LNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 494
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
V+T V RG+DI + IN+D+P++ ++Y+HR+GR GR G GLA S + +
Sbjct: 495 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 549
>At5g65900 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 633
Score = 154 bits (389), Expect = 2e-37
Identities = 120/433 (27%), Positives = 211/433 (48%), Gaps = 15/433 (3%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTG-FKDFLLKP 62
E +E + E + +++ + K TE +E E + K+ +KK I + F+ L
Sbjct: 105 EEDEVIAEEEEPKKKKKKQRKDTEAKSEEE-EVEDKEEEKKLEETSIMTNKTFESLSLSD 163
Query: 63 ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ--- 119
++I + GF +++Q IP + G DVL A++G GKT F++ ++ L V+
Sbjct: 164 NTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTP 223
Query: 120 -GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHI 178
V+V+C RELA Q KY V GG + K + ++L+K ++
Sbjct: 224 RNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVI-GGEKRKTEAEILAKGV---NL 279
Query: 179 IVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMF 237
+VATPGRL L ++K V+DE D++LE+ + D++ I P+ +Q +F
Sbjct: 280 LVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQ-NFEEDLKKILNLLPKTRQTSLF 338
Query: 238 SATLSQEIRPICRRFLQNPLEIFVDDEAK-LTLHGLQQYYIKLNEKEKNRKLAQLLDDLE 296
SAT S ++ + R L +P+ I VD+ K +T GL+Q Y + + L L +
Sbjct: 339 SATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQ 398
Query: 297 FNQVIIFVKSTVRANEL-TKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTD 355
+ I+ ST ++ + +L F + + G + Q +R + F + E I + T+
Sbjct: 399 GKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTN 458
Query: 356 VFGRGIDIERINLAINYDMPNEADQYLHRVGRAGR-FGTKGLAISMISSEDDEQVLAKIQ 414
V RG+D ++ + YD P+ Y+HRVGR R G KG A+ +++ ++ + +
Sbjct: 459 VAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYLKA 518
Query: 415 ERFDVKITEFPEE 427
+ V+ EF E+
Sbjct: 519 AKIPVEEHEFEEK 531
>At2g47330 [A] KOG0339 ATP-dependent RNA helicase
Length = 748
Score = 153 bits (387), Expect = 4e-37
Identities = 102/358 (28%), Positives = 183/358 (50%), Gaps = 12/358 (3%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL-- 112
F+D ++ AI +E P+ +Q +P + G DV+ AK+G GKTA FVL +
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 113 --QQLDPVQGEVSVVVLCN-ARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
Q + + E + V+C RELA+QI E +FSK +AV+ G ++++ +L
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349
Query: 170 SKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
+ E I+VATPGRL +++ K + + V+DE D++ + L V+ I
Sbjct: 350 AGCE----IVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD-LGFEPQVRSIVGQIR 404
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA 289
D+Q ++FSAT+ ++ + R L +P+ + V + Q + ++ EK L
Sbjct: 405 PDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLL 464
Query: 290 QLLDDL-EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEK 348
+ L + + V++F +E+ L ++F +HG Q R+ + FK
Sbjct: 465 EKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVH 524
Query: 349 RICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTK-GLAISMISSED 405
+ ++TDV RG+DI+ + +NYD+ + D ++HR+GR GR G + G+A ++++ +
Sbjct: 525 HVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQRE 582
>SPCC63.11 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 662
Score = 153 bits (386), Expect = 6e-37
Identities = 107/376 (28%), Positives = 184/376 (48%), Gaps = 33/376 (8%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS---TLQQLD 116
L E+ + + ++ PS +Q+ IP + D++ A++G GKTA F++ + +L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 117 PVQGEVS-----VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSK 171
P+ VVL RELA QI+ E +F++ + + GG ++ +S+
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 172 KETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
HI+VATPGRL + + LS V+DE D++L+ + DV I + P
Sbjct: 375 GA---HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLPSS 430
Query: 232 -------------------KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGL 272
+Q +MFSATL + + + +L P+ + + + +
Sbjct: 431 NASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVE 490
Query: 273 QQYYIKLNEKEKNRKLAQLLDDLEFNQ-VIIFVKSTVRANELTKLLNASNFPAITVHGHM 331
Q+ + ++ +K R++ ++L+ F+ +IIFV + K LNA + A+T+HG
Sbjct: 491 QRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSK 550
Query: 332 KQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRF 391
QE+R + + I V+TD+ GRGIDI ++L +NY+M + Y HR+GR GR
Sbjct: 551 SQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRA 610
Query: 392 GTKGLAISMISSEDDE 407
G G AI+ + ED +
Sbjct: 611 GKSGTAITFLGPEDTD 626
>Hs13514809 [A] KOG0335 ATP-dependent RNA helicase
Length = 660
Score = 152 bits (385), Expect = 7e-37
Identities = 116/383 (30%), Positives = 182/383 (47%), Gaps = 27/383 (7%)
Query: 45 GSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKT 104
GS H F D + + I + P+ VQ+H IP D++ A++G GKT
Sbjct: 170 GSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKT 229
Query: 105 AVFVLSTLQQL---DPVQGEVSV---------------VVLCNARELAYQIRNEYLRFSK 146
A F+L L Q+ P + +V +VL RELA QI E +FS
Sbjct: 230 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS- 288
Query: 147 YMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVID 206
Y V+ V YGG + I L E H++VATPGRL ++ I L K V+D
Sbjct: 289 YRSRVRPCVVYGGADIGQQIRDL---ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 345
Query: 207 ECDKVLE---ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDD 263
E D++L+ E +RR V+ + MMFSAT +EI+ + R FL + + V
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 264 EAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQV-IIFVKSTVRANELTKLLNASNF 322
T + Q + + + +K L +L + + ++FV++ A+ L L +
Sbjct: 406 VGS-TSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGY 464
Query: 323 PAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYL 382
++HG Q +R F+ + I V+T V RG+DI + IN+D+P++ ++Y+
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYV 524
Query: 383 HRVGRAGRFGTKGLAISMISSED 405
HR+GR GR G GLA S + ++
Sbjct: 525 HRIGRTGRVGNLGLATSFFNEKN 547
>SPCC10H11.01 [A] KOG0334 RNA helicase
Length = 1014
Score = 152 bits (384), Expect = 9e-37
Identities = 105/360 (29%), Positives = 179/360 (49%), Gaps = 18/360 (5%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L + I G+E P+ +Q IP G DV+ AK+G GKT F+L + + +
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 120 ----GEVSV-VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
GE + +++ RELA QI E F K + +++ YGG K+ I L +
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLL-NIRACCAYGGAPIKDQIADLKRGA- 542
Query: 175 VPHIIVATPGRLKALVR---DKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
I+V TPGR+ ++ + +L V+DE D++ + L V I D
Sbjct: 543 --EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFD-LGFEPQVMRIINNIRPD 599
Query: 232 KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQL 291
+Q ++FSAT + + + R+ L+ P+EI V + + ++Q E+ K +L +L
Sbjct: 600 RQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASE-VEQIVEVRPEESKFSRLLEL 658
Query: 292 LDDLEFNQV----IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFE 347
L +L NQ+ ++FV A+ L L + + ++HG Q +R + +K
Sbjct: 659 LGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGV 718
Query: 348 KRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDE 407
+ ++T V RG+D++ + L +NYD PN + Y+HRVGR GR G G+A++ I+ E ++
Sbjct: 719 FDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEK 778
>Hs15316941 [A] KOG0344 ATP-dependent RNA helicase
Length = 491
Score = 152 bits (384), Expect = 9e-37
Identities = 109/364 (29%), Positives = 175/364 (47%), Gaps = 10/364 (2%)
Query: 56 KDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL 115
+++ + L + I+D GF+ P+ +Q IP +HG ++L A +G GKT F + L QL
Sbjct: 60 QEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 119
Query: 116 -DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
P +++ RELA QI E ++ S+ + K SKK
Sbjct: 120 KQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFD 179
Query: 175 VPHIIVATPGRLKALVRDKH--IDLSHVKNFVIDECDKVLEE--LDMRRDVQDIFRATPR 230
I+V TP RL L++ IDL+ V+ V+DE DK+ E+ R + IF A
Sbjct: 180 ---ILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS 236
Query: 231 DK-QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA 289
K + MFSAT + ++ C+ L N + + + Q+ +E K +
Sbjct: 237 HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMR 296
Query: 290 QLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKR 349
+L+ V++FV+S RA EL L +H Q++R +F+ +
Sbjct: 297 ELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIW 356
Query: 350 ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
+ + T + RGID + +NL INYD P + +Y+HR+GR GR G KG AI+ +EDD+ +
Sbjct: 357 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF-TEDDKPL 415
Query: 410 LAKI 413
L +
Sbjct: 416 LRSV 419
>CE18221 [A] KOG0332 ATP-dependent RNA helicase
Length = 613
Score = 152 bits (384), Expect = 9e-37
Identities = 106/404 (26%), Positives = 197/404 (48%), Gaps = 34/404 (8%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHG--TDVLCQAKSGLGKTAVFVLS 110
+ F++ LKPE+ +A+ F+ P+ +Q+ +P + ++++ QA+SG GKTA FVL+
Sbjct: 209 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 268
Query: 111 TLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
L ++D + L ELA QI + K++ ++K G ++ +
Sbjct: 269 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKG----GNMAAMR 324
Query: 171 KKETVPHIIVATPGRLKA-LVRDKHIDLSHVKNFVIDECDKVLEE---LDMRRDVQDIFR 226
++ I++ TPG + L + K ID S ++ V+DE D ++ D+ + ++
Sbjct: 325 GRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVE 384
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KN 285
Q M+FSAT + + + ++N + + + E + L ++Q+Y++ ++ K
Sbjct: 385 DASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQ-ALPNIKQFYVQCACRDSKY 443
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
+ L L +IF + L + + A +HG M ER FK
Sbjct: 444 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 503
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMP-----------------NEADQYLHRVGRA 388
+ ++ ++T+VF RGID+ ++++ INYD+P + + YLHR+GR
Sbjct: 504 GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRT 563
Query: 389 GRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPS 432
GRFG G+AI++I SED ++ ++ F +KI +DPS
Sbjct: 564 GRFGKTGIAINLIDSEDSMNMINVLENHFQMKIAR-----MDPS 602
>CE18220 [A] KOG0332 ATP-dependent RNA helicase
Length = 638
Score = 152 bits (384), Expect = 9e-37
Identities = 106/404 (26%), Positives = 197/404 (48%), Gaps = 34/404 (8%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHG--TDVLCQAKSGLGKTAVFVLS 110
+ F++ LKPE+ +A+ F+ P+ +Q+ +P + ++++ QA+SG GKTA FVL+
Sbjct: 234 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 293
Query: 111 TLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
L ++D + L ELA QI + K++ ++K G ++ +
Sbjct: 294 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKG----GNMAAMR 349
Query: 171 KKETVPHIIVATPGRLKA-LVRDKHIDLSHVKNFVIDECDKVLEE---LDMRRDVQDIFR 226
++ I++ TPG + L + K ID S ++ V+DE D ++ D+ + ++
Sbjct: 350 GRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVE 409
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KN 285
Q M+FSAT + + + ++N + + + E + L ++Q+Y++ ++ K
Sbjct: 410 DASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQ-ALPNIKQFYVQCACRDSKY 468
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
+ L L +IF + L + + A +HG M ER FK
Sbjct: 469 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 528
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMP-----------------NEADQYLHRVGRA 388
+ ++ ++T+VF RGID+ ++++ INYD+P + + YLHR+GR
Sbjct: 529 GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRT 588
Query: 389 GRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPS 432
GRFG G+AI++I SED ++ ++ F +KI +DPS
Sbjct: 589 GRFGKTGIAINLIDSEDSMNMINVLENHFQMKIAR-----MDPS 627
>CE18219 [A] KOG0332 ATP-dependent RNA helicase
Length = 1022
Score = 152 bits (384), Expect = 9e-37
Identities = 106/404 (26%), Positives = 197/404 (48%), Gaps = 34/404 (8%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHG--TDVLCQAKSGLGKTAVFVLS 110
+ F++ LKPE+ +A+ F+ P+ +Q+ +P + ++++ QA+SG GKTA FVL+
Sbjct: 618 SSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIAQAQSGTGKTAAFVLT 677
Query: 111 TLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
L ++D + L ELA QI + K++ ++K G ++ +
Sbjct: 678 MLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKG----GNMAAMR 733
Query: 171 KKETVPHIIVATPGRLKA-LVRDKHIDLSHVKNFVIDECDKVLEE---LDMRRDVQDIFR 226
++ I++ TPG + L + K ID S ++ V+DE D ++ D+ + ++
Sbjct: 734 GRKLTEQIVIGTPGITRDYLQKYKCIDPSKIRCLVLDEADVMIYHQGFTDISTTIYNMVE 793
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KN 285
Q M+FSAT + + + ++N + + + E + L ++Q+Y++ ++ K
Sbjct: 794 DASDSVQSMLFSATYDEPVINFATKIIKNAIVVMLKREEQ-ALPNIKQFYVQCACRDSKY 852
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKE 345
+ L L +IF + L + + A +HG M ER FK
Sbjct: 853 AAIVNLYSGLAVASSVIFCHTKASVMWLYENMRARGHQVDVLHGDMTVVERADTIIHFKR 912
Query: 346 FEKRICVSTDVFGRGIDIERINLAINYDMP-----------------NEADQYLHRVGRA 388
+ ++ ++T+VF RGID+ ++++ INYD+P + + YLHR+GR
Sbjct: 913 GDFKVLITTNVFARGIDVAQVSVVINYDLPIKYTDEGTPMVVDGFTQPDCETYLHRIGRT 972
Query: 389 GRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPS 432
GRFG G+AI++I SED ++ ++ F +KI +DPS
Sbjct: 973 GRFGKTGIAINLIDSEDSMNMINVLENHFQMKIAR-----MDPS 1011
>At3g09720 [A] KOG0344 ATP-dependent RNA helicase
Length = 545
Score = 151 bits (382), Expect = 2e-36
Identities = 102/346 (29%), Positives = 168/346 (48%), Gaps = 13/346 (3%)
Query: 66 RAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD-----PVQG 120
R + + GF+ P+ +Q+ IP + G + A +G GKT F+ L +L P
Sbjct: 154 RNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKVLNCRPSTD 213
Query: 121 EVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIV 180
+ V+L ARELA Q E + +K + F+ K + + +++
Sbjct: 214 GIRAVILSPARELAAQTAREGKKL------IKGSNFHIRLMTKPLVKTADFSKLWCDVLI 267
Query: 181 ATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM-MFSA 239
+TP RLK ++ K IDLS V+ V+DE DK+ E+ + + + + +A + +FSA
Sbjct: 268 STPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQ-SLLKQIDCVVKACSNPSIIRSLFSA 326
Query: 240 TLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQ 299
TL + + R + + + + + + + Q+ +E+ K L Q +
Sbjct: 327 TLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPP 386
Query: 300 VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGR 359
V+IFV+S RA EL L N A +H + ER F+ EK + ++TDV R
Sbjct: 387 VLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIAR 446
Query: 360 GIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
G+D + IN INYD P+ A Y+HR+GR+GR G G AI+ + +D
Sbjct: 447 GMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 492
>7296646 [A] KOG0331 ATP-dependent RNA helicase
Length = 577
Score = 151 bits (382), Expect = 2e-36
Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 17/370 (4%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F + L + + I G++ P+ +Q P ++ G++ + AK+G GKT ++L +
Sbjct: 141 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 200
Query: 115 LD---PVQ---GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDL 168
++ P+Q G +++V L RELA QI+ F T VF G + DL
Sbjct: 201 INNQQPLQRGDGPIALV-LAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDL 259
Query: 169 LSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
E I++ATPGRL + +L V+DE D++L+ + ++ I
Sbjct: 260 QRGCE----IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD-MGFEPQIRKIVSQI 314
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKL 288
D+Q +M+SAT +E++ + FL N ++I + H ++Q +E K KL
Sbjct: 315 RPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKL 374
Query: 289 AQLLDDL-----EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAF 343
LL D+ ++IIFV++ R + L + + + +HG Q ER + F
Sbjct: 375 KTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREF 434
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
+ + I V+TDV RG+D++ I IN+D P ++ Y+HR+GR GR TKG + + +
Sbjct: 435 RSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTK 494
Query: 404 EDDEQVLAKI 413
+ +Q A +
Sbjct: 495 NNAKQAKALV 504
>Hs19923595 [A] KOG0337 ATP-dependent RNA helicase
Length = 882
Score = 150 bits (379), Expect = 4e-36
Identities = 108/361 (29%), Positives = 177/361 (48%), Gaps = 16/361 (4%)
Query: 52 STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST 111
S GF+ L + + I+ G++ P+ +Q+ TIP + G DV+ A++G GKTA F+L
Sbjct: 95 SGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPM 154
Query: 112 LQQLDP--VQGEVSVVVLCNARELAYQIRNEYLRFSKYM---PDVKTAVFYGGTEYKNDI 166
++L Q ++L RELA Q L+F+K + +KTA+ GG ++
Sbjct: 155 FERLKTHSAQTGARALILSPTRELALQT----LKFTKELGKFTGLKTALILGGDRMEDQF 210
Query: 167 DLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFR 226
L + P II+ATPGRL + + + L V+ V DE D++ E + +Q+I
Sbjct: 211 AALHEN---PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFE-MGFAEQLQEIIA 266
Query: 227 ATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNR 286
P Q ++FSATL + + R L P+ I +D + KL L+ + + E K
Sbjct: 267 RLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLN-EQLKTSFFLVREDTKAA 325
Query: 287 KLAQLLDDL--EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFK 344
L LL ++ +Q ++FV + A LT+LL ++ + R F
Sbjct: 326 VLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFT 385
Query: 345 EFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSE 404
+ + TD+ RG+DI ++ INY P + +LHRVGR R G G A S+++ +
Sbjct: 386 LGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPD 445
Query: 405 D 405
+
Sbjct: 446 E 446
>YGL171w [A] KOG0344 ATP-dependent RNA helicase
Length = 564
Score = 150 bits (378), Expect = 5e-36
Identities = 112/413 (27%), Positives = 196/413 (47%), Gaps = 24/413 (5%)
Query: 35 ESQAKDSDKKGSYVGIHST----GFKD----FLLKPELSRAIIDCGFEHPSEVQQHTIPQ 86
E+ A KG+ GI F+D F L +I+ GF P+ +Q IP
Sbjct: 96 EASALRKSYKGNVSGIDIPLPIGSFEDLISRFSFDKRLLNNLIENGFTEPTPIQCECIPV 155
Query: 87 SIHGTDVLCQAKSGLGKTAVFVLSTLQQL--DPVQGEVSVVVLCNARELAYQIRNEYLRF 144
+++ DVL +G GKT F++ +QQ+ D + +++ +ELA QI E +
Sbjct: 156 ALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQIFIECFKL 215
Query: 145 S-KYMPDVKTAVFYG------GTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDL 197
S K + K + G + KN + K + II++TP RL +V+++ +DL
Sbjct: 216 SYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYD----IIISTPLRLIDVVKNEALDL 271
Query: 198 SHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPL 257
S VK+ + DE DK+ ++ + + + + MFSAT+ + I + + +P+
Sbjct: 272 SKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVEEIAQSIMMDPV 331
Query: 258 EIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQ-VIIFVKSTVRANELTKL 316
+ + + + Q+ NE+ K + QL+ + EF +IIF++S RA L
Sbjct: 332 RVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYHE 391
Query: 317 LNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPN 376
L +H +R + FK E + TDV RGID + +NL INYD+P
Sbjct: 392 LMYDRINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPG 451
