ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5728 good R KOG2789 General function prediction only Putative Zn-finger protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5728 1969744 1968296 -483
(483 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR140w [R] KOG2789 Putative Zn-finger protein 472 e-133
SPBC25B2.03 [R] KOG2789 Putative Zn-finger protein 163 5e-40
At1g78420 [R] KOG2789 Putative Zn-finger protein 65 2e-10
>YMR140w [R] KOG2789 Putative Zn-finger protein
Length = 489
Score = 472 bits (1214), Expect = e-133
Identities = 255/504 (50%), Positives = 310/504 (60%), Gaps = 53/504 (10%)
Query: 1 MGNVPGKIDS--------PQDPANRKQQRSESLNFGSQGPKNLNRNRRATSLVGNLLSAS 52
MGNVPGKID P N S + + + R RR TSLV N+L+ +
Sbjct: 1 MGNVPGKIDQEDSFNDVRPDSSYNTTSSNSVIKQYDEEASSRV-RTRRTTSLVNNILNGN 59
Query: 53 GRARSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARQLVVKYNETVDGGFLAPFGCY 112
HA+QLVV+ +ETVDGGFLAPFGCY
Sbjct: 60 N--------ARTKTGSHLSSTSRRKTSREKELAKEAHAKQLVVRCSETVDGGFLAPFGCY 111
Query: 113 NFDKLDYEADIVKNLIIERRLAPFYTPLQEFDQTWTREEVIKIVDGLPLHCSFQQDPEEF 172
+F+KLDY+A +VKNLII+R+LAPFYTPLQ+FD++WTR+E+IKIVDGLPLH +F ++ EEF
Sbjct: 112 SFEKLDYDATVVKNLIIKRKLAPFYTPLQDFDESWTRDELIKIVDGLPLHDTFDENLEEF 171
Query: 173 EGVPTGDLADDEFDYLLDSTASKREQRRQRSKISKARLYFKRVGWQERANERYLELKLM- 231
E VP G+L F+ L+D + SK+EQRR +KI +ARLY KR+ WQE NE +LE KL
Sbjct: 172 EDVPIGNLRKSTFNELIDKSLSKKEQRRMHAKIFRARLYKKRILWQENENETFLERKLEM 231
Query: 232 ------------NKKHTEAKNPALPSDDLKYTLYKNGAECPICFLYFPKPLNISRCCKQP 279
N KN LPSDDLKYTLYKNG+ECPICFLYFP P N S+CC+QP
Sbjct: 232 KRIGSKSSNVEDNTSSQPRKNYHLPSDDLKYTLYKNGSECPICFLYFPGPFNYSKCCQQP 291
Query: 280 ICTECFVQIKRAAPHFPHEEVDPTQDQEPDELKDPNLLVSEPANCPYCATAEFGVTYEPR 339
ICTECFVQIKRA PHFPH+EVDPT+ Q D KDPNLL SEPANCPYCATA F +TY+P
Sbjct: 292 ICTECFVQIKRADPHFPHDEVDPTEPQTNDSEKDPNLLTSEPANCPYCATASFSITYQPP 351
Query: 340 RDVRTGINGIYASEYKIAEYKDREGLVSDSSSNEDDELVTIEQIRRGSIAADDPSVITSD 399
+ TGI G+ A Y YKD I R + S ITSD
Sbjct: 352 TNRETGIGGMPADSY---VYKD-------------------AAISRADGGQPNISAITSD 389
Query: 400 SIRPDWEINLTKERLRLARRSAKATAIHMSNQLIDPEHPSRHASISSSVGGPDGGNSPQR 459
+IRPDWEI L KER RL RRSA ATAIH+SN+LIDP H R + S D S R
Sbjct: 390 TIRPDWEIKLNKERARLMRRSANATAIHISNRLIDPSHSRRRNTSHSITPIHDESTSASR 449
Query: 460 R-QKTLEELDDEMLQQAIKLSLQD 482
+ T+ EL+D+M+++AI+LSL+D
Sbjct: 450 SPEPTINELEDQMVREAIRLSLED 473
>SPBC25B2.03 [R] KOG2789 Putative Zn-finger protein
Length = 554
Score = 163 bits (413), Expect = 5e-40
Identities = 127/409 (31%), Positives = 184/409 (44%), Gaps = 74/409 (18%)
Query: 92 QLVVKYNETVDGGFLAPFGCYNFDKLDYEADIVKNLIIERRLAPFYTPLQEFDQTWTREE 151
+L+ + VDGGFL P G Y+ Y+ +IV+ L++ERRL PFY L + + W ++
Sbjct: 15 ELIQHLVQLVDGGFLDPQGVYSSAPA-YKTNIVRKLMLERRLMPFYKGLDSYSKDWPADK 73
