ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV5886 check: MH KL KOG0387 Replication, recombination and repair Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain)
r_klactV5886 check: MH KL KOG0387 Transcription Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV5886 2021349 2018251 -1033
(1033 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 1170 0.0
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 797 0.0
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 632 e-180
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 617 e-176
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 417 e-116
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 325 2e-88
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 296 9e-80
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 291 5e-78
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 290 6e-78
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 290 1e-77
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 288 3e-77
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 285 3e-76
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 285 3e-76
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 283 7e-76
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 283 1e-75
At2g25170 [R] KOG0383 Predicted helicase 282 2e-75
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 282 2e-75
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 282 2e-75
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 281 5e-75
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 275 2e-73
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 274 6e-73
YGL163c [L] KOG0390 DNA repair protein SNF2 family 273 8e-73
Hs20533808 [R] KOG0383 Predicted helicase 273 8e-73
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 270 9e-72
Hs4557451 [R] KOG0383 Predicted helicase 270 9e-72
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 270 1e-71
7295868 [L] KOG0390 DNA repair protein SNF2 family 269 2e-71
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 267 7e-71
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 267 7e-71
Hs4557453 [R] KOG0383 Predicted helicase 266 2e-70
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 266 2e-70
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 265 2e-70
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 264 6e-70
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 264 6e-70
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 263 1e-69
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 263 1e-69
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 262 2e-69
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 262 2e-69
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 261 3e-69
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 261 3e-69
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 261 4e-69
At5g44800 [R] KOG0383 Predicted helicase 261 4e-69
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 261 4e-69
CE03657 [R] KOG0383 Predicted helicase 260 7e-69
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 259 2e-68
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 258 3e-68
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 257 7e-68
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 255 2e-67
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 255 3e-67
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 252 2e-66
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 250 7e-66
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 250 9e-66
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 249 2e-65
CE25143 [L] KOG0390 DNA repair protein SNF2 family 248 5e-65
7293795 [R] KOG0383 Predicted helicase 246 1e-64
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 244 7e-64
CE17716 [R] KOG0383 Predicted helicase 243 1e-63
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 240 9e-63
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 239 2e-62
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 237 6e-62
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 236 2e-61
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 234 5e-61
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 229 1e-59
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 229 2e-59
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 228 4e-59
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 227 8e-59
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 226 1e-58
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 223 9e-58
YBR073w [L] KOG0390 DNA repair protein SNF2 family 220 8e-57
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 219 2e-56
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 218 3e-56
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 216 1e-55
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 216 1e-55
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 215 3e-55
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 212 2e-54
SPBP35G2.10 [R] KOG0383 Predicted helicase 211 5e-54
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 208 4e-53
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 207 9e-53
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 204 4e-52
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 203 1e-51
CE23323 [L] KOG0390 DNA repair protein SNF2 family 201 4e-51
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 200 8e-51
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 173 1e-42
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 169 3e-41
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 166 2e-40
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 161 4e-39
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 159 2e-38
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 153 2e-36
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 152 2e-36
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 148 4e-35
At4g31900 [R] KOG0383 Predicted helicase 145 3e-34
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 144 5e-34
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 144 5e-34
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 144 5e-34
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 140 1e-32
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 140 1e-32
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 140 1e-32
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 131 6e-30
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 130 8e-30
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 129 2e-29
7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 129 2e-29
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 126 2e-28
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 125 3e-28
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 125 4e-28
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 121 5e-27
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 121 6e-27
At2g21450 [L] KOG0390 DNA repair protein SNF2 family 120 1e-26
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 119 2e-26
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 117 7e-26
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 115 3e-25
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 115 4e-25
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 114 6e-25
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 110 1e-23
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 110 1e-23
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 107 7e-23
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 100 2e-20
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 100 2e-20
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 100 2e-20
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 99 3e-20
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 97 1e-19
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 97 2e-19
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 96 2e-19
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 94 1e-18
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 94 1e-18
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 91 9e-18
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 88 6e-17
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 88 8e-17
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 87 1e-16
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 87 1e-16
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 87 1e-16
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 86 4e-16
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 85 5e-16
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 85 5e-16
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 85 5e-16
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 84 1e-15
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 83 2e-15
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 83 2e-15
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 82 4e-15
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 81 7e-15
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 81 7e-15
Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 79 3e-14
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 78 6e-14
Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase 77 1e-13
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 77 1e-13
7293730 [R] KOG0383 Predicted helicase 76 3e-13
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 75 5e-13
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 73 3e-12
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 72 6e-12
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 69 3e-11
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 64 1e-09
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 62 5e-09
CE23294 [KL] KOG4439 RNA polymerase II transcription termination... 61 1e-08
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 60 2e-08
Hs22048060 [K] KOG0384 Chromodomain-helicase DNA-binding protein 60 2e-08
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 59 3e-08
YLR247c [L] KOG0298 DEAD box-containing helicase-like transcript... 58 9e-08
CE26384 [L] KOG0298 DEAD box-containing helicase-like transcript... 57 2e-07
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 1170 bits (3026), Expect = 0.0
Identities = 601/1077 (55%), Positives = 770/1077 (70%), Gaps = 52/1077 (4%)
Query: 2 SGDNLGGLKVQMMSQTSLEQEIENNANNMISXXXXXXXXXXXXRYTNKRDILRQKRDSLL 61
+ ++L L V ++SQ+SLE++I N+ N + R K++ L
Sbjct: 14 NNESLKDLGVNVLSQSSLEEKIANDVTNFSNLQSLQQEETRLERSKTALQRYVNKKNHLT 73
Query: 62 SKRYNASRISVRAKLKEQIEDVENYELKPLEQDIAEIKERIKGLKETNEADTTTKSTE-- 119
K N +RISV+ L++QI+++++ +++ + +DI +I+ RIK LKE + K ++
Sbjct: 74 RKLNNTTRISVKQNLRDQIKNLQSDDIERVLKDIDDIQSRIKELKEQVDQGAENKGSKEG 133
Query: 120 -RQPGESERDFLLRTGKITGFGNSVNFKVE---------DEEESKSILLAERQMLKNIXX 169
++PGE+E++FL+RTGKIT FG+ F ++ DE++ + +A QM++N+
Sbjct: 134 LQRPGETEKEFLIRTGKITAFGHKAGFSLDTANREYAKNDEQKDEDFEMATEQMVENLTD 193
Query: 170 XXXXXXXXXXFISDSEELLNESAGKLDVIRK----------PAEAIDDGDEHHYQQRLKK 219
+S E +E D I K P EA DDGDE +YQ+RLKK
Sbjct: 194 EDDNLSDQDYQMSGKESEDDEEEENDDKILKELEDLRFRGQPGEAKDDGDELYYQERLKK 253
Query: 220 WVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCEL 279
WV RS + D+PEW +PHP I DA ++ F +PG+I+ LLF YQKTCVQWL EL
Sbjct: 254 WVKQRSCGSQRSS--DLPEWRRPHPNIPDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYEL 311
Query: 280 YQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPP 339