Query: 377 EADQYLHRVGRAGRFGTKGLAISMISSEDDEQV--LAKIQERFDVKITEFPEE 427
+ Y+HR+GR GR G G AI+ + +D + + + ++ +++E+ ++
Sbjct: 452 SSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDK 504
>7293941 [A] KOG0344 ATP-dependent RNA helicase
Length = 594
Score = 149 bits (376), Expect = 8e-36
Identities = 108/363 (29%), Positives = 175/363 (47%), Gaps = 23/363 (6%)
Query: 56 KDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL 115
+DF + P L + ++ F+HP+ +Q +P + ++ A +G GKT F+ + L
Sbjct: 122 RDFKMLPRLQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGL 181
Query: 116 DPVQGE-VSVVVLCNARELAYQIRNEYLRFSK-------YMPDVKTAVFYGGTEYKNDID 167
+ + +VL RELA QI E ++ ++ V A G E K D
Sbjct: 182 RAHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYD 241
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKH--IDLSHVKNFVIDECDKVLEE--LDMRRDVQD 223
+L V+TP R++ L++ + +DLSHV+ FV+DE D+++EE + + + D
Sbjct: 242 IL----------VSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDD 291
Query: 224 IFRATPRD-KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK 282
I+ A K V FSAT + + R L+N + I + + T Q+ +E
Sbjct: 292 IYAACSNPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEG 351
Query: 283 EKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKA 342
K + L+ V++FV+S RA +L + L +H Q +R KA
Sbjct: 352 GKLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKA 411
Query: 343 FKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
F+E + + T++ GRGID + +NL INYD P Y+HR+GR GR G G AI+ +
Sbjct: 412 FREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFT 471
Query: 403 SED 405
ED
Sbjct: 472 QED 474
>7291960_2 [A] KOG0337 ATP-dependent RNA helicase
Length = 883
Score = 149 bits (375), Expect = 1e-35
Identities = 115/419 (27%), Positives = 194/419 (45%), Gaps = 27/419 (6%)
Query: 4 EAEEDLLEYSDNEQEVQ-------VDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFK 56
E+E DL D +++ +DN A G K KK S GF+
Sbjct: 47 ESEADLDFGEDRKKQADEIPGFPSLDNDA---GTSDRGADILKSKSKKNK-----SGGFQ 98
Query: 57 DFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL---STLQ 113
L EL + I G++ P+ +Q+ TIP + G DV+ AK+G GKTA F++ LQ
Sbjct: 99 SMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQ 158
Query: 114 QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKE 173
+ +P +G ++L RELA Q ++M ++K+ + GG + +
Sbjct: 159 RREPTKG-ARALILSPTRELAVQTYKFIKELGRFM-ELKSILVLGGDSMDSQFSAI---H 213
Query: 174 TVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQ 233
T P +IVATPGR L + + L+ ++ V DE D++ E + + + P +Q
Sbjct: 214 TCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE-MGFGEQLNETLHRLPSSRQ 272
Query: 234 VMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLD 293
+MFSATL + + R L +P+ I +D E+KL L ++ ++ L LL
Sbjct: 273 TVMFSATLPKLLVEFARAGLNDPVLIRLDVESKLP-DALALKFLYCRPDDRYTALVVLLK 331
Query: 294 DL--EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
+ +Q ++F + ++ +L + +V+ + R F + +
Sbjct: 332 YVIPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVL 391
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVL 410
+ TDV RGIDI ++ +N P + ++HRVGR R G G A S++S++D +L
Sbjct: 392 IVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLL 450
>Hs13787206 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 670
Score = 148 bits (374), Expect = 1e-35
Identities = 117/442 (26%), Positives = 212/442 (47%), Gaps = 25/442 (5%)
Query: 1 MSHEAEEDLLEY-SDNEQEVQVDNKATEVNAEGNGESQAKDSDKK-------GSYVGIHS 52
M ++AE D + ++N+ + + ++ T E N E D D+ G
Sbjct: 117 MVNDAEPDTKKAKTENKGKSEEESAETTKETENNVEKPDNDEDESEVPSLPLGLTGAFED 176
Query: 53 TGFKDF--LLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS 110
T F L+ +AI + GF + +E+Q +I + G D+L AK+G GKT F++
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236
Query: 111 TLQQLDPVQ----GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKT-AVFYGGTEYKND 165
++ + ++ V++L RELA Q + V T + GG+ +
Sbjct: 237 AVELIVKLRFMTRNGTGVLILSPTRELAMQTFGVLKELMTH--HVHTYGLIMGGSNRSAE 294
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKH-IDLSHVKNFVIDECDKVLEELDMRRDVQDI 224
L +IIVATPGRL +++ +++ VIDE D++L+ + +++ I
Sbjct: 295 AQKLGNGI---NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILD-VGFEEELKQI 350
Query: 225 FRATPRDKQVMMFSATLSQEIRPICRRFLQN-PLEIFVDDE-AKLTLHGLQQYYIKLNEK 282
+ P +Q M+FSAT ++++ + R L+ PL + VDD+ A T+ GL+Q Y+ +
Sbjct: 351 IKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSE 410
Query: 283 EKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKA 342
++ L L ++++F S + +LLN + P + +HG KQ +R +
Sbjct: 411 KRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQ 470
Query: 343 FKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
F + + TDV RG+DI ++ + YD P++ +Y+HRVGR R G G +++
Sbjct: 471 FCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTAR-GLNGRGHALLI 529
Query: 403 SEDDEQVLAKIQERFDVKITEF 424
+E + ++ V ++EF
Sbjct: 530 LRPEELGFLRYLKQSKVPLSEF 551
>Hs13514831 [A] KOG0343 RNA Helicase
Length = 875
Score = 147 bits (370), Expect = 4e-35
Identities = 107/393 (27%), Positives = 194/393 (49%), Gaps = 27/393 (6%)
Query: 53 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
T F DF L + + + + + +E+Q+ TI ++ G DVL AK+G GKT F++ L
Sbjct: 69 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 113 QQLDPVQGE----VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDL 168
+ L +Q + V+++ RELAYQ E LR D + GG + K++ +
Sbjct: 129 EALYRLQWTSTDGLGVLIISPTRELAYQTF-EVLRKVGKNHDFSAGLIIGGKDLKHEAER 187
Query: 169 LSKKETVPHIIVATPGRLKALVRDKHID------LSHVKNFVIDECDKVLEELDMRRDVQ 222
++ +I+V TPGRL +H+D + ++ V+DE D++L+ + +
Sbjct: 188 INNI----NILVCTPGRLL-----QHMDETVSFHATDLQMLVLDEADRILD-MGFADTMN 237
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHG-LQQYYIKLNE 281
+ P+ +Q ++FSAT ++ ++ + R L+NP ++V ++AK + L+Q YI
Sbjct: 238 AVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCEL 297
Query: 282 KEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITV---HGHMKQEERIA 338
++K L L + I+F S L ++ P +++ HG +Q R+
Sbjct: 298 QQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLR-PGVSILALHGRQQQMRRME 356
Query: 339 RYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAI 398
Y F + +TD+ RG+D +N + +D P +A+ Y+HR GR R+ G A+
Sbjct: 357 VYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEAL 416
Query: 399 SMISSEDDEQVLAKIQERFDVK-ITEFPEEGVD 430
++ + V +Q++ VK I PE+ +D
Sbjct: 417 LILLPSEKAMVQQLLQKKVPVKEIKINPEKLID 449
>At5g05450 [A] KOG0345 ATP-dependent RNA helicase
Length = 593
Score = 147 bits (370), Expect = 4e-35
Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 30/382 (7%)
Query: 53 TGFKDFLLKPELSRAIIDC----GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFV 108
T F D L+P LS II+ FE + VQ TIP DV A +G GKT FV
Sbjct: 14 TRFSD--LEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFV 71
Query: 109 LSTLQQL------DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEY 162
+ ++ L P +V V++ REL+ QI N F + +V + + GG E
Sbjct: 72 VPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131
Query: 163 KNDIDLLSKKETVPHIIVATPGRLKALV-RDKHIDLSHVKNFVIDECDKVLEELDMRRDV 221
K D+ ++ ++ ++++ TPGRL ++ R + +D +++ ++DE D++LE + +R V
Sbjct: 132 KADMKIIEEEGC--NVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLE-MGFQRQV 188
Query: 222 QDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL----------TLHG 271
I P+ ++ +FSAT ++ + + + L+NP+ + V ++K T G
Sbjct: 189 NYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSG 248
Query: 272 LQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANE----LTKLLNASNFPAITV 327
L Y++ +K+ +L LL ++I+F + + L+K+ + I +
Sbjct: 249 LHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPI 308
Query: 328 HGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGR 387
HG MKQ R +F + + TDV RG+DI I+ + YD P + + + HR GR
Sbjct: 309 HGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGR 368
Query: 388 AGRFGTKGLAISMISSEDDEQV 409
R G +G AI + +++ V
Sbjct: 369 TARLGRQGRAIVFLLPKEEAYV 390
>SPBC4F6.07c [A] KOG0347 RNA helicase
Length = 648
Score = 145 bits (367), Expect = 9e-35
Identities = 116/461 (25%), Positives = 215/461 (46%), Gaps = 42/461 (9%)
Query: 4 EAEEDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPE 63
EA E + +++ + ++V ++ E + + + + G+ + + F L PE
Sbjct: 73 EASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLSPE 132
Query: 64 LSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ-LDPVQGE- 121
+ ++ GF P +Q IP++ G D++ +A +G GKT F + L+ L V +
Sbjct: 133 MLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKY 192
Query: 122 VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVA 181
V +V+ RELA+QI ++ K P+++ GG + LL+K PH++VA
Sbjct: 193 VQALVVAPTRELAHQIC-QHFELIKPSPNIRVMSITGGLAVQKQQRLLNKH---PHVVVA 248
Query: 182 TPGRLKALVRDKHI--DLSHVKNFVIDECDKVLEEL---DMRRDVQDIFRATPRDKQVMM 236
TPGRL +++ + ++ + +K V+DE D++L++ ++ + ++ + +Q +
Sbjct: 249 TPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFI 308
Query: 237 FSATLSQEIRPICRRFLQ--------NPLEIFVDDE-----------------AKLTLHG 271
FSAT + ++ ++ ++ +P+E + + A L G
Sbjct: 309 FSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEG 368
Query: 272 LQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHM 331
L I+ EK+ L L+ + ++F +T LN P+ +H +
Sbjct: 369 L----IECAPAEKDLYLYYLIMRYP-GKTMVFANGIEDIKRITPFLNELKVPSYPLHAQL 423
Query: 332 KQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRF 391
Q++R+ + FK K + V TDV RGIDI + I+Y +P+ AD Y+HR GR R
Sbjct: 424 DQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARA 483
Query: 392 GTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPS 432
G++I M ++ Q L ++ R KI F VD S
Sbjct: 484 NEDGVSILMCGPKELSQ-LKRLCYRLKKKIETFINFPVDMS 523
>ECU10g0690 [A] KOG0345 ATP-dependent RNA helicase
Length = 463
Score = 145 bits (365), Expect = 2e-34
Identities = 109/356 (30%), Positives = 179/356 (49%), Gaps = 28/356 (7%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
G +D + L + I + GF +EVQ IP+ + G DV+ Q+ +G GKT F+ L
Sbjct: 5 GIEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILS 64
Query: 114 QLDPVQGE----VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
+ +G V+ VV+ RELA QIR F DVK F GG + D +
Sbjct: 65 CIYDGKGRGRPGVTAVVITPTRELALQIREVAGLF-----DVKCECFIGGMSIEEDYKRM 119
Query: 170 SKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
++ + I V TPGRL +V + S + + V+DE DK+L + + P
Sbjct: 120 KEEFS---IAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLLG-FGFEEKLMQLLAKLP 175
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFV-DDEAKLTLHGLQQYYIKLNEKEKNRKL 288
R++ +FSAT + + + R FL+NP+ I V ++E + L YI ++ EK L
Sbjct: 176 RNRVTGLFSATRNDSVDKLSRVFLRNPVSINVGNNEMPVALE-----YIVVSPMEK---L 227
Query: 289 AQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAIT-VHGHMKQEERIARYKAFKEFE 347
L+D + + I+F + + + L++ + F I +HG + Q+ER + ++EF
Sbjct: 228 LVLMDIVTGRRCIVFFATCSEVDFFSGLVSRAGFGNICKIHGKISQDER---NRVYEEFF 284
Query: 348 KR--ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
+R + TDV RGID ++L +++D+P E +HR GR R G+KG ++ +
Sbjct: 285 QRDGLLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFV 340
>YDL031w [A] KOG0337 ATP-dependent RNA helicase
Length = 995
Score = 144 bits (363), Expect = 3e-34
Identities = 117/457 (25%), Positives = 205/457 (44%), Gaps = 73/457 (15%)
Query: 9 LLEYSDNEQ----EVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPEL 64
+LE SD+E + Q + +VN + + K KKGS F F L +
Sbjct: 97 MLEMSDDENNASGKTQTGDDEDDVNEYFSTNNLEKTKHKKGS--------FPSFGLSKIV 148
Query: 65 SRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSV 124
I GF P+ +Q+ TIP + D++ A++G GKTA F+L +++L G++
Sbjct: 149 LNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGA 208
Query: 125 --VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVAT 182
V+L +RELA Q N + F++ ++++ + GG + ++ T P +I+AT
Sbjct: 209 RAVILSPSRELAMQTFNVFKDFARGT-ELRSVLLTGGDSLEEQFGMMM---TNPDVIIAT 264
Query: 183 PGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
PGR L + ++DL V+ V DE D++ E + + + ++ + P +Q ++FSATL
Sbjct: 265 PGRFLHLKVEMNLDLKSVEYVVFDEADRLFE-MGFQEQLNELLASLPTTRQTLLFSATLP 323
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLT-------------------LHGLQQYY-IKLNEK 282
+ + L NP+ + +D E K++ L+ LQ+ I L
Sbjct: 324 NSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATS 383
Query: 283 EKNRKLAQLLDDLEFNQ----------------------------------VIIFVKSTV 308
E+ +KL ++ + + I+FV +
Sbjct: 384 EQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRH 443
Query: 309 RANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINL 368
+++LL + ++G + Q R + F+ I V TDV RG+DI +
Sbjct: 444 HVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLAN 503
Query: 369 AINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
INY +P + ++HRVGR R G KG A S+++ +
Sbjct: 504 VINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENE 540
>CE23814 [A] KOG0340 ATP-dependent RNA helicase
Length = 696
Score = 143 bits (360), Expect = 6e-34
Identities = 98/344 (28%), Positives = 175/344 (50%), Gaps = 19/344 (5%)
Query: 91 TDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPD 150
T+ C A++G GKT F + LQ+L + ++L RELA+QI ++ K +
Sbjct: 184 TEEKCCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGKPIT- 242
Query: 151 VKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHV----KNFVID 206
+K +V GG + LS++ PH++VATPGRL L+ ++ V + FV+D
Sbjct: 243 LKCSVIVGGRSLIHQARELSER---PHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLD 299
Query: 207 ECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAK 266
E D++LE ++ IF + +Q ++ SAT++ I + R + P F +D+ K
Sbjct: 300 EADRMLEG-QYNDQLKPIFESISEKRQTLLLSATITNNINMLHRVSTRKPY--FFEDKGK 356
Query: 267 ---LTLHGLQQYYIKLNEKEKNRKLAQLLDDLEF----NQVIIFVKSTVRANELTKLLNA 319
T+ L+Q Y+ K+ L ++ + + V+IF ++ L +
Sbjct: 357 DDESTVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEG 416
Query: 320 SNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEAD 379
F ++H + Q++R+A AF+ ++ + TDV RG+DI ++L +N+++P
Sbjct: 417 LGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPK 476
Query: 380 QYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITE 423
Y+HRVGR+ R G G A+S ++ D E +L +++ K+ E
Sbjct: 477 TYIHRVGRSARAGRFGSALSFVTQYDVE-LLQAVEQVIGKKLDE 519
>At4g16630 [A] KOG0338 ATP-dependent RNA helicase
Length = 683
Score = 142 bits (358), Expect = 1e-33
Identities = 118/438 (26%), Positives = 199/438 (44%), Gaps = 64/438 (14%)
Query: 4 EAEEDLLEYSDNEQE--VQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLK 61
E EED + ++QE + D++A E E ++ K V H+ F + L
Sbjct: 119 EEEEDASDAETDKQEEYLSEDDEAAEYKPE---DATPKPFFSTVDGVSFHADTFMELNLS 175
Query: 62 PELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGK------------------ 103
L RA G++ P+ +Q IPQ D+ A +G GK
Sbjct: 176 RPLLRACETLGYKKPTPIQVQFIPQEWR--DLCASAITGSGKVSTRLMVLCNTEILFRYL 233
Query: 104 --TAVFVLSTLQQLDPVQGEV---SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYG 158
TA F L TL++L V V++L RELA QI + +++ D+K + G
Sbjct: 234 TNTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFT-DIKCGLIVG 292
Query: 159 GTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDK-HIDLSHVKNFVIDECDKVLEELDM 217
G + +L ++P I+VATPGR+ +R+ +DL + ++DE D++L+
Sbjct: 293 GLSVREQEVVL---RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQT-GF 348
Query: 218 RRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYI 277
++ ++ R P+ +Q M+FSAT+++E++ + + L PL + D A+ GL + Y+
Sbjct: 349 ATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRP-PGLTEEYL 407
Query: 278 KLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERI 337
+ EF + A+ L L + A +HG++ Q +R+
Sbjct: 408 R-----------------EFFVPSCASGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRL 450
Query: 338 A----------RYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGR 387
+ F++ E ++TDV RG+DI + INY P E D Y+HRVGR
Sbjct: 451 DVRNLGTSALFSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGR 510
Query: 388 AGRFGTKGLAISMISSED 405
R G +G A++ ++ D
Sbjct: 511 TARAGREGYAVTFVTDSD 528
>YFL002c [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 140 bits (353), Expect = 4e-33
Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 24/391 (6%)
Query: 58 FLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP 117
F L P + + GFE + VQ TIP DV+ + +G GKTA FV+ L+++
Sbjct: 12 FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVK 71
Query: 118 VQGEVSV--------VVLCNARELAYQIRNEYLRFSKYMPD----VKTAVFYGGTEYKND 165
+ S +++ REL+ QI + L F ++ P +K + G E
Sbjct: 72 EEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVR 131
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIF 225
D+ + P I++ TPGR+ ++ + S V+DE D++L+ + +D + I
Sbjct: 132 DDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLD-MSFIKDTEKIL 190
Query: 226 RATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKN 285
R P+ ++ +FSAT+ I + L+NP+ I V+ + + L+ Y +N EK
Sbjct: 191 RLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAP-SSLKLNYCVVNPAEKL 249
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN--------ASNFPAITVHGHMKQEERI 337
+ L +L++ +F + I++ + V + + + ++HG ++ R
Sbjct: 250 QLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSART 309
Query: 338 ARYKAFKE-FEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGL 396
AF + + +TDV RGIDI ++L I D P D ++HR GR GR G
Sbjct: 310 KTLTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGK 369
Query: 397 AISMISSEDDEQVLAKIQERFDVKITEFPEE 427
AI+ ++ +E + +Q + +V++ E E
Sbjct: 370 AITFLNEGREEDFIPFMQVK-NVELEELDLE 399
>ECU10g1680 [A] KOG0343 RNA Helicase
Length = 452
Score = 140 bits (352), Expect = 5e-33
Identities = 109/384 (28%), Positives = 193/384 (49%), Gaps = 25/384 (6%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+D + + + + + GF EVQQ IP ++ G D++ +++G GKT F++ TLQ+
Sbjct: 6 FEDLKIDQRIEKGLRENGFVSMKEVQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQR 65
Query: 115 LDPVQ----GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
L + + +V+ RELA QI + R +KY + T + GG E ++++
Sbjct: 66 LVSLGWGGGDGLGCLVITPTRELALQIFDVLSRIAKYTV-LSTGLIMGGLEAEDEL---- 120
Query: 171 KKETVPHIIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
K +I+V TPGRL + L + ++ ++V+ ++DE DK++E + + ++DI P
Sbjct: 121 LKVNQMNILVCTPGRLLQHLQENPYLSTANVQILILDEADKMIE-MGFKEVLEDILEYIP 179
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA 289
+ KQ ++FSAT I + L++P I + E L+QY+ + +K L
Sbjct: 180 QKKQTLLFSATPKASTARILK--LEDPRIISIYKEEGFPSQ-LRQYFYMMRTGDKINYLH 236
Query: 290 QLL-DDLEFNQVIIF-----VKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAF 343
+ + E ++ F VK E KL N + G M Q++RI +K F
Sbjct: 237 TFIGSNPEVKGIVFFSTCKEVKFHCLLFERLKLRNR----IFCLSGGMSQKQRIDVFKRF 292
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
+ + I TD+ RG+D ++++ I YD P + Y+HRVGR R +G + +
Sbjct: 293 VKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARNSERGESYVYL-V 351
Query: 404 EDDEQVLAKIQERFDVKITEFPEE 427
+E++L IQ++ +K E E+
Sbjct: 352 HGEEKLLTDIQKKGWIKKQEGMED 375
>Hs13129006 [A] KOG0331 ATP-dependent RNA helicase
Length = 737
Score = 139 bits (351), Expect = 6e-33
Identities = 106/418 (25%), Positives = 199/418 (47%), Gaps = 33/418 (7%)
