ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5753 good L KOG0011 Replication, recombination and repair Nucleotide excision repair factor NEF2, RAD23 component
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5753 1975786 1974638 -383
(383 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YEL037c [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23... 316 3e-86
SPBC2D10.12 [L] KOG0011 Nucleotide excision repair factor NEF2 R... 193 3e-49
At1g16190 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD... 145 1e-34
At5g38470 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD... 141 2e-33
Hs4826964 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD... 136 5e-32
Hs4506387 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD... 134 2e-31
7304320 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23... 125 8e-29
At3g02540 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD... 123 5e-28
At1g79650 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD... 118 2e-26
CE06606 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23... 110 3e-24
7301100 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23... 94 4e-19
Hs20533600 [L] KOG0011 Nucleotide excision repair factor NEF2 RA... 61 3e-09
Hs20542466 [L] KOG0011 Nucleotide excision repair factor NEF2 RA... 56 8e-08
>YEL037c [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 398
Score = 316 bits (810), Expect = 3e-86
Identities = 186/407 (45%), Positives = 240/407 (58%), Gaps = 38/407 (9%)
Query: 3 INFKDFKKEKLPIELADDATISHAKELIAEQKQCDASQIKLIYAGKILQDPKTVSGCNLK 62
+ FK+FKKEK+P++L TI K +A+ C+ SQIKLIY+GK+LQD KTVS C LK
Sbjct: 4 LTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 63 EGDQVIFMISKTKKKADVKVTESTTEPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
+GDQV+FM+S+ KK KVTE P+
Sbjct: 64 DGDQVVFMVSQ-KKSTKTKVTEPPIAPESATTPGRENSTEASPSTDASAAPAATAPEGSQ 122
Query: 123 XXQE--------EGTTDASFVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEY 174
+E E + FV G++RNET+ RIMEMGY RE+VERALRAAFNNPDRAVEY
Sbjct: 123 PQEEQTATTERTESASTPGFVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEY 182
Query: 175 LLMGIPE---ASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDNLFAQA----EAN 227
LLMGIPE EP QQ A A + A +E ED+LFAQA A+
Sbjct: 183 LLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQPA---------EDDLFAQAAQGGNAS 233
Query: 228 NGEQGHESAA--GLGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRET 285
+G G A G G+IGLT+ED+ LR VVSG PEAL PL E++S RYP LRE
Sbjct: 234 SGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREH 293
Query: 286 MLQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGA---------PPNV 336
++ +P+ F+S+LLEAVG ++ D + DD+ EG+ + G+ A V
Sbjct: 294 IMANPEVFVSMLLEAVGDNMQDVM--EGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQV 351
Query: 337 TISAEDEEAINRLCELGFERTLVVQIYFACDKNEEIAANMLFNNYAD 383
+ ED++AI+RLCELGFER LV+Q+YFACDKNEE AAN+LF+++AD
Sbjct: 352 DYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHAD 398
>SPBC2D10.12 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 368
Score = 193 bits (491), Expect = 3e-49
Identities = 126/387 (32%), Positives = 190/387 (48%), Gaps = 34/387 (8%)
Query: 1 MLINFKDFKKEKLPI-ELADDATISHAKELIAEQKQCDASQIKLIYAGKILQDPKTVSGC 59
M + FK+ +++K I +++ D IS KE I Q+ + + KLIY+G+IL D KTV
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 60 NLKEGDQVIFMISKTKKKADVKVTESTTEPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 119
N+KE D ++ M+S+ K + ++ P
Sbjct: 61 NIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAA 120
Query: 120 XX-----XXXQEEGTTDAS-FVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVE 173
E DA+ G+QRN V ++EMGY+R +VERA+RAAFNNPDRAVE
Sbjct: 121 AAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVEMGYERSEVERAMRAAFNNPDRAVE 180
Query: 174 YLLMGIPEASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGH 233