YQQ CGGIIGDEMGLGKTIQ+IAF+A LHHS L GPVL+VCPATVMKQWCNEF WWPP
Sbjct: 312 YQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPVLIVCPATVMKQWCNEFQHWWPP 371
Query: 340 FRAVILHSIGAGM--NKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVK 397
R VILHS+G+GM ++ ++ E +LE ++M S F+Y D++ +T+ +LES +
Sbjct: 372 LRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKNSTRTKKALESSYHLD 431
Query: 398 KLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQ 457
KL++KV+TDGHI+ITTYVGLR+HS+ LL V+W YA+LDEGHKIRNPDS+ISLTCK+LKT
Sbjct: 432 KLIDKVVTDGHILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTH 491
Query: 458 NRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGY 517
NRIILSGTPIQNNLTELWSLFDF++PGKLGTLPVFQQQF PIN+GGYANA+NIQV+TGY
Sbjct: 492 NRIILSGTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGY 551
Query: 518 KCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRK 577
KCAVALRDLISPYLLRRVK+DVAKDLP+K EMVLFCKLT+YQ+SKYLEFLHS +L +I+
Sbjct: 552 KCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQN 611
Query: 578 GKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQG 637
GKR VL+GIDILRKICNHPDLLD K+ N DYG+P RSGKMQVVKQLLLLWH QG
Sbjct: 612 GKRNVLFGIDILRKICNHPDLLDRDTKRHNP----DYGDPKRSGKMQVVKQLLLLWHKQG 667
Query: 638 HKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYDVFL 697
+K LLFTQSRQMLDIL+EFIS KDP+LS L +LRMDGTTNI RQSLVD+FNNE +DVFL
Sbjct: 668 YKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESFDVFL 727
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
LTTRVGGLG+NLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREV+IYRLM+ GSIEEK
Sbjct: 728 LTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEK 787
Query: 758 IYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQ 817
IYHRQIFKQFL+N+IL DPKQKRFFK+++LHDLF+LGG+NGY TEE N+E+ K T N+K
Sbjct: 788 IYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSLGGENGYSTEELNEEVQKHTENLKN 847
Query: 818 NKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQSTEDDRIMGSLFSSANSVDT------ 871
+K+ E+DDF++L +SGV KLE F+N KE+ E TEDDR++ L ++++T
Sbjct: 848 SKSEESDDFEQLVNLSGVSKLESFYNGKEKKENSKTEDDRLIEGLLGGESNLETVMSHDS 907
Query: 872 -------NERDDIIGAEATRNVKSALDALKNSRKQ-TKRFDVGTPTWTGKFGRAGKIRKS 923
+ +II EA+R A++AL+ SRK+ TK++++GTPTWTG+FG+AGKIRK
Sbjct: 908 VVNSHAGSSSSNIITKEASRVAIEAVNALRKSRKKITKQYEIGTPTWTGRFGKAGKIRK- 966
Query: 924 RTALS---TNDSKFARKLNRDTLEREKIKREDIQSD----ATQKDEKSAEVLKASIEKYL 976
R L T + + + E K R++ D A K+ S +I YL
Sbjct: 967 RDPLKNKLTGSAAILGNITKSQKEASKEARQENYDDGITFARSKEINSNTKTLENIRAYL 1026
Query: 977 SQSPGFASKSADLVIRVGLQLTNSTDVERVRKILKDVAVFDKLKKVWVLKSANRDTD 1033
+ F S S ++ +G+ L++ DV +VR +LK +A FDK +K WVL R+ +
Sbjct: 1027 QKQNNFFSSSVSILNSIGVSLSDKEDVIKVRALLKTIAQFDKERKGWVLDEEFRNNN 1083
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 797 bits (2058), Expect = 0.0
Identities = 452/964 (46%), Positives = 596/964 (60%), Gaps = 93/964 (9%)
Query: 4 DNLGGLKVQMMSQTSLEQEIENNANNMISXXXXXXXXXXXXRYTNKRDILRQK---RDSL 60
++L L V + Q +LE+++ N A+ I+ + + +++K D
Sbjct: 5 EDLSHLGVFSVDQENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLDER 64
Query: 61 LSKRYNASRISVRAKLKEQIEDVENYELKPLEQDIAEIKERIKGLKETNEADTTTKSTER 120
+ R ++ISV+ ++Q+ + L+ L+ D +IK R+ N STE
Sbjct: 65 IDSRL--TKISVKENFRKQLSKFRD-TLQSLQSDENDIKRRLNNEDSANAPGIGAFSTE- 120
Query: 121 QPGESERDFLLRTGKITGFGNSVNFKVE---DEEES--KSILLAERQMLKNIXXXXXXXX 175
E ER L+RTGK+T F N + E D+E S ++++ +E +
Sbjct: 121 ---ELERQELIRTGKVTPFRNLSGLQKEVDFDDESSIREAVIKSEGTYYETAPHLSSEPS 177
Query: 176 XXXXFISDSEELLNESAGKLDVIRKPA--EAIDDGDEHHYQQRLKKWVANRSKDRDY--- 230
I +E + +D + + AIDDGD+ Y+QRL W ANR + RD
Sbjct: 178 NIDHGIIPRDE--KDEYVTVDAVTEKVVTAAIDDGDDLVYRQRLNAWCANRKELRDQASA 235
Query: 231 -DNQPDI------PEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQG 283
+N D EWL PHP F +PGDI P LF YQ TCVQWL ELY Q
Sbjct: 236 SENNKDRGEFEGKDEWLLPHPSKKGQTFEGGFTIPGDIRPHLFRYQVTCVQWLWELYCQE 295
Query: 284 CGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAV 343
GGIIGDEMGLGKTIQI++FL++LHHS K P L+VCPAT+MKQW NEFHTWW P R V
Sbjct: 296 AGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQWVNEFHTWWAPLRVV 355
Query: 344 ILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESR-------KSV 396
+LH+ G+G + + E + + E+++TS++ R +
Sbjct: 356 VLHATGSGQRASREKRQYESDA-------------SESEAEESKTSIKLRGASSSFHRYA 402
Query: 397 KKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKT 456
K L+E V T GHI+ITTY GLR++ + +L WGY +LDEGHKIRNPDS+IS++CKQ++T
Sbjct: 403 KNLVESVFTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEISISCKQIRT 462
Query: 457 QNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTG 516
NRIILSGTPIQNNLTELW+LFDFV+PG+LGTLPVFQ QFA PIN+GGYANASN+QV+T
Sbjct: 463 VNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTA 522
Query: 517 YKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIR 576
YKCA LRDLISPYLLRR+K DVA DLPKK+E VLFCKLT Q+ Y +FL ++ KI
Sbjct: 523 YKCACMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKIL 582
Query: 577 KGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQ 636
GKRQ+LYGIDILRKICNHPDL + R+ + ED +YG+P +SGK++V++ LL LW Q
Sbjct: 583 NGKRQMLYGIDILRKICNHPDL--VTREYLLHKEDYNYGDPEKSGKLKVIRALLTLWKKQ 640
Query: 637 GHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN-NEPYDV 695
GH+TLLF+Q+RQMLDIL+ I KD L D+ + RMDG+T+I RQ LVD FN NE +DV
Sbjct: 641 GHRTLLFSQTRQMLDILE--IGLKD--LPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDV 696
Query: 696 FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIE 755
FLLTTRVGGLG+NLTGA+R+I+FDPDWNPSTD QARERAWR+GQK++V +YRLM AG+IE
Sbjct: 697 FLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIE 756
Query: 756 EKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEE----FNQEIVKQ 811
EKIYHRQIFKQFL+NKILKDPKQ+RFFKM DLHDLFTLG + TE E V +
Sbjct: 757 EKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGDNKTEGTETGSMFLGSERVLR 816
Query: 812 TGNIKQNKTSETD------------------DFDKLSQISGVHKLEGFFNSKEQDEKQST 853
N +N D + K+ + G+ +E + +E + ++
Sbjct: 817 KDNSSRNGNEAEDIPARDRKKHKIHDKGKKVNSSKVFEKMGIASMEKYKPPQESNVTKTN 876
Query: 854 E-----DDRIMGSLFSSANSVDTNERDDIIGA----------EATRNVKSALDALKNSRK 898
DD ++ +F+SA T + DDI+ A EATR AL A+ + R+
Sbjct: 877 SDSTLGDDSVLDDIFASAGIQSTLKHDDIMEASQTESILVEKEATRVANEALRAVSSFRR 936
Query: 899 QTKR 902
++
Sbjct: 937 PPRQ 940
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 632 bits (1629), Expect = e-180
Identities = 372/855 (43%), Positives = 509/855 (59%), Gaps = 104/855 (12%)
Query: 247 SDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLAT 306
S + +P IF LF YQ+ VQWL EL+ Q GGIIGDEMGLGKTIQ+++FL +
Sbjct: 367 SSVQLEGGLNIPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGS 426
Query: 307 LHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKM 366
LH S K+ P +++CP T+++QW E W+P F ILH G
Sbjct: 427 LHFS-KMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHG----------- 474
Query: 367 LMTSNYGTFTYNDYEKKEKTRTSLESR-KSVKK---LLEKVI-TDGHIIITTYVGLRLHS 421
G + +DY+ + + E + K+ KK LL +V+ ++ ++ITTY LRL
Sbjct: 475 ---KGQGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQG 531
Query: 422 EALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFV 481
E LLN+ WGYA+LDEGH+IRNP+SDI+L CKQL+T +RII++G PIQN LTELWSLFDFV
Sbjct: 532 EKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFV 591
Query: 482 YPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAK 541
+PGKLG LPVF+ +F+ PI +GGYANAS +QV T Y+CAV LRDLI PYLLRR+K+DV
Sbjct: 592 FPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA 651
Query: 542 DLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDL 601
L KK E VLFC LT Q+S Y FL S E+ +I G R LYGID++RKICNHPDLL+
Sbjct: 652 HLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLE- 710
Query: 602 KRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKD 661
+ + +++ DYGNP RSGKM+VV ++L +W QGH+ LLF+Q++QMLDIL+ F+
Sbjct: 711 ---REHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFL---- 763
Query: 662 PELSDLKFLRMDGTTNIGSRQSLVDKFNN-EPYDVFLLTTRVGGLGINLTGANRIIIFDP 720
++ + RMDG T + R +L+D+FNN E VF+LTT+VGGLG NLTGANR+IIFDP
Sbjct: 764 -VANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDP 822
Query: 721 DWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKR 780
DWNPS DMQARERAWRIGQK++VT+YRL+ G+IEEK+YHRQI+K FL+NKILK+P+Q+R
Sbjct: 823 DWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR 882
Query: 781 FFKMNDLHDLFTL--GGDNGYETEEFN--QEIVKQTG--NIKQNKTSETDDFDKLSQISG 834
FFK D+ DLF L GD+ TE N ++ ++ ++ +K E+D +Q++
Sbjct: 883 FFKARDMKDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQSDKKPESD-----TQLAL 937
Query: 835 VHKLEGFFNSKEQDEKQST--------EDDRIMGSLFSSANSVDTNERDDIIGA------ 880
EG S EQ + + T E+ I+ SLF + D I+ A
Sbjct: 938 HKTAEG---SSEQTDVEMTDKTGEAMDEETNILKSLFDAHGIHSAVNHDAIMNANDEEEK 994
Query: 881 -----EATRNVKSALDALKNSRKQTKRFDVGTPTWTGKFGRAGKIRKSRTAL-STNDSKF 934
+A++ + A +AL+ SR R + PTWTG+ G AG R ST +S+
Sbjct: 995 MRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSVRRRFGSTVNSRL 1054
Query: 935 --------------------------ARKLNRDTLEREK---IKREDIQSDATQKDEKSA 965
A LNR RE+ + E QS S+
Sbjct: 1055 TQTGDKPSAIKNGISAGLSSGKAPSSAELLNRIRGSREQAIGVGLEQPQSSFPSSSGSSS 1114
Query: 966 -------EVLKASIEKYLSQSPGFASKSADLVIRVGLQLTNSTDVERVRKILKDVAVF-- 1016
EVL I ++ Q G A ++ ++ + + D + + +LK++A
Sbjct: 1115 RVGSLQPEVLIRKICSFVQQKGGSADTTS--IVNHFRDIVSFNDKQLFKNLLKEIATLEK 1172
Query: 1017 DKLKKVWVLKSANRD 1031
D+ + WVLKS +D
Sbjct: 1173 DQNRSFWVLKSEYKD 1187
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 617 bits (1590), Expect = e-176
Identities = 328/623 (52%), Positives = 415/623 (65%), Gaps = 70/623 (11%)
Query: 199 RKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVP 258
RK DDGDE +Y+QRL++W R +D++ + L+ + SDA E F VP
Sbjct: 447 RKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLK------LEDDSEESDAEFDEGFKVP 500
Query: 259 GDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN---- 314
G +F LF YQ+T V+WL EL+ Q GGI+GDEMGLGKTIQIIAFLA L +S+
Sbjct: 501 GFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSN 560
Query: 315 ------GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLM 368
GP ++VCP TVM QW EFHTWWPPFR ILH G+
Sbjct: 561 YRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGS------------------ 602
Query: 369 TSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVR 428
+T+ KKEK L+ V I+IT+Y +RL + +
Sbjct: 603 ------YTH----KKEK-------------LIRDVAHCHGILITSYSYIRLMQDDISRYD 639
Query: 429 WGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGT 488
W Y ILDEGHKIRNP++ ++L CKQ +T +RIILSG+P+QNNL ELWSLFDF++PGKLGT
Sbjct: 640 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGT 699
Query: 489 LPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDV--AKDLPKK 546
LPVF +QF+ PI MGGY+NAS +QVKT YKCA LRD I+PYLLRR+KSDV + LP K
Sbjct: 700 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDK 759
Query: 547 NEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLL-----DL 601
NE VLFC+LT Q Y F+ S E+ +I G+ Q+ G+ LRKICNHPDL +L
Sbjct: 760 NEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNL 819
Query: 602 KRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKD 661
K ++ E+ +G RSGKM VV+ LL +WH QG + LLF+QSRQMLDIL+ F+
Sbjct: 820 KGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL---- 875
Query: 662 PELSDLKFLRMDGTTNIGSRQSLVDKFNNE-PYDVFLLTTRVGGLGINLTGANRIIIFDP 720
+L+MDGTT I SRQ L+ ++N + VFLLTTRVGGLG+NLTGANR++I+DP
Sbjct: 876 -RAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDP 934
Query: 721 DWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKR 780
DWNPSTD QARERAWRIGQK++VT+YRL+ AG+IEEKIYHRQIFKQFL+N++LKDPKQ+R
Sbjct: 935 DWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRR 994