Query: 8 DLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRA 67
D+ EY + V + +T +++ E K+G+ F +F + E +
Sbjct: 100 DIDEYEKKSKRVSSLDTSTHKSSDNKLEETLTREQKEGA--------FSNFPISEETIKL 151
Query: 68 IIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS---- 123
+ G + +Q T G D++ QA++G GKT F + +++L Q +
Sbjct: 152 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 211
Query: 124 --VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVA 181
V+VL RELA Q+ ++ ++ + A FYGGT Y++ I+ + I+V
Sbjct: 212 PKVLVLAPTRELANQVAKDFKDITRKL---SVACFYGGTSYQSQINHIRNGID---ILVG 265
Query: 182 TPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPR-----DKQVMM 236
TPGR+K ++ +DLS +++ V+DE D++L+ L V+DI + + + Q ++
Sbjct: 266 TPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLD-LGFAEQVEDIIHESYKTDSEDNPQTLL 324
Query: 237 FSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHG---LQQYYIKLNEKEKNRKLAQLLD 293
FSAT Q + + ++++++ E VD K+T ++ I+ + ++ + +L
Sbjct: 325 FSATCPQWVYKVAKKYMKSRYEQ-VDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQ 383
Query: 294 DLEFNQ--VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
++ IIF ++ E+ + A +HG + Q +R K F+E ++
Sbjct: 384 VYSGSEGRAIIFCETKKNVTEMAMNPHIKQ-NAQCLHGDIAQSQREITLKGFREGSFKVL 442
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
V+T+V RG+DI ++L I P + + Y+HR GR GR G G+ I + Q+
Sbjct: 443 VATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQL 500
>7300808 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 663
Score = 139 bits (351), Expect = 6e-33
Identities = 111/420 (26%), Positives = 207/420 (48%), Gaps = 26/420 (6%)
Query: 7 EDLLEYSDNEQEVQVDNKATEV---NAEGNGESQAKDSDKKGSYVGIHSTGFKDF----- 58
ED + D ++E V K T++ ++ AKD + + + ++D
Sbjct: 111 EDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSF 170
Query: 59 -LLKPELS----RAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
LK +S RAI + GF +E+Q ++ + G D++ A++G GKT F++ ++
Sbjct: 171 ASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVE 230
Query: 114 QLDPVQ----GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
++ ++ V+++ REL+ Q + V GG+ + + + L
Sbjct: 231 LINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVM-GGSNRQVESEKL 289
Query: 170 SKKETVPHIIVATPGRLKALVRDKHIDL-SHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
K +I+VATPGRL +++ L +++ +IDE D++LE + +++ I
Sbjct: 290 GKGI---NILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILE-IGFEEELKQIINLL 345
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQN-PLEIFV-DDEAKLTLHGLQQYYIKLNEKEKNR 286
P+ +Q M+FSAT + I + + L++ P+ + V D++ T+ GL+Q YI +++
Sbjct: 346 PKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLL 405
Query: 287 KLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEF 346
L L +V++F S + +L N + P ++HG KQ +R + F
Sbjct: 406 VLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNA 465
Query: 347 EKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGR-FGTKGLAISMISSED 405
E I + TDV RG+DI +++ + YD P++ +Y+HRVGR R GT G A+ ++ E+
Sbjct: 466 ESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEE 525
>YJL033w [A] KOG0343 RNA Helicase
Length = 770
Score = 139 bits (350), Expect = 8e-33
Identities = 100/378 (26%), Positives = 187/378 (49%), Gaps = 24/378 (6%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
FKD + + + + F +E+Q +IP S+ G DVL AK+G GKT F++ +++
Sbjct: 43 FKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEK 102
Query: 115 LDPVQGE----VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLS 170
L + + +++ RELA QI + + + GG + K +++ +S
Sbjct: 103 LYREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHT-SFSAGLVIGGKDVKFELERIS 161
Query: 171 KKETVPHIIVATPGR-LKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
+ +I++ TPGR L+ L + ++ S+++ V+DE D+ L+ + ++ + I
Sbjct: 162 RI----NILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLD-MGFKKTLDAIVSTLS 216
Query: 230 RDKQVMMFSATLSQEIRPICRRFL--------QNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
+Q ++FSAT SQ + + R L + ++ V+ EA T LQQ+YI++
Sbjct: 217 PSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEAS-TPETLQQFYIEVPL 275
Query: 282 KEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITV---HGHMKQEERIA 338
+K L + ++I+F+ S+ + + + + P I++ HG KQ R
Sbjct: 276 ADKLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQ-PGISLMHLHGRQKQRARTE 334
Query: 339 RYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAI 398
F ++ +TDV RGID ++ + D P + D Y+HRVGR R+G KG ++
Sbjct: 335 TLDKFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSL 394
Query: 399 SMISSEDDEQVLAKIQER 416
M++ ++ E L ++ R
Sbjct: 395 IMLTPQEQEAFLKRLNAR 412
>CE27553 [A] KOG0337 ATP-dependent RNA helicase
Length = 853
Score = 139 bits (350), Expect = 8e-33
Identities = 102/382 (26%), Positives = 183/382 (47%), Gaps = 35/382 (9%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
G++ L + +AI GF P+ +Q+ TIP + G DV+ +++G GKTA FV+ LQ
Sbjct: 25 GWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQ 84
Query: 114 QLDPVQGE-VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
+L + +++ RELA Q ++ ++ A GG + + + +
Sbjct: 85 KLKRRDTTGIRALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQFSTIHEN 143
Query: 173 ETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDK 232
P I++ATPGRL ++ + + LS+V+ V DE D+ L E+ + + + + P +
Sbjct: 144 ---PDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADR-LFEMGFQDQLTETLKRIPESR 199
Query: 233 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLT-------------------LHGLQ 273
Q ++FSATL + + + L +P+ + +D + K++ LH +
Sbjct: 200 QTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCR 259
Query: 274 QY-YIKLNE---------KEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFP 323
+ + KL E K+K L ++ D E Q ++F + + +L+ +
Sbjct: 260 NFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGID 319
Query: 324 AITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLH 383
V+ + R + F E + I V TDV RG+DI ++ IN P +A ++H
Sbjct: 320 CSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVH 379
Query: 384 RVGRAGRFGTKGLAISMISSED 405
RVGR R G G AIS+I++++
Sbjct: 380 RVGRVARAGRSGTAISLIANDE 401
>At5g62190 [A] KOG0331 ATP-dependent RNA helicase
Length = 671
Score = 138 bits (347), Expect = 2e-32
Identities = 118/448 (26%), Positives = 211/448 (46%), Gaps = 46/448 (10%)
Query: 6 EEDLLEYSDNEQEVQVDNKAT-----------EVNAEGNGESQAKDSDKKGSYVGIHST- 53
+E L+ SD+++E K+ E + + S+ K S KK +G+
Sbjct: 33 KEQKLKLSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSSSEKKKSSKKVK-LGVEDVE 91
Query: 54 -----GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFV 108
F + L + G E +Q T + G D++ +A++G GKT FV
Sbjct: 92 VDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFV 151
Query: 109 LSTLQQL--DPVQGE--------VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYG 158
L L+ L P + + SV+VL RELA Q+ ++ + + + + YG
Sbjct: 152 LPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYG 210
Query: 159 GTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMR 218
G Y L + I+V TPGR+K + +++D S+++ V+DE D++L +
Sbjct: 211 GDSYPVQEGKLKRGVD---IVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLR-MGFV 266
Query: 219 RDVQDIFRATPRDKQV--MMFSATLSQEIRPICRRFL---QNPLEIFVDDEAKLTLHGLQ 273
DV+ I +V ++FSATL ++ I RFL Q +++ +D+ K + + ++
Sbjct: 267 EDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKAS-NSVR 325
Query: 274 QYYIKLNEKEKNRKLAQLLDDLEFN-QVIIFVKSTVRANELTKLLNASNFPAITVHGHMK 332
I N+ R + ++ Q IIF ++ V+ +EL+ LL+ S +HG +
Sbjct: 326 HIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIP 381
Query: 333 QEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
Q +R F+ + V+T+V RG+DI + L I + P E + Y+HR GR GR G
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAG 441
Query: 393 TKGLAISMISSEDDEQVLAKIQERFDVK 420
G+A+++ S + +++I++ +K
Sbjct: 442 NTGVAVTLYDSR--KSSVSRIEKEAGIK 467
>CE22474 [A] KOG0336 ATP-dependent RNA helicase
Length = 504
Score = 137 bits (346), Expect = 2e-32
Identities = 108/363 (29%), Positives = 175/363 (47%), Gaps = 30/363 (8%)
Query: 72 GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS-------- 123
GFE PS +Q P + G D + +++G GKT F+L L +D +
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKP 162
Query: 124 ---VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIV 180
V+VL RELA QI E ++S K+ YGG ++ I++
Sbjct: 163 SPFVLVLSPTRELAQQIEGEVKKYS--YNGYKSVCLYGGGSRPEQVEACRGGV---EIVI 217
Query: 181 ATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRDKQVMMF 237
ATPGRL L D I L+ V V+DE D++L+ E+ +RR +F P D+ V +
Sbjct: 218 ATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRI---LFEIRP-DRLVALT 273
Query: 238 SATLSQEIRPICRRFLQNPLEIFVDDEAKLT-LHGLQQYYIKLNEKEKNRKLAQLLDDL- 295
SAT + +R + ++ + + + V+ LT + Q++ + + ++ ++++ L
Sbjct: 274 SATWPEGVRKLTDKYTKEAV-MAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLT 332
Query: 296 ----EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRIC 351
+ ++IIFVKS V A+ L+ + +HG Q +R + E +I
Sbjct: 333 AAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQIL 392
Query: 352 VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLA 411
V+TD+ RGID+ I +NYD P + ++Y+HRVGR GR G KG A+S + D
Sbjct: 393 VATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEG 452
Query: 412 KIQ 414
IQ
Sbjct: 453 LIQ 455
>At5g54910 [A] KOG0343 RNA Helicase
Length = 739
Score = 136 bits (343), Expect = 5e-32
Identities = 104/393 (26%), Positives = 195/393 (49%), Gaps = 27/393 (6%)
Query: 39 KDSDKKGSYVGIHSTGFKDFLLKP---ELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLC 95
K D K V G + F P + R + D + ++VQ IP ++ G D+L
Sbjct: 54 KSEDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILG 113
Query: 96 QAKSGLGKTAVFVLSTLQQL-----DPVQGEVSVVVLCNARELAYQ---IRNEYLRFSKY 147
A++G GKT FV+ L++L P G V +++ RELA Q + N+ +F K+
Sbjct: 114 AARTGSGKTLAFVIPILEKLHRERWSPEDG-VGCIIISPTRELAAQTFGVLNKVGKFHKF 172
Query: 148 MPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR-LKALVRDKHIDLSHVKNFVID 206
+ GG E +D+ ++ +I+V PGR L+ + + + ++ ++D
Sbjct: 173 ----SAGLLIGGRE---GVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILD 225
Query: 207 ECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA- 265
E D+VL+ + + I P+ +Q ++FSAT +++++ + R L++P I V EA
Sbjct: 226 EADRVLDSA-FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAV 284
Query: 266 KLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN--ASNFP 323
T L Q + + ++K L + +++++F+ + + + + N P
Sbjct: 285 TATPTSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIP 344
Query: 324 AITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIER-INLAINYDMPNEADQYL 382
++HG M QE+R+ Y F E + + TDV RG+D ++ ++ + D P + Y+
Sbjct: 345 LKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYI 403
Query: 383 HRVGRAGRFGTKGLAISMISSEDDEQVLAKIQE 415
HRVGR RF T+G ++ + + +E+++ K+QE
Sbjct: 404 HRVGRTARFYTQGKSL-LFLTPSEEKMIEKLQE 435
>7299006 [A] KOG0345 ATP-dependent RNA helicase
Length = 613
Score = 136 bits (343), Expect = 5e-32
Identities = 118/398 (29%), Positives = 196/398 (48%), Gaps = 39/398 (9%)
Query: 61 KPELSRAIIDC----GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD 116
KP LS A++ GF+ + VQ IP + DV +A +G GKT F++ L+ L
Sbjct: 11 KPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQ 70
Query: 117 PVQGE-------VSVVVLCNARELAYQIRNEYLRFSKY--MPDVKTAVFYGGTEYKNDID 167
E + +V+ RELA QI +F ++ + + + GG + DI
Sbjct: 71 RRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIA 130
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKHIDLS---HVKNF---VIDECDKVLEELDMRRDV 221
L ++ET P I+V TPGRL+ L + K DL+ VK+ V+DE D++L+ L + V
Sbjct: 131 TL-RRET-PCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLD-LGFKTSV 187
Query: 222 QDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
+I PR ++ +FSAT + E+ + R L+NP+ + V ++A + Q + ++ E
Sbjct: 188 NNILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVE 247
Query: 282 KEKNRKLAQLLDDLE-----FNQVIIFVKSTVR----ANELTKLLNASNFPAITVHGHMK 332
E K LL+ L +V++F + A L LL + +HG MK
Sbjct: 248 PEL--KFVALLEFLSSPATVIGKVMVFFPTCACVEYWAEALPPLLPKRT--VLGIHGKMK 303
Query: 333 QEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
+ R + F+ + + + TDV RG+D+ I + +D P+ A ++HRVGR R G
Sbjct: 304 NK-RANVVEKFRNTPQAVLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQG 362
Query: 393 TKGLA-ISMISSEDDEQVLAKIQERFDVK--ITEFPEE 427
+G A + ++ SED KI ++ ++ +TE E+
Sbjct: 363 NEGNALVFLLPSEDAYVHFLKINQKVELTKLLTEEAED 400
>SPBC24C6.02 [A] KOG0345 ATP-dependent RNA helicase
Length = 606
Score = 135 bits (341), Expect = 9e-32
Identities = 104/397 (26%), Positives = 186/397 (46%), Gaps = 23/397 (5%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F+ + L A+ GF+ + VQ + IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 115 L---DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVK------TAVFYGGTEYKND 165
+ D + + +++ RELA QI N Y PD A Y G +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIF 225
DL S +E P +++ TPGRL ++ HI H++ ++DE D +++ + +R +Q I
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEILILDEADTLID-MGFQRTLQSII 179
Query: 226 RATPRDKQVMMFSATLSQEIRPICR-RFLQNPLEIFVDDEAKL----TLHGLQQYYIKLN 280
P+ ++ +FSAT++ + + L+N + + V +K T L + +
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIP 239
Query: 281 EKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFP--AITVHGHMKQEERIA 338
K + + LL +E+ + I+F S L P + +HG Q R
Sbjct: 240 PIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSR 299
Query: 339 RYKAFKEFEKR-ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397
++ FK+ K+ + +TD+ RG+DI ++ + D P + + HR GRAGR G G+A
Sbjct: 300 NFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVA 359
Query: 398 ISMISSEDDEQVLAKIQERFDVKIT--EFPEEGVDPS 432
I +++ +E+ ++ R V IT + P E +D S
Sbjct: 360 IVLLNDGREEEYEELLRVR-KVPITRIDTPIEALDLS 395
>Hs13787209 [A] KOG0331 ATP-dependent RNA helicase
Length = 715
Score = 135 bits (341), Expect = 9e-32
Identities = 103/394 (26%), Positives = 194/394 (49%), Gaps = 27/394 (6%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F +F + E + + G +Q T G D++ QA++G GKT F + +++
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179
Query: 115 L-----DPVQGEV-SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDL 168
L D +G V+VL RELA Q+ + FS + A FYGGT Y +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKD---FSDITKKLSVACFYGGTPYGGQFE- 235
Query: 169 LSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
+ I+V TPGR+K +++ +DL+ +K+ V+DE D++L+ + V++I
Sbjct: 236 --RMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLD-MGFADQVEEILSVA 292
Query: 229 PR-----DKQVMMFSATLSQEIRPICRRFLQNPLEI--FVDDEAKLTLHGLQQYYIKLNE 281
+ + Q ++FSAT + + ++++++ E + + + T ++ IK +
Sbjct: 293 YKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHW 352
Query: 282 KEKNRKLAQLLDDLEFNQ--VIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIAR 339
++ + ++ +Q IIF ++ A EL++ +A A ++HG + Q++R
Sbjct: 353 TQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQN-SAIKQDAQSLHGDIPQKQREIT 411
Query: 340 YKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAIS 399
K F+ + V+T+V RG+DI ++L I P + + Y+HR GR GR G G+ I
Sbjct: 412 LKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCIC 471
Query: 400 MISSEDDEQVLAKIQERFDVKITEFPEEGVDPST 433
+++ Q L +++++ +K F GV +T
Sbjct: 472 FYQHKEEYQ-LVQVEQKAGIK---FKRIGVPSAT 501
>At1g63250 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 798
Score = 135 bits (340), Expect = 1e-31
Identities = 103/367 (28%), Positives = 176/367 (47%), Gaps = 23/367 (6%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL----S 110
F + + P +A+ G + VQ T+ + + G D L +AK+G GK+ F+L +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 111 TLQQLDPVQG-----EVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
L+ ++ +G + ++LC RELA QI E K+ + GGT +K D
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLD 449
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKH---IDLSHVKNFVIDECDKVLEELDMRRDVQ 222
L + I++ATPGRL + +K L +K F++DE D +L+ L RRDV+
Sbjct: 450 QQRLESEPC--QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD-LGFRRDVE 506
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDD---EAKLTLHGLQQYYIKL 279
I PR +Q ++FSAT+ +E+R + + L+ ++D T ++Q I
Sbjct: 507 KIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRD-HSYIDTIGLGCVETHDKVRQSCIVA 565
Query: 280 NEKEKNRKLAQLLDDLEFN----QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEE 335
+ + LL + N ++I+F + + + + LL +H Q
Sbjct: 566 PHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLH 625
Query: 336 RIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKG 395
R FKE + I V++DV RG++ + L I +P++ +QY+HR+GR GR G G
Sbjct: 626 RTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGG 685
Query: 396 LAISMIS 402
+ +I+
Sbjct: 686 EGLLLIA 692
>At3g09620 [A] KOG0334 RNA helicase
Length = 989
Score = 135 bits (339), Expect = 2e-31
Identities = 109/391 (27%), Positives = 185/391 (46%), Gaps = 60/391 (15%)
Query: 51 HSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS 110
H TG +L + +E P +Q +P + G D + AK+G GKT FVL
Sbjct: 399 HQTGLTSKILD-----TLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLP 453
Query: 111 TLQQLD---PVQ-GEVSV-VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
L+ + PV+ G+ + +V+ REL QI ++ +FSK + + V YGG+
Sbjct: 454 MLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPV-YGGSGVAQQ 512
Query: 166 IDLLSKKETVPHIIVATPGRLKALV---RDKHIDLSHVKNFVIDECDKVLE---ELDMRR 219
I L + I+V TPGR+ ++ K +L V V+DE D++ + E + R
Sbjct: 513 ISELKRGT---EIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITR 569
Query: 220 DVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKL 279
VQ+I D+Q ++FSAT +++ + R+ L P+EI V + + Q I+
Sbjct: 570 IVQNI----RPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRP 625
Query: 280 NEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIAR 339
+ +R L L + E +V++FV+S +
Sbjct: 626 ESERFSRLLELLGEWYEKGKVLVFVRS--------------------------------Q 653
Query: 340 YKAFKEFEKRIC---VSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGL 396
K+ +F+ +C ++T V RG+D++ + L +N+D PN + Y+HRVGR GR G KG
Sbjct: 654 EKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGC 713
Query: 397 AISMISSEDDEQVLAKIQERFDVKITEFPEE 427
A++ I SEDD + + + ++ P++
Sbjct: 714 AVTFI-SEDDAKYAPDLVKALELSEQPVPDD 743
>At2g07750 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 845
Score = 135 bits (339), Expect = 2e-31
Identities = 101/375 (26%), Positives = 179/375 (46%), Gaps = 39/375 (10%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL----S 110
F + + P +A+ G + VQ T+ + + G D L +AK+G GK+ F+L +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 111 TLQQLDPVQG-----EVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
L+ ++ +G + V++LC RELA QI E K + GGT ++ D
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKH---IDLSHVKNFVIDECDKVLEELDMRRDVQ 222
L + I++ATPGRL + +K L +K F++DE D +L+ L +RDV+
Sbjct: 497 QQRLESEPC--QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD-LGFKRDVE 553
Query: 223 DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK 282
