ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5721.1 good J KOG3295 Translation, ribosomal structure and biogenesis 60S Ribosomal protein L13
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5721.1 1966285 1966854 190
(190 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL082w [J] KOG3295 60S Ribosomal protein L13 273 1e-73
YMR142c [J] KOG3295 60S Ribosomal protein L13 273 1e-73
CE08526 [J] KOG3295 60S Ribosomal protein L13 133 2e-31
SPAC664.05 [J] KOG3295 60S Ribosomal protein L13 132 4e-31
Hs15431295 [J] KOG3295 60S Ribosomal protein L13 127 1e-29
At3g49010 [J] KOG3295 60S Ribosomal protein L13 122 4e-28
7297588 [J] KOG3295 60S Ribosomal protein L13 122 4e-28
At5g23900 [J] KOG3295 60S Ribosomal protein L13 117 7e-27
At3g48960 [J] KOG3295 60S Ribosomal protein L13 111 7e-25
ECU03g0320 [J] KOG3295 60S Ribosomal protein L13 100 1e-21
Hs14784147 [J] KOG3295 60S Ribosomal protein L13 79 5e-15
Hs22045017 [J] KOG3295 60S Ribosomal protein L13 65 6e-11
Hs17466264 [J] KOG3295 60S Ribosomal protein L13 35 0.047
CE04802 [DY] KOG0977 Nuclear envelope protein lamin intermediate... 34 0.14
CE07133 [DY] KOG0977 Nuclear envelope protein lamin intermediate... 29 3.4
CE02945_2 [T] KOG4193 G protein-coupled receptors 29 3.4
Hs5032287 [NTZ] KOG4286 Dystrophin-like protein 28 7.6
Hs5032285 [NTZ] KOG4286 Dystrophin-like protein 28 7.6
Hs5032283 [NTZ] KOG4286 Dystrophin-like protein 28 7.6
Hs5032281 [NTZ] KOG4286 Dystrophin-like protein 28 7.6
At5g23710 [K] KOG3233 RNA polymerase III subunit C34 28 7.6
7293663 [V] KOG2392 Serpin 28 7.6
At1g77800 [R] KOG0954 PHD finger protein 28 9.9
>YDL082w [J] KOG3295 60S Ribosomal protein L13
Length = 199
Score = 273 bits (698), Expect = 1e-73
Identities = 135/173 (78%), Positives = 145/173 (83%)
Query: 1 MKNHFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLDLLRPVVRAPTVKYNRKV 60
+KNHFRKHWQERVKVHFDQAG PLDLLRPVVRAPTVKYNRKV
Sbjct: 10 LKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLDLLRPVVRAPTVKYNRKV 69
Query: 61 RAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRK 120
RAGRGFTLAE+KAAGLT AYARTIGIAVDHRRQNRNQEI D N+QRLKEYQSKIIVFPR
Sbjct: 70 RAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRN 129
Query: 121 GKAPEAEQTLSAAASFPIVQPVTDSETRAVEDNGESAYRTLRLARSDKRYKGI 173
GKAPEAEQ LSAAA+FPI QP TD E RAV+DNGESA+RTLRLARS+K+++GI
Sbjct: 130 GKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGI 182
>YMR142c [J] KOG3295 60S Ribosomal protein L13
Length = 199
Score = 273 bits (697), Expect = 1e-73
Identities = 135/173 (78%), Positives = 145/173 (83%)
Query: 1 MKNHFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLDLLRPVVRAPTVKYNRKV 60
+KNHFRKHWQERVKVHFDQAG PLDLLRPVVRAPTVKYNRKV
Sbjct: 10 LKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPLDLLRPVVRAPTVKYNRKV 69
Query: 61 RAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRK 120
RAGRGFTLAE+KAAGLT AYARTIGIAVDHRRQNRNQEI D N+QRLKEYQSKIIVFPR
Sbjct: 70 RAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRD 129
Query: 121 GKAPEAEQTLSAAASFPIVQPVTDSETRAVEDNGESAYRTLRLARSDKRYKGI 173