Query: 781 FFKMNDLHDLFTLGGDNGYETEE 803
FFK NDL++LFTL + ++ E
Sbjct: 995 FFKSNDLYELFTLTSPDASQSTE 1017
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 417 bits (1072), Expect = e-116
Identities = 240/611 (39%), Positives = 345/611 (56%), Gaps = 90/611 (14%)
Query: 253 EDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRK 312
E F VPG ++ LFPYQ+ V+W+ LY+ GG++ D+MGLGKTIQ+I FL L HSR
Sbjct: 139 EGFSVPGFLWSSLFPYQQDGVRWMLRLYRDEKGGVLADDMGLGKTIQVIVFLGALLHSRV 198
Query: 313 LNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNY 372
++ L++CPAT++ QW +E+ ++P R P E+ E + + S
Sbjct: 199 VS-KALILCPATIVSQWMDEWKRFYPFVRIFF------------GFPNEDCEGVYLMS-- 243
Query: 373 GTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYA 432
YEK + VK L W
Sbjct: 244 -------YEK---------FKAGVKNFL----------------------------WDVL 259
Query: 433 ILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVF 492
ILDEGH+I+N ++ I+L+ K+ +++ R +LSGTPIQNNL ELWS+FDFV PG LG+ F
Sbjct: 260 ILDEGHRIKNKNAQITLSVKKARSRGRFVLSGTPIQNNLGELWSIFDFVNPGLLGSHTSF 319
Query: 493 QQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLF 552
++F I GGY NASN+QV+ Y+ ++ LR LI PY+LRR KS V+ LP K + ++F
Sbjct: 320 NEEFEEVIRRGGYRNASNLQVEKAYRHSLMLRSLIEPYILRRTKSQVSHKLPSKEDKIVF 379
Query: 553 CKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLL------------- 599
C LT Q Y L S +MK+ GK +L GI +LRK+CNHP LL
Sbjct: 380 CSLTPAQIELYNRVLESKHIMKVLTGKANLLSGISMLRKVCNHPRLLFPRKLGVSEDCEE 439
Query: 600 DLKRKKMNDYE-------DADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDI 652
+ +K + E D Y + S K++++ LL W S+G+K L+F+Q+ +MLDI
Sbjct: 440 EASDEKNGEDEALELPGADVSYDLVSSSCKIKILVDLLKKWRSEGNKVLVFSQTIRMLDI 499
Query: 653 LQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN-NEPYDVFLLTTRVGGLGINLTG 711
++ + +LRMDG T SR LVD+FN +E +FLLTT+VGGLG+NLTG
Sbjct: 500 IERCV-------RKYTYLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTG 552
Query: 712 ANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNK 771
A+RI+I+DPDWNPSTD QA+ERAWR GQK+ V IYR + +IEEK+Y +QIFK L K
Sbjct: 553 ASRIVIYDPDWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFKDLLGKK 612
Query: 772 ILKDPKQKRFFKMNDLHDL--FTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKL 829
+L +P+ RFF + +++L FT+ GD E + + G +K+ + + + F ++
Sbjct: 613 VLSNPRLSRFFNKSCINELFSFTMTGDL-VEVKTHEVHRCDEEGALKEVRDGDGEAFSRI 671
Query: 830 SQISGVHKLEG 840
++ L G
Sbjct: 672 KALNEKRVLSG 682
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 325 bits (834), Expect = 2e-88
Identities = 240/901 (26%), Positives = 421/901 (46%), Gaps = 95/901 (10%)
Query: 148 EDEEESKSILLAERQMLKNIXXXXXXXXXXXXFISDSEELLNESAGKLDVIRKPAEAIDD 207
E+ ++ + + E+ K FI + +SAG LD D
Sbjct: 96 EESDDDEEYEVLEKSRKKGRKSGSSSRSSSDDFIESDDNEDYKSAGLLD----------D 145
Query: 208 GDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFP 267
D +++ R+ K + + E+ K S+ + V ++ L
Sbjct: 146 NDSKNFKARIDKLKPEATSELVDTRMVTSEEYGKS---------SKPWKVNAGVWNKLHK 196
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN------GPVLVVC 321
+Q+ V+WL + GGI+ DEMGLGKTIQ + FL ++ + + + L+VC
Sbjct: 197 FQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHYKTTGLDTALIVC 256
Query: 322 PATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYE 381
+++ QW E + W+P R +LHS T + + +
Sbjct: 257 HVSIIAQWIKELNQWFPKARVFLLHS------------------HCSTGRQEDYVGSIFR 298
Query: 382 KKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIR 441
K ++ R K DG II+TTY + ++ W ILDEGH IR
Sbjct: 299 KLQRRR--------------KEYPDGAIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIR 344
Query: 442 NPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPIN 501
N ++ S+ ++L T R IL+GTP QN L+E W L DFV+PG+L F + F + IN
Sbjct: 345 NENTKCSIAMRKLMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIIN 404
Query: 502 MGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAK--DLPKKNEMVLFCKLTQYQ 559
G N S Y+C VAL + P +LRR++ D + LP+K E+VL C+L++ Q
Sbjct: 405 AGANLNCSPEAAAKAYECLVALHIAVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQ 464
Query: 560 KSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPAR 619
+ Y+E+ +S ++ +I + + + GI+ L ICNHP + + +G+
Sbjct: 465 RRLYMEYGNSHQVNEIIERRLKAFVGINHLTNICNHPGIY-----RSLSPASPKFGSIKD 519
Query: 620 SGKMQVVKQLLLLW-HSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNI 678
SGK+++ +L W S ++ +LFTQ R ++ +++ F++ K +K + + G +
Sbjct: 520 SGKVEMTFKLFDDWFKSPTNRVILFTQRRTVITMMEYFLAEK-----GIKCVSLTGADSA 574
Query: 679 GSRQSLVDKFNNE-PYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRI 737
+R ++ KF ++ VFL+TTR GGLG+NLT AN++IIFDPDWNP D QA+ R +R+
Sbjct: 575 AARPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRM 634
Query: 738 GQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTL--GG 795
GQ +V IYRL+ G+IE+ + +Q+ K+ L+ ++L + + +F N L DLF L G
Sbjct: 635 GQTNDVAIYRLVSNGTIEDLKFFKQVQKENLAARLLHNAEIDQFVPNNTLADLFRLKPKG 694
Query: 796 DNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEK---QS 852
G E + + + G+ KQ + K ++ +KL GF +D+K
Sbjct: 695 LEGSEIGVYLDGEIAREGSKKQKRDKVE---KKAAKKRMKNKLAGF-----EDKKLLLSL 746
Query: 853 TEDDRIMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQTKRFDVGTPTWTG 912
+DD+++ S + +++ + I + +++ A+ +L ++ + TW
Sbjct: 747 FDDDKLVAMREHSISLQNSSSMNRIEKMKMRKSIDDAVGSLLHTEGRLAH------TWKQ 800
Query: 913 KFGRAGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSDATQKDEKSAEVLKASI 972
F + ++RK+ S N F + D+ +++ Q++ L +
Sbjct: 801 VFHK--QLRKT-LKKSINGDYFVEEEQLDSY--WNTVHSGFRANDDQRELDRLVKLATDM 855
Query: 973 EKYLSQSPGFASKSADLVIRVGLQLTNSTDVERVRKILKDVAVFDKLKKVWVLKSANRDT 1032
++ + PG S + + T + +++I+ +A +D W+L+ R
Sbjct: 856 LQFFNGVPGAKEDSIHRIFVKDSDRKDPTQMFFIQEIISTLAKYDDASDTWILRDKYRSA 915
Query: 1033 D 1033
D
Sbjct: 916 D 916
Score = 189 bits (479), Expect = 3e-47
Identities = 148/537 (27%), Positives = 260/537 (47%), Gaps = 57/537 (10%)
Query: 359 PEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLE-----KVITDGHIIITT 413
PE +L + ++ + F Y K T+ V+K+ + K I G +++TT
Sbjct: 1104 PEAKLSEWMLAIRH-QFDYARIFVLHKASTTGHETDYVEKIFQDLKETKKIPFGAVLLTT 1162
Query: 414 YVGLRLHSEALLNVRWGYAILDEG-----HKIRNPDSDISLTCKQLKTQNRIILSGTPIQ 468
+ H +A+++ +W LD+G ++RN + K+LKT NR I + T ++
Sbjct: 1163 FAEFGKHEKAIVDHQWQLVYLDQGLFEMTRQMRNQIEGM----KKLKTPNRFIFTDTSVR 1218
Query: 469 NNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLIS 528
+ L ELW DFV+PG+L FQ F N I +G +A+ + T Y+C VAL +
Sbjct: 1219 DRLEELWWNVDFVFPGRLSDYKTFQTNFQNVIEIGCRLDATPEEASTAYECIVALHVALK 1278
Query: 529 PYLLRRVKSD-----VAKDLPKKN--------------EMVLF-----CKLTQYQKSKYL 564
P +L R+ + +++ KK E LF C L++ Q+
Sbjct: 1279 PLILSRLIKNPNDWFCRREISKKEVEHIKVRIFVKQYFEQTLFFQDIICPLSKRQRRCLK 1338
Query: 565 EFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQ 624
+ SDE+ I + G+ L IC+HP + K E +G+ SGK++
Sbjct: 1339 IYKRSDEVQGILRQSSAACVGLKKLTDICDHPGI-----HKGVTPETKKFGSIEDSGKVR 1393
Query: 625 VVKQLLLLW-HSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQS 683
+V QLL +W + G K ++FTQ RQ+ +L+ F+ K ++ FL+ N R++
Sbjct: 1394 IVFQLLDMWLGTPGAKVVIFTQRRQVAVMLEHFM--KQKRIAYCSFLK---AKNAYDREN 1448
Query: 684 LVDKF-NNEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQ-ARERAWRIGQKR 741
+V+ F N + L + + LG+ L AN++IIFDP+WNP +D++ RE ++ +
Sbjct: 1449 VVNYFENTTDVQILLAPSIMFKLGMQLKKANKVIIFDPEWNPDSDVKHTREMSFLTKKVE 1508
Query: 742 EVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYET 801
+VT+ RL+ G++E+ Y +++++ L++++L DPK + F L + T+ +
Sbjct: 1509 DVTVVRLVSEGTVEDSSYFKKLWESGLASRLLSDPKFEPFVPRTTLEEFLTVRPK--IKA 1566
Query: 802 EEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQSTEDDRI 858
+ + +VK + +N+ E +D LS I +L+ + ST DRI
Sbjct: 1567 GKNDMPVVK---SHMKNRLLEYEDKQLLSSIIDTTRLDTIRTHFTSFQYHSTTSDRI 1620
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 296 bits (759), Expect = 9e-80
Identities = 247/911 (27%), Positives = 421/911 (46%), Gaps = 135/911 (14%)
Query: 141 NSVNFKVEDEEESKSILLAERQMLKNIXXXXXXXXXXXXFISDSEELLNESAGKL---DV 197
N + ++++EE +L E++ + + ++ N +AG L
Sbjct: 241 NRIQKLIQEDEEGYRAMLDEKKDQRLVYLLEQTDDYIKSLCDLLKQQQNATAGSLATKSY 300
Query: 198 IRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQP--DIPEWLKPHPKISDANISEDF 255
IRK + + + D+ + L K R+ D +Y+N+ +I ++ + + + F
Sbjct: 301 IRKEYDGVAEEDK--VKSILDK---ARNDDDEYENKTKMNIEDYYTTAHGVREEIKEQHF 355
Query: 256 MVPGDIFPL-LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN 314
M+ G L L PYQ ++W+ L+ GI+ DEMGLGKTIQ IAF+ L +K +
Sbjct: 356 MMGGGNPSLKLKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTS 415
Query: 315 GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
GP LV+ P + + W NEF W A +H I
Sbjct: 416 GPFLVIVPLSTVPNWQNEFDKW-----AANVHLIA------------------------- 445
Query: 375 FTYNDYEKKEKTRTSLESRKSVKKLLEKVITDG--HIIITTYVGLRLHSEALLNVRWGYA 432
Y+ ++TR K+ E +I G ++++TT+ + L +RW Y
Sbjct: 446 -----YKGPKETR----------KVFEPIIKSGKFNVLLTTFEYVIREKALLGKLRWKYM 490
Query: 433 ILDEGHKIRNPDSDIS-LTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPV 491
I+DEGH+++N ++ + + + Q R++++GTP+QN L ELW+L +F+ P +
Sbjct: 491 IIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSCST 550
Query: 492 FQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVL 551
F+Q F P G + + L ++ P+LLRR+K +V +LP K E V+
Sbjct: 551 FEQWFNAPFATTG--EKVELTQEETMLIIRRLHKVLRPFLLRRLKKEVESELPDKMEFVV 608
Query: 552 FCKLTQYQKSKYLEFLHSDELM--KIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDY 609
C ++ QK Y + + L+ K G + + + LRK+CNHP L + + ++
Sbjct: 609 RCDMSALQKVLY-KHMQKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFLFENVEESCRNF 667
Query: 610 EDADYGNPAR----SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELS 665
DA + + SGK++++ ++L + GH+ L+F Q M+ I+++F++
Sbjct: 668 WDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAG-----G 722
Query: 666 DLKFLRMDGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWN 723
+++LR+DG+T R +L+DKFN N Y +F+L+TR GGLG+NL A+ +IIFD DWN
Sbjct: 723 TIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWN 782
Query: 724 PSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPK------ 777
P DMQA++RA RIGQK EV ++RL+ A S+EEKI +K + K+++ K
Sbjct: 783 PHQDMQAQDRAHRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNRST 842
Query: 778 --QKRFFKMN------------------DLHD----------LFTLGGDNGYETEEFNQE 807
++R N D++D LF +E E+ +
Sbjct: 843 GAERREILENIIKTENESEEDEEVPNDEDINDILSRSEEEFELFQKMDQERFENEQAQKA 902
Query: 808 IVKQTGNIK-----QNKTSETDDFDKLSQISGVHKLEGFFNS----KEQDEKQST-EDDR 857
+ G + ETD +K + V LE S +E D T DD+
Sbjct: 903 KPRLVGEDEIPRDILRAADETDYIEKAKEEGRVPYLEVMPGSRRTRREVDYSADTMSDDK 962
Query: 858 IMGSLFSSANSVDTNERDDIIGAE-ATRNVKSALDALKNSRKQTKRFDVGTPTWTGKFGR 916
+ LF ++ ++ A+ +V +L++ +++K K DV P T K R
Sbjct: 963 FLEKLFDEDDTTSARTEEEPNPAQPGPSSVSISLESSCDTQKDIKVDDVPAPPLTFKVPR 1022
Query: 917 -----AGKIRKSRTALSTNDS--------KFARKLNRDTLEREKIKREDIQSDATQKDEK 963
G +K + S +DS K RK + + ++ K+E Q +T ++
Sbjct: 1023 LTIKLGGDEKKRKHNRSESDSDDNSLKKEKKHRKEDHPKEKEKEKKKEKEQEKSTDSEKD 1082
Query: 964 SAEVLKASIEK 974
++A IEK
Sbjct: 1083 LKRKIEAPIEK 1093
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 291 bits (744), Expect = 5e-78
Identities = 251/946 (26%), Positives = 416/946 (43%), Gaps = 125/946 (13%)
Query: 48 NKRDILRQKRDSLLSKRYNASRISVR-AKLKEQIEDVENYELKPLEQDIAEIKERIKGLK 106
++ +L + LSK N I+V+ A L Q+ +N+EL LE+ E R+K +
Sbjct: 555 HQNSLLTNTHPNFLSKIRN---INVQDALLTNQL--YKNHELLKLERKKTEAVARLKSMN 609
Query: 107 ETNEADTTTKSTERQPGESERDFLLRTGKITGFGNSVNFKVEDEEESKSILLAERQMLKN 166
++ + RQ +++R L+ G N + ++++ ++ Q LK
Sbjct: 610 KS----AINQYNRRQDKKNKR---LKFGHRL-IATHTNLERDEQKRAEKKAKERLQALKA 661
Query: 167 IXXXXXXXXXXXXFISDSEELLNESAGKLDVIRKPA--------EAIDDGDEHHYQQRLK 218
+ LL ++ LD + + E ID + ++
Sbjct: 662 NDEEAYIKLLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVDD 721