I PR +Q ++FSAT+ +E+R + + L+ D + + GL ++ ++K
Sbjct: 554 KIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKR-------DHSYIDTIGLG--CVETHDK 604
Query: 283 EKN---------------RKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITV 327
K L + ++++ ++I+F + + + + LL +
Sbjct: 605 VKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREI 664
Query: 328 HGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGR 387
H Q R FKE + I V++DV RG++ + L I +P++ +QY+HR+GR
Sbjct: 665 HARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGR 724
Query: 388 AGRFGTKGLAISMIS 402
GR G G + +I+
Sbjct: 725 TGREGKGGKGLLLIA 739
>SPAC1093.05 [A] KOG0343 RNA Helicase
Length = 735
Score = 134 bits (336), Expect = 3e-31
Identities = 103/382 (26%), Positives = 183/382 (46%), Gaps = 25/382 (6%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F + L A+ + F +E+Q+ IP ++ G D+L AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 115 L-----DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
L + G + +V+ RELA Q ++ + + + GG YK + + L
Sbjct: 101 LYRKKWTSLDG-LGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERL 158
Query: 170 SKKETVPHIIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
S+ +I+V TPGRL + + + + D S ++ ++DE D++L+ + R + I +
Sbjct: 159 SRM----NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD-MGFRTTLDAIVSSL 213
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFV-DDEAKLTLHGLQQYYIKLNEKEKNRK 287
P +Q M+FSAT ++ ++ + R LQNP I V +++ T L Q+Y+ + EK
Sbjct: 214 PVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDI 273
Query: 288 LAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITV---HGHMKQEERIARYKAFK 344
L + + I+F+ S + + + P I++ HG KQ R F
Sbjct: 274 LFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMR-PGISLLHLHGKQKQTTRTEVTAKFT 332
Query: 345 EFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSE 404
+ TD+ RG+D ++ I D P + D Y+HRVGR R+ G A+ ++
Sbjct: 333 SSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNAL-LLLLP 391
Query: 405 DDEQVLAKIQ------ERFDVK 420
+E L +++ ER +VK
Sbjct: 392 SEEAFLKRLESKKIAVERINVK 413
>SPCC1494.06c [A] KOG0346 RNA helicase
Length = 595
Score = 132 bits (331), Expect = 1e-30
Identities = 123/469 (26%), Positives = 194/469 (41%), Gaps = 94/469 (20%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ- 113
F DF L P L RAI C FE P+ VQ TIP ++ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 114 -----QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDL 168
Q+D Q + ++L RELA Q+ N + + + K F +D
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCS--KHIRFINVATNSSDTVQ 133
Query: 169 LSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
+P I++ATP R V + L +K VIDE D +L D++ + R+
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLS-FGYNEDMKTLSRSL 192
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK------ 282
PR Q + SATLS+ I + + +NP + V D K L QY +K +E+
Sbjct: 193 PRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKD--KEASGKLTQYVVKCSEQDKFLLA 250
Query: 283 ------------------EKNR-------------KLAQLLDDLEFN------------- 298
E NR K L +L N
Sbjct: 251 YILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGL 310
Query: 299 -QVIIFVKSTVRANELTKLLNASNFPAITV---------------HGHMKQEERIARYKA 342
Q+II + E+ +L N +F V + + E +A K
Sbjct: 311 YQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKD 370
Query: 343 FKEFEKRICVSTDV-FGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMI 401
+ +KR+ + RG+D E + +N+DMP+ Y+HR+GR R G G A+S +
Sbjct: 371 KSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
Query: 402 ---------------SSEDDEQVLAKIQER-FDVKITEFPEEGVDPSTY 434
S + DE VL +++++ ++ F + +D Y
Sbjct: 431 VPKSEVGKHKPTSLESCKKDESVLRRLEKKQISLQPYSFDKNQIDAFRY 479
>YDR243c [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 588
Score = 130 bits (326), Expect = 5e-30
Identities = 105/382 (27%), Positives = 190/382 (49%), Gaps = 34/382 (8%)
Query: 59 LLKPELSRAII-DCGFEHPSEVQQHTIPQSIHGT---DVLCQAKSGLGKTAVFVLSTLQQ 114
++ +L R II + F P+ +Q+ TIP + D L A +G GKT FV+ L +
Sbjct: 179 IIPRDLLRVIIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIK 238
Query: 115 LD---PVQGEVSVV------VLCNARELAYQIRNEYLRFSKYMP-----DVKTAVFYGGT 160
+ P + ++ +L REL QI+ E + +K D K GG
Sbjct: 239 MSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGH 298
Query: 161 EYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRD 220
+ LS+ I+VATPGRL + + + + V+ V+DE DK+++ L
Sbjct: 299 SLEEISFSLSEG---CDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMID-LGFEDQ 354
Query: 221 VQ------DIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPL--EIFVDDEAKLTLHGL 272
V DI + ++Q +MF+AT++ I I ++Q P+ I V+ ++ + +
Sbjct: 355 VTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQV 414
Query: 273 QQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELT-KLLNASNFPAITVHGHM 331
+Y N+++K +KL ++ + +IIF+ A+ L K +N +HG
Sbjct: 415 VEYAD--NDEDKFKKLKPIVAKYD-PPIIIFINYKQTADWLAEKFQKETNMKVTILHGSK 471
Query: 332 KQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRF 391
QE+R + F+ + +I ++T+V RG+DI ++L +N+ + + D Y+HR+GR GR
Sbjct: 472 SQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRA 531
Query: 392 GTKGLAISMISSEDDEQVLAKI 413
+G A+S +S+ +DE ++ ++
Sbjct: 532 ANEGTAVSFVSAAEDESLIREL 553
>YBR237w [A] KOG0334 RNA helicase
Length = 849
Score = 129 bits (324), Expect = 9e-30
Identities = 99/374 (26%), Positives = 175/374 (46%), Gaps = 37/374 (9%)
Query: 79 VQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSV-------VVLCNAR 131
+Q +P + G DV+ +K+G GKT ++L L+Q+ Q +S ++L R
Sbjct: 282 IQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVK-AQRPLSKHETGPMGLILAPTR 340
Query: 132 ELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGR---LKA 188
ELA QI E +F++ +++ GG+E K I L + I+VATPGR +
Sbjct: 341 ELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGT---EIVVATPGRFIDILT 397
Query: 189 LVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPI 248
L K + + V+DE D++ + L + I + DKQ ++FSAT ++R
Sbjct: 398 LNDGKLLSTKRITFVVMDEADRLFD-LGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSF 456
Query: 249 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLE--FNQV------ 300
R L +P+ I ++ + + + Q++ I +E EK L QL+ + F++V
Sbjct: 457 AVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDG 516
Query: 301 ------------IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEK 348
IIFV S + ++K L + +H +ER+ + FK +
Sbjct: 517 QSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKN 576
Query: 349 RICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED--D 406
I + T+V RG+++ ++L I Y+ QY+H GR R G AI+++ ++
Sbjct: 577 SILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSG 636
Query: 407 EQVLAKIQERFDVK 420
+L+K ++K
Sbjct: 637 AYILSKAMRDEEIK 650
>CE06239 [A] KOG0344 ATP-dependent RNA helicase
Length = 581
Score = 129 bits (324), Expect = 9e-30
Identities = 109/389 (28%), Positives = 178/389 (45%), Gaps = 39/389 (10%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D + P L + + PS +Q +IP +VL A +G GKT F L + +
Sbjct: 128 FSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDE 187
Query: 115 LDPVQ----------GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKN 164
+ ++ ++ VVL RELA Q E+L++ + A F G
Sbjct: 188 ILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFLKYCANT-SISAANFSG------ 240
Query: 165 DIDLLSKKETVPH--IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELD-----M 217
++ + H I+V+TP R+ DK ID S ++ V+DE D++ E ++
Sbjct: 241 ------EETDIQHADILVSTPNRI-VFHLDK-IDTSSLRWLVVDESDRLFEVVEGQDKCF 292
Query: 218 RRDVQDIFRATP-RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYY 276
R + I++A + +V FSAT S E+ C+ + + V + Q+
Sbjct: 293 RNQLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLT 352
Query: 277 IKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNA--SNFPAITVHGHMKQE 334
E K + LL ++FV+S RA +L KLL+A SN +++ +
Sbjct: 353 YCGTEDGKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDK 412
Query: 335 ERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTK 394
ER + F+ E + V T++ GRG+D+ + L INYD+P Y+HRVGR GR G
Sbjct: 413 ERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKS 472
Query: 395 GLAISMISSEDDEQV--LAKI--QERFDV 419
G A++ + D + + +A + Q FDV
Sbjct: 473 GHAVTYFTDADMKYIKSIATVIRQSGFDV 501
>CE03821 [A] KOG0345 ATP-dependent RNA helicase
Length = 578
Score = 129 bits (324), Expect = 9e-30
Identities = 93/355 (26%), Positives = 172/355 (48%), Gaps = 15/355 (4%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
L PEL + D ++ ++VQ + ++ +DV+ ++ +G GKT FVL ++ + +
Sbjct: 17 LGPELLE-VFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAK 75
Query: 120 ---GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVP 176
++ ++L +REL QI + F++ + ++ GG + +I + K
Sbjct: 76 LQPADIGALILSPSRELCSQIVSVIQPFAEKL-NLTVETVTGGQKVDKNIKMFKNKNV-- 132
Query: 177 HIIVATPGRLKALVRDKHIDLSH----VKNFVIDECDKVLEELDMRRDVQDIFRATPRDK 232
+I+VATPGRL +++ + ++ ++ VIDE D+ E+ +++I P+ +
Sbjct: 133 NILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADR-FNEIQFEDHMREILSCIPKQR 191
Query: 233 QVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHG-LQQYYIKLNEKEKNRKLAQL 291
+ +FSAT +E + L+N ++ V E L+ YY++ EK +
Sbjct: 192 RTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEF 251
Query: 292 LDDLEFNQVIIFVKSTVRANELTKLLNA--SNFPAITVHGHMKQEERIARYKAFKEFEKR 349
+ +++IF S K+ P VHG R ++ KAF +
Sbjct: 252 IRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNG 311
Query: 350 ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSE 404
+ +STDV RGIDI I+ I +D+P + ++HR GR R G +G A+ +I+SE
Sbjct: 312 VMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASE 366
>Hs4826688 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 439
Score = 126 bits (317), Expect = 6e-29
Identities = 96/360 (26%), Positives = 173/360 (47%), Gaps = 13/360 (3%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
+KP L +A + F+ + +Q + G ++ A +G GKT F+L L ++DP
Sbjct: 3 IKPAL-QAQFEQQFKAQTPIQAAVWEKLAQGDNIFGLAPTGTGKTLAFLLPILSRIDPKV 61
Query: 120 GEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHII 179
+ V++L ++ELA Q R + DV GG + D L K + PHI+
Sbjct: 62 KQTQVLILAPSQELAMQT-TAVAREWGALVDVSVTSLIGGANGRRQADKLKKDK--PHIV 118
Query: 180 VATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRD-VQDIFRATPRDKQVMMFS 238
V T GR+ ++ + L+ ++ + DE D +L D RRD +Q + P D Q+ +FS
Sbjct: 119 VGTLGRVLTMLDGGALKLNGLQTVIFDEADAMLS--DERRDSLQALAAQLPTDVQLGLFS 176
Query: 239 ATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFN 298
AT +++ + F Q + V +A + QY +++K K L QL + +
Sbjct: 177 ATSGVDLKYVADTFGQEVRPVSVGTDAPAAITHEFQY---VDQKAKASLLIQLARNKQ-- 231
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQE-ERIARYKAFKEFEKRICVSTDVF 357
Q ++F + + L ++ +++ + K++ +R + FK+ E + + TDV
Sbjct: 232 QALVFFNTISGLVNMQATLRHAHASVMSIGSNDKRQVQRADALRLFKKGEVSLLLVTDVA 291
Query: 358 GRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERF 417
RG+DIE + L +N +P Y+HR GR GR G G +++ + D + ++ + F
Sbjct: 292 ARGLDIEDLPLVVNAQLPQRKKTYIHRAGRTGRMGKPGRVLNLGNDHDIRDLKRELGDDF 351
>CE11190 [A] KOG0347 RNA helicase
Length = 746
Score = 126 bits (316), Expect = 7e-29
Identities = 112/443 (25%), Positives = 200/443 (44%), Gaps = 52/443 (11%)
Query: 7 EDLLEYSDNEQEVQVDNKATEVNAEG--NGESQAKDSDKKGSYVGIHSTGFKDFLLKP-E 63
E + S+N E + + +G NG++ KK + + +K F P E
Sbjct: 106 ESSAKKSENATETTTEKPKEQKKRKGGENGDTGKPKKSKKEASKKTDISAWKQFYFLPNE 165
Query: 64 LSRAIIDCGFEHPSEVQQHTIPQSIHG-TDVLCQAKSGLGKTAVF----VLSTLQQLDPV 118
+ AI GF P+E+Q +P ++ DVL A++G GKT F V L+ D
Sbjct: 166 VLEAIEQMGFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIPLVARLLESSDDS 225
Query: 119 QGEVS-------VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSK 171
Q S +++ REL QI + T++ G + K + + +
Sbjct: 226 QETESTEVRGPRALIVAPTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQ 285
Query: 172 KETVPHIIVATPGRLKALVRDKH-----IDLSHVKNFVIDECDKVLEE---LDMRRDVQD 223
+ P I+VATPGRL A++++ + +K V+DE D+++EE ++ +
Sbjct: 286 R---PDIVVATPGRLWAMMQEAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNK 342
Query: 224 IFRATPRDK-QVMMFSATLS-QEIRPICRRFLQNPLEIFVDDEAK--LTLHGLQQYYIKL 279
I + ++K Q ++FSATL+ + + + + E+ + + + L GL++ K+
Sbjct: 343 IHEESEKEKLQTLVFSATLTFAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKV 402
Query: 280 ---------------------NEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN 318
N EK+ L LL + I+FV S A L +L
Sbjct: 403 IDLTRQMGTAGCLVEARINCGNLLEKDTSLVYLLTRYP-GRTIVFVNSIDAARRLYSVLK 461
Query: 319 ASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEA 378
+ N + +H M Q++R+ + F E + + ++TDV RG+DI+ I+ I+Y +P +
Sbjct: 462 SVNIDPMILHAKMIQKQRLKNLEKFSESKNAVLLATDVAARGLDIQGIDHVIHYQVPKKV 521
Query: 379 DQYLHRVGRAGRFGTKGLAISMI 401
+ Y+HR GR R +GL + ++
Sbjct: 522 EIYIHRSGRTARASHRGLTVVLV 544
>CE11402 [A] KOG0334 RNA helicase
Length = 995
Score = 123 bits (309), Expect = 5e-28
Identities = 105/395 (26%), Positives = 179/395 (44%), Gaps = 40/395 (10%)
Query: 50 IHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL 109
+ T + + L P + + + + +Q IPQ + G DVL QA++ GKTA F L
Sbjct: 378 VRLTSWTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGL 437
Query: 110 STLQQLDPVQGEVS----------VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGG 159
+ ++ + E ++L RELA QI +E LR D+ + YG
Sbjct: 438 PIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQI-HEALRTYCQNTDIIVLLSYGQ 496
Query: 160 TEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRR 219
++ L++ I++ T GR+ HI L H++ V DE D++L+ DM++
Sbjct: 497 SDRARS---LNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFLVFDEADRLLQ--DMKK 551
Query: 220 D--------VQDI-FRATPRDKQVMMFSATLSQEIRPICRRFL-----QNPLEIFVDDEA 265
D ++D F + +Q +M SAT + + + + Q+ + V
Sbjct: 552 DPLGHLGAIIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANG 611
Query: 266 KLTLHGLQQYYIKLNEKEKNRKLAQLLDDL---EFNQVIIFVKSTVRANELTKLLNASNF 322
+L+ +++ EKN KL ++L + + IIFV+ + + L +
Sbjct: 612 RLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGM 671
Query: 323 PAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPN-----E 377
A T+HG Q+ R FK + V+TD+ RGID+ ++ IN+D+P+
Sbjct: 672 LAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQG 731
Query: 378 ADQYLHRVGRAGRFGTK--GLAISMISSEDDEQVL 410
AD ++HR GR GR G K GL +S + + D L
Sbjct: 732 ADTFIHRAGRTGRTGRKENGLCVSFVDPQSDRDSL 766
>CE29052 [A] KOG0335 ATP-dependent RNA helicase
Length = 1156
Score = 122 bits (307), Expect = 8e-28
Identities = 98/399 (24%), Positives = 190/399 (47%), Gaps = 30/399 (7%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
GFK +L +L + P+ +Q+ + +HG DV+ A +G GKT F++ +
Sbjct: 739 GFK--ILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVI 796
Query: 114 QL--------DPVQGEVS--VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYK 163
+L D + S ++++ REL Q + + Y +K + +GG
Sbjct: 797 KLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLT-YETGLKCGLAFGGYSRN 855
Query: 164 NDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQD 223
++ L + +I+VAT GRL+ V + LS +K V+DE D++++ D +V
Sbjct: 856 ANVQHLRSFSQL-NILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSK 914
Query: 224 IFRAT-PRDKQVMMFSATLSQEIRPI-CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
I + R +Q ++FSA+ S++++ +F++ + D+ + Q + +
Sbjct: 915 IIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPR 974
Query: 282 KEKNRKLAQLLD------------DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHG 329
EK + +LL +E + +IFV S + L L++++ I++H
Sbjct: 975 TEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHS 1034
Query: 330 HMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMP--NEADQYLHRVGR 387
+ QE+R F+ + + V+++V RG++I ++ +NYDMP N D+Y++R+GR
Sbjct: 1035 YQNQEQRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGR 1094
Query: 388 AGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPE 426
GR G G + + + E+D ++ + + E PE
Sbjct: 1095 TGRAGFTGTSTAFVDVENDTDIIPCLVSILNEAKKEVPE 1133
>Hs20548087 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 344
Score = 122 bits (306), Expect = 1e-27
Identities = 84/282 (29%), Positives = 141/282 (49%), Gaps = 17/282 (6%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D L L I G E PS +QQ I I G V+ QA+SG GK A F +S L Q
Sbjct: 79 FDDMNLLESLLHGIYAYGSEKPSAIQQRAILPCIRGYVVIVQAQSGTGKMATFSISILHQ 138
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
++ + + I+ + +M D GGT ++ L +
Sbjct: 139 IE-----------LDVKATQALIQKVVIALGDHM-DASCHTCIGGTNVHAEVQKLQME-- 184
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQV 234
PHIIV TPG + ++ +++ ++K FV+D+ D++L + + IF+ + QV
Sbjct: 185 APHIIVGTPGHVFDMLNWRYLSPKYIKMFVLDKTDEMLSH-GFKDQIYGIFQELNSNTQV 243
Query: 235 MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKE-KNRKLAQLLD 293
++ SAT+ ++ + ++F++ + I V E +LTL G+ Q+YI + +E K L L +
Sbjct: 244 VLPSATMPSDVLEVTKKFMREHIWILVKKE-ELTLEGICQFYINMEREEWKLDTLGDLYE 302
Query: 294 DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEE 335
L Q +IF+ + +A+ LTK ++A +F +HG M Q+E
Sbjct: 303 TLTIAQAVIFLNTRRKADWLTKKMHAQDFTVSAMHGDMDQKE 344
>ECU05g1270 [A] KOG0331 ATP-dependent RNA helicase
Length = 426
Score = 122 bits (305), Expect = 1e-27
Identities = 101/358 (28%), Positives = 178/358 (49%), Gaps = 50/358 (13%)
Query: 75 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELA 134
HP++VQ+ IP + G V +++G GKT +VL + L+ G+ ++V+ REL
Sbjct: 78 HPTDVQRFVIPYILAGEGVDVISETGSGKTLSYVLPHIHLLE--SGDKRLLVIVPTRELV 135
Query: 135 YQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPH---IIVATPGRLKALVR 191
Q+ + +FS+ + + E ++ + S++ V + ++TPGRL+ L+
Sbjct: 136 SQVGQVFRKFSEGLLRI--------VEITGEVSIESQRLQVSRPFDVAISTPGRLRELLE 187
Query: 192 DKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRR 251
K I + V+DE D++++ D+R DV I + + FSAT + R
Sbjct: 188 LKSI--GGFEYVVVDEADRLMQH-DIRSDVTFILERM-KPEVASFFSATPFEWSGGT--R 241
Query: 252 FLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLL---------------DDLE 296
L + + D ++++++ + +KEK + L ++L + LE
Sbjct: 242 ILVGNVSVGRD---------VEEFFMYVEKKEKMQVLGEILVSCEGWLAKNMGVDRNGLE 292
Query: 297 FNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDV 356
++I+F S L K + +H +ER A +A E E+ + ++TD+
Sbjct: 293 VKKIIVFCNSIRTCENLHKRFRQ----LLVLHSRRTMQERKAVIEAL-EGERAVLIATDL 347
Query: 357 FGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
GRGIDI+ ++L +NYD+P D Y+HR GR GR KG+A+SMI ED E +L K++
Sbjct: 348 GGRGIDIKDVDLVVNYDLPRAVDGYVHRCGRTGR-QRKGMALSMICREDRE-ILPKLK 403
>At4g34910 [A] KOG0346 RNA helicase
Length = 626
Score = 121 bits (304), Expect = 2e-27
Identities = 116/466 (24%), Positives = 203/466 (42%), Gaps = 63/466 (13%)
Query: 15 NEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIIDCGFE 74
N + V KA EV + N Q ++ ++ + F++ L L RA+ G E
Sbjct: 13 NSEVVDEVEKAEEVEEQRNDREQEEEQKEEEA-----PKSFEELGLDSRLIRALTKKGIE 67
Query: 75 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL---DPVQGEV---SVVVLC 128
P+ +QQ IP + G DV+ +AK+G GKT ++L LQ+L D V + S +L
Sbjct: 68 KPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILV 127
Query: 129 NARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKA 188