GKAPEAEQ LSAAA+FPI QP TD E RAV+DNGESA+RTLRLARS+K+++GI
Sbjct: 130 GKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGI 182
>CE08526 [J] KOG3295 60S Ribosomal protein L13
Length = 207
Score = 133 bits (334), Expect = 2e-31
Identities = 78/181 (43%), Positives = 101/181 (55%), Gaps = 12/181 (6%)
Query: 4 HFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPL-DLLRPVVRAPTVKYNRKVRA 62
HFRKHW +R+K FDQ P+ LLR VVR P +YN K R
Sbjct: 13 HFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRL 72
Query: 63 GRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKGK 122
GRGF+L E+KAAG++ A ARTIGIAVD RR N+ E L N RLKEY++K+I+FP+K
Sbjct: 73 GRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKAS 132
Query: 123 APE----AEQTLSAAAS-----FPIVQPVTDSETRAVEDNGESA--YRTLRLARSDKRYK 171
AP+ + + L AA P+ +T E R V D +R LR R+DK+Y+
Sbjct: 133 APKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLRKERADKKYR 192
Query: 172 G 172
G
Sbjct: 193 G 193
>SPAC664.05 [J] KOG3295 60S Ribosomal protein L13
Length = 208
Score = 132 bits (331), Expect = 4e-31
Identities = 76/179 (42%), Positives = 101/179 (55%), Gaps = 11/179 (6%)
Query: 4 HFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLDLLRPVVRAPTVKYNRKVRAG 63
HF K WQ VK F+Q G P++ +RP V+ PT++YN KVRAG
Sbjct: 13 HFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAG 72
Query: 64 RGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKGKA 123
RGFTL E+KAAG++ A TIGI VDHRR+NR++E L N++R+K Y + +IVFPRK
Sbjct: 73 RGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQ 132
Query: 124 PE---------AEQTLSAAASFPIVQ-PVTDSETRAVEDNGESAYRTLRLARSDKRYKG 172
P+ AEQT AA PI Q V +++ E +A+ TL R+ RY G
Sbjct: 133 PKKGDATDVSGAEQT-DVAAVLPITQEAVEEAKPITEEAKNFNAFSTLSNERAYARYAG 190
>Hs15431295 [J] KOG3295 60S Ribosomal protein L13
Length = 211
Score = 127 bits (318), Expect = 1e-29
Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 12/185 (6%)
Query: 1 MKNHFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLD-LLRPVVRAPTVKYNRK 59
+K HF K WQ RV F+Q P +RP+VR PTV+Y+ K
Sbjct: 10 LKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTK 69
Query: 60 VRAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPR 119
VRAGRGF+L E++ AG+ ARTIGI+VD RR+N++ E L N+QRLKEY+SK+I+FPR
Sbjct: 70 VRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPR 129
Query: 120 KGKAPE-----AEQTLSAAASFPIVQPVTD----SETRAV--EDNGESAYRTLRLARSDK 168
K AP+ AE+ A V PV + + R + E+ A+ +LR+AR++
Sbjct: 130 KPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANA 189
Query: 169 RYKGI 173
R GI
Sbjct: 190 RLFGI 194
>At3g49010 [J] KOG3295 60S Ribosomal protein L13
Length = 206
Score = 122 bits (305), Expect = 4e-28
Identities = 74/181 (40%), Positives = 97/181 (52%), Gaps = 12/181 (6%)
Query: 4 HFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLD-LLRPVVRAPTVKYNRKVRA 62
HF+KHWQ VK F+Q P LRPVV T+KYN KVR
Sbjct: 11 HFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRT 70
Query: 63 GRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKGK 122
G+GFTL E+KAAG+ A TIGIAVDHRR+NR+ E L N+QRLK Y++K+++FPR+ +