Query: 219 KWVANRSKDRDYDNQPD------------IPEWLKPHPKISDANISEDFMVPGDIFPLLF 266
+ + KD +YD+ D I E +K P I +D+ + G
Sbjct: 722 LSMVPKMKDEEYDDDDDNSNVDYYNVAHRIKEDIKKQPSILVGGTLKDYQIKG------- 774
Query: 267 PYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVM 326
+QW+ L+ GI+ DEMGLGKTIQ I+ L L+ + + GP LV+ P + +
Sbjct: 775 ------LQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTL 828
Query: 327 KQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKT 386
W +EF W P R + KG+ P E K + K
Sbjct: 829 SNWSSEFAKWAPTLRTISF--------KGS--PNERKAK-----------------QAKI 861
Query: 387 RTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSD 446
R + +++TT+ + L V+W + I+DEGH+++N S
Sbjct: 862 RAG----------------EFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSK 905
Query: 447 ISLTCK-QLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGY 505
+SLT R+IL+GTP+QNNL ELW+L +FV P ++ F + F P G
Sbjct: 906 LSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGG 965
Query: 506 ANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLE 565
+ + + L ++ P+LLRR+K DV K+LP K E V+ CK++ Q+ Y +
Sbjct: 966 QDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQ 1025
Query: 566 FLH------SDELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPAR 619
L D+ K G R I L+KICNHP + + ++N + +
Sbjct: 1026 MLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDDIWRV 1085
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
+GK +++ ++L + GH+ L+F Q Q++DI+++F+ Y ++K+LR+DG T
Sbjct: 1086 AGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRY-----INIKYLRLDGHTKSD 1140
Query: 680 SRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRI 737
R L+ FN + Y F+L+TR GGLG+NL A+ +IIFD DWNP D+QA++RA RI
Sbjct: 1141 ERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRI 1200
Query: 738 GQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDN 797
GQK EV I RL+ S+EE I R K + K+++ K + L D
Sbjct: 1201 GQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDA 1260
Query: 798 GYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQSTEDDR 857
E + + V++ +K ++ +E ++ + ++D + E+
Sbjct: 1261 EEERRKKRESGVEEEEELKDSEINEI--------LARNDEEMAVLTRMDEDRSKKEEELG 1312
Query: 858 IMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQTKRFDVGTPTWTGKFGRA 917
+ L + D RD IGAE R +S A+ N R +R T T+
Sbjct: 1313 VKSRLLEKSELPDIYSRD--IGAELKRE-ESESAAVYNGRGARER---KTATYNDNMSEE 1366
Query: 918 GKIRKSRTALSTNDSKFARKLNRDTLERE-------KIKREDIQSD 956
+R+ + + K ARK ++ +IK E+I +D
Sbjct: 1367 QWLRQFEVSDDEKNDKQARKQRTKKEDKSEAIDGNGEIKGENIDAD 1412
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 290 bits (743), Expect = 6e-78
Identities = 205/650 (31%), Positives = 315/650 (47%), Gaps = 112/650 (17%)
Query: 221 VANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELY 280
VA+R ++RD+ Q P KP F +P I L YQ+ V WL L
Sbjct: 1240 VASRERERDFIQQMMDPSKAKP------------FKLPIAIKATLRKYQQDGVNWLAFLN 1287
Query: 281 QQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNG-----------PVLVVCPATVMKQW 329
+ GI+ D+MGLGKT+Q I +A+ + RK + P L++CP ++ W
Sbjct: 1288 KYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHW 1347
Query: 330 CNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTS 389
NEF + PF V++++ G
Sbjct: 1348 ENEFDQY-APFLKVVVYAGGP--------------------------------------- 1367
Query: 390 LESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISL 449
+V+ L ++D II+T+Y R L + Y +LDEGH I+N S ++
Sbjct: 1368 -----TVRLTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAK 1422
Query: 450 TCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANAS 509
K++ +R+IL+GTPIQNN+ ELWSLFDF+ PG LGT +FQ++FA PI + S
Sbjct: 1423 AVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTS 1482
Query: 510 NIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHS 569
+ + + G AL + P++LRR+K DV DLP K +C+L QK Y++F
Sbjct: 1483 SKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKK 1542
Query: 570 D--------ELMKIRKGKRQVLYGIDILRKICNHPDLL----DLKRKKMNDY---EDADY 614
E +I GK+ + + +RK+CNHP L+ + ++ DY D
Sbjct: 1543 QKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLDL 1602
Query: 615 GNPARSGKMQVVKQLLL----------LWHSQG-----------HKTLLFTQSRQMLDIL 653
+ + K+ ++ LL SQ H+ L+F Q + MLD++
Sbjct: 1603 HDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALIFCQLKDMLDMV 1662
Query: 654 QEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGA 712
+ + K + + ++R+DG+ + RQ +V KFN +P D LLTT+VGGLG+NLTGA
Sbjct: 1663 ENDLFKK--YMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGA 1720
Query: 713 NRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKI 772
+ +I + DWNP D+QA +RA RIGQK+ V +YR++ G++EEKI Q FK +++ +
Sbjct: 1721 DTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1780
Query: 773 LKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSE 822
+ +Q D H L L D T + N+E K G+ + K E
Sbjct: 1781 VN--QQNSGLASMDTHQLLDL-FDPDNVTSQDNEE--KNNGDSQAAKGME 1825
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 290 bits (741), Expect = 1e-77
Identities = 198/573 (34%), Positives = 293/573 (50%), Gaps = 74/573 (12%)
Query: 258 PGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGP- 316
P I + F Y+ CV + GC I+ DEMGLGKT+Q IA L TL G
Sbjct: 266 PHQIEGVKFLYK--CVTGRIDRCANGC--IMADEMGLGKTLQCIALLWTLLKQSPQAGKP 321
Query: 317 ----VLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNY 372
++ CP++++K W NE W + K P
Sbjct: 322 TIEKAIITCPSSLVKNWANELVKW---------------LGKDAITP------------- 353
Query: 373 GTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYA 432
F + K++ +L+ SV + +T ++I +Y LR + E L N G
Sbjct: 354 --FILDGKSSKQELIMALQQWASVHG---RQVTRP-VLIASYETLRSYVEHLNNAEIGML 407
Query: 433 ILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVF 492
+ DEGH+++N DS +L Q R+ILSGTPIQN+L+E +SL +F PG LG+ F
Sbjct: 408 LCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEF 467
Query: 493 QQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLF 552
++ + PI G A+ + + G L +++ +++RR ++K LP K E V+F
Sbjct: 468 RKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVF 527
Query: 553 CKLTQYQKSKYLEFLHSDELMKIRKGK-RQVLYGIDILRKICNHPDLLDLKRKKMNDYED 611
C L+++Q S Y F+ S E+ KI +G Q L I +L+KICNHPDLL+L D E
Sbjct: 528 CNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLNL----TEDLEG 583
Query: 612 ADYGNP-----------------ARSGKMQVVKQLLL-LWHSQGHKTLLFTQSRQMLDIL 653
+ P + SGKM V++++L + K +L + LD+
Sbjct: 584 CEALFPPGFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLF 643
Query: 654 QEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTG 711
++ + K LR+DGT N+ RQ LVD FN+ D VFLL+++ GG GINL G
Sbjct: 644 EQLCRAR-----GYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIG 698
Query: 712 ANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNK 771
ANR+I+FDPDWNP+ D QA R WR GQK++ +YR + G+IEEKI+ RQ KQ LS+
Sbjct: 699 ANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSC 758
Query: 772 ILKDPKQ-KRFFKMNDLHDLFTLGGDNGYETEE 803
++ + + +R F +++L LF L ET E
Sbjct: 759 VVDEAQDVERHFSLDNLRQLFQLNDHTVCETHE 791
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 288 bits (737), Expect = 3e-77
Identities = 208/726 (28%), Positives = 328/726 (44%), Gaps = 100/726 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ ++W+ LY GI+ DEMGLGKTIQ I+ + L+ +K GP LV+ P + +
Sbjct: 473 YQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTIT 532
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P +I KGT L+ + N+
Sbjct: 533 NWTLEFEKWAPSLNTIIY--------KGTPNQRHSLQHQIRVGNFD-------------- 570
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+++TTY + L W + I+DEGH+++N S +
Sbjct: 571 ---------------------VLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKL 609
Query: 448 SLTCKQL-KTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
S T +T+NR+IL+GTP+QNNL ELW+L +FV P + F+ F P G
Sbjct: 610 SFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQ 669
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+ + L ++ P+LLRR+K +V KDLP K E V+ CKL+ Q+ Y +
Sbjct: 670 EKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQM 729
Query: 567 LHSDELM-------KIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPAR 619
L + L + G + + I LRKICNHP + D E NP+R
Sbjct: 730 LKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFD---------EVEGVVNPSR 780
Query: 620 ---------SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFL 670
+GK +++ ++L + + GH+ L+F Q Q++DI+++F+ KD LK++
Sbjct: 781 GNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKD-----LKYM 835
Query: 671 RMDGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDM 728
R+DG+T R +++ FN + Y FLL+TR GGLG+NL A+ +IIFD DWNP D+
Sbjct: 836 RLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDL 895
Query: 729 QARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLH 788
QA++RA RIGQK EV I RL+ S+EE I R + K + K+++ K
Sbjct: 896 QAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFD--------- 946
Query: 789 DLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQD 848
E E F + +++ N + +E DD D+L+ E K
Sbjct: 947 -----NKSTAEEQEAFLRRLIESETNRDDDDKAELDD-DELNDTLARSADEKILFDKIDK 1000
Query: 849 EKQSTE--DDRIMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQTKRFDVG 906
E+ + E D + G + +E + + + K +Q KR
Sbjct: 1001 ERMNQERADAKAQGLRVPPPRLIQLDELPKVFREDIEEHFKKEDSEPLGRIRQKKRVYYD 1060
Query: 907 TPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSDATQKDEKSAE 966
+F A + +L A K R+ ER ++++ + + + E + E
Sbjct: 1061 DGLTEEQFLEA--VEDDNMSLED-----AIKKRREARERRRLRQNGTKENEIETLENTPE 1113
Query: 967 VLKASI 972
+ S+
Sbjct: 1114 ASETSL 1119
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 285 bits (729), Expect = 3e-76
Identities = 212/660 (32%), Positives = 304/660 (45%), Gaps = 118/660 (17%)
Query: 245 KISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFL 304
++ D E++ +P I L YQ+ V WL L + GI+ D+MGLGKT+Q I L
Sbjct: 1246 QLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICIL 1305
Query: 305 ATLHHSRK-----------LNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMN 353
A H R + P LVVCP T+ W +E + LH G
Sbjct: 1306 AGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGP--- 1362
Query: 354 KGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITT 413
P E + L+ + ++I+ +
Sbjct: 1363 -----PTERIR-----------------------------------LQHQVKRHNLIVAS 1382
Query: 414 YVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTE 473
Y +R + N+++ Y ILDEGH I+N + +S KQL RIILSGTPIQNN+ E
Sbjct: 1383 YDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLE 1442
Query: 474 LWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLR 533
LWSLFDF+ PG LGT F ++ PI A +S+ + + G AL + P+LLR
Sbjct: 1443 LWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLR 1502
Query: 534 RVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHS------DELMKIR----------- 576
R+K DV +DLP K +C L+ Q Y +F S DE +
Sbjct: 1503 RMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKL 1562
Query: 577 KGKRQVLYGIDILRKICNHPDL---------------LDLKRKKMNDYEDA--------- 612
K V + LRK+CNHP L L ++ ++D + A
Sbjct: 1563 KATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQL 1622
Query: 613 ------DYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSD 666
G+ + SG VV Q H+ L+F Q + MLDI++ P L
Sbjct: 1623 LLDCGLGNGSTSESGTESVVAQ---------HRILIFCQLKSMLDIVEH--DLLKPHLPS 1671
Query: 667 LKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPS 725
+ +LR+DG+ G R S+V +FNN+P DV LLTT VGGLG+NLTGA+ ++ + DWNP
Sbjct: 1672 VTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPM 1731
Query: 726 TDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL-KDPKQKRFFKM 784
D+QA +RA RIGQKR V +YRL+ G++EEKI Q FK ++N ++ ++ +
Sbjct: 1732 RDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGT 1791
