ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5723 good J KOG1762 Translation, ribosomal structure and biogenesis 60s acidic ribosomal protein P1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5723 1967635 1967318 -106
(106 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDL081c [J] KOG1762 60s acidic ribosomal protein P1 110 2e-25
SPCP1E11.09c [J] KOG1762 60s acidic ribosomal protein P1 80 5e-16
SPBC3B9.13c [J] KOG1762 60s acidic ribosomal protein P1 80 5e-16
SPAC644.15 [J] KOG1762 60s acidic ribosomal protein P1 79 8e-16
YDL130w [J] KOG1762 60s acidic ribosomal protein P1 73 6e-14
7296207 [J] KOG1762 60s acidic ribosomal protein P1 66 9e-12
CE26658 [J] KOG1762 60s acidic ribosomal protein P1 61 2e-10
Hs4506669 [J] KOG1762 60s acidic ribosomal protein P1 58 2e-09
At5g47700 [J] KOG1762 60s acidic ribosomal protein P1 57 6e-09
At1g01100 [J] KOG1762 60s acidic ribosomal protein P1 57 6e-09
At5g24510 [J] KOG1762 60s acidic ribosomal protein P1 55 2e-08
Hs18551340 [J] KOG1762 60s acidic ribosomal protein P1 54 4e-08
At4g00810 [J] KOG1762 60s acidic ribosomal protein P1 48 2e-06
>YDL081c [J] KOG1762 60s acidic ribosomal protein P1
Length = 106
Score = 110 bits (276), Expect = 2e-25
Identities = 60/106 (56%), Positives = 65/106 (60%)
Query: 1 MSVETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVK 60
MS E+ALSYAALILAD++IE+SSEKLL LT AANVPVE IWADIFAKAL QN+KDLLV
Sbjct: 1 MSTESALSYAALILADSEIEISSEKLLTLTNAANVPVENIWADIFAKALDGQNLKDLLVN 60
Query: 61 FXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
F SDDDMGFGLFD
Sbjct: 61 FSAGAAAPAGVAGGVAGGEAGEAEAEKEEEEAKEESDDDMGFGLFD 106
>SPCP1E11.09c [J] KOG1762 60s acidic ribosomal protein P1
Length = 109
Score = 80.1 bits (196), Expect = 5e-16
Identities = 46/105 (43%), Positives = 57/105 (53%), Gaps = 2/105 (1%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A SYAALILAD IE++S+KLL+LT+A NV VE IWA IFAKAL +++K+LL+
Sbjct: 5 ELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS 64
Query: 64 XXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SD+DMGFGLFD
Sbjct: 65 AGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c [J] KOG1762 60s acidic ribosomal protein P1
Length = 110
Score = 80.1 bits (196), Expect = 5e-16
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A SY+ALILAD IE++S+KLL+LT+AANV VE IWA IFAKAL +++K+LL+
Sbjct: 5 ELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64
Query: 64 XXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SD+DMGFGLFD
Sbjct: 65 AAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPAC644.15 [J] KOG1762 60s acidic ribosomal protein P1
Length = 109
Score = 79.3 bits (194), Expect = 8e-16
Identities = 46/105 (43%), Positives = 58/105 (54%), Gaps = 2/105 (1%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A SY+ALILAD IE++S+KLL+LT+AANV VE IWA IFAKAL +++K+LL+
Sbjct: 5 ELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64
Query: 64 XXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SD+DMGFGLFD
Sbjct: 65 GAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>YDL130w [J] KOG1762 60s acidic ribosomal protein P1
Length = 106
Score = 73.2 bits (178), Expect = 6e-14
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
++ +S+AA ILADA +E++S+ LL +T+AA V+ +WAD++AKAL +++K++L F
Sbjct: 3 DSIISFAAFILADAGLEITSDNLLTITKAAGANVDNVWADVYAKALEGKDLKEILSGFHN 62
Query: 64 XX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SDDDMGFGLFD
Sbjct: 63 AGPVAGAGAASGAAAAGGDAAAEEEKEEEAAEESDDDMGFGLFD 106
>7296207 [J] KOG1762 60s acidic ribosomal protein P1
Length = 112
Score = 65.9 bits (159), Expect = 9e-12
Identities = 39/107 (36%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A YA+LIL D D+ V+ EK+ + +AANV VE W +FAKAL N+KDL+
Sbjct: 6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGS 65
Query: 64 XXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SDDDMGFGLFD
