ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5862 good AJ KOG3387 RNA processing and modification 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
r_klactV5862 good AJ KOG3387 Translation, ribosomal structure and biogenesis 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5862 2010162 2010539 126
(126 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YEL026w [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A... 200 3e-52
SPAC607.03c [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2... 163 4e-41
At5g20160 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L... 162 7e-41
At4g22380 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L... 161 1e-40
At4g12600 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L... 160 3e-40
CE02283 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A... 158 1e-39
Hs4826860 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L... 149 5e-37
7297543 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A... 144 2e-35
ECU07g0460 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/... 75 1e-14
Hs22047689_1 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP... 68 2e-12
Hs8923444 [A] KOG3167 Box H/ACA snoRNP component involved in rib... 67 4e-12
YDL208w [A] KOG3167 Box H/ACA snoRNP component involved in ribos... 65 2e-11
SPAC1782.10c [A] KOG3167 Box H/ACA snoRNP component involved in ... 60 4e-10
At5g08180 [A] KOG3167 Box H/ACA snoRNP component involved in rib... 56 7e-09
CE19186 [A] KOG3167 Box H/ACA snoRNP component involved in ribos... 54 3e-08
7294353 [A] KOG3167 Box H/ACA snoRNP component involved in ribos... 49 1e-06
>YEL026w [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 126
Score = 200 bits (508), Expect = 3e-52
Identities = 106/126 (84%), Positives = 110/126 (87%)
Query: 1 MSAPNPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXX 60
MSAPNPKAFPLADA L+QQILDVVQQA+N+RQLKKGANEATKTLNRGISEFIIMAAD
Sbjct: 1 MSAPNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEP 60
Query: 61 XXXXXXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDK 120
EDKNVPYVFVPSR ALGRACGVSRPVIAASITTNDASAIK+QIYAVKDK
Sbjct: 61 IEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDK 120
Query: 121 IETLLI 126
IETLLI
Sbjct: 121 IETLLI 126
>SPAC607.03c [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 125
Score = 163 bits (412), Expect = 4e-41
Identities = 86/122 (70%), Positives = 98/122 (79%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKAFPLAD+ L+QQILD+VQQAS+ +QL+KGANEATKTLNRGISEFI+MAAD
Sbjct: 4 NPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEIL 63
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFVPS+ ALGRACGVSRPVI+ASITTN+AS + QI A+K IE L
Sbjct: 64 LHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKL 123
Query: 125 LI 126
LI
Sbjct: 124 LI 125
>At5g20160 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 128
Score = 162 bits (410), Expect = 7e-41
Identities = 83/122 (68%), Positives = 97/122 (79%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKA+PLAD+ LS ILD+VQQA+N +QLKKGANEATKTLNRGISEF++MAAD
Sbjct: 7 NPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEIL 66
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +KSQI +KD IE L
Sbjct: 67 LHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126
Query: 125 LI 126
LI
Sbjct: 127 LI 128
>At4g22380 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 128
Score = 161 bits (408), Expect = 1e-40
Identities = 82/122 (67%), Positives = 97/122 (79%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKA+PLAD+ LS I+D+VQQA+N +QLKKGANEATKTLNRGISEF++MAAD
Sbjct: 7 NPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEIL 66
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFVPS+ ALGRACGV+RPVIA S+T+N+AS +KSQI +KD IE L
Sbjct: 67 LHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126
Query: 125 LI 126
LI
Sbjct: 127 LI 128
>At4g12600 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 128
Score = 160 bits (404), Expect = 3e-40
Identities = 83/122 (68%), Positives = 96/122 (78%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKA+PLAD+ LS ILD+VQQA+N +QLKKGANEATKTLNRGISEFI+MAAD
Sbjct: 7 NPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEIL 66
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFVPS+ ALGRAC V+RPVIA S+T+N+AS +KSQI +KD IE L
Sbjct: 67 LHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEKL 126
Query: 125 LI 126
LI
Sbjct: 127 LI 128
>CE02283 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 128
Score = 158 bits (399), Expect = 1e-39
Identities = 81/122 (66%), Positives = 94/122 (76%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKAFPLAD LSQ+++D+VQQA N +QLKKGANEATKTLNRGISE I+MAAD
Sbjct: 7 NPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEIL 66
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFV S+ ALGRACGV+RPVIAASIT N+ S +KSQI +K+ +E L
Sbjct: 67 LHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKL 126
Query: 125 LI 126
LI
Sbjct: 127 LI 128
>Hs4826860 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 128
Score = 149 bits (377), Expect = 5e-37
Identities = 75/122 (61%), Positives = 93/122 (75%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKA+PLADA L++++LD+VQQ+ N +QL+KGANEATKTLNRGISEFI+MAAD
Sbjct: 7 NPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEII 66
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFV S+ ALGRACGVSRPVIA S+T + S +K QI +++ IE L
Sbjct: 67 LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
Query: 125 LI 126
L+
Sbjct: 127 LV 128
>7297543 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 160