YLL GIPE ++Q+ E+ + A SE T NLF QA + E
Sbjct: 181 YLLTGIPE-DILNRQREESAAALAAQQQQSEALAPTS---TGQPANLFEQAALSENENQE 236
Query: 234 ESAAGLGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRF 293
+ + +G + +G + ++ QLR +V P+ L + + + P L + + Q+P+ F
Sbjct: 237 QPSNTVGDDPLGFL-RSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAF 295
Query: 294 ISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEEAINRLCELG 353
+ LL E AEG+ G Q + I+ E+ E+I+RLC+LG
Sbjct: 296 LQLLAEG-----------------AEGESALPSGGIQ-----IQITQEESESIDRLCQLG 333
Query: 354 FERTLVVQIYFACDKNEEIAANMLFNN 380
F+R +V+Q Y ACDKNEE+AAN LF +
Sbjct: 334 FDRNIVIQAYLACDKNEELAANYLFEH 360
>At1g16190 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 368
Score = 145 bits (366), Expect = 1e-34
Identities = 110/397 (27%), Positives = 176/397 (43%), Gaps = 46/397 (11%)
Query: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
M + K K I + TI K+ I + + D Q LI+ GK+L+D T+
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 58 GCNLKEGDQVIFMISKTKKKADVKVTESTTEPQDXXXXXXXXXXXXXXXXXXXXXXXXXX 117
+ E ++ M+SK+K + S+T+P
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAG--PSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASN 118
Query: 118 XXX-----XXXXQEEGTTDASFVTGSQRNETVNRIMEMG---YDREQVERALRAAFNNPD 169
G ++ V+GS + V +IMEMG +D+E V RALRAA+NNP+
Sbjct: 119 STPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPE 178
Query: 170 RAVEYLLMGIPEASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHED-NLFAQAEANN 228
RAV+YL GIPE T+ +G + E+ PS +LF Q
Sbjct: 179 RAVDYLYSGIPETV------TIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQ----- 227
Query: 229 GEQGHESAAGLGGEEMGTIGLTM--EDITQLRDVVSGRPEALMPLFESLSTRYPHLRETM 286
E+ + G ++GT+ + QLR +V+ P+ L P+ + L + P L +
Sbjct: 228 -----EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLI 282
Query: 287 LQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEEAI 346
++ F+ LL E GS +GD+ F Q P +V ++ E++E+I
Sbjct: 283 QENQAEFLQLLNEPYEGS--------------DGDVDIFDQPDQEMPHSVNVTPEEQESI 328
Query: 347 NRLCELGFERTLVVQIYFACDKNEEIAANMLFNNYAD 383
RL +GF+R +V++ + +CD+NEE+AAN L + AD
Sbjct: 329 ERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSAD 365
>At5g38470 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 378
Score = 141 bits (355), Expect = 2e-33
Identities = 115/396 (29%), Positives = 173/396 (43%), Gaps = 41/396 (10%)
Query: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD--ASQIKLIYAGKILQDPKTVSG 58
M I K IE+ +S K I K + A++ LI+ GK+L+D T+
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 59 CNLKEGDQVIFMISKTKKKADVKVTEST-----TEPQDXXXXXXXXXXXXXXXXXXXXXX 113
N+ E ++ M+SKTK T S T+PQ
Sbjct: 61 NNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTAT 120
Query: 114 XXXXXXXXXXXQEE-GTTDASFVTGSQRNETVNRIMEMG---YDREQVERALRAAFNNPD 169
+ G ++ V G+ TV +I++MG +DR+ V RALRAAFNNP+
Sbjct: 121 AAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPE 180
Query: 170 RAVEYLLMGIPEASE-PSQQQAEAVTSEAGANANSEVATDVPSQFTEHED----NLFAQA 224
RAVEYL GIP +E P QA A +A P+ T + NLF Q
Sbjct: 181 RAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQ- 239
Query: 225 EANNGEQGHESAAGLGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRE 284
G ++ AG G + + LR +V P+ L P+ + L + P L
Sbjct: 240 ----GMPAADAGAGAGNLDFLR---NSQQFQALRAMVQANPQILQPMLQELGKQNPQLVR 292
Query: 285 TMLQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEE 344
+ + F+ L+ E V G EN+ + + P VT++ E+ E
Sbjct: 293 LIQEHQADFLRLINEPVEGE------ENVMEQLEAA-----------MPQAVTVTPEERE 335
Query: 345 AINRLCELGFERTLVVQIYFACDKNEEIAANMLFNN 380
AI RL +GF+R +V++++FAC+KNEE+AAN L ++
Sbjct: 336 AIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDH 371
>Hs4826964 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 363
Score = 136 bits (343), Expect = 5e-32