Sbjct: 66 GVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112
>CE26658 [J] KOG1762 60s acidic ribosomal protein P1
Length = 111
Score = 61.2 bits (147), Expect = 2e-10
Identities = 36/106 (33%), Positives = 47/106 (43%), Gaps = 3/106 (2%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A YAALIL D ++ ++ EK+ L +AANV E W +FAKAL ++K+L+
Sbjct: 6 ELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSS 65
Query: 64 XXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SDDDMGFGLFD
Sbjct: 66 GAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>Hs4506669 [J] KOG1762 60s acidic ribosomal protein P1
Length = 114
Score = 58.2 bits (139), Expect = 2e-09
Identities = 38/109 (34%), Positives = 47/109 (42%), Gaps = 6/109 (5%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFX- 62
E A Y+ALIL D ++ V+ +K+ AL +AA V VE W +FAKALA NI L+
Sbjct: 6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGA 65
Query: 63 -----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SDDDMGFGLFD
Sbjct: 66 GGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>At5g47700 [J] KOG1762 60s acidic ribosomal protein P1
Length = 113
Score = 56.6 bits (135), Expect = 6e-09
Identities = 32/108 (29%), Positives = 46/108 (41%), Gaps = 5/108 (4%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A SYA +IL D I ++++K+ L +AA V +E W +FAK K+N+ DL++
Sbjct: 6 ELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGA 65
Query: 64 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXSDDDMGFGLFD 106
SD D+GFGLFD
Sbjct: 66 GGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113
>At1g01100 [J] KOG1762 60s acidic ribosomal protein P1
Length = 112
Score = 56.6 bits (135), Expect = 6e-09
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A SYA +IL D I ++++K+ L +AA V +E W +FAK K+N+ DL++
Sbjct: 6 ELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGA 65
Query: 64 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXSDDDMGFGLFD 106
SD D+GFGLFD
Sbjct: 66 GGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112
>At5g24510 [J] KOG1762 60s acidic ribosomal protein P1
Length = 111
Score = 55.1 bits (131), Expect = 2e-08
Identities = 27/56 (48%), Positives = 37/56 (65%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLV 59
E A +YAALIL D IE+++E + L + ANV VE W +FAK K+NI DL++
Sbjct: 5 ELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
>Hs18551340 [J] KOG1762 60s acidic ribosomal protein P1
Length = 96
Score = 53.9 bits (128), Expect = 4e-08
Identities = 36/101 (35%), Positives = 45/101 (43%), Gaps = 12/101 (11%)
Query: 6 ALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXXXX 65
A Y+ALIL D ++ V+ +K+ AL +AA V VE W +FAKALA NI L+
Sbjct: 8 ACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN----- 62
Query: 66 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 106
SDDDMG GLFD
Sbjct: 63 -------VGAGGPAPAEEKKVEAKKEESKESDDDMGLGLFD 96
>At4g00810 [J] KOG1762 60s acidic ribosomal protein P1
Length = 110
Score = 48.1 bits (113), Expect = 2e-06
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 4 ETALSYAALILADADIEVSSEKLLALTEAANVPVEGIWADIFAKALAKQNIKDLLVKFXX 63
E A SYA +IL D I ++ + L +AA V +E W +FAK K+N+ DL++
Sbjct: 6 ELACSYAVMILEDEGIAIT---IATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGA 62
Query: 64 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXSDDDMGFGLFD 106
SD D+GFGLFD
Sbjct: 63 GGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 110
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,203,001
Number of Sequences: 60738
Number of extensions: 61503
Number of successful extensions: 229
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 16
length of query: 106
length of database: 30,389,216
effective HSP length: 82
effective length of query: 24
effective length of database: 25,408,700
effective search space: 609808800
effective search space used: 609808800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)