Query: 785 NDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNS 844
+ L DLFTL D E + + +I +N + D Q + LE F +S
Sbjct: 1792 DQLLDLFTLDKDGKAEKADTSTSGKASMKSILENLSDLWDQ----EQYDSEYSLENFMHS 1847
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 285 bits (728), Expect = 3e-76
Identities = 196/582 (33%), Positives = 294/582 (49%), Gaps = 77/582 (13%)
Query: 254 DFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKL 313
++ VP I L YQ+ + WL L + GI+ D+MGLGKT+Q I LA H R+
Sbjct: 1277 NYKVPVPISVELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQT 1336
Query: 314 ----NGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMT 369
N P LV+CP T+ W E + +++G+ +L
Sbjct: 1337 ANLANLPSLVICPPTLTGHWVYEVEKF---------------LDQGS---------VLRP 1372
Query: 370 SNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRW 429
+Y F +EK R+ + T ++++ +Y +R + + +
Sbjct: 1373 LHYYGFPVG----REKLRSDIG-------------TKCNLVVASYDTVRKDIDFFSGIHF 1415
Query: 430 GYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTL 489
Y +LDEGH I+N + S K+LK +R+ILSGTPIQNN+ ELWSLFDF+ PG LGT
Sbjct: 1416 NYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE 1475
Query: 490 PVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEM 549
F Q+F+ PI A +S + + G AL + P+LLRRVK DV KDLP K
Sbjct: 1476 KQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQ 1535
Query: 550 VLFCKLTQYQKSKYLEFLH---SDELMKI------------RKGKRQVLYGIDILRKICN 594
L C+L+ Q Y +F + D L K+ K + + L+ +CN
Sbjct: 1536 DLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCN 1595
Query: 595 HPDLLDLKRKKMND------YEDADYGNPARSGKMQVVKQLLL-------LWHSQGHKTL 641
HP L+ + +++ ++ + S K+ +KQLLL H+ L
Sbjct: 1596 HPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRAL 1655
Query: 642 LFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTT 700
+F Q + MLDI+++ + + L + +LR+DG+ RQ +V+ FN++P DV LLTT
Sbjct: 1656 IFCQLKAMLDIVEQDLLRR--HLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTT 1713
Query: 701 RVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYH 760
VGGLG+NLTGA+ +I + DWNP D+QA +RA RIGQK+ V +YRL+ S+EEKI
Sbjct: 1714 MVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMG 1773
Query: 761 RQIFKQFLSNKILK-DPKQKRFFKMNDLHDLFTLGGDNGYET 801
Q FK +N ++ + + + + DLF G D G E+
Sbjct: 1774 LQKFKILTANTVVSAENASLQTMGTSQIFDLFNGGKDKGAES 1815
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 283 bits (725), Expect = 7e-76
Identities = 233/867 (26%), Positives = 392/867 (44%), Gaps = 106/867 (12%)
Query: 181 ISDSEELLNESAGKLDVIRKPAEAIDDG----DEHHYQQRLKKWVANRSKDRDYDNQPDI 236
+SD EE E A +P E DD DE + + + N + D + +
Sbjct: 449 LSDDEEEEEEEAPV-----EPEEEKDDQYAGMDEETKAKMILEKARNEEDEYDQKTKKQM 503
Query: 237 PEWLKPHPKISDANISEDF-MVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLG 295
++ KI + + + M GD LL PYQ ++W+ LY GI+ DEMGLG
Sbjct: 504 ADYYATAHKIKEKVVKQHTTMGGGDPNLLLKPYQIKGLEWMVSLYNNNLNGILADEMGLG 563
Query: 296 KTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKG 355
KTIQ I+ + L ++ NGP LV+ P + + W NEF W P +I KG
Sbjct: 564 KTIQTISLVTYLMEVKQNNGPYLVIVPLSTLSNWQNEFAKWAPSVTTIIY--------KG 615
Query: 356 TQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYV 415
T+ +E + + ++++TTY
Sbjct: 616 TKDARRRVEGQIRKGAF-----------------------------------NVLMTTYE 640
Query: 416 GLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQL-KTQNRIILSGTPIQNNLTEL 474
+ L +RW Y I+DEGH+++N + ++L Q+R++L+GTP+QN L EL
Sbjct: 641 YVIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPEL 700
Query: 475 WSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRR 534
W+L +F+ P + F+Q F P G N Q +T L ++ P+LLRR
Sbjct: 701 WALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELN-QEET-MLIIRRLHKVLRPFLLRR 758
Query: 535 VKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDEL-MKIRKGKRQVLYGIDILRKIC 593
+K +V LP K E V+ C + QK Y L K+ G R ++ + LRK+C
Sbjct: 759 LKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARSLMNTVVHLRKLC 818
Query: 594 NHPDLL----DLKRK--KMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSR 647
NHP L D R K+N+ D A GK++++ ++L + GH+ L+F Q
Sbjct: 819 NHPFLFPNIEDSCRAYWKVNEVNGTDLMRVA--GKLELLDRILPKLKATGHRILMFFQMT 876
Query: 648 QMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYDVFL--LTTRVGGL 705
M++I ++F++++ +LR+DG+T R L+ +FN D+FL L+TR GGL
Sbjct: 877 SMMNIFEDFLNFRR-----YTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAGGL 931
Query: 706 GINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFK 765
G+NL A+ +IIFD DWNP DMQA++RA RIGQK+EV + RL+ A S+EEKI +K
Sbjct: 932 GLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAARYK 991
Query: 766 QFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDD 825
+ K+++ K + G E ++ ++I++ G ++ + E D
Sbjct: 992 LNVDEKVIQAGKFDQ--------------RSTGAERKQMLEQIIQADG--EEEEEEEVPD 1035
Query: 826 FDKLSQISGVHKLE-GFFNSKEQDEKQSTEDDRIMGSLFSSANSVDTNE-RDDIIG---- 879
+ ++Q+ + E F S + D ++ + L ++ +E DDI+
Sbjct: 1036 DETVNQMVARSEEEFNIFQSMDIDRRREEAN-----QLHRKPRLLEEHEIPDDILKLSFD 1090
Query: 880 ----AEATRNVKSALDALKNSRKQTKRFDVGTPTWTG-KFGRAGKIRKSRTALSTNDSKF 934
A + +D N R++ + D + + +F + + + + + K
Sbjct: 1091 YEEMERAREEGREVVDQTPNQRRRRREVDYSSDLLSDEQFMKQVEEVEDENNQAVAERKK 1150
Query: 935 ARKLNRDTLEREKIKREDIQSDATQKDEKSAEVLKASIEKYLSQSPGFASKSADLVIRVG 994
RK L+ +D+ K +K+ L I + L + ++ +L+ V
Sbjct: 1151 QRKRKMAGLDENDDSMDDVV--LQHKKKKTDPELAEKINEMLDVILEYKNEDGELIADVF 1208
Query: 995 LQLTNSTDVERVRKILKDVAVFDKLKK 1021
L ++ +++ FD++ K
Sbjct: 1209 QTLPTRKELPDYYQVISKPMDFDRINK 1235
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 283 bits (724), Expect = 1e-75
Identities = 209/752 (27%), Positives = 359/752 (46%), Gaps = 98/752 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ +QW+ L+ GI+ DEMGLGKTIQ I+ +A L ++ + GP L+V P V+
Sbjct: 436 YQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAPKAVLP 495
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NEF TW P A F Y+
Sbjct: 496 NWVNEFATWVPSIAA--------------------------------FLYDG-------- 515
Query: 388 TSLESRKSVKKLLEKVITDG--HIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDS 445
LE RK+++ EK+ +G +++IT Y + L + W Y I+DEGH+++N +S
Sbjct: 516 -RLEERKAIR---EKIAGEGKFNVLITHYDLIMRDKAFLKKIEWYYMIVDEGHRLKNHES 571
Query: 446 DISLTCKQ-LKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
++ T + + R++L+GTPIQN+L ELWSL +F+ P ++ F++ F P
Sbjct: 572 ALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAP----- 626
Query: 505 YANASNIQVKTGYKCAVA--LRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSK 562
+A+ N+ + + + L +I P++LRR K +V K LP K +++L C ++ +QK
Sbjct: 627 FADRGNVSLTDEEELLIIHRLHHVIRPFILRRKKDEVEKFLPGKTQVILKCDMSAWQKVY 686
Query: 563 YLEFLHSDEL-MKIRKGKRQVLYGIDI-LRKICNHPDLL---DLKRKKMNDYEDADYGNP 617
Y + + ++ GK + L + + LRK CNHP L D K + A
Sbjct: 687 YKQVTDMGRVGLQTGSGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRA----- 741
Query: 618 ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTN 677
SGK +++ +LL GH+ LLF+Q +++D+L+ +++ L+D K+LR+DGTT
Sbjct: 742 --SGKFELLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLT-----LNDYKYLRLDGTTK 794
Query: 678 IGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAW 735
R L+ +FN + PY +FLL+TR GGLG+NL A+ +IIFD DWNP D QA +RA
Sbjct: 795 TDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAH 854
Query: 736 RIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGG 795
RIGQK+EV ++ L+ GS+EE I R K + K+++ D ++
Sbjct: 855 RIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIM 914
Query: 796 DNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQ---- 851
G T ++ + I + D+F ++ + + + ++ E++
Sbjct: 915 RKG--TSSLGTDVPSER-EINRLAARSEDEFWMFERMDEERRRKENYRARLMQEQEVPEW 971
Query: 852 ----STEDDRIMGSLFSSANSVDTNERDDIIGAEA------TRNVKSALDALKNSRKQTK 901
T+++++ F + +R +I+ ++ + V+S D K S + +
Sbjct: 972 AYTTQTQEEKLNNGKFHFGSVTGKRKRKEIVYSDTLSELQWLKAVESGEDLSKLSMRYNR 1031
Query: 902 RFDVGTPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSDATQKD 961
R + + T K + K+ +S +S S+ + + +E ++ + +++
Sbjct: 1032 REENASNT---KTSTSKKVIESIQTVSDGTSEEDEEEQEEERAKEMSGKQRVDKSEEEEE 1088
Query: 962 EKSAE-----VLKASIEKYLSQSPGFASKSAD 988
E E + K + K F S+D
Sbjct: 1089 EGEEENDGKAIFKWNTHKKKRSRYSFTCSSSD 1120
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 282 bits (722), Expect = 2e-75
Identities = 195/592 (32%), Positives = 309/592 (51%), Gaps = 56/592 (9%)
Query: 216 RLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQW 275
R K V ++ RD+ PE+LK D I ++ P I LL PYQ + +
Sbjct: 234 RRSKDVDHKRNPRDFQQFDHTPEFLK------DVMI---YLFPA-IEGLLHPYQLEGLNF 283
Query: 276 LCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHT 335
L + + I+ DEMGLGKTIQ IA LA+L + P LV+ P + ++ W EF T
Sbjct: 284 LRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLI--PHLVIAPLSTLRNWEREFAT 341
Query: 336 WWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKS 395
W P V+ G + I E E + D +K +K ++ S +S
Sbjct: 342 WAPQMNVVMY--FGTAQARAV-IREHEF-----------YLSKDQKKIKKKKSGQISSES 387
Query: 396 VKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLK 455
+K ++ +++T+Y + L S L ++W I+DEGH+++N DS + + Q
Sbjct: 388 KQKRIKF-----DVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYS 442
Query: 456 TQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKT 515
+ +RI+L+GTP+QNNL EL+ L F+ GK G+L FQ++F + IN +
Sbjct: 443 SNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD-INQEEQIS-------- 493
Query: 516 GYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKI 575
L +++P+LLRRVK DV KD+P K E++L L+ QK Y + +
Sbjct: 494 ------RLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLT 547
Query: 576 RKGKRQV-LYGIDI-LRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLW 633
+KG Q+ L I + LRK+C HP +L+ ++D +A GK+Q++ ++++
Sbjct: 548 KKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQLLDKMMVKL 607
Query: 634 HSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN--NE 691
QGH+ L++TQ + MLD+L+++ ++K ++ R+DG RQ +D+FN N
Sbjct: 608 KEQGHRVLIYTQFQHMLDLLEDYCTHK-----KWQYERIDGKVGGAERQIRIDRFNAKNS 662
Query: 692 PYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIA 751
FLL+TR GGLGINL A+ +II+D DWNP D+QA RA R+GQ +V IYRL+
Sbjct: 663 NKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINR 722
Query: 752 GSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEE 803
G+IEE++ K L + ++ K + +L D+ G + +E+
Sbjct: 723 GTIEERMMQLTKKKMVLEHLVVGKLKTQN-INQEELDDIIRYGSKELFASED 773
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 282 bits (721), Expect = 2e-75
Identities = 198/682 (29%), Positives = 323/682 (47%), Gaps = 99/682 (14%)
Query: 185 EELLNESAGKLDVIRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHP 244
++LL + + + K + HH +K + D + +I + +
Sbjct: 116 QKLLKQLDSDANKLSKSHSTVSSSSRHH-----RKTEKEEDAELMADEEEEIVDTYQEDI 170
Query: 245 KISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFL 304
+S+ S F+ G L YQ + WL L++ GI+ DEMGLGKT+Q I+FL
Sbjct: 171 FVSE---SPSFVKSGK----LRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFL 223
Query: 305 ATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELE 364
L + +++ GP L++ P + + W EF W P ++LH
Sbjct: 224 GYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHG----------------- 266
Query: 365 KMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEAL 424
+ TR + V+ ++ + D ++IT+Y + AL
Sbjct: 267 ------------------DKDTRADI-----VRNIILEARFD--VLITSYEMVIREKNAL 301
Query: 425 LNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPG 484
+ W Y ++DE H+I+N S +S + ++NR++++GTP+QNNL ELW+L +F+ P
Sbjct: 302 KRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPD 361
Query: 485 KLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLP 544
G +F + F N IQ L +++P+LLRRVK+DV K L
Sbjct: 362 IFGDSELFDEWFEQ--NNSEQDQEIVIQ---------QLHSVLNPFLLRRVKADVEKSLL 410