Sbjct: 71 GKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRAR 130
Query: 123 -------APE--AEQTLSAAASFPIV--QPVTDSETRAVEDNGESAYRTLRLARSDKRYK 171
PE A T PIV +P + E A+ +RL R++KR+
Sbjct: 131 KVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHA 190
Query: 172 G 172
G
Sbjct: 191 G 191
>7297588 [J] KOG3295 60S Ribosomal protein L13
Length = 218
Score = 122 bits (305), Expect = 4e-28
Identities = 74/184 (40%), Positives = 101/184 (54%), Gaps = 15/184 (8%)
Query: 4 HFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLD-LLRPVVRAPTVKYNRKVRA 62
H+ K WQ VK F+Q P LRPVVR PT++Y+ K+RA
Sbjct: 12 HYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRA 71
Query: 63 GRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFP---- 118
GRGFTL E+K AG+ +A+TIGIAVD RR+N++ E NIQRLKEY+SK+I+FP
Sbjct: 72 GRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEK 131
Query: 119 --RKGKAPEAEQTLSAAASFPIVQPVTDSETRAVE-------DNGESAYRTLRLARSDKR 169
R G++ E L+ P++ P+ + + VE + A+ TLR AR+D R
Sbjct: 132 KIRAGESSLEECKLATQLKGPVL-PIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDAR 190
Query: 170 YKGI 173
GI
Sbjct: 191 LVGI 194
>At5g23900 [J] KOG3295 60S Ribosomal protein L13
Length = 206
Score = 117 bits (294), Expect = 7e-27
Identities = 73/182 (40%), Positives = 96/182 (52%), Gaps = 12/182 (6%)
Query: 3 NHFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLD-LLRPVVRAPTVKYNRKVR 61
+HFRKHWQ VK F+Q P LRPVV T+KYN KVR
Sbjct: 10 SHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVR 69
Query: 62 AGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKG 121
AG+GFTL E+K AG+ A TIGI+VDHRR+NR+ E L N+QRLK Y++K++VFPR+
Sbjct: 70 AGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRS 129
Query: 122 K-------APE--AEQTLSAAASFPI--VQPVTDSETRAVEDNGESAYRTLRLARSDKRY 170
+ PE A T PI V+ + + AY +RL R++ R+
Sbjct: 130 RQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARH 189
Query: 171 KG 172
G
Sbjct: 190 AG 191
>At3g48960 [J] KOG3295 60S Ribosomal protein L13
Length = 206
Score = 111 bits (277), Expect = 7e-25
Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 12/182 (6%)
Query: 4 HFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPL-DLLRPVVRAPTVKYNRKVRA 62
HF+K W+ VK F+Q P +RPVV A T+ YN KVRA
Sbjct: 11 HFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRA 70
Query: 63 GRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKGK 122
G+GFTL E+KAAG+ A TIGI+VDH R+NR+ E N+QRLK Y++K+++FPR +
Sbjct: 71 GKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCAR 130
Query: 123 ----APEAEQTLSAAAS-----FPIVQPVTDSETRAVEDNGE--SAYRTLRLARSDKRYK 171
A+Q L+ A PIV+ + E + + + +AY +RL +KR+
Sbjct: 131 TVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHA 190
Query: 172 GI 173
G+
Sbjct: 191 GV 192
>ECU03g0320 [J] KOG3295 60S Ribosomal protein L13
Length = 163
Score = 100 bits (249), Expect = 1e-21
Identities = 55/139 (39%), Positives = 74/139 (52%), Gaps = 1/139 (0%)
Query: 3 NHFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLDLLRPVVRAPTVKYNRKVRA 62
NHFRK ++++H D PL LRP+VR PT+KYNR R