Identities = 113/406 (27%), Positives = 170/406 (41%), Gaps = 74/406 (18%)
Query: 3 INFKDFKKEKLPIELADDATISHAKELIAEQKQCDASQI---KLIYAGKILQDPKTVSGC 59
I K +++ I + D T+ KE I +K DA + KLIYAGKIL D +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 60 NLKEGDQVIFMISKTK---------KKADVKVTESTTE-----------PQDXXXXXXXX 99
+ E + V+ M++KTK + + ES+T P
Sbjct: 65 RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSP 124
Query: 100 XXXXXXXXXXXXXXXXXXXXXXXXXQEEGTTDASFVTGSQRNETVNRIMEMGYDREQVER 159
+E+ + + VTGS+ + IM MGY+RE+V
Sbjct: 125 SEESAPTTSPESVSGSVPSSGSSGREEDAAS--TLVTGSEYETMLTEIMSMGYERERVVA 182
Query: 160 ALRAAFNNPDRAVEYLLMGIPEASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDN 219
ALRA++NNP RAVEYLL GIP + EP + S+ +E A + P +F +
Sbjct: 183 ALRASYNNPHRAVEYLLTGIPGSPEP--EHGSVQESQVSEQPATEAAGENPLEFLRDQ-- 238
Query: 220 LFAQAEANNGEQGHESAAGLGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRY 279
+R V+ P L L + L
Sbjct: 239 --------------------------------PQFQNMRQVIQQNPALLPALLQQLGQEN 266
Query: 280 PHLRETMLQDPQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPP--NVT 337
P L + + + ++FI +L E G L D + D EG++G G + AP +
Sbjct: 267 PQLLQQISRHQEQFIQMLNEP-PGELAD-----ISD--VEGEVGAIG---EEAPQMNYIQ 315
Query: 338 ISAEDEEAINRLCELGFERTLVVQIYFACDKNEEIAANMLFNNYAD 383
++ +++EAI RL LGF +LV+Q YFAC+KNE +AAN L + D
Sbjct: 316 VTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD 361
>Hs4506387 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 409
Score = 134 bits (338), Expect = 2e-31
Identities = 118/433 (27%), Positives = 168/433 (38%), Gaps = 76/433 (17%)
Query: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCDASQI---KLIYAGKILQDPKTVS 57
M + K +++ I++ + T+ KE I +K DA + KLIYAGKIL D +
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 GCNLKEGDQVIFMISK-----------TKKKADVK---VTESTT---------------- 87
+ E + V+ M++K T++ A VT STT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 88 ---------------EPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEGTTDA 132
EP + DA
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 133 S--FVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEYLLMGIPEASEPSQQQA 190
+ VTG V IM MGY+REQV ALRA+FNNPDRAVEYLLMGIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRE------ 234
Query: 191 EAVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAGLGGEEMGTIGLT 250
S+ D P + A A A + GG + +
Sbjct: 235 ------------SQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLR-N 281
Query: 251 MEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISLLLEAVGGSLTDSLG 310
Q+R ++ P L L + + P L + + Q + FI +L E V ++ G
Sbjct: 282 QPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV----QEAGG 337
Query: 311 ENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEEAINRLCELGFERTLVVQIYFACDKNE 370
+ G G + + G G + ++ +++EAI RL LGF LV+Q YFAC+KNE
Sbjct: 338 QGGGGGGGSGGIAEAGS---GHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNE 394
Query: 371 EIAANMLFNNYAD 383
+AAN L D
Sbjct: 395 NLAANFLLQQNFD 407
>7304320 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 414
Score = 125 bits (315), Expect = 8e-29
Identities = 113/428 (26%), Positives = 179/428 (41%), Gaps = 60/428 (14%)
Query: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD--ASQIKLIYAGKILQDPKTVSG 58
M+I K+ +++ IE A + T+ K+ I E++ + A + KLIYAG IL D +TV
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGS 60
Query: 59 CNLKEGDQVIFMI-----SKTKKKADVKVTESTTEPQDXXXX------------XXXXXX 101
N+ E ++ M+ S + + VK + T D
Sbjct: 61 YNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSKQSMPCEEANHTNSPSSTNTE 120
Query: 102 XXXXXXXXXXXXXXXXXXXXXXXQEEGTTDASFVTGSQRNETVNRIMEMGYDREQVERAL 161
+ +++ + G + N+TV ++EMGY REQVERA+
Sbjct: 121 DSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAM 180
Query: 162 RAAFNNPDRAVEYLLMGIP-----------EASEPS-----QQQAEAVTSEAGANANSEV 205
A++NNP+RAVEYL+ GIP E++ PS Q A A ++E +NS+