Query: 545 KKNEMVLFCKLTQYQKSKYLEFLHSD-----ELMKIRKGKRQVLYGIDILRKICNHPDLL 599
K E ++ +T Q Y L D + R+GK ++L + LRK CNHP L
Sbjct: 411 PKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYL- 469
Query: 600 DLKRKKMNDYEDADYGNPA--------RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLD 651
+E A+ G P SGKM ++ +LL +G + L+F+Q ++LD
Sbjct: 470 ---------FEGAEPGPPYTTDEHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLD 520
Query: 652 ILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINL 709
IL+++ ++D E + R+DG+T+ R +D++N N VFLLTTR GGLGINL
Sbjct: 521 ILEDYCYFRDFE-----YCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINL 575
Query: 710 TGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLS 769
A+ +I+FD DWNP D+QA +RA RIGQK++V +YR + +IEEK+ R K L
Sbjct: 576 VTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLD 635
Query: 770 NKILKDPKQKRFFKM----NDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDD 825
+++ K+ + +DL D+ G N +E + + +I + +T +
Sbjct: 636 QLVIQQGTGKKTASLGNSKDDLLDMIQFGAKNMFEKKASKVTVDADIDDILKKGEQKTQE 695
Query: 826 FDKLSQISGVHKLEGFFNSKEQ 847
+ Q G+ L+ F + Q
Sbjct: 696 LNAKYQSLGLDDLQKFNGIENQ 717
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 282 bits (721), Expect = 2e-75
Identities = 203/635 (31%), Positives = 308/635 (47%), Gaps = 108/635 (17%)
Query: 234 PDIPEWL--------KPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCG 285
PD+P++L K ++ + + E F +P I L YQ+ V WL L +
Sbjct: 1 PDLPQYLLDSREKERKFLEQMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELH 60
Query: 286 GIIGDEMGLGKTIQIIAFLATLHHSRK-----------LNGPVLVVCPATVMKQWCNEFH 334
GI+ D+MGLGKT+Q I +A+ H++R+ + P L+VCP+T+ W E
Sbjct: 61 GILCDDMGLGKTLQTICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELS 120
Query: 335 TWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRK 394
T+ PF V + +G P E K+ R
Sbjct: 121 TY-APFLKVSAY-VG---------PPAERAKI--------------------------RS 143
Query: 395 SVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQL 454
+KK +++T+Y R + L+ + W Y +LDEGH I+N + ++ K L
Sbjct: 144 KMKK--------SDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSL 195
Query: 455 KTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVK 514
++ +R+ILSGTPIQNN+ ELWSLFDF+ PG LGT FQ++F PI A +S+ + +
Sbjct: 196 RSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERE 255
Query: 515 TGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF-------- 566
G A+ + P++LRR+K DV DLP K +C ++ Q+ +F
Sbjct: 256 RGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINE 315
Query: 567 -LHSDELMK---IRKGKRQ---VLYGIDILRKICNHPDL-LDLKRKKMNDY------EDA 612
L DE K RK K Q + + +RK+CNHP L L K K N E++
Sbjct: 316 ELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENS 375
Query: 613 DYGNPARSGKMQVVKQLL------------------LLWHSQGHKTLLFTQSRQMLDILQ 654
+ + K+ + QLL L H+ L+F Q + MLD+++
Sbjct: 376 GLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALTNAVSEHRVLIFCQLKDMLDMVE 435
Query: 655 EFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGAN 713
+ + D+ ++R+DG+ RQ V KFNN+P DV LLTT VGGLG+NLTGA+
Sbjct: 436 K--DLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGAD 493
Query: 714 RIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL 773
+I + DWNP D+QA +RA RIGQK+ V +YRL+ G +EEKI Q FK +++ ++
Sbjct: 494 TVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVV 553
Query: 774 KDPKQ-KRFFKMNDLHDLFTLGGDNGYETEEFNQE 807
+ + DLF D + ++E
Sbjct: 554 NQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKE 588
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 281 bits (718), Expect = 5e-75
Identities = 208/712 (29%), Positives = 339/712 (47%), Gaps = 81/712 (11%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ +QW+ LY GI+ DEMGLGKTIQ IA +A L S+ L+GP L++ P V+
Sbjct: 366 YQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLP 425
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NEF W P A + Y+ ++ R
Sbjct: 426 NWENEFALWAPSISAFL-----------------------------------YDGSKEKR 450
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
T + +R + K +++IT Y + L + W Y I+DEGH+++N + +
Sbjct: 451 TEIRARIAGGKF--------NVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECAL 502
Query: 448 SLTC-KQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+ T + + R++L+GTPIQN+L ELWSL +F+ P ++ F++ F P G A
Sbjct: 503 AKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSA 562
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+ ++ + L +I P+LLRR KS+V K LP K +++L C ++ +QK Y +
Sbjct: 563 SLTD---EEELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQV 619
Query: 567 LHSDEL-MKIRKGKRQVLYGIDI-LRKICNHPDLLDLKRKKMNDYEDADYGNPAR----- 619
+ + GK + L + + LRK CNHP L + ADY +
Sbjct: 620 TDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYL----------FVGADYNMCKKPEIVR 669
Query: 620 -SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNI 678
SGK +++ +LL GH+ LLF+Q +++D+L+ ++S L+D +LR+DG+T
Sbjct: 670 ASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLS-----LNDYMYLRLDGSTKT 724
Query: 679 GSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWR 736
R L+ +FN + PY +FLL+TR GGLG+NL A+ IIIFD DWNP D QA +RA R
Sbjct: 725 DQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHR 784
Query: 737 IGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGD 796
IGQK+EV ++ L+ GSIEE I R K + K+++ D ++
Sbjct: 785 IGQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMS 844
Query: 797 NGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQSTEDD 856
G T +++ + I + ++F Q+ + + + ++ +EK+ E
Sbjct: 845 KG--TSSLGEDVPSER-EINRLAARTEEEFWMFEQMDEERRKKENYKTRLMEEKEVPE-- 899
Query: 857 RIMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQTKRFDVGTPTWTGKFGR 916
+ S TN ++ R K A+ + S Q + K +
Sbjct: 900 ---WAYTSETQEDKTNAKNHFGSLTGKRKRKEAVYSDSLSDLQWMKAMESEDEDASKVSQ 956
Query: 917 AGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSDATQKDEKSAEVL 968
K ++T +S N SK L+ E+E+ + E + + +E++ + L
Sbjct: 957 KRKRTDTKTRMS-NGSKAEAVLSESDEEKEEEEEERKEESGKESEEENEKPL 1007
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 275 bits (704), Expect = 2e-73
Identities = 213/662 (32%), Positives = 337/662 (50%), Gaps = 94/662 (14%)
Query: 240 LKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQ 299
L+ I+ ++ + +PG I +L+P+Q+ + WL L+ QG GGI+GD+MGLGKT+Q
Sbjct: 352 LEDEGSITLTGLNLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQ 411
Query: 300 IIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIP 359
I +FLA L HS KL LVV P T++ W E T G+++ T+
Sbjct: 412 ICSFLAGLFHS-KLIKRALVVAPKTLLPHWMKELAT--------------VGLSQMTR-- 454
Query: 360 EEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRL 419
YGT T K+ + L ++ I++TTY +R
Sbjct: 455 ----------EYYGTST-----------------KAREYDLHHILQGKGILLTTYDIVRN 487
Query: 420 HSEALLNV------------RWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPI 467
+++AL +W Y ILDEGH I+NP++ + + ++ + +RII+SGTPI
Sbjct: 488 NTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPI 547
Query: 468 QNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLI 527
QNNL L + F+Q + + I G NA++ + + G A LR+ I
Sbjct: 548 QNNLKAL-------------SFNRFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHI 594
Query: 528 SPYLLRRVKSDVAKD------LPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQ 581
P+ LRR+KS+V D L KK+E+V++ +LT Q+ Y FL+S+ ++ G
Sbjct: 595 QPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSP- 653
Query: 582 VLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTL 641
L + IL+KIC+HP LL KR + E D + + V + L + + T
Sbjct: 654 -LAALTILKKICDHPLLLT-KRAAEDVLEGMD---STLTQEEAGVAERLAMHIADNVDTD 708
Query: 642 LFTQSRQMLDILQEFI-SYKDPELSD-LKFLRMDGTTNIGSRQSLVDKFNN-EPYDVFLL 698
F + FI S D S+ FLR+DGTT R V++F +FLL
Sbjct: 709 DFQTKNDSISCKLSFIMSLLDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLL 768
Query: 699 TTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKI 758
T++VGGLG+ LT A+R+I+ DP WNPSTD Q+ +RA+RIGQ ++V +YRLM + ++EEKI
Sbjct: 769 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKI 828
Query: 759 YHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGN-IKQ 817
Y +Q++K L + +Q R+F DL +LF+L G++ Q++ ++ N IK
Sbjct: 829 YRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSL-PKGGFDVSPTQQQLYEEHYNQIKL 887
Query: 818 NKTSETD-DFDKLSQISGVHKLEGFFNS-------KEQDEKQSTEDDRIMGSLFSSANSV 869
++ E+ F + I+GV F+ ++ +E+Q + ++ S++ S
Sbjct: 888 DEKLESHVKFLETLGIAGVSHHSLLFSKTAPIQAIQKDEEEQIRRETALLLGRASASISQ 947
Query: 870 DT 871
DT
Sbjct: 948 DT 949
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 274 bits (700), Expect = 6e-73
Identities = 180/596 (30%), Positives = 296/596 (49%), Gaps = 74/596 (12%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ +QW+ LY GI+ DEMGLGKTIQ I+ + L ++ NGP LV+ P + +
Sbjct: 420 YQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLT 479
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P ++ KG + L + SN+
Sbjct: 480 NWTMEFERWAPSIVKIVY--------KGPPQVRKALHPQVRHSNF--------------- 516
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+++TTY + L ++W Y I+DEGH+++N S +
Sbjct: 517 --------------------QVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKL 556
Query: 448 SLTCKQL-KTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+ T ++ R+IL+GTP+QNNL ELW+L +FV P ++ F + F P G
Sbjct: 557 TNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQ 616
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+ + + L ++ P+LLRR+K DV +LP K E V+ C+++ Q+ Y +
Sbjct: 617 DKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQM 676
Query: 567 -----LHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPAR-S 620
L+ ++ + + G + + + L+KICNHP + + + + D +Y R S
Sbjct: 677 KKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHPFVFEDVERSI-DPTGFNYDMLWRVS 735
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GK +++ ++L GH+ L+F Q Q+++I+++++ Y+ ++LR+DG+T
Sbjct: 736 GKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQ-----WRYLRLDGSTKADD 790
Query: 681 RQSLVDKFNNEPYDV--FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
R L+ FN+ +V FLL+TR GGLG+NL A+ +IIFD DWNP D+QA++RA RIG
Sbjct: 791 RSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 850
Query: 739 QKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNG 798
Q +EV IYRL+ S+EE I R +K + K+++ K F +
Sbjct: 851 QTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGK----FDNKSTPE--------- 897
Query: 799 YETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQI--SGVHKLEGFFNSKEQDEKQS 852
E E F + +++ ++N D D+L++I G +L F E E++S
Sbjct: 898 -EREAFLRSLLENENGEEENDEKGELDDDELNEILARGDDELRLFKQMTEDLERES 952
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 273 bits (699), Expect = 8e-73
Identities = 185/545 (33%), Positives = 277/545 (49%), Gaps = 64/545 (11%)
Query: 285 GGIIGDEMGLGKTIQIIAFLATL----HHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPF 340
G I+ DEMGLGKT+Q IA + TL ++L ++VCP++++ W NE W P
Sbjct: 330 GCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLGPN 389
Query: 341 RAVILHSIG--AGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKK 398
L G + M G + + + R VK
Sbjct: 390 TLTPLAVDGKKSSMGGGNTTVSQAIHAWAQA---------------------QGRNIVKP 428
Query: 399 LLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQN 458
+L I +Y LR + + L N G + DEGH+++N DS +
Sbjct: 429 VL----------IISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPR 478
Query: 459 RIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYK 518
R+ILSGTPIQN+L+E ++L F PG LG+ F++ F NPI G A+A++ ++ G
Sbjct: 479 RVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEA 538
Query: 519 CAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRK- 577
L ++S +++RR +AK LP K E V+F L Q Y + + S E+ K+ K
