ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5871 good C KOG1671 Energy production and conversion Ubiquinol cytochrome c reductase, subunit RIP1
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5871 2014172 2014810 213
(213 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YEL024w [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 349 1e-96
SPBC16H5.06 [C] KOG1671 Ubiquinol cytochrome c reductase subunit... 266 2e-71
7296058 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 231 4e-61
Hs5174743 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 226 1e-59
At5g13430 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 214 9e-56
At5g13440 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 213 2e-55
Hs13655145 [C] KOG1671 Ubiquinol cytochrome c reductase subunit ... 205 4e-53
CE17071 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 188 5e-48
7296057 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 113 2e-25
Hs20556670 [C] KOG1671 Ubiquinol cytochrome c reductase subunit ... 82 4e-16
Hs20540928 [C] KOG1671 Ubiquinol cytochrome c reductase subunit ... 72 7e-13
At4g03280 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1 55 5e-08
>YEL024w [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 215
Score = 349 bits (896), Expect = 1e-96
Identities = 169/215 (78%), Positives = 187/215 (86%), Gaps = 2/215 (0%)
Query: 1 MLGLRNGLKTGLK--SVAPARLISTSAVAAKSTYRTPDFGDYIKENNDADKGRSYAYFMV 58
MLG+R+ +KT K S+ RLIS S +A+KSTYRTP+F D +KENNDADKGRSYAYFMV
Sbjct: 1 MLGIRSSVKTCFKPMSLTSKRLISQSLLASKSTYRTPNFDDVLKENNDADKGRSYAYFMV 60
Query: 59 XXXXXXXXXXXKSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRH 118
KSTVETFI+SM+A+ADVLAMAKVEVNLAAIP GKNVVVKWQGKPVFIRH
Sbjct: 61 GAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRH 120
Query: 119 RTDHEIQEANSVDMSALKDPQTDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPC 178
RT HEIQEANSVDMSALKDPQTD+DRV+ P+WL+MLGICTHLGCVPIGE+GDFGGWFCPC
Sbjct: 121 RTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPC 180
Query: 179 HGSHYDISGRIRKGPAPLNLEIPQYEFDGENLIVG 213
HGSHYDISGRIRKGPAPLNLEIP YEFDG+ +IVG
Sbjct: 181 HGSHYDISGRIRKGPAPLNLEIPAYEFDGDKVIVG 215
>SPBC16H5.06 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 228
Score = 266 bits (679), Expect = 2e-71
Identities = 122/179 (68%), Positives = 144/179 (80%), Gaps = 1/179 (0%)
Query: 35 PDFGDYIKENNDADKGRSYAYFMVXXXXXXXXXXXKSTVETFIASMSASADVLAMAKVEV 94
PDF +Y + + D+ R +Y MV ++TV F+AS SASADVLAM+K EV
Sbjct: 51 PDFSEY-QTKSTGDRSRVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEV 109
Query: 95 NLAAIPEGKNVVVKWQGKPVFIRHRTDHEIQEANSVDMSALKDPQTDSDRVQKPEWLVML 154
+L+ IPEGKN+VVKWQGKPVFIRHRT EIQEANSVD+S L+DPQ DSDRVQKPEWLVM+
Sbjct: 110 DLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMI 169
Query: 155 GICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPQYEFDGENLIVG 213
G+CTHLGCVPIGE+GD+GGWFCPCHGSHYDISGRIR+GPAPLNL IP Y F+G +I+G
Sbjct: 170 GVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTFEGSKIIIG 228
>7296058 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 230
Score = 231 bits (590), Expect = 4e-61
Identities = 113/213 (53%), Positives = 147/213 (68%), Gaps = 9/213 (4%)
Query: 8 LKTGLKSVAPARLISTSAVAAKSTYRTPDFGDYIKE--------NNDADKGRSYAYFMVX 59
L TGLK+ A + S + A + + PDF Y +E N+ A++ ++++Y MV
Sbjct: 17 LSTGLKASGVA-VNSMANRQAHTDLQVPDFSAYRRESVKDSRRRNDTAEERKAFSYLMVG 75
Query: 60 XXXXXXXXXXKSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHR 119
K V TFI SMSASA+VLAMAK+E+ L+ IPEGK+V KW+GKP+FIRHR
Sbjct: 76 AGAVGGAYAAKGLVNTFIGSMSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHR 135
Query: 120 TDHEIQEANSVDMSALKDPQTDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCH 179