Sbjct: 181 AASYNNPERAVEYLINGIPAEEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSD- 239
Query: 206 ATDVPSQFTEHEDNLFAQAEA---NNGEQGHESAAGLGGEEMGTIGLTMED----ITQLR 258
P +F + F Q + N H +G + L E+ + L
Sbjct: 240 ----PFEFLRSQPQ-FLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLN 294
Query: 259 DVVSGRPEALMPLFESLSTRYPHLRETM---LQDPQRFISLLLEAVGGSLTDSLGENLGD 315
+ E+ + + R P + + D + S A G S G +
Sbjct: 295 QPIDRESESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGSAADN 354
Query: 316 DIAEGDLGDFGGQTQGAPPNVTISAEDEEAINRLCELGFERTLVVQIYFACDKNEEIAAN 375
+ E LG + ++ +D++AI RL LGF LV+Q YFAC+KNEE AAN
Sbjct: 355 EDLEQPLG---------VSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNEEQAAN 405
Query: 376 MLFNNYAD 383
L ++ D
Sbjct: 406 FLLSSSFD 413
>At3g02540 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 419
Score = 123 bits (308), Expect = 5e-28
Identities = 90/267 (33%), Positives = 127/267 (46%), Gaps = 42/267 (15%)
Query: 128 GTTDASFVTGSQRNETVNRIMEMG---YDREQVERALRAAFNNPDRAVEYLLMGIPEASE 184
G ++ GS T+ +I++MG +DRE V ALRAAFNNP+RAVEYL GIPE +E
Sbjct: 175 GQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAE 234
Query: 185 -PSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDN-----LFAQAEANNGEQGHESAAG 238
P + A AG AN T P+ N LF Q N G
Sbjct: 235 VPPVARPPA---SAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVG--------- 282
Query: 239 LGGEEMGTIGL--TMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISL 296
G GT+ + LR +V P+ L P+ + L + P+L + F+ L
Sbjct: 283 -GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRL 341
Query: 297 LLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPN---VTISAEDEEAINRLCELG 353
+ E V G G+ G+ GQ P + ++ E+ EAI RL +G
Sbjct: 342 INEPVEGG---------------GESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMG 386
Query: 354 FERTLVVQIYFACDKNEEIAANMLFNN 380
FER LV++++FAC+KNEE+AAN L ++
Sbjct: 387 FERALVLEVFFACNKNEELAANYLLDH 413
>At1g79650 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 367
Score = 118 bits (295), Expect = 2e-26
Identities = 107/394 (27%), Positives = 169/394 (42%), Gaps = 41/394 (10%)
Query: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
M + K K I + TI K+ I + + D Q LI+ GK+L+D ++
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 58 GCNLKEGDQVIFMISKTKK-----KADVKVTESTTEPQDXXXXXXXXXXXXXXXXXXXXX 112
+ E ++ M+SK+K +A V+
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQCVRLLLF--HSLFPLPHLRLSSIYNPVFTCS 118
Query: 113 XXXXXXXXXXXXQEEGTTDASFVTGSQRNETVNRIMEMG---YDREQVERALRAAFNNPD 169
G ++ V+GS + V +IMEMG +D+E V RALRAA+NNP+
Sbjct: 119 CFTYSCSRTTGTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPE 178
Query: 170 RAVEYLLMGIPEASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNG 229
RAV+YL GIP+ +E + EA + +GA A A+ P+ +LF Q
Sbjct: 179 RAVDYLYSGIPQTAEVAVPVPEAQIAGSGA-APVAPASGGPNSSPL---DLFPQ------ 228
Query: 230 EQGHESAAGLGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQD 289
E+ A G ++GT+ + +S P+ + L + P L + ++
Sbjct: 229 ----ETVAAAGSGDLGTLEFLRNNDQVAILTISAFSLNCEPMLQELGKQNPQLLRLIQEN 284
Query: 290 PQRFISLLLEAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEEAINRL 349
F+ L+ E GS EGD+ F Q P + ++ ++EAI RL
Sbjct: 285 QAEFLQLVNEPYEGS------------DGEGDM--FDQPEQEMPHAINVTPAEQEAIQRL 330
Query: 350 CELGFERTLVVQIYFACDKNEEIAANMLFNNYAD 383
+GF+R LV++ + ACD+NEE+AAN L N D
Sbjct: 331 EAMGFDRALVIEAFLACDRNEELAANYLLENSGD 364
>CE06606 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 372
Score = 110 bits (275), Expect = 3e-24
Identities = 102/382 (26%), Positives = 154/382 (39%), Gaps = 71/382 (18%)
Query: 3 INFKDFKKEKLPIELADDATISHAKELIAEQKQCD-ASQI-KLIYAGKILQDPKTVSGCN 60
+ F+ + +EL +D TI+ K L+A +K D A ++ KLIY GKIL D V
Sbjct: 54 VTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVG 113
Query: 61 LKEGDQVIFMISKTKKKADVKVTESTTEPQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