+REL Q+ E + AV T + D+ + +P I+V+TP +
Sbjct: 128 PSRELCQQVYTEVSSLIELCRVQLKAVQL--TSSMSASDMRNALAGLPEILVSTPACIPK 185
Query: 189 LVRDKHIDLSHVKN----FVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQE 244
++ + V V+DE D +L +++ + PR Q ++ SAT S +
Sbjct: 186 CFAAGVLEPTAVSESLSILVLDEADLLLS-YGYEDNLRSVTSIIPRRCQCLLMSATTSSD 244
Query: 245 IRPICRRFLQNPLEIFV---DDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLD-DLEFNQV 300
+ + + L NP+ + + +D+ + +QQ++I + ++K + LL ++ ++
Sbjct: 245 VEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKI 304
Query: 301 IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAF----------------- 343
+IF+ + L L + ++G + Q R+ + F
Sbjct: 305 LIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQT 364
Query: 344 ---------------KEFEKRICVSTDV-FG--RGIDIERINLAINYDMPNEADQYLHRV 385
K+ KR D FG RGID ++++ IN+DMP Y+HR+
Sbjct: 365 KKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRI 424
Query: 386 GRAGRFGTKGLAISMISS------EDDEQVLAKIQERFDVKITEFP 425
GR GR + G ++S+IS ED + LA + + IT FP
Sbjct: 425 GRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKDIDIITPFP 470
>YDR194c [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 664
Score = 120 bits (302), Expect = 3e-27
Identities = 109/417 (26%), Positives = 193/417 (46%), Gaps = 51/417 (12%)
Query: 59 LLKPELSRAIIDCGFEHPSEVQQHTIPQ--SIHGTDVLCQAKSGLGKTAVFVLSTLQQLD 116
+L E+ +AI F + VQQ TI S DV+ +AK+G GKT F++ Q L
Sbjct: 112 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLI 171
Query: 117 PVQGE----VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAV---FYGGTEYKNDIDLL 169
+ + V V++ R+LA QI E + +K GGT+++ ++ +
Sbjct: 172 NTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 231
Query: 170 SKKETVPHIIVATPGRL-KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIF--- 225
+K P+I++ATPGRL L + + V V+DE D++LE + R D++ I
Sbjct: 232 NKLR--PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE-IGFRDDLETISGIL 288
Query: 226 ----RATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVD--DEAKLTLHGLQQYYIKL 279
+ + + ++FSATL +++ + + +F+D D+ + H + +
Sbjct: 289 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 348
Query: 280 NEKEKNRKLAQL------LDDLEFN-QVIIFVKSTVRANELTKLLN---ASNFPAITVHG 329
+EK N A + + + + N + IIF + + L +L + P + HG
Sbjct: 349 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 408
Query: 330 HMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAG 389
+ Q +R + K FK+ E I V TDV RG+D ++ + +P+E Y+HR+GR
Sbjct: 409 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 468
Query: 390 RFGTKGLAISMISS---------EDDEQVLAKIQERFDVK----------ITEFPEE 427
R G +G ++ I ED + ++ QE+++ +TE PE+
Sbjct: 469 RSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPED 525
>Hs9506931 [A] KOG0346 RNA helicase
Length = 547
Score = 120 bits (301), Expect = 4e-27
Identities = 95/400 (23%), Positives = 177/400 (43%), Gaps = 43/400 (10%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
GF+ L P L +A+ D G+ P+ +Q+ IP ++ G D+L +A++G GKTA + + LQ
Sbjct: 8 GFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 114 QL-------DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMP-DVKTAVFYGGTEYKND 165
L V+ V +VL +ELA Q ++ + + Y DV+ A + +
Sbjct: 68 LLLHRKATGPVVEQAVRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQ 127
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDL-SHVKNFVIDECDKVLEELDMRRDVQDI 224
+L +K P ++V TP R+ + ++ + L ++ V+DE D +L +++ +
Sbjct: 128 RAVLMEK---PDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEAD-LLFSFGFEEELKSL 183
Query: 225 FRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEK 284
PR Q + SAT +++++ + L NP+ + + + LQQ+ + +E
Sbjct: 184 LCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEED 243
Query: 285 NRKLAQLLDDLEF--NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKA 342
L L L + ++FV + R+ L L + P ++G + R
Sbjct: 244 KFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPTCVLNGELPLRSRCHIISQ 303
Query: 343 FKE--FEKRICVSTDVFG-------------------------RGIDIERINLAINYDMP 375
F + ++ I +V G RGID ++ +N+D+P
Sbjct: 304 FNQGFYDCVIATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLP 363
Query: 376 NEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQE 415
+ Y+HR GR R G+ ++ + + L KI+E
Sbjct: 364 PTPEAYIHRAGRTARANNPGIVLTFVLPTEQFH-LGKIEE 402
>Hs8922976 [A] KOG0330 ATP-dependent RNA helicase
Length = 540
Score = 120 bits (300), Expect = 5e-27
Identities = 100/395 (25%), Positives = 184/395 (46%), Gaps = 41/395 (10%)
Query: 55 FKDFLLKPELSRAIIDCGFE--HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTL 112
F D L+P + A+ + E P+ VQ TIP + G V+C A++G GKT ++L L
Sbjct: 128 FADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLL 187
Query: 113 QQL--DPVQGEVSV-----VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKND 165
Q+L P + + +VL +RELA Q+R + + + GG +
Sbjct: 188 QRLLGQPSLDSLPIPAPRGLVLVPSRELAQQVRAVAQPLGRSL-GLLVRDLEGGHGMRR- 245
Query: 166 IDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMR------- 218
I L ++ ++VATPG L ++ + I L + V+DE D +L+E +
Sbjct: 246 IRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILE 305
Query: 219 --------RDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL--T 268
D++D F Q+++ AT + + + + + +P + +KL
Sbjct: 306 KSHIAEGPADLEDPFNPKA---QLVLVGATFPEGVGQLLNK-VASPDAVTTITSSKLHCI 361
Query: 269 LHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQ-------VIIFVKSTVRANELTKLLNASN 321
+ ++Q +++L +K +L +L + + V++F S+ N L +L+
Sbjct: 362 MPHVKQTFLRLKGADKVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDHK 421
Query: 322 FPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQY 381
+ + G M R+ +++F++ + I + TD+ RG+D + L +NYD P Y
Sbjct: 422 IQHLRLQGQMPALMRVGIFQSFQKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDY 481
Query: 382 LHRVGRAGRFGTK--GLAISMISSEDDEQVLAKIQ 414
+HR GR GR G++ G IS ++ D ++ KI+
Sbjct: 482 IHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIE 516
>At3g16840 [A] KOG0347 RNA helicase
Length = 833
Score = 119 bits (299), Expect = 7e-27
Identities = 109/419 (26%), Positives = 179/419 (42%), Gaps = 78/419 (18%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIH-GTDVLCQAKSGLGKTAVFVLSTLQQL--- 115
L P L ++I F+ P+++Q+ + + G DV+ A++G GKT F L LQ+L
Sbjct: 198 LHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDE 257
Query: 116 -----------------DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYG 158
G + +++ RELA Q+ E+L + VK G
Sbjct: 258 REKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV-TEHLENAAKNLSVKVVPIVG 316
Query: 159 GTEYKNDIDLLSKKETVPHIIVATPGRLKALVR--DKH-IDLSHVKNFVIDECDKVLEEL 215
G + L +K P I+VATPGRL L+ +KH ++L + FV+DE D+++E
Sbjct: 317 GMFSEKQERRLKEK---PEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERG 373
Query: 216 DMRRDVQDIFRATP------------------------RDKQVMMFSAT--LSQEIRPIC 249
R ++Q I P + +Q +FSAT LS + R
Sbjct: 374 HFR-ELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKL 432
Query: 250 RRFLQ----------NPLEIFVD-------------DEAKLTLHGLQQYYIKLNEKEKNR 286
+R N +E+ + + +++ +IK EKEK+
Sbjct: 433 KRGSSKSKQSSSGEVNSIEVLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDA 492
Query: 287 KLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEF 346
L +L + I+F S ++ LL T+ MKQ R+ F+
Sbjct: 493 YLYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRAS 552
Query: 347 EKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
E I ++TD+ RGIDI+ + I+Y +P+ A+ Y+HR GR R G +I++I +
Sbjct: 553 ENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNE 611
>Hs17505907 [A] KOG0348 ATP-dependent RNA helicase
Length = 851
Score = 119 bits (297), Expect = 1e-26
Identities = 99/400 (24%), Positives = 187/400 (46%), Gaps = 61/400 (15%)
Query: 77 SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS------VVVLCNA 130
+ VQ+ +IP + G D L ++++G GKT + + +Q L ++ ++ +VL
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 131 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALV 190
RELA Q + + K + V GG + K++ L K +I+++TPGRL +
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKG---INILISTPGRLVDHI 371
Query: 191 RD-KHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD---KQVMMFSATLSQEIR 246
+ K+I S ++ V DE D++L +L +D+ I A + +Q ++ SATL++ +
Sbjct: 372 KSTKNIHFSRLRWLVFDEADRIL-DLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVT 430
Query: 247 PICRRFLQNPLEIFVDDEAKLTLH-------------------------GLQQYYIKLNE 281
+ L +P+ I V D++ L+ L+Q+ +
Sbjct: 431 RLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPS 490
Query: 282 KEKNRKLAQ-LLDDLEFNQ---VIIFVKSTVRAN-----ELTKLLNASNFPA-------- 324
K + LA +L +F + +++F S L LL++S PA
Sbjct: 491 KLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSAS 550
Query: 325 -----ITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEAD 379
+ +HG M+QEER A ++ F + + + TDV RG+D+ ++ + Y+ P+
Sbjct: 551 MRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPA 610
Query: 380 QYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDV 419
+Y+HR+GR R G G ++ +++ + E V + + +V
Sbjct: 611 EYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINV 650
>Hs17475661 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 240
Score = 117 bits (294), Expect = 3e-26
Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 52/229 (22%)
Query: 176 PHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM 235
PHII+ TPGR+ ++ +++ ++K FV+DE D++L + + DIF+ + QV+
Sbjct: 60 PHIIMGTPGRVSDMLNWRYLSPKYIKMFVLDEADEMLSHR-FKDQICDIFQMLNSNTQVV 118
Query: 236 MFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL 295
+ SAT+ ++ + ++F+++P+ I
Sbjct: 119 LLSATIPSDVLEVTKKFMRDPIRIL----------------------------------- 143
Query: 296 EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTD 355
V+ ELT +F +HG M Q+ER + ++ R+ ++TD
Sbjct: 144 ------------VKKEELT----LKDFTVSAMHGDMDQKERDVVMREYRSGSSRVLITTD 187
Query: 356 VFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSE 404
+ RGID+++++L INYD P + Y+HR+GR G+FG KG+AI+M++ +
Sbjct: 188 LLPRGIDVQQLSLVINYDPPTNRENYIHRIGRGGQFGHKGVAINMVAED 236
>Hs20551983 [A] KOG0345 ATP-dependent RNA helicase
Length = 325
Score = 116 bits (290), Expect = 8e-26
Identities = 88/308 (28%), Positives = 149/308 (47%), Gaps = 26/308 (8%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL---- 115
L P++ A+ + GF + + VQ TIP + DV +A +G GKT FV+ L+ L
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 116 -DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKET 174
+ +V +++ RELA QI F+K+ P+ ++ GG D++ K+
Sbjct: 76 EKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERF--KQQ 133
Query: 175 VPHIIVATPGRLKALVRDK--HIDLS----HVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
+IIVATPGRL+ + R K +DL+ + V+DE D++L ++ + I
Sbjct: 134 GGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLL-DMGFEASINTILEFL 192
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDE------AKLTLHGLQQYYIKLNEK 282
P+ ++ +FSAT +QE+ + R L+NP+ + V ++ A+ T L+ YY+
Sbjct: 193 PKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKAD 252
Query: 283 EKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLN--ASNFPAITVHGHMKQEERIARY 340
EK +L L + + + ++F + K L + +HG MK + R
Sbjct: 253 EKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMKYK----RN 308
Query: 341 KAFKEFEK 348
K F EF K
Sbjct: 309 KIFMEFRK 316
>CE26264 [A] KOG0335 ATP-dependent RNA helicase
Length = 328
Score = 116 bits (290), Expect = 8e-26
Identities = 68/215 (31%), Positives = 113/215 (51%), Gaps = 4/215 (1%)
Query: 195 IDLSHVKNFVIDECDKVLE---ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRR 251
I + + V+DE D++L+ E +R+ V+ + ++ MFSAT +EI+ + +
Sbjct: 6 IGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQD 65
Query: 252 FLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDL-EFNQVIIFVKSTVRA 310
FL+ T + Q + + E EK L LLD + + ++FV++ A
Sbjct: 66 FLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGA 125
Query: 311 NELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAI 370
++L LN N+ +T+HG +KQ ER F+ I V+T V RG+DI + I
Sbjct: 126 SDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVI 185
Query: 371 NYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
NYD+P++ D+Y+HR+GR GR G GLA S + ++
Sbjct: 186 NYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKN 220
>7295505 [A] KOG0346 RNA helicase
Length = 560
Score = 115 bits (288), Expect = 1e-25
Identities = 97/385 (25%), Positives = 163/385 (42%), Gaps = 34/385 (8%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ- 113
F + L + +A+ G++ P+ +Q IP + G DV+ +A++G GKTA + L +Q
Sbjct: 11 FHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQK 70
Query: 114 ----QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
+L+ + VS VVL ++L Q R + + V +
Sbjct: 71 ILNSKLNASEQYVSAVVLAPTKKLCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQRH 130
Query: 170 SKKETVPHIIVATPGRLKALVR-DKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRAT 228
+ E+ P I+VATP L A +DL HV+ V+DE D V +D + + +
Sbjct: 131 ALSES-PDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVF-AYGYEKDFKRLIKHL 188
Query: 229 PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKL 288
P Q ++ SATL+ ++ + L NP+ + +++ + L I E +K L
Sbjct: 189 PPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAIL 248
Query: 289 AQLLD-DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFE 347
LL L + IIFV S R ++ L A ++ + RI F +
Sbjct: 249 YALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGT 308
Query: 348 KRICVSTDVF-------------------------GRGIDIERINLAINYDMPNEADQYL 382
I +++D RGID + +N IN+D P + Y+
Sbjct: 309 YDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYI 368
Query: 383 HRVGRAGRFGTKGLAISMISSEDDE 407
HR GR R KG +S +S ++ +
Sbjct: 369 HRAGRTARGNNKGSVLSFVSMKESK 393
>At1g12770_1 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 543
Score = 115 bits (287), Expect = 2e-25
Identities = 94/418 (22%), Positives = 177/418 (41%), Gaps = 61/418 (14%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F++ L L ++ GF P++VQ +P I G D + Q+ +G GKT ++L L +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 115 LDPV-------------QGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTE 161
+ P+ + E+ +++ +REL QI E + + GG
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
Query: 162 YKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDV 221
+ L K + P I+V TPGR+ + + + + V+DE D++L + R D+
Sbjct: 232 RMRQEEALKKNK--PAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLS-FNFREDI 288
Query: 222 QDIFR-------ATPR-------DKQVMMFSATLSQEIRPICRRFLQNPLEIFV------ 261
I A P+ ++Q ++ SAT+ + + + P+ +
Sbjct: 289 HRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPL 348
Query: 262 -------------------DDEAKLTLHGL----QQYYIKLNEKEKNRKLAQLLDDLEFN 298
D + + T+ L + YY + K L + + L+
Sbjct: 349 DTVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQ 408
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
VI F+ + + ++ L A + +HG + + R K FK E ++ V+ ++
Sbjct: 409 SVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSA 468
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQER 416
RG+D+ +L +N ++P +A Y HR GR GR G KG +++ E+ + + K E+
Sbjct: 469 RGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTV--CEESQVFIVKKMEK 524
>SPAC22F3.08c [A] KOG0344 ATP-dependent RNA helicase
Length = 481
Score = 113 bits (282), Expect = 6e-25
Identities = 85/333 (25%), Positives = 148/333 (43%), Gaps = 6/333 (1%)
Query: 79 VQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD-PVQGEVSVVVLCNARELAYQI 137
+Q++ IP D+L A +G GKT ++ LQ+L V G +++ REL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 138 RNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDL 197
Y + K + + + K + + TP RL ++ +
Sbjct: 132 ---YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSF 187
Query: 198 SHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPL 257
V+ FV+DE D++ E + + + T + +FSAT+ + + + +P+
Sbjct: 188 EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPI 247
Query: 258 EIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFN-QVIIFVKSTVRANELTKL 316
I V + T Q+ ++ K L Q++ + E +V+IFV+ RA L
Sbjct: 248 RIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTE 307
Query: 317 LNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPN 376
L +HG + Q +R F++ E + ++TD+ RGID + + IN+D P
Sbjct: 308 LLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQ 367
Query: 377 EADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
Y+HR+GR GR G G A++ + ED E +
Sbjct: 368 SVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYI 400
>Hs9966805 [A] KOG0347 RNA helicase
Length = 859
Score = 113 bits (282), Expect = 6e-25
Identities = 86/312 (27%), Positives = 150/312 (47%), Gaps = 38/312 (12%)
Query: 125 VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPG 184
+VL RELA Q++ +++ +KTA+ GG + +L+++ P I+VATPG
Sbjct: 391 LVLTPTRELAVQVKQHIDAVARFT-GIKTAILVGGMSTQKQQRMLNRR---PEIVVATPG 446
Query: 185 RLKALVRDKHIDLSHVKNF---VIDECDKVLE-----ELDMRRDVQDIFRATPRDKQVMM 236
RL L+++KH L +++ V+DE D+++E EL ++ + + P+ +Q ++
Sbjct: 447 RLWELIKEKHYHLRNLRQLRCLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPK-RQTLV 505
Query: 237 FSATLSQEIRPICRRFLQNPLEIFVDDEAKL-----------------------TLHGLQ 273
FSATL+ + R L +D AKL T+ L
Sbjct: 506 FSATLTL-VHQAPARILHKKHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLT 564
Query: 274 QYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQ 333
+ I EK+ L L + ++F S L+ LL + +T+H M Q
Sbjct: 565 ETKIHCETDEKDFYLYYFLMQYP-GRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQ 623
Query: 334 EERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGT 393
++R+ + F E + ++TDV RG+DI ++ I+Y +P ++ Y+HR GR R
Sbjct: 624 KQRLRNLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATN 683
Query: 394 KGLAISMISSED 405
+GL++ +I ED
Sbjct: 684 EGLSLMLIGPED 695
>Hs9506609 [A] KOG0340 ATP-dependent RNA helicase
Length = 257
Score = 113 bits (282), Expect = 6e-25
Identities = 86/261 (32%), Positives = 131/261 (49%), Gaps = 14/261 (5%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
GF + L L G + P+ VQ IP + G D L AK+G GKTA FVL LQ
Sbjct: 3 GFAELGLSSWLVEQCRQLGLKKPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 114 QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKE 173
+L + +VL RELAYQI + K + +K + GG + LS+K
Sbjct: 63 KLSEDPYGIFCLVLTPTRELAYQIAERFRVLGKPL-GLKDCIIVGGMDMVAQALELSRK- 120
Query: 174 TVPHIIVATPGRLKALVRDKH-IDLSHVKNFVIDECDKVLEE--LDMRRDVQDIFRATPR 230
PH+++ATPGRL +R + + ++ V+DE D++LE+ D D++ I A P
Sbjct: 121 --PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPA 178
Query: 231 DKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL-TLHGLQQYYIKLNEKEKNRKLA 289
+Q ++FSATL+ +R + P F + +A + T+ L Q Y+ + EK K+ L
Sbjct: 179 RRQTLLFSATLTDTLRELQGLATNQP--FFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLV 236
Query: 290 QLL----DDLEFNQVIIFVKS 306
L+ D+ E +IIF +
Sbjct: 237 HLIQRFQDEHEDWSIIIFTNT 257
>At2g40700 [A] KOG0348 ATP-dependent RNA helicase
Length = 609
Score = 112 bits (279), Expect = 1e-24
Identities = 116/481 (24%), Positives = 197/481 (40%), Gaps = 107/481 (22%)