T EI+ +V S L+DP+ D RV KPEWLV++G+CTHLGCVPI +GD+GG++CPCH
Sbjct: 136 TAAEIETERNVPTSTLRDPEADDQRVIKPEWLVVIGVCTHLGCVPIANAGDWGGYYCPCH 195
Query: 180 GSHYDISGRIRKGPAPLNLEIPQYEFDGENLIV 212
GSHYD SGRIRKGPAPLNLE+P +EF E L+V
Sbjct: 196 GSHYDASGRIRKGPAPLNLEVPTHEFPNEGLLV 228
>Hs5174743 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 274
Score = 226 bits (577), Expect = 1e-59
Identities = 100/203 (49%), Positives = 144/203 (70%), Gaps = 13/203 (6%)
Query: 21 ISTSAVAAKSTYRTPDFGDY-----------IKENNDADKGRSYAYFMVXXXXXXXXXXX 69
+ S + + + PDF +Y +E+++A KG ++Y +
Sbjct: 72 VPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKG--FSYLVTGVTTVGVAYAA 129
Query: 70 KSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHRTDHEIQEANS 129
K+ V F++SMSASADVLA+AK+E+ L+ IPEGKN+ KW+GKP+F+RHRT EI++ +
Sbjct: 130 KNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAA 189
Query: 130 VDMSALKDPQTDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRI 189
V++S L+DPQ D DRV+KPEW++++G+CTHLGCVPI +GDFGG++CPCHGSHYD SGRI
Sbjct: 190 VELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRI 249
Query: 190 RKGPAPLNLEIPQYEFDGENLIV 212
R GPAPLNLE+P YEF +++++
Sbjct: 250 RLGPAPLNLEVPTYEFTSDDMVI 272
>At5g13430 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 274
Score = 214 bits (544), Expect = 9e-56
Identities = 108/211 (51%), Positives = 140/211 (66%), Gaps = 4/211 (1%)
Query: 4 LRNGLKTGLKSVAPARLISTSAVAAKSTYRTPDFGDYIKENNDADKGRSYAYFMVXXXXX 63
L G + G S PA + + +K Y + Y D K R++AYF++
Sbjct: 67 LAQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERY--PPGDPSK-RAFAYFVLSGGRF 123
Query: 64 XXXXXXKSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHRTDHE 123
+ V I SMSAS DVLA+A +EV+L +I G V VKW+GKPVFIR RT+ +
Sbjct: 124 VYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDD 183
Query: 124 IQEANSVDMSALKDPQTDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCHGSHY 183
I+ ANSVD+ +L+DPQ DS RV+ PEWLV++G+CTHLGC+P+ +GD+GGWFCPCHGSHY
Sbjct: 184 IKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHY 243
Query: 184 DISGRIRKGPAPLNLEIPQYEFDGEN-LIVG 213
DISGRIRKGPAP NLE+P Y F EN L++G
Sbjct: 244 DISGRIRKGPAPYNLEVPTYSFLEENKLLIG 274
>At5g13440 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 274
Score = 213 bits (541), Expect = 2e-55
Identities = 106/211 (50%), Positives = 140/211 (66%), Gaps = 4/211 (1%)
Query: 4 LRNGLKTGLKSVAPARLISTSAVAAKSTYRTPDFGDYIKENNDADKGRSYAYFMVXXXXX 63
+ G + G S PA + + +K Y + Y D K R++AYF++
Sbjct: 67 ITQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERY--PPGDPSK-RAFAYFVLSGGRF 123
Query: 64 XXXXXXKSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHRTDHE 123
+ V I SMSAS DVLA+A +EV+L +I G V VKW+GKPVFIR RT+ +
Sbjct: 124 VYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDD 183
Query: 124 IQEANSVDMSALKDPQTDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCHGSHY 183
I+ ANSVD+ +L+DPQ DS RV+ PEWL+++G+CTHLGC+P+ +GD+GGWFCPCHGSHY
Sbjct: 184 IKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCPCHGSHY 243
Query: 184 DISGRIRKGPAPLNLEIPQYEFDGEN-LIVG 213
DISGRIRKGPAP NLE+P Y F EN L++G
Sbjct: 244 DISGRIRKGPAPYNLEVPTYSFLEENKLLIG 274
>Hs13655145 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 135
Score = 205 bits (521), Expect = 4e-53
Identities = 85/133 (63%), Positives = 114/133 (84%)
Query: 80 MSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHRTDHEIQEANSVDMSALKDPQ 139
MSASADVLA+AK+E+ L+ IPEGKN+ KW+GKP+F+RHRT EI++ +V++S L+DPQ
Sbjct: 1 MSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQ 60
Query: 140 TDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRIRKGPAPLNLE 199
D DRV+KPEW++++G+CTHLGCVPI +GDFGG++CPCHGSHYD SGRIR GPA LNLE
Sbjct: 61 HDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPATLNLE 120