Sbjct: 10 NHFRKT-SLKIRIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPTIKYNRNERL 68
Query: 63 GRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKGK 122
GRGFT AE + AGL +AR +GIAVD RR++ NQE D N++R+K Y KI ++ +
Sbjct: 69 GRGFTAAECEKAGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGKITIYESVKE 128
Query: 123 APEAEQTLSAAASFPIVQP 141
A E+ P V+P
Sbjct: 129 ARESGAKPYTKEIMPFVKP 147
>Hs14784147 [J] KOG3295 60S Ribosomal protein L13
Length = 144
Score = 78.6 bits (192), Expect = 5e-15
Identities = 36/79 (45%), Positives = 57/79 (71%)
Query: 47 PVVRAPTVKYNRKVRAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQR 106
P+VR P ++++ K +AGRG +L E++ AG+ A+TIGI+ D RR+N++ + L +QR
Sbjct: 31 PIVRCPMLRHHYKAQAGRGLSLEELRVAGIYKKVAQTIGISEDARRRNQSTQALQAKVQR 90
Query: 107 LKEYQSKIIVFPRKGKAPE 125
LKE +S +I+FPRK AP+
Sbjct: 91 LKEDRSSLILFPRKPLAPK 109
>Hs22045017 [J] KOG3295 60S Ribosomal protein L13
Length = 180
Score = 65.1 bits (157), Expect = 6e-11
Identities = 31/58 (53%), Positives = 43/58 (73%)
Query: 68 LAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKIIVFPRKGKAPE 125
L E+K AG+ A+T GI++D RR+N++ E L N+QRLKEY SK+I+FPRK AP+
Sbjct: 43 LEELKVAGIHKNVAQTTGISIDWRRRNKSTESLQGNVQRLKEYNSKLILFPRKPLAPK 100
>Hs17466264 [J] KOG3295 60S Ribosomal protein L13
Length = 161
Score = 35.4 bits (80), Expect = 0.047
Identities = 20/75 (26%), Positives = 31/75 (40%), Gaps = 22/75 (29%)
Query: 2 KNHFRKHWQERVKVHFDQAGXXXXXXXXXXXXXXXXXXXPLDLLRPVVRAPTVKYNRKVR 61
K+HF KHWQ V F+ +R V+Y+ KV
Sbjct: 11 KSHFNKHWQWCVATWFNHVWTHPAH----------------------IRCCMVRYHTKVH 48
Query: 62 AGRGFTLAEIKAAGL 76
AG+GF++ E++ G+
Sbjct: 49 AGQGFSMEELRVVGI 63
>CE04802 [DY] KOG0977 Nuclear envelope protein lamin intermediate filament
superfamily
Length = 568
Score = 33.9 bits (76), Expect = 0.14
Identities = 22/67 (32%), Positives = 32/67 (46%), Gaps = 5/67 (7%)
Query: 52 PTVKYN----RKVRAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRL 107
P V +N R + +GR + I +AG AYA+ + + R +EI DLN RL
Sbjct: 6 PRVAHNPVLSRIIESGRTNLPSGITSAGSLSAYAQAAAVTIRDNRDREKREIADLN-NRL 64
Query: 108 KEYQSKI 114
Y K+
Sbjct: 65 ARYVEKV 71
>CE07133 [DY] KOG0977 Nuclear envelope protein lamin intermediate filament
superfamily
Length = 443
Score = 29.3 bits (64), Expect = 3.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 58 RKVRAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEYQSKI 114
R + +GR I +G AYA+ + R+ EI DLN RL Y K+
Sbjct: 18 RIIESGRTNLPTGITTSGALSAYAQNAAAIIRDNREREKVEIADLN-NRLARYVEKV 73
>CE02945_2 [T] KOG4193 G protein-coupled receptors
Length = 832
Score = 29.3 bits (64), Expect = 3.4
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Query: 95 RNQEIL-DLNIQRLKEYQSKIIVFPRKGKAPEAEQTLSAAASFPIVQPVTDSE 146
RNQEI ++ + KE+ S+ I+ K A+ +++A S IVQP E
Sbjct: 137 RNQEIWGSWDVTKRKEFASRFILAAEKAMVASAKGMMTSAESNVIVQPAITVE 189
>Hs5032287 [NTZ] KOG4286 Dystrophin-like protein
Length = 3681
Score = 28.1 bits (61), Expect = 7.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 85 GIAVDHRRQNRNQ------EILDLNIQRLK--EYQSKIIVFPRKGKAPEAEQTLSAAASF 136