Query: 35 ESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAIID-CGFEHPSEVQQHTIPQSIHGTDV 93
+ +AKD+ K S + S F L +LS + + GFE P+ VQ IP + G DV
Sbjct: 12 KQEAKDASKAKSGL-FASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDV 70
Query: 94 LCQAKSGLGKTAVFVLSTLQQLDPVQGEVS------VVVLCNARELAYQIRNEYLRFSKY 147
L A +G GKT ++ + L +V +V+ REL Q+ +
Sbjct: 71 LVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHR 130
Query: 148 MPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKN----- 202
+ GG + + L K + I++ATPGRL L H+KN
Sbjct: 131 FHWIVPGYVMGGEKKAKEKARLRKGIS---ILIATPGRL----------LDHLKNTASFV 177
Query: 203 ------FVIDECDKVLEELDMRRDVQDIFRA--------------TPR--DKQVMMFSAT 240
+ DE D +LE L ++++ I + P+ KQ ++ SAT
Sbjct: 178 HKNLRWVIFDEADSILE-LGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSAT 236
Query: 241 LSQEIRPICRRFLQNPLEIFVD------------------DEAKLTLH------------ 270
L+ ++ + + L +P+ I +D D + +H
Sbjct: 237 LNDKVNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDY 296
Query: 271 ----GLQQYYIKLNEKEKNRKLAQLLDDL----EFNQVIIFVKSTVRANELTKLLNASNF 322
L Q Y+++ + L +L +L +V++F + + LL+ +
Sbjct: 297 GIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQW 356
Query: 323 P------------------AITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIE 364
P +HG M+QE+R + + FK ++ + +STDV RG+D
Sbjct: 357 PPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFP 416
Query: 365 RINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEF 424
++ I YD P EA +Y+HRVGR R G KG A+ + + + + K ++ +TE+
Sbjct: 417 KVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYL--KELKKHGASLTEY 474
Query: 425 P 425
P
Sbjct: 475 P 475
>Hs17474878 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 645
Score = 109 bits (273), Expect = 7e-24
Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 24/266 (9%)
Query: 178 IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMF 237
I++ATPG L ++ ++++ LS V+DE D++++ + DVQ I P+ +
Sbjct: 385 IVIATPGHLIDVLENRYLVLSCCTYVVLDEADRMID-VGFEPDVQKILEHMPQSEARHDE 443
Query: 238 SATLSQEIRPICRRFLQNPLEIFVDDEA-KLTLHGLQQYYIKLNEKEKNRKLAQLLDDLE 296
S ++P ++ + E+ K H + ++E EK +KL ++L
Sbjct: 444 S---------------EDPEKMLANFESGKRKPHERVEQVFLMSESEKRKKLLEILKQGF 488
Query: 297 FNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDV 356
+ IFV + L K L + A T+HG QE+R K K + V+TDV
Sbjct: 489 DPAITIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKPGAKDVLVTTDV 548
Query: 357 FGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDD-------EQV 409
G GIDI+ +++ +NYDM D Y+HR+GR G+ G G+AI+ ++ ED + +
Sbjct: 549 AGHGIDIQDVSMVVNYDMAKNIDDYIHRIGRMGQAGKSGVAITFLTKEDSAVFYELKQAI 608
Query: 410 LAKIQERFDVKITEFPEEGVDPSTYL 435
L K+ P+ P T L
Sbjct: 609 LESPVSSCPPKLANHPDAQHKPGTIL 634
>YLR276c [A] KOG0346 RNA helicase
Length = 594
Score = 108 bits (270), Expect = 2e-23
Identities = 109/451 (24%), Positives = 198/451 (43%), Gaps = 86/451 (19%)
Query: 44 KGSYVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSI-HGTDVLCQAKSGLG 102
+G+Y+ ST F+ F L L +AI + GF++P+ +Q H IP ++ D++ +A +G G
Sbjct: 9 EGAYID-DSTTFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSG 67
Query: 103 KTAVFVLSTLQQL--------DPVQGEVSVVVLCNARELAYQIRNEYLRFSKY-MPDVKT 153
KT +++ ++ + + + ++L RELA Q+ N + Y D++T
Sbjct: 68 KTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRT 127
Query: 154 AVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDK--HIDLSHVKNFVIDECDKV 211
+ +D L + P IIV TPG+L L++ K I L+ +K V+DE D V
Sbjct: 128 LNI---SSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLV 184
Query: 212 LEELDMRRDVQDIFRATPRDK--QVMMFSATLSQEIRPICRRFLQNPLEI-FVDDEAKLT 268
L + D+ I P K Q + SATL+ +I+ + ++F ++P + F D+E
Sbjct: 185 L-TFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKN 243
Query: 269 LHGLQQYYIKLNEKEKNRKLAQLLD-DLEFNQVIIFVKSTVRANELTKLLNASNFPAITV 327
+ L QYY+K++E +K + +L + +IFV + R L ++ + +
Sbjct: 244 QNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQFGIKSCIL 303
Query: 328 HGHMKQEERIARYKAFKEFEKRICVSTD-------------------------------- 355
+ + R F + ++ ++TD
Sbjct: 304 NSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPEN 363
Query: 356 ----------------VFGRGIDIERINLA--INYDMPNEADQYLHRVGRAGRFGTKGLA 397
+G ++ N+A +N+D+P A Y+HRVGR R G G A
Sbjct: 364 DKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTA 423
Query: 398 ISMI---------------SSEDDEQVLAKI 413
IS + +++ DE++L++I
Sbjct: 424 ISFVVPLKEFGKHKPSMLQTAKKDERILSRI 454
>CE27728 [A] KOG0346 RNA helicase
Length = 634
Score = 108 bits (270), Expect = 2e-23
Identities = 101/431 (23%), Positives = 181/431 (41%), Gaps = 64/431 (14%)
Query: 51 HSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLS 110
H T F DF L + ++I + G+E ++VQ+ I ++ +++ +A++G GKT F++
Sbjct: 88 HKT-FADFGLDERILKSIGELGWEKANQVQESVISLALENKNIMGRARTGSGKTGAFLIP 146
Query: 111 TLQQL----DPVQGEV--SVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKN 164
+Q+L G V S V++ +EL QI +++ S+ +P ++ E +N
Sbjct: 147 LVQKLIAESKTNDGSVGPSAVIIAPTKELITQIYKLFVKLSQALPFLQAINLCDINEEEN 206
Query: 165 DIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDI 224
+ L E H++V TPG+L + + + V V+DE D +L ++ I
Sbjct: 207 SVWL----EDRSHVVVTTPGKLLRMCSLRPEYCTLVSYLVMDEADLLL-SFGYEEEMIKI 261
Query: 225 FRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL-TLHGLQQYYIKLNEKE 283
P Q +M SATL ++ + + F+ P+ E L L QY + E
Sbjct: 262 RSKLPPTYQCLMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNSDQLTQYQLTCGSDE 321
Query: 284 KNRKLAQLLDDLEF--NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYK 341
+ + + L+ + I+FV + R +L +L + ++ M R
Sbjct: 322 ERFAILVAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVIN 381
Query: 342 AFKEFEKRICVSTDV--------------------------------------FGRGIDI 363
F E +I +++DV RGID
Sbjct: 382 QFNEGSYQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKKASKLDKESGVSRGIDF 441
Query: 364 ERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAIS-----------MISSEDDEQVLAK 412
++ +N+D P D Y+HRVGR R KG A+S I E ++Q+ K
Sbjct: 442 HHVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEINQQMGRK 501
Query: 413 IQERFDVKITE 423
+ + ++ +I E
Sbjct: 502 VLQPYEFRIKE 512
>7296165 [A] KOG0330 ATP-dependent RNA helicase
Length = 536
Score = 106 bits (265), Expect = 6e-23
Identities = 99/410 (24%), Positives = 193/410 (46%), Gaps = 35/410 (8%)
Query: 28 VNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSRAI-IDCGFEHPSEVQQHTIPQ 86
+NA GE ++ + + STG + + P+L + ++ G + + +Q+ +P
Sbjct: 88 LNASVRGEELQQEMQTVDEF--LESTGMQ---IHPQLLENLRVELGIKLLTGIQKQGMPV 142
Query: 87 SIHGTD-VLCQAKSGLGKTAVFVLSTLQQLDPVQGEV---------SVVVLCNARELAYQ 136
+HG + L A++G GKT ++L + +L +Q EV V++L RELA Q
Sbjct: 143 -VHGNEHCLIAAETGCGKTITYLLPIVDKL--LQKEVVTERKLNTPRVLILTPGRELATQ 199
Query: 137 IRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHID 196
I + ++ ++K GG + +++ + I+VAT G L LV
Sbjct: 200 IAGVTEKLTQGT-NLKVQSLLGGNTKQL---MMNPQFEEVDILVATLGALSKLVTTGIYR 255
Query: 197 LSHVKNFVIDECDKVLEELD-------MRRDVQDIFRATPRDKQVMMFSATLSQEIRPIC 249
+ V++ V+DE D +L++ +RR + + Q+++ SAT+ R I
Sbjct: 256 MEQVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREIL 315
Query: 250 RRFLQ-NPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLL--DDLEFNQVIIFVKS 306
+ + + + V + + Q +++L++ ++ L L+ D + +I+F
Sbjct: 316 HKVIDVDTIREVVSPHLHRLMSHVTQKFLRLSKADRPATLLSLVKHDLAKRRPLIVFSNK 375
Query: 307 TVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERI 366
+ ++ ++ LN S + ++G M + R+ R++ F+ + +TDV RG+D R
Sbjct: 376 STTSDFVSIFLNNSGVNCLNLNGDMLMKIRLGRFEQFQNGHCDVLSTTDVGSRGLDTTRA 435
Query: 367 NLAINYDMPNEADQYLHRVGRAGRFGT--KGLAISMISSEDDEQVLAKIQ 414
+N+D P Y+HR GR GR G K L ++ISS + V+ +I+
Sbjct: 436 RHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNLISSRREIDVVQRIE 485
>SPBC691.04 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 535
Score = 105 bits (261), Expect = 2e-22
Identities = 91/362 (25%), Positives = 173/362 (47%), Gaps = 27/362 (7%)
Query: 61 KPELSRAIIDCGFEHPSEVQQHTIPQSIHGTD-VLCQAKSGLGKTAVFVLSTLQQLDPVQ 119
K LSRA GFE + VQQ + + + + QAK+G GKT F+L + D ++
Sbjct: 50 KNSLSRA----GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFK--DVLK 103
Query: 120 GE-------VSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
G+ + V+L RELA QI E + + Y ++ + GG + + + +
Sbjct: 104 GKPRLNSSKIHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRG 162
Query: 173 ETVPHIIVATPGRLKALVRDKHI-DLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD 231
++++ATPGRL+ +++ I + +F++DE D++++ + + +I A
Sbjct: 163 NA--NLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD-MGFAESILNIHEAVTTT 219
Query: 232 K-QVMMFSATLSQEIRPICRRFLQNPLEIF--VDDEAKLTLHGLQQYYI--KLNE--KEK 284
K + + FSAT+ ++ + R L ++ +D T + Q+ I KL++
Sbjct: 220 KTRKLCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSS 279
Query: 285 NRKLAQLLDDLEFNQVIIFVKSTVRANELTKLL-NASNFPAITVHGHMKQEERIARYKAF 343
L QL +++I+F+ + + + +L N P +H + +R + ++F
Sbjct: 280 LSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESF 339
Query: 344 KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
++ + I +TDV RG+D I + P+ D Y+HR+GR GR G G A ++
Sbjct: 340 RKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLE 399
Query: 404 ED 405
++
Sbjct: 400 QE 401
>Hs4826686 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 740
Score = 104 bits (260), Expect = 2e-22
Identities = 88/334 (26%), Positives = 152/334 (45%), Gaps = 59/334 (17%)
Query: 130 ARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLK 187
+RELA Q N +F KY+ P ++ + GG ++ + +L E I+V TPGRL
Sbjct: 295 SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVL---ENGVDIVVGTPGRLD 351
Query: 188 ALVRDKHIDLSHVKNFVIDECDKVLEELD---MRRDVQDIFRATPRDK--QVMMFSATL- 241
LV ++LS V+ V+DE D +L + + R I + T K QV++ SATL
Sbjct: 352 DLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLH 411
Query: 242 SQEIRPICRRFLQNP--LEIFVDDEAKLTLHG---------------LQQYYIKLNEKE- 283
S +++ + + + P +++ +D T+H L + +I+ ++
Sbjct: 412 SFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHA 471
Query: 284 ---------------------KNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLL----- 317
K + + + + +Q IIF ++ + + L +
Sbjct: 472 KDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGG 531
Query: 318 ----NASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYD 373
F + +HG K ER + FK+ + R + TDV RGIDI + IN
Sbjct: 532 GPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT 591
Query: 374 MPNEADQYLHRVGRAGRFGTKGLAISMISSEDDE 407
+P+E Y+HR+GR GR GLAIS++++E ++
Sbjct: 592 LPDEKQNYVHRIGRVGRAERMGLAISLVATEKEK 625
>Hs20548790 [A] KOG0329 ATP-dependent RNA helicase
Length = 134
Score = 104 bits (260), Expect = 2e-22
Identities = 66/169 (39%), Positives = 93/169 (54%), Gaps = 35/169 (20%)
Query: 148 MPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDE 207
MP VK +VF+GG K + +LL P ++V TPG + ALV+++ ++L +VK+FV+DE
Sbjct: 1 MPSVKVSVFFGGLFIKKNEELLMN---CPCVMVGTPGWIVALVQNRSLNLKNVKHFVLDE 57
Query: 208 CDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL 267
+L+ LDM RD++ +Q P+++FVDDE K
Sbjct: 58 ---MLQWLDMWRDMES-----------------------------MQGPMDVFVDDETKR 85
Query: 268 TLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKL 316
TLH QQ Y+KL + EKN KL LLD LEF QV IF+K A L +
Sbjct: 86 TLHTPQQDYLKLKDTEKNCKLFDLLDMLEFKQVAIFIKPENDAKALNDI 134
>7296530 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 727
Score = 103 bits (258), Expect = 4e-22
Identities = 83/336 (24%), Positives = 150/336 (43%), Gaps = 52/336 (15%)
Query: 117 PVQGEVSVVVLCNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTEYKNDIDLLSKKET 174
P +++ +RELA Q N+ +F ++ P+V++ + GG + L +
Sbjct: 282 PAPNAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGT- 340
Query: 175 VPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEE-----LDMRRDVQDIFRATP 229
HI+V TPGRL+ ++ + L+H + FV+DE D +L++ +D +
Sbjct: 341 --HIVVGTPGRLEEMINSGLVLLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDG 398
Query: 230 RDKQVMMFSATLSQ-EIRPICRRFLQNPLEI-----------------FVDDEAKLTLHG 271
R Q+++ SATL E++ + R + P + VD + T
Sbjct: 399 RRLQMVVCSATLHAFEVKKMAERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQS 458
Query: 272 LQQ------------YYIKLNEKEKNRKLAQLL---------DDLEFNQVIIFVKSTVRA 310
L+Q + + KE + +LL D ++ IIF ++
Sbjct: 459 LRQPIGTDGVHDRDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMDRAIIFCRTKQDC 518
Query: 311 NELTKLLN---ASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERIN 367
+ L + L ++ + +HG K +ER + FK + + + TDV RG+DI +
Sbjct: 519 DNLERFLRQRGGKHYSCVCLHGDRKPQERKENLEMFKRQQVKFLICTDVAARGLDITGLP 578
Query: 368 LAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISS 403
IN +P++ Y+HR+GR GR GLAIS++++
Sbjct: 579 FMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614
>SPCC285.03 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 604
Score = 102 bits (255), Expect = 9e-22
Identities = 97/382 (25%), Positives = 159/382 (41%), Gaps = 65/382 (17%)
Query: 85 PQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP-VQGEVSVVVLCNARELAYQIRNEYLR 143
P +G DV A +G GKT +V+ +Q L + VV+ REL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKT--- 224
Query: 144 FSKYMPD--VKTAVFYGGTEYKNDIDLLSKKETVPHI--IVATPGRLKALVR-DKHIDLS 198
F YM ++ + G +++ L+ E I +V+TPGRL +R D+ L
Sbjct: 225 FEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQ 284
Query: 199 HVKNFVIDECDKVLEE-------------------------LDMRRDVQDIFRAT----- 228
H++ VIDE D++L++ LD+ +++ F
Sbjct: 285 HLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLL 344
Query: 229 ----PRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHG------------- 271
P Q ++FSATL+++ I L NP + V ++ G
Sbjct: 345 PYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVP 404
Query: 272 --LQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNA------SNFP 323
LQ+Y++ ++ EK L L+ ++ FVKS A L +LL +F
Sbjct: 405 PTLQEYHVSVSS-EKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFS 463
Query: 324 AITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLH 383
+ ++ER F + + V +D+ RGID+ INYD P Y+H
Sbjct: 464 CGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
Query: 384 RVGRAGRFGTKGLAISMISSED 405
R+GR R G +G A +++ S +
Sbjct: 524 RIGRTARAGREGFAWTLVQSHE 545
>At3g06980 [A] KOG0331 ATP-dependent RNA helicase
Length = 781
Score = 102 bits (253), Expect = 1e-21
Identities = 102/436 (23%), Positives = 186/436 (42%), Gaps = 64/436 (14%)
Query: 12 YSDNEQEVQ--VDNKATEVNAEGNGESQA----KDSD---KKGSYVGIHSTGF---KDFL 59
++DNE+ ++ +K ++ N+ G G+ ++ +D D ++ TGF K F
Sbjct: 318 FTDNERGLRGGSHSKGSDTNSRGWGDRRSVVYTRDMDDWRERNKTKDTRETGFFSRKTFA 377
Query: 60 ---LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL- 115
++ +A+ + F+ P+ +Q I G + +SG GKT +++ +Q+L
Sbjct: 378 EIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLR 437
Query: 116 -DPVQGEVS-------VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDID 167
+ +QG V+VL ELA Q+ SK ++ V GG + ++
Sbjct: 438 EEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLE 497
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRA 227
L E +++ATPGR L+ + + LS+++ ++DE D + + + +Q++ +
Sbjct: 498 NL---EQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINS 554
Query: 228 TPRDKQVMMFSATLSQEIR-------PICR-------RFLQNPLEIFV-----DDEAKLT 268
+P Q + +ATL EI P C + N LE F+ DD A+ T
Sbjct: 555 SPVTAQYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKT 614
Query: 269 LHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLL-----NASNFP 323
Q K L Q++++ ++ IIF ++ +
Sbjct: 615 PETAFQ--------NKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLH 666
Query: 324 AITVHGHMKQEERIARYKAF----KEFEKRICVSTDVFGRGIDIERINLAINYDMPNEAD 379
+ H + QE R+ + F E V TD RGID ++ + +D P +
Sbjct: 667 VLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPS 726
Query: 380 QYLHRVGRAGRFGTKG 395
+Y+ RVGR R G +G
Sbjct: 727 EYVRRVGRTAR-GARG 741
>YBR142w [A] KOG0347 RNA helicase
Length = 773
Score = 100 bits (250), Expect = 3e-21
Identities = 97/428 (22%), Positives = 185/428 (42%), Gaps = 70/428 (16%)
Query: 60 LKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL---- 115
L + +++ + F P+E+Q+ +IP + G DV+ +A +G GKT + + +++L
Sbjct: 178 LSMTILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNF 237
Query: 116 DPVQGEVSVVVLCNARELAYQIRNEYLRFSKYM---PDVKTAVFYGGTEYKNDIDLLSKK 172
+ ++ RELA+Q+ + + + + GG + LL K
Sbjct: 238 SQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLL-KY 296
Query: 173 ETVPHIIVATPGR-LKALVRDKHI--DLSHVKNFVIDECDKVLEE-------------LD 216
+ I++ATPGR L+ L +D + S V ++DE D++L++ L
Sbjct: 297 DNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLV 356
Query: 217 MRRDVQDIFRATPRDKQVMMFSATLSQEI--------RPICRRFLQN------------- 255
RR ++ + + Q ++FSAT S ++ + RRF N
Sbjct: 357 ERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMS 416
Query: 256 -------PLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTV 308
P+ I + E+K++ +++ I+ E++ L +IF +
Sbjct: 417 KIHFNSKPVIIDTNPESKVSSQ-IKESLIECPPLERDLYCYYFLTMFP-GTTLIFCNAID 474
Query: 309 RANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKR----------------ICV 352
+LT LN PA +H M Q+ R+ + FK+ + + +
Sbjct: 475 SVKKLTVYLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLI 534
Query: 353 STDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAK 412
++DV RG+DI + I+Y +P D Y+HR GR R G++G++ + S ++ L K
Sbjct: 535 ASDVAARGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQESMGPLRK 594
Query: 413 IQERFDVK 420
+++ K
Sbjct: 595 LRKTLATK 602
>At4g15850 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 474
Score = 100 bits (250), Expect = 3e-21
Identities = 99/375 (26%), Positives = 157/375 (41%), Gaps = 63/375 (16%)
Query: 92 DVLCQAKSGLGKTAVFVLSTLQQLD--PVQGEVSVVVLCNARELAYQIRNEYLRFS---- 145
D+ + +G GKT + L +Q L PV+ ++VVL R+LA Q+++ + +
Sbjct: 26 DICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVL-PTRDLALQVKDVFDAIAPAVG 84
Query: 146 --------------KYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVR 191
+ +KT G Y D DL E+ I+VATPGRL +
Sbjct: 85 LSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPD-DLSQNLESAVDILVATPGRLMDHIN 143
Query: 192 D-KHIDLSHVKNFVIDECDKVLEELDM--------------------------------- 217
+ K L H++ V+DE D++L E
Sbjct: 144 NTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQ 203
Query: 218 ---RRDVQDIFRATPRDKQV-MMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQ 273
R+ V+ F+ P + V M+ SATL+Q+ + + L +PL + L+
Sbjct: 204 TVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLE 263
Query: 274 QYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVH---GH 330
+ K L LL E + IIF S L KLLN P I G
Sbjct: 264 CLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGG 323
Query: 331 MKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGR 390
+ Q R KAF++ + ++ V++D RG+D++ + INYDMP A ++HR GR R
Sbjct: 324 LNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTAR 383
Query: 391 FGTKGLAISMISSED 405
G G +++S+ +
Sbjct: 384 AGQAGRCFTLLSNHE 398
>ECU06g1250 [A] KOG0337 ATP-dependent RNA helicase
Length = 465
Score = 100 bits (249), Expect = 4e-21