Query: 200 IPQYEFDGENLIV 212
+P YEF +++++
Sbjct: 121 VPTYEFTSDDMVI 133
>CE17071 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 276
Score = 188 bits (477), Expect = 5e-48
Identities = 78/144 (54%), Positives = 109/144 (75%)
Query: 70 KSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHRTDHEIQEANS 129
K V+T ++ + +AD A+A +E+N+A IPEGK +W+GKPVF++HRT EI + +
Sbjct: 131 KEVVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVFVKHRTKAEIAKEKA 190
Query: 130 VDMSALKDPQTDSDRVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRI 189
V ++ L+ PQ D +RVQK EW V++G+CTHLGCVPI ++GD+GG++CPCHGSHYD SGRI
Sbjct: 191 VPVADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPIADAGDYGGYYCPCHGSHYDASGRI 250
Query: 190 RKGPAPLNLEIPQYEFDGENLIVG 213
RKGPAPLNL +P Y F +++G
Sbjct: 251 RKGPAPLNLHVPAYSFKDATIVIG 274
>7296057 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 260
Score = 113 bits (282), Expect = 2e-25
Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 14/166 (8%)
Query: 8 LKTGLKSVAPARLISTSAVAAKSTYRTPDFGDYIKE--------NNDADKGRSYAYFMVX 59
L TGLK+ A + S + A + + PDF Y +E N+ A++ ++++Y MV
Sbjct: 17 LSTGLKASGVA-VNSMANRQAHTDLQVPDFSAYRRESVKDSRRRNDTAEERKAFSYLMVG 75
Query: 60 XXXXXXXXXXKSTVETFIASMSASADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHR 119
K V TFI SMSASA+VLAMAK+E+ L+ IPEGK+V KW+GKP+FIRHR
Sbjct: 76 AGAVGGAYAAKGLVNTFIGSMSASAEVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHR 135
Query: 120 TDHEIQEANSVDMSALKDPQTDSDRVQKPEW---LVMLGICTHLGC 162
T EI+ +V S L+DP+ D V EW L++L I + C
Sbjct: 136 TAAEIETERNVPTSTLRDPEADD--VGTVEWVDSLMLLPISSLATC 179
>Hs20556670 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 151
Score = 82.4 bits (202), Expect = 4e-16
Identities = 34/62 (54%), Positives = 43/62 (68%)
Query: 151 LVMLGICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPQYEFDGENL 210
L G+C LG V +GD G ++CPCHGSHYD GRIRKGPAP NLE+P YEF ++
Sbjct: 88 LAFSGVCIRLGYVLTAFAGDSGNYYCPCHGSHYDAFGRIRKGPAPPNLEVPSYEFTSVDI 147
Query: 211 IV 212
++
Sbjct: 148 VI 149
>Hs20540928 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 160
Score = 71.6 bits (174), Expect = 7e-13
Identities = 54/189 (28%), Positives = 77/189 (40%), Gaps = 68/189 (35%)
Query: 35 PDFGDYI-----------KENNDADKGRSYAYFMVXXXXXXXXXXXKSTVETFIASMSAS 83
PDF DY KE+ +A KG ++Y + K+ + F++S+SAS
Sbjct: 27 PDFPDYCCIEIFDGTKSSKEDGEARKG--FSYLVTATTAVGVTYAAKNVISQFVSSISAS 84
Query: 84 ADVLAMAKVEVNLAAIPEGKNVVVKWQGKPVFIRHRTDHEIQEANSVDMSALKDPQTDSD 143
AD A++K+ + L IPEGKN+ KW+GK +FI V ++AL TD+
Sbjct: 85 ADESAVSKIAIKLFDIPEGKNMAFKWRGKSLFI------------LVVITALAGGHTDA- 131
Query: 144 RVQKPEWLVMLGICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPQY 203
SGRI KGPAPL L P Y
Sbjct: 132 ------------------------------------------SGRIWKGPAPLELGAPSY 149
Query: 204 EFDGENLIV 212
F E+ ++
Sbjct: 150 GFTSEDTVI 158
>At4g03280 [C] KOG1671 Ubiquinol cytochrome c reductase subunit RIP1
Length = 229
Score = 55.5 bits (132), Expect = 5e-08
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 156 ICTHLGCVPIGESGDFGGWFCPCHGSHYDISGRIRKGPAPLNLEIPQYEFD 206
+CTHLGCV + + CPCHGS Y+ GR+ +GPAPL+L + + D
Sbjct: 156 VCTHLGCVVPWNKAE-NKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADID 205
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,084,713
Number of Sequences: 60738
Number of extensions: 470497
Number of successful extensions: 981
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 13
length of query: 213
length of database: 30,389,216
effective HSP length: 102
effective length of query: 111
effective length of database: 24,193,940
effective search space: 2685527340
effective search space used: 2685527340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)