G+ D +Q Q E L +RL EYQ+ II F + + EQ + A ++
Sbjct: 791 GVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAF--YNQLQQLEQMTTTAENW 848
Query: 137 PIVQPVTDSETRAVE 151
+QP T SE A++
Sbjct: 849 LKIQPTTPSEPTAIK 863
>Hs5032285 [NTZ] KOG4286 Dystrophin-like protein
Length = 3562
Score = 28.1 bits (61), Expect = 7.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 85 GIAVDHRRQNRNQ------EILDLNIQRLK--EYQSKIIVFPRKGKAPEAEQTLSAAASF 136
G+ D +Q Q E L +RL EYQ+ II F + + EQ + A ++
Sbjct: 672 GVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAF--YNQLQQLEQMTTTAENW 729
Query: 137 PIVQPVTDSETRAVE 151
+QP T SE A++
Sbjct: 730 LKIQPTTPSEPTAIK 744
>Hs5032283 [NTZ] KOG4286 Dystrophin-like protein
Length = 3685
Score = 28.1 bits (61), Expect = 7.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 85 GIAVDHRRQNRNQ------EILDLNIQRLK--EYQSKIIVFPRKGKAPEAEQTLSAAASF 136
G+ D +Q Q E L +RL EYQ+ II F + + EQ + A ++
Sbjct: 795 GVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAF--YNQLQQLEQMTTTAENW 852
Query: 137 PIVQPVTDSETRAVE 151
+QP T SE A++
Sbjct: 853 LKIQPTTPSEPTAIK 867
>Hs5032281 [NTZ] KOG4286 Dystrophin-like protein
Length = 3677
Score = 28.1 bits (61), Expect = 7.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 85 GIAVDHRRQNRNQ------EILDLNIQRLK--EYQSKIIVFPRKGKAPEAEQTLSAAASF 136
G+ D +Q Q E L +RL EYQ+ II F + + EQ + A ++
Sbjct: 787 GVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAF--YNQLQQLEQMTTTAENW 844
Query: 137 PIVQPVTDSETRAVE 151
+QP T SE A++
Sbjct: 845 LKIQPTTPSEPTAIK 859
>At5g23710 [K] KOG3233 RNA polymerase III subunit C34
Length = 230
Score = 28.1 bits (61), Expect = 7.6
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 59 KVRAGRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLKEY 110
++ GRG T+ E+K PA T IA R++N +E+ ++N + +K Y
Sbjct: 29 RINQGRGATMFELKREKTIPATIVTRLIA-SLRKKNLIKEVANMNNKGVKHY 79
>7293663 [V] KOG2392 Serpin
Length = 442
Score = 28.1 bits (61), Expect = 7.6
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 1/61 (1%)
Query: 114 IIVFPRKG-KAPEAEQTLSAAASFPIVQPVTDSETRAVEDNGESAYRTLRLARSDKRYKG 172
I+V P++G K + L A PI+Q + RA EDN + +D KG
Sbjct: 291 IVVLPKRGFKLNDVANNLKALGLRPILQRLAAFRNRASEDNEVEVMMPKFVTATDFTLKG 350
Query: 173 I 173
+
Sbjct: 351 V 351
>At1g77800 [R] KOG0954 PHD finger protein
Length = 1506
Score = 27.7 bits (60), Expect = 9.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 63 GRGFTLAEIKAAGLTPAYARTIGIAVDHRRQNRNQEILDLNIQRLK 108
G G + E KA G ++ +A DH + +N +LD + K
Sbjct: 700 GNGIVVVEAKANGSVLKKEGSVSLAPDHSPEEKNSIVLDQKVHHGK 745
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,502,205
Number of Sequences: 60738
Number of extensions: 284698
Number of successful extensions: 802
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 32
length of query: 190
length of database: 30,389,216
effective HSP length: 100
effective length of query: 90
effective length of database: 24,315,416
effective search space: 2188387440
effective search space used: 2188387440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)