Identities = 96/383 (25%), Positives = 171/383 (44%), Gaps = 60/383 (15%)
Query: 50 IHSTGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL 109
I FK L L R I+ +E P+ +Q+ TIP + ++ ++G GKT +++
Sbjct: 7 IKGGSFKTMGLDYRLLRNIL---YEGPTPIQRKTIPLILERRSLMGVGRTGSGKTLCYLI 63
Query: 110 STLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLL 169
+Q+ + GE ++V++ +EL Q R R ++ +
Sbjct: 64 PAIQRA--ISGEKTLVIV-PTKELVIQARRVLKRLARGI--------------------- 99
Query: 170 SKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATP 229
+E I + TPG+++ + D V+DE D++LEE ++ I +
Sbjct: 100 --EEAWKLIEICTPGKIEGMSADM---------LVVDEIDRILEEPSLKSVFDRINESLS 148
Query: 230 RDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLA 289
K + FSATL +PL + V + ++ ++ + + K L
Sbjct: 149 CQK--VFFSATLPD-----------HPLNMKVVEIETRINETVKHFFFYIPSESKEAALL 195
Query: 290 QLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKR 349
++LD + + I+F + L ++LN +NF + ++ M E R A ++ F +
Sbjct: 196 RILD--KTRKTIVFAATKYAVELLLEILNKNNFESRGIYSSMDDEARRANFRDFNTSKFS 253
Query: 350 ICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
I V TDV RG+DI ++ +NYD+ +E +LHRVGR G + S ++ D
Sbjct: 254 ILVVTDVAARGLDIPYLDTVVNYDLCDER-TFLHRVGRVRGMGVQ---YSFVTYTDVFHF 309
Query: 410 LAKIQERF--DVKITEFPEEGVD 430
IQE + DV+I P+E +D
Sbjct: 310 F-NIQETYLPDVEIGTIPQEYLD 331
>CE00456 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 696
Score = 99.0 bits (245), Expect = 1e-20
Identities = 93/368 (25%), Positives = 162/368 (43%), Gaps = 43/368 (11%)
Query: 85 PQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEV-SVVVLCNARELAYQIRNEYLR 143
P + DV A +G GKT +VL L + ++ V+L + L QI +E+ R
Sbjct: 254 PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKR 313
Query: 144 FSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDK---HIDLSHV 200
++ K G +++ + L+ P++IVATP RL + K IDLS +
Sbjct: 314 WNDESGVAKVVSLSGANDFEKEARQLASDP--PNVIVATPARLVQHLTSKIPPPIDLSKL 371
Query: 201 KNFVIDECD---KVLEE------------LDMRRDVQDIFRATPRDKQVMMFSATLSQEI 245
+ ++DE D K++ E ++ ++DI R R Q ++ SATLS+++
Sbjct: 372 RFLIVDEADRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQR-RAPQKIVLSATLSKDV 430
Query: 246 RPICRRFLQNP-----LEIFVDD-----------EAKLTL-HGLQQYYIKLNEKEKNRKL 288
+ L P + V D +L L + + + K +
Sbjct: 431 EELHLWNLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLAV 490
Query: 289 AQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEK 348
Q + +FN+ +IFV +N L +L V Q RYK ++F K
Sbjct: 491 YQQITRNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKMLEKFNK 550
Query: 349 ---RICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
R+ + +DV RG D+ +++ INY++P + ++HR GR GR G G IS + ++
Sbjct: 551 NENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVIS-VGDKE 609
Query: 406 DEQVLAKI 413
+++ K+
Sbjct: 610 SKRLFVKM 617
>At4g09730 [A] KOG0331 ATP-dependent RNA helicase
Length = 496
Score = 99.0 bits (245), Expect = 1e-20
Identities = 93/374 (24%), Positives = 164/374 (42%), Gaps = 56/374 (14%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F++ L E+ A+ + E P+E+Q IP + V+ + +G GKT ++L +Q
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQV 173
Query: 115 LDPVQGEVSV-------------VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTE 161
L + E VVLC REL+ Q+ L + ++ + GG+
Sbjct: 174 LSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV---CLHQDYHHARFRSILVSGGSR 230
Query: 162 YKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDV 221
+ D L+ ++V TPGR+ + + ++ + V+DE D + +
Sbjct: 231 IRPQEDSLNN---AIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDR------- 280
Query: 222 QDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAK-------LTLH---- 270
++ F A L+Q I+ + ++ VD+E + TLH
Sbjct: 281 -------GFGPEIRKFLAPLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIA 333
Query: 271 GLQQYYIKLNEKEKNRKLAQLLDDLE-----FNQVIIFVKSTVRANELTKLLNASNFPAI 325
+ +IKL+ E KL LL LE ++V++F + + + L+ + +
Sbjct: 334 NARHDFIKLSGGED--KLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTV 391
Query: 326 TVHGHMKQEERIARYKAFKEFEKRIC---VSTDVFGRGIDIERINLAINYDMPNEADQYL 382
HG + E+R+ K FK+ E+ C V TD+ RG+D++ ++ + +D P + YL
Sbjct: 392 NYHGEVPAEQRVENLKKFKD-EEGDCPTLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYL 449
Query: 383 HRVGRAGRFGTKGL 396
HR GR R G KGL
Sbjct: 450 HRTGRTARMGAKGL 463
>SPBC21H7.04 [A] KOG0348 ATP-dependent RNA helicase
Length = 709
Score = 97.8 bits (242), Expect = 3e-20
Identities = 103/434 (23%), Positives = 183/434 (41%), Gaps = 70/434 (16%)
Query: 43 KKGSYVGIHSTGFKDFLLKPELSRAIID-CGFEHPSEVQQHTIPQSIH--GTDVLCQAKS 99
K+ S I +T F L +L+ + + P+ +Q +P ++ D +A++
Sbjct: 128 KEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQT 187
Query: 100 GLGKTAVFVLSTLQQLDPVQGE-------VSVVVLCNARELAYQIRN--EYLRFSKYMPD 150
G GKT ++L +Q+L + + V++ REL QI N L +
Sbjct: 188 GSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHW 247
Query: 151 VKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKA-LVRDKHIDLSHVKNFVIDECD 209
+ + GG + K++ + K +I++ TPGRL L + +D+S V+ V+DE D
Sbjct: 248 IVSCNVIGGEKKKSEKARIRKGV---NILIGTPGRLADHLENTEALDVSQVRWVVLDEGD 304
Query: 210 ------------KVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPL 257
K+L L+ + + + P K M+ SAT+ ++ + L++ L
Sbjct: 305 RLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDAL 364
Query: 258 EIF------VDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDD--LEFNQVIIFV----- 304
+ +D L Q Y+ + K + L LL + ++IIF+
Sbjct: 365 YLKSSIVEETNDGYSQAPEQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDS 424
Query: 305 --------KSTVRANELTKLLNA---------SNFPAITV---------HGHMKQEERIA 338
+ + A+E+ + + SN PA+ + HG + Q+ R +
Sbjct: 425 VDFHFEAFRCAINADEMEEAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTS 484
Query: 339 RYKAFKEFE---KRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKG 395
F E I + TDV RG+D+ ++L + YD P D YLHR+GR R G G
Sbjct: 485 TLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNG 544
Query: 396 LAISMISSEDDEQV 409
AI + ++ E +
Sbjct: 545 AAIMFLLPKESEYI 558
>At1g71280 [A] KOG0345 ATP-dependent RNA helicase
Length = 465
Score = 97.8 bits (242), Expect = 3e-20
Identities = 82/323 (25%), Positives = 149/323 (45%), Gaps = 47/323 (14%)
Query: 60 LKPELSRAIIDC----GFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-- 113
LKP LS II+ GFE + VQ TIP DV+ A +G GKT F+L ++
Sbjct: 20 LKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 79
Query: 114 ----QLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKN-DIDL 168
P +V V++ REL+ QI V AV + + + D+
Sbjct: 80 RRSNSYPPKPHQVMGVIISPTRELSAQIHK-----------VARAVRLDFAKCREVEADM 128
Query: 169 LSKKETVPHIIVATPGRLKALV-RDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRA 227
+ +E ++++ TPGRL ++ R + +D +++ ++DE D++L ++ ++ V I
Sbjct: 129 NTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL-DMGFQKQVNYIISR 187
Query: 228 TPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRK 287
P+ ++ +FSAT +Q + + + L+NP Y+K +K+ +
Sbjct: 188 LPKQRRTGLFSATQTQAVADLAKAGLRNP-------------------YLKCEADQKSSQ 228
Query: 288 LAQLLDDLEFNQVIIFVKSTVRAN----ELTKLLNASNFPAITVHGHMKQEERIARYKAF 343
L LL + + ++++F + + ++K+ + + HG M Q+ R +F
Sbjct: 229 LVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASF 288
Query: 344 KEFEKRICVSTDVFGRGIDIERI 366
E + + TDV RG+DI I
Sbjct: 289 TEASSGVLLCTDVAARGLDIPGI 311
>7293348 [A] KOG0348 ATP-dependent RNA helicase
Length = 975
Score = 97.4 bits (241), Expect = 4e-20
Identities = 108/419 (25%), Positives = 174/419 (40%), Gaps = 90/419 (21%)
Query: 77 SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS------VVVLCNA 130
+ VQQ TIP+ + G DVL ++++G GKT + L ++ L Q + +V+
Sbjct: 352 TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPT 411
Query: 131 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL-KAL 189
REL Q + K + GG K++ L K +I++ TPGRL L
Sbjct: 412 RELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKG---INILIGTPGRLVDHL 468
Query: 190 VRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDK-----------QVMMFS 238
+ L+ ++ ++DE D++L EL RDV+ + A + + Q M+ S
Sbjct: 469 LHTASFKLTKLQFLILDEADRLL-ELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLS 527
Query: 239 ATLSQEIRPICRRFLQNPLEIFVDDEA------------KLTLHGLQQYYIKLNE-KEKN 285
ATL+ +++ + L+NPL I DEA K T+ L + L E +E
Sbjct: 528 ATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDV 587
Query: 286 RKLAQLLDDLEFNQVIIFVKSTVRA--NELTKLLNAS--NFPAITVHG--------HMKQ 333
+ + ++L+ + V++ K + A + L K ++AS F AI H
Sbjct: 588 TGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDML 647
Query: 334 EERIARYKAFKEFEK--------------------------------------RICVS-- 353
E + R +E E+ R C S
Sbjct: 648 NEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCV 707
Query: 354 ---TDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQV 409
TDV GRGID+ I L + Y P ++HRVGR R G KG A+ ++ + + V
Sbjct: 708 LLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFV 766
>CE27641 [A] KOG0349 Putative DEAD-box RNA helicase DDX1
Length = 752
Score = 91.3 bits (225), Expect = 3e-18
Identities = 86/358 (24%), Positives = 151/358 (42%), Gaps = 54/358 (15%)
Query: 110 STLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYM--PDVKTAVFYGGTEYKNDID 167
S +QL V+L REL Q F+ + P ++ G +N
Sbjct: 294 SAAEQLSIDSSTPLCVILEPTRELVQQTFQNIQTFASVLDSPKIRCVTLAAG---ENMNQ 350
Query: 168 LLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLE-ELDMRRDVQDIFR 226
+L ET I+V TP R+ L+ + +++ VIDE D+ L + + ++ IFR
Sbjct: 351 ILRTLETGCDIVVGTPSRVFDLIHTGKLATKNLQFVVIDEIDQFLAGKNNCAHQIESIFR 410
Query: 227 ATP------RDKQVMMFSATLSQ-EIRPICRRFLQNP--LEIFVDDEAKLTLHGLQQYYI 277
P +QV+ SATL E+ R + P +++ D +H + +
Sbjct: 411 VLPLVAQDGTRRQVIACSATLHNFEVCRFADRHMSFPQWIDLKGADCVSADVHHVVCHVD 470
Query: 278 KLNEKEKNRKLAQ---LLDD------------------------------------LEFN 298
+K+ R++ Q L DD L+ +
Sbjct: 471 ASEDKQWIRQMHQQVHLEDDHVHDGDQIRPGTTDKDTISLGTKILKGIYVVRAIHALQMD 530
Query: 299 QVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
+ I+F ++ + + + L +N A +HG EER + + FK+ R V +DV
Sbjct: 531 KAIVFCRTKQQCDHMEHFLQQNNLSAACLHGDRSAEERQSSLEGFKKGIIRFLVCSDVVA 590
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQER 416
RG+D++ + I+ +P+E Y+HR+GR GR GL+IS++S +++ K + R
Sbjct: 591 RGLDVQGVPFVISVTLPDEKSMYVHRIGRVGRAERMGLSISLVSEYEEKAWYHKCRSR 648
>YNR038w [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 629
Score = 89.4 bits (220), Expect = 1e-17
Identities = 95/368 (25%), Positives = 153/368 (40%), Gaps = 48/368 (13%)
Query: 92 DVLCQAKSGLGKTAVFVLSTLQQLDPVQ-GEVSVVVLCNARELAYQIRNEYLRFSKYMPD 150
D+L A +G GKT + + +Q L Q + +++ + L Q+ Y +K
Sbjct: 229 DILVNAATGSGKTLAYSIPIVQTLFKRQINRLRCIIIVPTKLLINQV---YTTLTKLTQG 285
Query: 151 VKTAVFYGGTE--YKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDEC 208
V E K++ LS E P I++ TPGRL + K I+L ++K +IDE
Sbjct: 286 TSLIVSIAKLENSLKDEHKKLSNLE--PDILITTPGRLVDHLNMKSINLKNLKFLIIDEA 343
Query: 209 DKVLEELD-------MRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFV 261
D++L + M D P + M+FSATL+ + L P ++F+
Sbjct: 344 DRLLNQSFQGWCPKLMSHLKTDKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKP-KLFL 402
Query: 262 DDEAKLTL--HGLQQYYIKL-NEKEKNRKLAQLLDDLEFN-------QVIIFVKSTVRAN 311
KL + L ++ I + K + L L +F +++IFVKS +
Sbjct: 403 KQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSI 462
Query: 312 ELTKLL--------------NASNFPAITVHGHMKQEERIARYKAFKEFEKR-------I 350
L+KLL N N A++++ + K F I
Sbjct: 463 RLSKLLQLICESRSQSSVLKNLQNL-AVSINSVNSNNSKAENKKIVANFSHHSESAGITI 521
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVL 410
++TD+ RGIDI I INYD P + QY+HRVGR R G A +++ +
Sbjct: 522 LITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLLVGRGERTFF 581
Query: 411 AKIQERFD 418
+ + D
Sbjct: 582 DDLNKDLD 589
>7302399 [A] KOG0347 RNA helicase
Length = 813
Score = 89.0 bits (219), Expect = 1e-17
Identities = 77/321 (23%), Positives = 144/321 (43%), Gaps = 41/321 (12%)
Query: 113 QQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKK 172
+Q VQ + +VL RELA Q++N + +KY ++ A +GG +L +
Sbjct: 332 EQAQRVQTPLYGLVLTPTRELAVQVKNHLVAAAKYT-GIRVAAIFGGLAVAKQERVLRQ- 389
Query: 173 ETVPHIIVATPGRLKALVRDKHIDLSHVKN---FVIDECDKVLEE--LDMRRDVQDIFRA 227
P I+VATPGRL L + L +++ VIDE D+++E+ + R + + +
Sbjct: 390 --CPDIVVATPGRLWELYAQGNRHLGKIEDVSFLVIDETDRMVEKGHFEELRSLLKVLNS 447
Query: 228 TPRDK---QVMMFSATLS--------QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYY 276
+ K Q ++SATL+ + R + +R ++ VD + + + L
Sbjct: 448 DEQKKHQRQNFVYSATLTLVHDLPDHMQKRNVGKR--PKFVKQTVDQKIESLIEELGISQ 505
Query: 277 IKLNEKEKNRKLAQLLDDLEF-------------------NQVIIFVKSTVRANELTKLL 317
K+ + +++ AQ L + + I+F S L L
Sbjct: 506 PKIVDITSSQQTAQTLTESRLLCPIDHKDYHLYYFIQRHPGRTIVFCNSIDCVKRLATLF 565
Query: 318 NASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNE 377
+ + +H +M Q++R+ + F++ + ++TDV RG+DI + I+Y +P
Sbjct: 566 GLLDCNPLPLHANMIQKQRLKNLERFRDSPTGLLIATDVAARGLDIPNVEHVIHYQVPRT 625
Query: 378 ADQYLHRVGRAGRFGTKGLAI 398
++ Y+HR GR R G+ +
Sbjct: 626 SENYVHRSGRTARANKHGITV 646
>Hs22054507 [A] KOG0342 ATP-dependent RNA helicase pitchoune
Length = 729
Score = 87.0 bits (214), Expect = 5e-17
Identities = 92/388 (23%), Positives = 165/388 (41%), Gaps = 59/388 (15%)
Query: 13 SDNEQEVQVDNKATEVNAEGNGESQAKDSDKKG-SYVGIHSTGFKDFLLKPELS------ 65
++N+ E + ++ T E N E + D + + + TG D LS
Sbjct: 320 TENKGESKEESAKTPKETENNLEKPDNEEDNREVPSLRLRLTGAFDDTSFASLSNLVNEN 379
Query: 66 --RAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS 123
+AI + F + +E+Q TI + G D+L AK+G + V L + P
Sbjct: 380 TLKAIKEMSFMNMTEIQHKTIRSLLEGRDLLAAAKTGSVELTV-KLKFMPTNRP-----G 433
Query: 124 VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATP 183
V +L RELA QI + + GG + L+ +IIVATP
Sbjct: 434 VFILSPTRELAMQIFGGANTHHMHT----YGLIMGGDNTSAEAQKLANGI---NIIVATP 486
Query: 184 GRLKALVRDKH-IDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLS 242
G L +++ +++ VIDE D++L+ + +++ I + P + M+ SAT +
Sbjct: 487 GHLLDYMQNTPGFMYKNLQYLVIDEADRILD-VGFEEELKQIIKLLPTCRHTMLLSATQT 545
Query: 243 QEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVII 302
++ V+D A+++L KNRK ++++
Sbjct: 546 RK----------------VEDLARISLK---------KGAIKNRK----------RKIMV 570
Query: 303 FVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGID 362
F S++ +LLN + P + +HG KQ + + F + + I + DV RG+D
Sbjct: 571 FFSSSMSVKYHYELLNYMDLPILAIHGKQKQNKGTTTFFQFCKADSGILLCMDVAARGLD 630
Query: 363 IERINLAINYDMPNEADQYLHRVGRAGR 390
I ++ + +D ++ +Y+HRV R R
Sbjct: 631 IPEVDWIVQHDPLDDPKEYIHRVSRTAR 658
>CE27336 [A] KOG0334 RNA helicase
Length = 436
Score = 83.2 bits (204), Expect = 7e-16
Identities = 75/274 (27%), Positives = 118/274 (42%), Gaps = 49/274 (17%)
Query: 125 VVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPG 184
V+L RELA Q E +F+K + +K A YGG I L + I+V TPG
Sbjct: 120 VILTPTRELAMQTYKEANKFAKPL-GLKVACTYGGVGISEQIADLKRGA---EIVVCTPG 175
Query: 185 RL---KALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATL 241
R+ A K +L V V+DE D++ + F K V+ T
Sbjct: 176 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFHKG---------FEPQVGGKSVVCSDITQ 226
Query: 242 SQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEFNQVI 301
+ I ++FL+ L L YY + I
Sbjct: 227 NAVICAEHQKFLK-------------LLELLGMYY-------------------DEGSSI 254
Query: 302 IFVKSTVRANELTKLLNASNFPAI-TVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRG 360
+FV +A+++ L + + ++ ++HG + Q +R + FK ++ V+T V RG
Sbjct: 255 VFVDKQEKADDIVDQLMRTGYNSVASLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARG 314
Query: 361 IDIERINLAINYDMPNEADQYLHRVGRAGRFGTK 394
+D++ + L +NYD PN + Y+HRVGR GR G K
Sbjct: 315 LDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRK 348
>7294064 [A] KOG0350 DEAD-box ATP-dependent RNA helicase
Length = 687
Score = 81.3 bits (199), Expect = 3e-15
Identities = 91/392 (23%), Positives = 160/392 (40%), Gaps = 66/392 (16%)
Query: 76 PSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDP-VQGEVSVVVLCNARELA 134
P ++ H P D+ A +G GKT F + +Q L V +V +V+ ELA
Sbjct: 169 PWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELA 228
Query: 135 YQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDID-------LLSKKETVPHIIVATPGRL- 186
Q+ Y S+ + V ++K + + K + I+V TPGRL
Sbjct: 229 LQV---YRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLV 285
Query: 187 KALVRDKHIDLSHVKNFVIDECDKVLEEL----------DMRRDVQDIFRATP------- 229
L K L +K VIDE D++++ + ++ + T
Sbjct: 286 DHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAE 345
Query: 230 ------RDKQVMMFSATLSQEIRPI--CRRF-------------LQNPLEIFVDDEAKLT 268
+ ++FSATLSQ+ + R F L++ E D EA LT
Sbjct: 346 LQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEA-LT 404
Query: 269 LHG-----------LQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLL 317
G L + Y + K + L++ ++ + + F S+ +A LT +L
Sbjct: 405 DPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVL 464
Query: 318 NAS----NFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYD 373
+ + G++ + R R + F + + +D RGID+ +++ ++Y+
Sbjct: 465 KVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYE 524
Query: 374 MPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
P Y+HRVGR R G KG A+++++ +D
Sbjct: 525 TPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
>At5g19210 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 430
Score = 80.5 bits (197), Expect = 5e-15
Identities = 93/384 (24%), Positives = 158/384 (40%), Gaps = 34/384 (8%)
Query: 51 HSTGFKDFLLKPELSRAI-IDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVL 109
HST + L SR I + E SE++ +++ ++ L Q G GKT ++L
Sbjct: 32 HSTSTRRALKSSPSSRIINLQAVAETSSEIESNSVTETTVPL-TLRQICQGSGKTLTYLL 90
Query: 110 STLQQLDPVQGEVSVVVLCNARELAYQIRN-EYLRFSKYMPDVK----TAVFYGGTEYKN 164
++P + V V++ REL Q+ + +K DVK A+ GGT ++
Sbjct: 91 LIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRH 150
Query: 165 DIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDI 224
L K P I+VAT L ++ + V+ V+DE D + V+ +
Sbjct: 151 KSWL---KAEPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKL 207
Query: 225 FRA-TPRDKQVMMFSATLSQEIRPICRRFLQNP------LEIFVDDEAKLTLHGLQQYYI 277
+ + DK+ +F++ + + +Q + + V + L L ++ +
Sbjct: 208 LTSFSSCDKRQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRF-V 266
Query: 278 KLNEKEKNRKLAQLLDDLEFNQVIIFV-------------KSTVRANELTKLLNASNFPA 324
+ K++ L LL+ IIFV ST E K +
Sbjct: 267 MCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEI 326
Query: 325 ITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHR 384
+ + G M R A ++ + VSTD+ RGID+ N+D+P YLHR
Sbjct: 327 LLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHR 386
Query: 385 VGRAGR---FGTKGLAISMISSED 405
GRAGR K + ++I+SE+
Sbjct: 387 AGRAGRKPFSDRKCIVANLITSEE 410
>7290730 [A] KOG0331 ATP-dependent RNA helicase
Length = 438
Score = 80.5 bits (197), Expect = 5e-15
Identities = 71/335 (21%), Positives = 153/335 (45%), Gaps = 26/335 (7%)
Query: 70 DCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS------ 123
D G++ P+ +Q T + G +++ + G GKT ++L + ++ +G +
Sbjct: 49 DQGYDGPTPIQAQTWSIAKEGKNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPI 108
Query: 124 VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATP 183