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKG 598
Query: 578 -GKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDA----DYGNPAR---------SGKM 623
G Q L I IL+K+CNHP+LL+ + + +D +D DY P S K
Sbjct: 599 VGGSQPLRAIGILKKLCNHPNLLNFE-DEFDDEDDLELPDDYNMPGSKARDVQTKYSAKF 657
Query: 624 QVVKQLL-LLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQ 682
++++ L + K +L + Q LD++++ YK +R+DGT +I RQ
Sbjct: 658 SILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYK-----HYSAVRLDGTMSINKRQ 712
Query: 683 SLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQK 740
LVD+FN+ +FLL+++ GG GINL GANR+I+ DPDWNP+ D QA R WR GQK
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 741 REVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQ--KRFFKMNDLHDLFTLGGDNG 798
++ IYR + G+IEEKI+ RQ K LS+ ++ D K+ +R F ++L LF +
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVV-DAKEDVERLFSSDNLRQLFQKNENTI 831
Query: 799 YETEE 803
ET E
Sbjct: 832 CETHE 836
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 273 bits (699), Expect = 8e-73
Identities = 175/549 (31%), Positives = 288/549 (51%), Gaps = 55/549 (10%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQ + WL + QG I+ DEMGLGKT+Q I FL +L+ GP LV P +
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 759
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W EF W P F V T ++E ++ + F++ D
Sbjct: 760 TIINWEREFEMWAPDFYVV------------TYTGDKESRSVIRENE---FSFED----- 799
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
++ S K V ++ ++V H+++T+Y + + L ++ W ++DE H+++N
Sbjct: 800 ---NAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQ 856
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S K +++L+GTP+QNNL EL+ L +F+ P + L F ++FA+
Sbjct: 857 SKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADI----- 911
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
+ Q+K L DL+ P++LRR+K+DV K++P K E+++ +L+Q QK KY
Sbjct: 912 ---SKEDQIKK-------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQK-KYY 960
Query: 565 EFL--HSDELMKIRKGKRQV-LYGIDI-LRKICNHPDLLDLKRKKMNDYEDADYGNPA-- 618
+F+ + E + + G QV L I + L+K CNHP L + + + Y +
Sbjct: 961 KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLV 1020
Query: 619 -RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTN 677
SGK+ +++++L +GH+ L+F+Q +MLD+L++F+ Y+ K+ R+DG
Sbjct: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEG-----YKYERIDGGIT 1075
Query: 678 IGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAW 735
G RQ +D+FN FLL+TR GGLGINL A+ +II+D DWNP D+QA RA
Sbjct: 1076 GGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAH 1135
Query: 736 RIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKM--NDLHDLFTL 793
RIGQ ++V IYR + S+EE+I K L++ +++ + M +L D+
Sbjct: 1136 RIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKF 1195
Query: 794 GGDNGYETE 802
G + ++ +
Sbjct: 1196 GTEELFKDD 1204
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 270 bits (690), Expect = 9e-72
Identities = 180/554 (32%), Positives = 275/554 (49%), Gaps = 86/554 (15%)
Query: 238 EWLKPHPKISDANISEDFMV-PGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGK 296
E LK D +I F P + L PYQ V WL L++ GI+ DEMGLGK
Sbjct: 168 ELLKEEDSDDDESIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGK 227
Query: 297 TIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGT 356
T+Q I+FL L + K+ GP LV+ P + + W E + W P A IL
Sbjct: 228 TLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFIL----------- 276
Query: 357 QIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVG 416
Q +EE +++ KKLL D ++I +Y
Sbjct: 277 QGDKEERAELIQ----------------------------KKLLG---CDFDVVIASYEI 305
Query: 417 LRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWS 476
+ L + W Y I+DE H+I+N +S +S ++ ++NR++++GTP+QNNL ELW+
Sbjct: 306 IIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWA 365
Query: 477 LFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVK 536
L +F+ P F F+ S + K L ++ P+LLRR+K
Sbjct: 366 LLNFLLPDIFSDAQDFDDWFS-----------SESTEEDQDKIVKQLHTVLQPFLLRRIK 414
Query: 537 SDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKI------RKGKRQVLYGIDILR 590
SDV L K E+ L+ ++ QK Y + L D L + ++ K ++L + LR
Sbjct: 415 SDVETSLLPKKELNLYVGMSSMQKKWYKKILEKD-LDAVNGSNGSKESKTRLLNIMMQLR 473
Query: 591 KICNHPDLLDLKRKKMNDYEDADYGNPA--------RSGKMQVVKQLLLLWHSQGHKTLL 642
K CNHP L D A+ G P + K+QV+ +LL +G + L+
Sbjct: 474 KCCNHPYLFD----------GAEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLI 523
Query: 643 FTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN--NEPYDVFLLTT 700
F+Q ++LDIL+++ +++ E + R+DG+T R +D +N + VFLLTT
Sbjct: 524 FSQMSRLLDILEDYCYFRNYE-----YCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTT 578
Query: 701 RVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYH 760
R GGLGINLT A+ ++++D DWNP D+QA +RA RIGQK++V ++RL+ S+EEKI
Sbjct: 579 RAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILE 638
Query: 761 RQIFKQFLSNKILK 774
R K L +++
Sbjct: 639 RATQKLRLDQLVIQ 652
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 270 bits (690), Expect = 9e-72
Identities = 181/583 (31%), Positives = 293/583 (50%), Gaps = 66/583 (11%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L YQ + WL + QG I+ DEMGLGKTIQ I FL +L+ GP LV P +
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLS 795
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W EF W P F V T +++ ++ + F++ D
Sbjct: 796 TIINWEREFQMWAPKFYVV------------TYTGDKDSRAIIRENE---FSFED----- 835
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
+++ K K+ + H+++T+Y + + AL ++RW ++DE H+++N
Sbjct: 836 ---NAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQ 892
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S K ++++L+GTP+QNNL EL+ L +F+ P + L F ++FA+
Sbjct: 893 SKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADI----- 947
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
+ Q+K L DL+ P++LRR+K+DV K++P K E+++ +L+ QK Y
Sbjct: 948 ---SKEDQIKK-------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYK 997
Query: 565 EFLHSD-ELMKIRKGKRQV-LYGIDI-LRKICNHPDLLDLKRKKMNDYEDADYGNPA--- 618
L + E + R G QV L I + L+K CNHP L + + Y A
Sbjct: 998 YILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIK 1057
Query: 619 RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNI 678
SGK+ +++++L QGH+ L+F+Q +MLD+L++F+ Y+ K+ R+DG
Sbjct: 1058 SSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG-----YKYERIDGGITG 1112
Query: 679 GSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWR 736
RQ +D+FN FLL+TR GGLGINL A+ +IIFD DWNP D+QA RA R
Sbjct: 1113 ALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHR 1172
Query: 737 IGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMN--DLHDLFTLG 794
IGQ +V IYR + S+EE+I K L++ +++ + M+ +L D+ G
Sbjct: 1173 IGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFG 1232
Query: 795 GDNGYETE-------------EFNQEIVKQTGNIKQNKTSETD 824
+ ++ E ++ E + + + Q+ T +TD
Sbjct: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTD 1275
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 270 bits (689), Expect = 1e-71
Identities = 203/702 (28%), Positives = 325/702 (45%), Gaps = 100/702 (14%)
Query: 97 EIKERIKGLKETNEADTTTKSTERQPGESERDFLLRTGKITGFGNSV----NFKVEDEEE 152
E +ER+K +E +E + ++ R G + + G + +++ E++EE
Sbjct: 15 EEEERVKDNEEEDEEEL--EAVARSSGSDDDEVAAADESPVSDGEAAPVEDDYEDEEDEE 72
Query: 153 SKSILLAERQMLKN---IXXXXXXXXXXXXFISDSEELLNESAGKLDVIRKPAE-----A 204
I E+ LK + S ++ N+ G+L + + E A
Sbjct: 73 KAEISKREKARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFA 132
Query: 205 IDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPK-ISDANISEDFMVPGDIFP 263
DG + + + A++ + + D E+LK ++ + + P I
Sbjct: 133 KSDGSSSQKKAKGRGRHASKITEEEEDE-----EYLKEEEDGLTGSGNTRLLTQPSCIQG 187
Query: 264 LLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPA 323
+ YQ + WL LY+ G GI+ DEMGLGKT+Q I+ LA LH R +NGP +VV P
Sbjct: 188 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPK 247
Query: 324 TVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKK 383
+ + W NE + P RAV F N E++
Sbjct: 248 STLGNWMNEIRRFCPVLRAV------------------------------KFLGNPEERR 277
Query: 384 EKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNP 443
L + K I +T++ AL W Y I+DE H+I+N
Sbjct: 278 HIREDLLVAGKF------------DICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNE 325
Query: 444 DSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMG 503
+S +S T + T R++++GTP+QNNL ELW+L +F+ P + F + F
Sbjct: 326 NSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQ------ 379
Query: 504 GYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKY 563
+ N Q + + L ++ P+LLRR+KSDV K LP K E +L ++Q QK Y
Sbjct: 380 --ISGENDQQEVVQQ----LHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY 433
Query: 564 LEFLHSDELMKIRKGKRQVLYGIDI-LRKICNHPDLLDLKRKKMNDYEDADYGNP----- 617
L D G+R+ L I + LRK CNHP L ++ A+ G P
Sbjct: 434 KALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYL----------FQGAEPGPPYTTGD 483
Query: 618 ---ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDG 674
+GKM ++ +LL + + L+F+Q ++LDIL++++ Y+ + R+DG
Sbjct: 484 HLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG-----YLYCRIDG 538
Query: 675 TTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARE 732
T R + ++ +N + VFLL+TR GGLGINL A+ +I++D DWNP D+QA++
Sbjct: 539 NTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQD 598
Query: 733 RAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK 774
RA RIGQK+EV ++R +IEEK+ R K L +++
Sbjct: 599 RAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 269 bits (687), Expect = 2e-71
Identities = 189/560 (33%), Positives = 286/560 (50%), Gaps = 76/560 (13%)
Query: 264 LLFPYQKTCVQWLCELYQ------QGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPV 317
+L P+Q+ V+++ E + GC I+ DEMGLGKT+Q + + TL P
Sbjct: 155 ILRPHQREGVRFMYECVEGKRGNFNGC--IMADEMGLGKTLQCVTLVWTLLRQGPECKPT 212
Query: 318 L----VVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYG 373
+ VV P++++K W EF W LH + + G
Sbjct: 213 INKAIVVSPSSLVKNWEKEFTKW--------LHG----------------RLLCLPMEGG 248
Query: 374 TFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAI 433
T KE T +LE L + ++ +Y R+++E L G I
Sbjct: 249 T--------KENTIRALEQFSMTSARLGTPV-----LLISYETFRIYAEILCKYEVGMVI 295
Query: 434 LDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQ 493
DEGH+++N D+ LKT+ R++LSGTPIQN+LTE +SL +FV P LGT VF+
Sbjct: 296 CDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFK 355
Query: 494 QQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFC 553
+ F + I G +++ + + + L L+ ++RR + K LP K EMV+
Sbjct: 356 RNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICA 415
Query: 554 KLTQYQKSKYLEFLHSDELMKI-----RKGKRQVLYGIDILRKICNHPDLLDLK---RKK 605
KLT Q Y FL SD++ + K L I L+KIC+HPDL+ K R+K
Sbjct: 416 KLTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREK 475
Query: 606 ---------MNDYEDADYGNPARSGKMQVVKQLLLLWHSQGH-KTLLFTQSRQMLDILQE 655
++Y+ D NP SGK ++ +L ++G+ K +L + Q LD+ ++
Sbjct: 476 GFENSQNVLPSNYKPKDL-NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQ 534
Query: 656 FISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGAN 713
+ F+R+DGT +I R +VD+FN+ D +F+L+++ GG G+NL GAN
Sbjct: 535 LARKR-----KYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGAN 589
Query: 714 RIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL 773
R+ +FDPDWNP+ D QA R WR GQK+ IYRL+ +GSIEEKI RQ K+ LS+ I+
Sbjct: 590 RLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII 649
Query: 774 -KDPKQKRFFKMNDLHDLFT 792
+ ++ F +DL DLFT
Sbjct: 650 DNNESAEKHFTRDDLKDLFT 669
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 267 bits (682), Expect = 7e-71