Query: 152 VIKIVD-------GLPLHCSFQQDPEEFEGVPTGDLADDEFDYLLDSTASKREQRRQRSK 204
V+++V+ LHC+ +Q G ++ + KR+ R
Sbjct: 74 VVEVVEKALGPHKSALLHCAIRQSRSLSVG---------------NTRSLKRDSRGSSDH 118
Query: 205 ISKARLYFKRVGWQERANERYLELKLMNKKHTEAKNPALPSDDLKYT----LYKNGAECP 260
+ + R+N P S D + T +Y N ECP
Sbjct: 119 LLT----------RNRSNS----------------TPGSISADYRTTAITTIYANAMECP 152
Query: 261 ICFLYFPKPLNISRCCKQPICTECFVQIKRAAPHFPHEEVDPTQDQEPDELKDPNLLVSE 320
ICFLY+P N +RCC QPIC+ECFV+I+RA PH P + E D L+SE
Sbjct: 153 ICFLYYPSNFNYTRCCAQPICSECFVEIRRAEPHLPTVHANEPTPNEFD-------LISE 205
Query: 321 PANCPYCATAEFGVTYEPRRDVR--TGINGIYASEYKIAEYKDREGLVSDSSSNEDDELV 378
PA CPYC T FGV Y+P + + N IA G +S SS +
Sbjct: 206 PAKCPYCMTERFGVIYKPNPKLTPFSFNNNPDTLPSNIAPM----GTLSKSSLPLHH--I 259
Query: 379 TIEQIRRGSIAADDPSVITSDSIRPDWEINLTKERLRLARRSAKATAIHMSNQLIDP--- 435
+ A DD +V+++D I PDW+ L + R R RR+A AT ++ P
Sbjct: 260 PWPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALRRAANATLLNSHLLETGPANA 319
Query: 436 --EHPSRHASISSSVGGPDGGNSPQRRQKTLEELDDEMLQQAIKLSLQD 482
H + + +S GGP S RRQ L ++ ML +AI+ SL D
Sbjct: 320 NANHNTDLSHDPTSHGGPRRTLS-SRRQHYLANVEQLMLAEAIRQSLLD 367
>At1g78420 [R] KOG2789 Putative Zn-finger protein
Length = 430
Score = 65.5 bits (158), Expect = 2e-10
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 34/260 (13%)
Query: 226 LELKLMNKKHTEAK-NPALPSDDLKYTLYKNGAECPICFLYFPKPLNISRCCKQPICTEC 284
+++K + K E+K P P DD + ECPICFLY+P LN SRCC + ICTEC
Sbjct: 28 VDVKKLRKLIVESKLAPCYPGDDESC---HDLEECPICFLYYPS-LNRSRCCMKSICTEC 83
Query: 285 FVQIKRAAPHFPHEEVDPTQDQEPDELK-DPNLLVSEPANCPYCATAEFGVTYEPRRDVR 343
F+Q+K PTQ + + P + CP+C T + V Y
Sbjct: 84 FLQMKNP------NSARPTQKFLINLMGFFPFVSSLTFMRCPFCKTPNYAVEY------- 130
Query: 344 TGINGIYASEYKIAEYKDREGLVSDSSSNEDDELVTIEQIRRGSIAADDPSVITSDSIRP 403
G+ + E K E + + ++ E+ E+ + + + S + ++
Sbjct: 131 ---RGVKSKEEKGIEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSS---TSAMTG 184
Query: 404 DWEINLTKERLRLARRSAKATAIHMSNQLIDPE-HPSRHASISSSVGGPDGGNSPQRRQK 462
+ E T L + AI ++ + D E PS++AS+ P G R +
Sbjct: 185 EMEYGSTSGFLFV----PWFAAISYNSLMDDGEIAPSQNASVVRQHSRPRG----NREDE 236
Query: 463 TLEELDDEMLQQAIKLSLQD 482
+L++ M+ +AI LS+Q+
Sbjct: 237 VDVDLEELMVMEAIWLSVQE 256
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,132,530
Number of Sequences: 60738
Number of extensions: 1285765
Number of successful extensions: 3958
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3944
Number of HSP's gapped (non-prelim): 6
length of query: 483
length of database: 30,389,216
effective HSP length: 110
effective length of query: 373
effective length of database: 23,708,036
effective search space: 8843097428
effective search space used: 8843097428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)