V+ M+SK K VTE P
Sbjct: 114 FDSSKFVVVMLSKRK------VTE--VAPSSTVATAAEPVPVAAAPASNPAPAADVAPEA 165
Query: 121 XXXXQEEGTTDASFVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEYLLMGIP 180
+ E TD ++ E V I MGYDREQ ALRAAF NPDRAVE+LL G+P
Sbjct: 166 AAPAEAEALTD-------EQEENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLP 218
Query: 181 EASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAGLG 240
+ + + E +L + +N ++ G
Sbjct: 219 DDA------------------------------ADQEPDLGPEQNIDNVDED-------G 241
Query: 241 GEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISLLLEA 300
+++ + M + ++R ++ PE L + + L+ P L +T+ + Q F+ LL
Sbjct: 242 NDDLNMLA-NMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLL--- 297
Query: 301 VGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEEAINRL--CELGFERTL 358
N G A G+ + + +S E+ AI R+ + +
Sbjct: 298 -----------NGGAQGAGAAAGNAPERNTPRRHVIHLSPEEAAAIERIKAIVVNAPEAV 346
Query: 359 VVQIYFACDKNEEIAANMLFNN 380
VV+ YFACDKNEE A N +F+N
Sbjct: 347 VVEAYFACDKNEEAAINFIFSN 368
>7301100 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 290
Score = 93.6 bits (231), Expect = 4e-19
Identities = 89/379 (23%), Positives = 158/379 (41%), Gaps = 100/379 (26%)
Query: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQC--DASQIKLIYAGKILQDPKTVSG 58
M ++ + + + +E+ + + K+ + + A ++LIY+G+I++D +S
Sbjct: 1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEVAMPAENLQLIYSGRIMEDAMPLSE 60
Query: 59 CNLKEGDQVIFMISKTKKKADVKVTESTTEPQDXXXXXXXXXXXXXXXXXXXXXXXXXXX 118
+ E D++I ++ K KK D E P
Sbjct: 61 YRIAE-DKIIVLMGK--KKVDKSSPEEKVAPTPPLAAGPNVLR----------------- 100
Query: 119 XXXXXXQEEGTTDASFVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEYLLMG 178
T+ + + ++ V+ +M MGY E+V ALRA+FN+P+RA+EYL+ G
Sbjct: 101 -----------TEDVVPSLAPNDQWVSDLMSMGYGEEEVRSALRASFNHPERAIEYLING 149
Query: 179 IPEASEPSQQQAEAVTSEAGANANSEVATDVPSQFTEHEDNLFAQAEANNGEQGHESAAG 238
IP+ V SE G A V T +Q + A
Sbjct: 150 IPQE----------VVSEQGLAAIPSVQTS---------------------DQLQQLMAD 178
Query: 239 LGGEEMGTIGLTMEDITQLRDVVSGRPEALMPLFESLSTRYPHLRETMLQDPQRFISLLL 298
L +IT++R++++ PE + L L+ P E ++ + ++++
Sbjct: 179 L-------------NITRMREMINQNPELIHRLMNRLAETDPATFEVFQRNQEELMNMI- 224
Query: 299 EAVGGSLTDSLGENLGDDIAEGDLGDFGGQTQGAPPNVTISAEDEEAINRLCELGFERTL 358
+ G S T + E+L +T++AE+ A+ RL LGFER +
Sbjct: 225 -SGGASRTPNEIEHL---------------------QITLTAEETAAVGRLEALGFERVM 262
Query: 359 VVQIYFACDKNEEIAANML 377
VQ Y ACDK+E++AA +L
Sbjct: 263 AVQAYLACDKDEQLAAEVL 281
>Hs20533600 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 373
Score = 60.8 bits (146), Expect = 3e-09
Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 132 ASFVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEYLLMGIP 180
++ V G + V IM MGY+REQV A RA+ NNPDRAVEYLLMGIP
Sbjct: 184 SALVMGQSYDNMVTEIMSMGYEREQVIAAPRASSNNPDRAVEYLLMGIP 232
>Hs20542466 [L] KOG0011 Nucleotide excision repair factor NEF2 RAD23 component
Length = 125
Score = 56.2 bits (134), Expect = 8e-08
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 132 ASFVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEYLLMGIP 180
++ V G V +M MGY +EQ ALRA F+NPDRAV+YLL+GIP
Sbjct: 49 STLVKGQSNENMVTEVMSMGYTQEQAIVALRAIFSNPDRAVQYLLIGIP 97
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.130 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,803,569
Number of Sequences: 60738
Number of extensions: 771568
Number of successful extensions: 2133
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2075
Number of HSP's gapped (non-prelim): 28
length of query: 383
length of database: 30,389,216
effective HSP length: 108
effective length of query: 275
effective length of database: 23,829,512
effective search space: 6553115800
effective search space used: 6553115800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)