Score = 144 bits (363), Expect = 2e-35
Identities = 69/122 (56%), Positives = 93/122 (75%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKAFPLADA L+ +I++++QQA N QL+KGANEATKTLNRG+++ +++A D
Sbjct: 39 NPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEIL 98
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETL 124
EDKNVPYVFV S+ ALGRACGVSRP++A S+TTN+ S +KSQI +++ +IE L
Sbjct: 99 LHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERL 158
Query: 125 LI 126
L+
Sbjct: 159 LV 160
>ECU07g0460 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 120
Score = 75.1 bits (183), Expect = 1e-14
Identities = 38/93 (40%), Positives = 57/93 (60%), Gaps = 1/93 (1%)
Query: 10 PLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXXXXXXX 69
P++D + Q IL ++Q A+ R +KKG NE+TK L++GI+ +++A D
Sbjct: 9 PVSDEKV-QSILRLIQSATRSRNIKKGINESTKCLSKGIALLVVIACDVEPQEITALLPI 67
Query: 70 XXEDKNVPYVFVPSRTALGRACGVSRPVIAASI 102
EDK V +V VPS+ ALG ACG+ RP+ A +I
Sbjct: 68 ICEDKGVSFVHVPSKDALGVACGIDRPIAACTI 100
>Hs22047689_1 [AJ] KOG3387 60S ribosomal protein 15.5kD/SNU13 NHP2/L7A family
(includes ribonuclease P subunit p38) involved in
splicing
Length = 387
Score = 67.8 bits (164), Expect = 2e-12
Identities = 41/84 (48%), Positives = 50/84 (58%), Gaps = 11/84 (13%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NPKA+PLAD L++++LD+ K A EATKTL+RGIS FI+ AAD
Sbjct: 7 NPKAYPLADVHLTKKLLDL-----------KEAKEATKTLSRGISGFIVGAADAKLLEII 55
Query: 65 XXXXXXXEDKNVPYVFVPSRTALG 88
EDKNV YVFV S+ ALG
Sbjct: 56 LHLQLLCEDKNVFYVFVCSKQALG 79
>Hs8923444 [A] KOG3167 Box H/ACA snoRNP component involved in ribosomal RNA
pseudouridinylation
Length = 153
Score = 67.0 bits (162), Expect = 4e-12
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXX 64
NP A PLA L++++ +++A +Q+++G E K +N+G +++A D
Sbjct: 32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVY 91
Query: 65 XXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTND 106
ED+N+PYV++PS+T LG A G RP + ++
Sbjct: 92 CHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHE 133
>YDL208w [A] KOG3167 Box H/ACA snoRNP component involved in ribosomal RNA
pseudouridinylation
Length = 173
Score = 64.7 bits (156), Expect = 2e-11
Identities = 33/96 (34%), Positives = 50/96 (51%)
Query: 1 MSAPNPKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXX 60
M A P A PLA L++++L V++AS + +K+G E K L +G +++A D
Sbjct: 41 MPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISP 100
Query: 61 XXXXXXXXXXXEDKNVPYVFVPSRTALGRACGVSRP 96
ED +VPY+F+PS+ LG A RP
Sbjct: 101 ADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRP 136
>SPAC1782.10c [A] KOG3167 Box H/ACA snoRNP component involved in ribosomal RNA
pseudouridinylation
Length = 154
Score = 60.5 bits (145), Expect = 4e-10
Identities = 32/120 (26%), Positives = 54/120 (44%)
Query: 6 PKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXXX 65
P A PLA L+++++ V++AS + + +G E K + +G +I+A D
Sbjct: 27 PIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVIS 86
Query: 66 XXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLL 125
ED NVPY++ S+ LG A RP I S++ K+ E ++
Sbjct: 87 HIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEII 146
>At5g08180 [A] KOG3167 Box H/ACA snoRNP component involved in ribosomal RNA
pseudouridinylation
Length = 156
Score = 56.2 bits (134), Expect = 7e-09
Identities = 34/128 (26%), Positives = 57/128 (43%), Gaps = 9/128 (7%)
Query: 6 PKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADXXXXXXXX 65
P A PLA L ++ ++Q+A+ + LK+G E K++ RG ++A +
Sbjct: 24 PIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 83
Query: 66 XXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIA---------ASITTNDASAIKSQIYA 116
E+ VPYV+VPS+ L +A RP +T + + +K+
Sbjct: 84 HLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQ 143
Query: 117 VKDKIETL 124
V D I+ L
Sbjct: 144 VSDDIKEL 151
>CE19186 [A] KOG3167 Box H/ACA snoRNP component involved in ribosomal RNA
pseudouridinylation
Length = 163
Score = 54.3 bits (129), Expect = 3e-08
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 5 NPKAFPLADATLSQQILDVVQQAS-NMRQLKKGANEATKTLNRGISEFIIMAADXXXXXX 63
NP A PLA+ L++++ ++++AS + L++G + K L R I+A +
Sbjct: 40 NPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDV 99
Query: 64 XXXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVI 98
E+K +PYV++PSR LG A G RP I
Sbjct: 100 YSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPSI 134
>7294353 [A] KOG3167 Box H/ACA snoRNP component involved in ribosomal RNA
pseudouridinylation
Length = 160
Score = 48.9 bits (115), Expect = 1e-06
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 5 NPKAFPLADATLSQQILDVVQQASNMRQ-LKKGANEATKTLNRGISEFIIMAADXXXXXX 63
N A P+A L+++ +V++A + L+ G + L +G + I A D
Sbjct: 38 NAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDI 97
Query: 64 XXXXXXXXEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIET 123
E+K +PY + PSR LG A GV R +A + N+ K VK+++
Sbjct: 98 MCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNE--EYKDLYDEVKEELSA 155
Query: 124 LLI 126
L I
Sbjct: 156 LNI 158
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,214,433
Number of Sequences: 60738
Number of extensions: 134898
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 16
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 16
length of query: 126
length of database: 30,389,216
effective HSP length: 102
effective length of query: 24
effective length of database: 24,193,940
effective search space: 580654560
effective search space used: 580654560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)