V++L + RE A ++ E L ++ + +++T G ++++ + ++VA+
Sbjct: 109 VLILVDCREAAVMVQREVLYYTNPL-ELRTHCLLGNSQWQGHAEC--------DLLVASA 159
Query: 184 GRLKALVRDKH--IDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATL 241
GRL ++ +K ++L V+D D++++ + + ++ + Q+++ S +
Sbjct: 160 GRLLQMIDNKKHVVELERCTYLVLDNIDRMID-VGLEGNICRLLCRLRPHAQLIVSSTSW 218
Query: 242 SQEIRPICRRFLQNPLEIFVDD--EAKLTLHGLQQYYIKLNEKEK----NRKLAQLLDDL 295
S ++ + +FL I V + + L ++Q +N K ++L + D
Sbjct: 219 SSNLKRMANKFLGQYTAIRVGEINNIGVRLQNIRQRVEVVNGLSKVERLMKELTAIYDTS 278
Query: 296 EF-NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVST 354
+ +V+I+VK EL L+ + P +HG +E F I V+T
Sbjct: 279 DIPGKVVIYVKRQKVVEELVDLIR-NCVPCEGIHGGRTAQENQGIIHDFGTGAYNIIVAT 337
Query: 355 DVFGRGIDIERINLAINYDMPNEADQYLHRVGRAG 389
+ +D+ I INYD P+ D+Y+ R+ R G
Sbjct: 338 QMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTG 372
>CE29051 [A] KOG0335 ATP-dependent RNA helicase
Length = 1016
Score = 79.7 bits (195), Expect = 8e-15
Identities = 72/307 (23%), Positives = 142/307 (45%), Gaps = 28/307 (9%)
Query: 54 GFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ 113
GFK +L +L + P+ +Q+ + +HG DV+ A +G GKT F++ +
Sbjct: 702 GFK--VLPQDLHDNLKRMKMNRPTPIQRASFFPIMHGDDVVACAHTGSGKTLAFLIPFVI 759
Query: 114 QL--------DPVQGEVS--VVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYK 163
+L D + S ++++ REL Q + + Y +K + +GG
Sbjct: 760 KLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLT-YETGLKCGLAFGGYSRN 818
Query: 164 NDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQD 223
++ L + +I+VAT GRL+ V + LS +K V+DE D++++ +D +V
Sbjct: 819 ANVQHLRSFSQL-NILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSIDFGEEVSK 877
Query: 224 IFRAT-PRDKQVMMFSATLSQEIR-PICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNE 281
I + R +Q ++FSA+ S++++ +F++ + D+ + Q + +
Sbjct: 878 IIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEKIDQKILPVPR 937
Query: 282 KEKNRKLAQLLD------------DLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHG 329
EK + +LL +E + +IFV S + L L++++ I++H
Sbjct: 938 TEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAALISSAGVSTISMHS 997
Query: 330 HMKQEER 336
+ QE+R
Sbjct: 998 YQNQEQR 1004
>Hs18595975 [A] KOG0335 ATP-dependent RNA helicase
Length = 468
Score = 79.0 bits (193), Expect = 1e-14
Identities = 70/273 (25%), Positives = 116/273 (41%), Gaps = 16/273 (5%)
Query: 138 RNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDL 197
R E +R Y P V V YG + I +L E H++VATPG L L+ I L
Sbjct: 204 RYEEVRKFSYQPRVHPCVVYGDADIGQQIQVL---EHGCHLLVATPGGLVDLMERGKIGL 260
Query: 198 SHVKNFVIDECDKVLE-------ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICR 250
K V+DE D++L+ L + +D + +MMFSAT EI+ + R
Sbjct: 261 DFCKYLVLDEADRMLDMGFGPQIHLILEQDTMPL----KGIHHIMMFSATFPNEIQMLAR 316
Query: 251 RFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLD-DLEFNQVIIFVKSTVR 309
FL + + V T + Q + + E +K L LL+ + + ++FV++
Sbjct: 317 DFLDEYIFLAV-GRVGSTSETITQEVVWVEEPDKRSFLLDLLNAPGKDSLTLVFVETKKG 375
Query: 310 ANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLA 369
+ L L +P ++HG Q +R + E +
Sbjct: 376 EDSLENFLYHEVYPCTSIHGDQSQRDREGGPSSVLLGENPNSSGYSCGSMKTRHFKCETC 435
Query: 370 INYDMPNEADQYLHRVGRAGRFGTKGLAISMIS 402
N+D+P++ ++Y+ +G G G +GLA S +
Sbjct: 436 FNFDLPSDIEEYVPCIGCTGCVGIQGLATSFFN 468
>Hs20336298 [A] KOG0348 ATP-dependent RNA helicase
Length = 585
Score = 77.0 bits (188), Expect = 5e-14
Identities = 81/335 (24%), Positives = 150/335 (44%), Gaps = 61/335 (18%)
Query: 77 SEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVS------VVVLCNA 130
+ VQ+ +IP + G D L ++++G GKT + + +Q L ++ ++ +VL
Sbjct: 255 TSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPT 314
Query: 131 RELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALV 190
RELA Q + + K + V GG + K++ L K +I+++TPGRL +
Sbjct: 315 RELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKG---INILISTPGRLVDHI 371
Query: 191 RD-KHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRD---KQVMMFSATLSQEIR 246
+ K+I S ++ V DE D++L +L +D+ I A + +Q ++ SATL++ +
Sbjct: 372 KSTKNIHFSRLRWLVFDEADRIL-DLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVT 430
Query: 247 PICRRFLQNPLEIFVDDEAKLTLH-------------------------GLQQYYIKLNE 281
+ L +P+ I V D++ L+ L+Q+ +
Sbjct: 431 RLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPS 490
Query: 282 KEKNRKLAQ-LLDDLEFNQ---VIIFVKSTVRAN-----ELTKLLNASNFPA-------- 324
K + LA +L +F + +++F S L LL++S PA
Sbjct: 491 KLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSAS 550
Query: 325 -----ITVHGHMKQEERIARYKAFKEFEKRICVST 354
+ +HG M+QEER A ++ F + + + T
Sbjct: 551 MRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT 585
>Hs20555745 [A] KOG0326 ATP-dependent RNA helicase
Length = 325
Score = 72.4 bits (176), Expect = 1e-12
Identities = 41/131 (31%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 61 KPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQG 120
K L I + G++ PS Q+ +IP ++ G D+L +AK+G GK++ + L++LD +
Sbjct: 57 KRRLLMRIFEMGWKKPSPFQEESIPIALSGRDILARAKNGTGKSSAHDIPLLKRLDLKKD 116
Query: 121 EVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIV 180
+ +V+ A Q+ ++ SK+M VK + GGT +D+ L +TV H+++
Sbjct: 117 TIQTIVIVPTGGPALQVSQICIQVSKHMGGVKVVMTTGGTNSGDDV--LRLDDTV-HMVI 173
Query: 181 ATPGRLKALVR 191
A PGR+ L++
Sbjct: 174 AAPGRILNLIK 184
Score = 53.5 bits (127), Expect = 6e-07
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 42/164 (25%)
Query: 272 LQQYYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHM 331
+ QYY + E +K L L L+ NQ+IIF + R K+
Sbjct: 191 ITQYYAYVTEHQKVHGLTTLFSRLQLNQMIIFFNCSQRVEWPAKISQL------------ 238
Query: 332 KQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRF 391
GIDI+ +N+ IN+D + YL +GR G F
Sbjct: 239 ----------------------------GIDIQAVNVVINFDFSKLEETYLRHIGRPGHF 270
Query: 392 GTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPSTYL 435
G GLAI++I+ D L I+E+ +I P +D S ++
Sbjct: 271 GHFGLAINLITYGDHFN-LKGIEEQLGKEIKPIP-SNIDKSLHV 312
>YKR024c [A] KOG0348 ATP-dependent RNA helicase
Length = 742
Score = 66.6 bits (161), Expect = 7e-11
Identities = 96/417 (23%), Positives = 167/417 (40%), Gaps = 81/417 (19%)
Query: 76 PSEVQQHTIPQSIHGT---DVLCQAKSGLGKTAVFVL---STLQQLDPVQGEVS---VVV 126
P+ +Q+ IPQ I D A++G GKT ++L ST+ +D S +V
Sbjct: 167 PTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRTSGAFALV 226
Query: 127 LCNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL 186
+ RELA QI + + + GG K++ L K + I+ TPGR+
Sbjct: 227 IAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKG---CNFIIGTPGRV 283
Query: 187 KALVRDKHI---DLSH-VKNFVIDECDKVLEE------LDMRRDVQDI------FRATPR 230
+++ + LS ++ V+DE DK++E ++ + V DI F P
Sbjct: 284 LDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINSEKFPKLPH 343
Query: 231 DKQVMMFSATLSQEIRPICRRFLQNPLEI-----------------------FVDDEAKL 267
M+ SATL+ + + L++ I V + +L
Sbjct: 344 KLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKKDSDIVTVAPDQLLQRITIVPPKLRL 403
Query: 268 -----TLHGLQQYYIKLNEKEKNRKLAQLL---DDLEF-------------NQVIIFVKS 306
TL+ + + +I ++ K + + D +EF N V+
Sbjct: 404 VTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVEFHYDAFSGSDGHHKNLTGDSVRL 463
Query: 307 TVRANELTKLLNASNFPAITV---HGHMKQEERIARYKAFKEFEKR------ICVSTDVF 357
+ N + + S P + + HG + Q+ R + + F + I TDV
Sbjct: 464 LTKGNTMFPCFSDSRDPDVVIYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVA 523
Query: 358 GRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
RG+D+ + I D P + +LHRVGR R G KG ++ + ++E+ + IQ
Sbjct: 524 SRGLDLPHVGSVIELDPPFAVEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQ 580
>ECU07g1060 [A] KOG0344 ATP-dependent RNA helicase
Length = 416
Score = 63.9 bits (154), Expect = 4e-10
Identities = 82/369 (22%), Positives = 150/369 (40%), Gaps = 29/369 (7%)
Query: 73 FEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD--PVQGEVSVV---VL 127
F+ P Q+ IP + T+V+ QA +G GKT + L ++ + G + V ++
Sbjct: 45 FDSPLLTQKVVIPYFLKKTNVIVQAFTGSGKTLSYCLPLVEMARGRSLFGAILVPGKPLV 104
Query: 128 CNARELAYQIRNEYLR----FSKYMPDVKTAVFYGGTEYKNDID------LLSKKETVPH 177
+ +I++E L+ + D G + ID +
Sbjct: 105 RQVYRVVREIKHEGLKVVGVYGDGREDFLVEEGEKGELVQKAIDDKMRERIAESLRASAR 164
Query: 178 IIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMF 237
+++ TP + L+ I +V + VIDE D ++ + + D + F
Sbjct: 165 VLIGTPRSVLGLMSMSEI--RNVTHLVIDEADLLINPETVGVFASILSVIEMEDIHISCF 222
Query: 238 SATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEF 297
SAT+++ + + +++ +I V + + ++ + K K+ L Q++ D
Sbjct: 223 SATMNEYVSEVIET-VKSITKIRVVSKRLID----HEFVFGTSRKIKHLSLLQIIADGIE 277
Query: 298 NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVF 357
+ +IFVK L+ LL S G + + K + F +TD
Sbjct: 278 SPTLIFVKDEKTGEALSMLLGKSAVYREDQEGSGEVLDGFRLKKIWYLF------TTDSL 331
Query: 358 GRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERF 417
RGID I INYD+P+ Q++HR+GR R +G I I S +D + + E
Sbjct: 332 SRGIDFYNIRSVINYDLPSTKTQFVHRIGRINR-NCQGQKIYTIYSSEDFGRIGVVAEFL 390
Query: 418 DVKITEFPE 426
+ E P+
Sbjct: 391 EENGHEVPK 399
>YMR190c [L] KOG0351 ATP-dependent DNA helicase
Length = 1447
Score = 60.5 bits (145), Expect = 5e-09
Identities = 75/351 (21%), Positives = 144/351 (40%), Gaps = 30/351 (8%)
Query: 80 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVV--VLCNARELAYQI 137
Q + ++ G DV +G GK+ + L + + G V+ ++ ++ +
Sbjct: 683 QLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHL 742
Query: 138 RNEYLRFSKYMPDVKTAVFYGGTEYKNDI------DLLSKKETVPHIIVATPGRLKALVR 191
N+ ++ S + G E + LL P +I A+ +A+ R
Sbjct: 743 LNKNIKASMFSSR-------GTAEQRRQTFNLFINGLLDLVYISPEMISASEQCKRAISR 795
Query: 192 DKHIDLSHVKNFVIDECDKVLE-ELDMRRDVQDI--FRATPRDKQVMMFSATLSQEIRPI 248
+ D + V+DE V D R D +++ F+ D ++ +AT S+++R
Sbjct: 796 -LYAD-GKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMD 853
Query: 249 CRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEF---NQV-IIFV 304
L+ +F+ T Y ++N+K KN + ++ D ++ NQ II+
Sbjct: 854 IIHNLELKEPVFLKQSFNRT-----NLYYEVNKKTKNT-IFEICDAVKSRFKNQTGIIYC 907
Query: 305 KSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIE 364
S + + + + H M+ +ER++ KA++ E ++ +T FG GID
Sbjct: 908 HSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGMGIDKP 967
Query: 365 RINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQE 415
+ ++ +P + Y GRAGR G I+ S D + IQ+
Sbjct: 968 DVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQK 1018
>Hs22057430 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 166
Score = 59.3 bits (142), Expect = 1e-08
Identities = 35/94 (37%), Positives = 46/94 (48%)
Query: 55 FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQ 114
F D L L R I G E PS +QQ I I G V+ QA+SG GK A F + LQQ
Sbjct: 18 FDDMNLSESLLRGIYAYGLEKPSAIQQRAILPCIKGYHVIAQAQSGAGKMATFAILILQQ 77
Query: 115 LDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYM 148
++ ++L +ELA QI+ + YM
Sbjct: 78 IELDLKATQALLLAPTQELAQQIQKVVMALGDYM 111
>Hs17459025 [J] KOG0327 Translation initiation factor 4F helicase subunit
(eIF-4A) and related helicases
Length = 202
Score = 56.6 bits (135), Expect = 7e-08
Identities = 21/41 (51%), Positives = 33/41 (80%)
Query: 365 RINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSED 405
+++L I+YD+P + Y+HR+GR G+FG KG+AISM++ ED
Sbjct: 158 KVSLLIDYDLPTNRENYIHRIGRGGQFGRKGVAISMVTEED 198
>Hs22045464 [A] KOG0343 RNA Helicase
Length = 597
Score = 56.2 bits (134), Expect = 9e-08
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 332 KQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRF 391
+Q R+ Y F + ++DV RG+D +N A+ +D P +A+ Y+HR GR R+
Sbjct: 217 QQMRRMEVYNEFVRKRAAVLFASDVAARGLDFPAVNWALQFDCPEDANTYIHRAGRTARY 276
Query: 392 GTKGLAISMISSEDDEQVLAKIQERFDVK-ITEFPEEGVD 430
G A+ ++ + + V +Q++ +K I PE+ +D
Sbjct: 277 KEDGEALLILLASEKAIVQQLLQKKVPIKEIKINPEKLID 316
>At1g27880 [L] KOG0351 ATP-dependent DNA helicase
Length = 941
Score = 56.2 bits (134), Expect = 9e-08
Identities = 26/97 (26%), Positives = 51/97 (51%)
Query: 296 EFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTD 355
E +I++ K + ++K L +N A H + ++R+ ++F + R+ V+T
Sbjct: 504 EIRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATV 563
Query: 356 VFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
FG G+D + I++ +P ++Y+ +GRAGR G
Sbjct: 564 AFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDG 600
>7295152 [L] KOG0351 ATP-dependent DNA helicase
Length = 1579
Score = 54.7 bits (130), Expect = 3e-07
Identities = 34/102 (33%), Positives = 49/102 (47%), Gaps = 5/102 (4%)
Query: 296 EFNQVIIFVKSTVR-----ANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRI 350
E ++ F+++ V+ + TK N+ A H M R KAF E RI
Sbjct: 1107 ECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKAFMSNELRI 1166
Query: 351 CVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
V+T FG GI+ I I+Y+MP + Y+ +GRAGR G
Sbjct: 1167 VVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDG 1208
>At1g59990 [A] KOG0333 U5 snRNP-like RNA helicase subunit
Length = 581
Score = 53.1 bits (126), Expect = 8e-07
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 23 NKATEVNAEGNGESQAKDSDKKGS--YVGIHSTGFKDFLLKPELSRAIIDCGFEHPSEVQ 80
N++ G + + +KKG+ + H+ +K L +S A+ D GF+ PS Q
Sbjct: 48 NRSDRKWVRGFASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQ 107
Query: 81 QHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNE 140
IP + G DV+ A++G GKT ++ + QL + V N E + ++N
Sbjct: 108 AVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVT---NREERPFPLKNI 164
Query: 141 YLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETV----------PHIIVATPGRLKALV 190
L + + V D + L + E V P IIV+TP L +
Sbjct: 165 SLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRLPDIIVSTPAALLNNI 224
Query: 191 ---RDKHID-LSHVKNFVIDECDKVL 212
R++ ++ L VK V DE D +L
Sbjct: 225 EPKRNRRLEFLRCVKYVVFDEADMLL 250
>ECU07g1130 [L] KOG0351 ATP-dependent DNA helicase
Length = 766
Score = 52.8 bits (125), Expect = 1e-06
Identities = 82/357 (22%), Positives = 139/357 (37%), Gaps = 45/357 (12%)
Query: 80 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRN 139
Q+ I + G DV +G GK+ + L L V +++VV + QIRN
Sbjct: 242 QREVIQACLSGKDVFVLMPTGGGKSICYQLPAL-----VYDGITIVVSPLLSLVQDQIRN 296
Query: 140 EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLS- 198
+ +P E +L E + I TP L A H LS
Sbjct: 297 LLQKGILALPINSNL---SRAERDLVFQVLGGDELICKIFYVTP-ELIAKSGHFHDVLSG 352
Query: 199 -----HVKNFVIDECDKVLE-ELDMRRDVQDI--FRATPRDKQVMMFSATLSQEIRPICR 250
+K FVIDE V + D R D +++ RA ++ +AT +Q++
Sbjct: 353 LVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE---- 408
Query: 251 RFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEK----EKNRKLAQL-LDDLEFNQV----- 300
+D L + G + + + N E K + + LD F Q
Sbjct: 409 ----------MDILENLGIRGCETFKMSFNRSNLRYEVRAKTSTVELDIASFVQTHFPDC 458
Query: 301 --IIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFG 358
II+ S +++ L A H + + ER + + + E ++ V+T FG
Sbjct: 459 CGIIYCTSKKECEMISEKLGKYMGTAF-YHAGLSKNERNSVQEKWNRGEFKVIVATIAFG 517
Query: 359 RGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQE 415
GID + + I+Y +P + Y GRAGR G + + + + D +++ I++
Sbjct: 518 MGIDKKDVRFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEK 574
>At3g05740 [L] KOG0351 ATP-dependent DNA helicase
Length = 624
Score = 52.8 bits (125), Expect = 1e-06
Identities = 54/222 (24%), Positives = 100/222 (44%), Gaps = 18/222 (8%)
Query: 203 FVIDECDKVLE-ELDMRRDVQDI------FRATPRDKQVMMFSATLSQEIRPICRRFLQN 255
FV+DE V + D R D +++ F P VM +AT ++ + C+ L++
Sbjct: 350 FVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVP----VMALTATATESV---CQDVLKS 402
Query: 256 PLEIFVDDEAKLTLHGLQ-QYYIKLNEKEKNRKLAQLLDDLEFNQV-IIFVKSTVRANEL 313
L I K++ + +Y + + KE ++L +LL D +Q I++ S ++
Sbjct: 403 -LRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDV 461
Query: 314 TKLLNAS-NFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINY 372
K LN + H + ++R+ + ++ E RI +T FG GID + I+
Sbjct: 462 AKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHN 521
Query: 373 DMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQ 414
+ + Y GRAGR G + I + +D +V+ ++
Sbjct: 522 TLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLR 563
>7299503 [L] KOG0351 ATP-dependent DNA helicase
Length = 1487
Score = 52.0 bits (123), Expect = 2e-06
Identities = 69/335 (20%), Positives = 125/335 (36%), Gaps = 45/335 (13%)
Query: 80 QQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRN 139
Q I ++ G D +G GK+ + QL + E +V+ + L + N
Sbjct: 742 QLQVINATLLGNDCFVLMPTGGGKSLCY------QLPAILTEGVTIVISPLKSLIFDQIN 795
Query: 140 EYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVP---HIIVATPGRLKALVR----- 191
+ D+ G + + + + E+ P ++ TP ++ + R
Sbjct: 796 KLASL-----DICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTL 850
Query: 192 DKHIDLSHVKNFVIDECDKVLE-ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICR 250
D +++ FVIDE V + D R D + + R V + T + R
Sbjct: 851 DTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPR---- 906
Query: 251 RFLQNPLEIFVDDEAKLTLHGLQQYYIKLNEKEKN-----RKLAQLLDDL--------EF 297
+ +D A+L L + + N +K LDD+ +
Sbjct: 907 --------VRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQH 958
Query: 298 NQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVF 357
II+ S +E +K + A++ H + +R +R K + + R+ +T F
Sbjct: 959 FSGIIYCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAF 1018
Query: 358 GRGIDIERINLAINYDMPNEADQYLHRVGRAGRFG 392
G GID + ++Y +P + Y GRAGR G
Sbjct: 1019 GMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDG 1053
>SPAC212.11 [L] KOG0351 ATP-dependent DNA helicase
Length = 1887
Score = 50.1 bits (118), Expect = 7e-06
Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 14/212 (6%)
Query: 197 LSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRR-FLQN 255
L + VIDE +L R + R + + + SAT +++ + R+ F N
Sbjct: 1313 LGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTN 1372
Query: 256 PLEIFVDDEAKLTLHGLQQYYIKLNEKEKNRKLAQLLDDLEF----NQVIIFVKSTVRAN 311
+V E + + + E L L+ + + IIF ++
Sbjct: 1373 ---FYVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVE 1429
Query: 312 ELTKLLNASNFPA---ITVH-GHMKQEERIARYKAFKEF--EKRICVSTDVFGRGIDIER 365
+ + L+ S+ A +T++ G + EER + AF+ + RI ++T FG GI+
Sbjct: 1430 YIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMG 1489
Query: 366 INLAINYDMPNEADQYLHRVGRAGRFGTKGLA 397
+ L ++Y +P + Y+ GRAGR G +A
Sbjct: 1490 VRLVVHYGLPASSMDYVQETGRAGRDGKYAIA 1521
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,715,830
Number of Sequences: 60738
Number of extensions: 1104491
Number of successful extensions: 4611
Number of sequences better than 1.0e-05: 243
Number of HSP's better than 0.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3662
Number of HSP's gapped (non-prelim): 300
length of query: 437
length of database: 30,389,216
effective HSP length: 109
effective length of query: 328
effective length of database: 23,768,774
effective search space: 7796157872
effective search space used: 7796157872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)