Identities = 188/592 (31%), Positives = 286/592 (47%), Gaps = 88/592 (14%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL LY+ G GI+ DEMGLGKT+Q I+ L + H R + GP +V+ P + +
Sbjct: 183 YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH 242
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W +EF W P R+V L IG +K+++
Sbjct: 243 NWMSEFKRWVPTLRSVCL--IG-------------------------------DKEQRAA 269
Query: 388 TSLESRKSVKKLLEKVITDGH--IIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDS 445
+ V+ G + +T+Y L W Y ++DE H+I+N S
Sbjct: 270 -----------FVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKS 318
Query: 446 DISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGY 505
+S ++ KT NR++L+GTP+QNNL ELWSL +F+ P + F F +G
Sbjct: 319 KLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ 378
Query: 506 ANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLE 565
K L ++ P+LLRR+K+DV K LP K E+ ++ L++ Q+ Y
Sbjct: 379 ------------KLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTR 426
Query: 566 FLHSDELMKIRKGKRQVLYGIDIL---RKICNHPDLLDLKRKKMNDYEDADYGNPARSGK 622
L D + GK + ++IL RK CNHP L D + D SGK
Sbjct: 427 ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD--GAEPGPPYTTDMHLVTNSGK 484
Query: 623 MQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQ 682
M V+ +LL QG + L+F+Q ++LDIL+++ +++ E + R+DG T RQ
Sbjct: 485 MVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYE-----YCRLDGQTPHDERQ 539
Query: 683 SLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQK 740
++ +N N VF+L+TR GGLGINL A+ +I++D DWNP D+QA +RA RIGQ
Sbjct: 540 DSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQT 599
Query: 741 REVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYE 800
+ V ++R + ++EE+I R K L + ++ +Q R N L +G D
Sbjct: 600 KTVRVFRFITDNTVEERIVERAEMKLRLDSIVI---QQGRLVDQN----LNKIGKD---- 648
Query: 801 TEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQS 852
E Q I ++ +K SE D D I G+ + G + E +EK S
Sbjct: 649 --EMLQMIRHGATHVFASKESEITDED----IDGILE-RGAKKTAEMNEKLS 693
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 267 bits (682), Expect = 7e-71
Identities = 206/785 (26%), Positives = 345/785 (43%), Gaps = 106/785 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ ++W+ LY GI+ DEMGLGKTIQ IA + L ++LNGP L++ P + +
Sbjct: 723 YQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLS 782
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P S+ KGT L L + +
Sbjct: 783 NWTYEFDKWAP--------SVVKISYKGTPAMRRSLVPQLRSGKF--------------- 819
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
++++TTY + L +RW Y I+DEGH+++N +
Sbjct: 820 --------------------NVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKL 859
Query: 448 SLTCK-QLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+ RI+L+GTP+QN L ELW+L +F+ P + F+Q F P M G
Sbjct: 860 TQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG-- 917
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
++ + L ++ P+LLRR+K +V LP+K E V+ C ++ QK Y
Sbjct: 918 ERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM 977
Query: 567 -----LHSDELMKIRKGK---RQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYG--N 616
L +D K +KGK + ++ I LRKICNHP + + ++ G N
Sbjct: 978 QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVIN 1037
Query: 617 PAR----SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRM 672
A SGK +++ ++L + H+ LLF Q ++ I++++ ++++ +LR+
Sbjct: 1038 GAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRN-----FLYLRL 1092
Query: 673 DGTTNIGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQA 730
DGTT R +L+ KFN Y +FLL+TR GGLG+NL A+ ++IFD DWNP D+QA
Sbjct: 1093 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQA 1152
Query: 731 RERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK----DPKQKRFFKMND 786
++RA RIGQ+ EV + RL S+EEKI +K + K+++ D K +
Sbjct: 1153 QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAF 1212
Query: 787 LHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKE 846
L + +E E ++ V + Q ++FD ++ + E N K
Sbjct: 1213 LQAILE------HEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKR 1266
Query: 847 QDEKQSTEDDRIMGSLFSSANSVD---TNERDDIIGAEATRNVKSALDALKNSRKQTKRF 903
+ + E+D + + V+ E ++ I +R R+
Sbjct: 1267 --KPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSR-----------QRRDVDYS 1313
Query: 904 DVGTPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSDATQKDEK 963
D T + G + + + K R +++D +ED++ ++
Sbjct: 1314 DALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDP------AKEDVEKAKKRRGRP 1367
Query: 964 SAEVLKASIEKYLSQSP-------GFASKSADLVIRVGLQLTNSTDVERVRKILKDVAVF 1016
AE L + K Q + S + V +QL + ++ ++++ F
Sbjct: 1368 PAEKLSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF 1427
Query: 1017 DKLKK 1021
K+K+
Sbjct: 1428 KKIKE 1432
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 266 bits (679), Expect = 2e-70
Identities = 180/600 (30%), Positives = 297/600 (49%), Gaps = 66/600 (11%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQ + WL + QG I+ DEMGLGKT+Q FL +L+ GP LV P +
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLS 785
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W EF W P V T + +++ ++ + F++ D
Sbjct: 786 TIINWEREFEMWAPDMYVV------------TYVGDKDSRAIIRENE---FSFED----- 825
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
++ K ++ ++ H+++T+Y + + L ++ W I+DE H+++N
Sbjct: 826 ---NAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQ 882
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S Q++++L+GTP+QNNL EL+ L +F+ P + L F ++FA+
Sbjct: 883 SKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADI----- 937
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
A Q+K L D++ P++LRR+K+DV K++P K E+++ +L+ QK Y
Sbjct: 938 ---AKEDQIKK-------LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYK 987
Query: 565 EFLHSD-ELMKIRKGKRQV--LYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPA--- 618
L + E + R G QV L + L+K CNHP L + + + Y A
Sbjct: 988 YILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIR 1047
Query: 619 RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNI 678
SGK+ +++++L GH+ L+F+Q +MLD+L++F+ ++ K+ R+DG
Sbjct: 1048 ASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEG-----YKYERIDGGITG 1102
Query: 679 GSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWR 736
RQ +D+FN FLL+TR GGLGINL A+ +II+D DWNP D+QA RA R
Sbjct: 1103 NMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHR 1162
Query: 737 IGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMN--DLHDLFTLG 794
IGQ ++V IYR + S+EE+I K L++ +++ + M+ +L D+ G
Sbjct: 1163 IGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFG 1222
Query: 795 GDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQSTE 854
+ E F E G+ K+ + S +D + +L + QDE + TE
Sbjct: 1223 TE-----ELFKDEATDGGGDNKEGEDSSVIHYDD----KAIERL----LDRNQDETEDTE 1269
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 266 bits (679), Expect = 2e-70
Identities = 183/612 (29%), Positives = 288/612 (46%), Gaps = 83/612 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ ++W+ LY GI+ DEMGLGKTIQ IA + L ++LNGP L++ P + +
Sbjct: 723 YQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLS 782
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P S+ KGT L L + +
Sbjct: 783 NWTYEFDKWAP--------SVVKISYKGTPAMRRSLVPQLRSGKF--------------- 819
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
++++TTY + L +RW Y I+DEGH+++N +
Sbjct: 820 --------------------NVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKL 859
Query: 448 SLTCK-QLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+ RI+L+GTP+QN L ELW+L +F+ P + F+Q F P M G
Sbjct: 860 TQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG-- 917
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
++ + L ++ P+LLRR+K +V LP+K E V+ C ++ QK Y
Sbjct: 918 ERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM 977
Query: 567 -----LHSDELMKIRKGK---RQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYG--N 616
L +D K +KGK + ++ I LRKICNHP + + ++ G N
Sbjct: 978 QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVIN 1037
Query: 617 PAR----SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRM 672
A SGK +++ ++L + H+ LLF Q ++ I++++ ++++ +LR+
Sbjct: 1038 GAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRN-----FLYLRL 1092
Query: 673 DGTTNIGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQA 730
DGTT R +L+ KFN Y +FLL+TR GGLG+NL A+ ++IFD DWNP D+QA
Sbjct: 1093 DGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQA 1152
Query: 731 RERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK----DPKQKRFFKMND 786
++RA RIGQ+ EV + RL S+EEKI +K + K+++ D K +
Sbjct: 1153 QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAF 1212
Query: 787 LHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSK- 845
L + +E E ++ V + Q ++FD ++ + E N K
Sbjct: 1213 LQAILE------HEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKR 1266
Query: 846 -----EQDEKQS 852
E+DE S
Sbjct: 1267 KPRLMEEDELPS 1278
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 265 bits (678), Expect = 2e-70
Identities = 176/561 (31%), Positives = 277/561 (49%), Gaps = 86/561 (15%)
Query: 258 PGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPV 317
P I L YQ + WL LY+ G GI+ DEMGLGKT+Q I+ LA LH R +NGP
Sbjct: 174 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 233
Query: 318 LVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEE--LEKMLMTSNYGTF 375
+VV P + + W NE + P RAV K PEE + + L+ +
Sbjct: 234 MVVAPKSTLGNWMNEIRRFCPVLRAV----------KFLGNPEERRHIREELLVAGKFDI 283
Query: 376 TYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILD 435
+E K +T+L W Y I+D
Sbjct: 284 CVTSFEMAIKEKTTLR----------------------------------RFSWRYIIID 309
Query: 436 EGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQ 495
E H+I+N +S +S T + T R++++GTP+QNNL ELW+L +F+ P + F +
Sbjct: 310 EAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEW 369
Query: 496 FANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKL 555
F + N Q + + L ++ P+LLRR+KSDV K LP K E +L +
Sbjct: 370 FQ--------ISGENDQQEVVQQ----LHKVLRPFLLRRLKSDVEKGLPPKKETILKVGM 417
Query: 556 TQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDI-LRKICNHPDLLDLKRKKMNDYEDADY 614
+Q QK Y L D + G+R+ L I + LRK CNHP L ++ A+
Sbjct: 418 SQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRKCCNHPYL----------FQGAEP 467
Query: 615 GNP--------ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSD 666
G P +GKM ++ +LL + + L+F+Q ++LDIL++++ Y+
Sbjct: 468 GPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRG----- 522
Query: 667 LKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNP 724
++ R+DG T R + ++ +N + VFLL+TR GGLGINL A+ +I++D DWNP
Sbjct: 523 YQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 582
Query: 725 STDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPK--QKRFF 782
D+QA++RA RIGQK+EV ++R +IE K+ R K L +++ + +++
Sbjct: 583 QVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKTV 642
Query: 783 KMNDLHDLFTLGGDNGYETEE 803
++L + G + + +++
Sbjct: 643 NKDELLQMVRYGAEMVFSSKD 663
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 264 bits (674), Expect = 6e-70
Identities = 221/773 (28%), Positives = 348/773 (44%), Gaps = 116/773 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL + + I+ DEMGLGKTIQ I+FL+ L H +L GP L+V P + +
Sbjct: 487 YQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P V+ IG M++ T +YE
Sbjct: 547 SWQREFEIWAPEINVVVY--IGDLMSRNT--------------------IREYEWIHSQT 584
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
L+ + +ITTY L L ++ W + +DE H+++N DS +
Sbjct: 585 KRLKF---------------NALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLL 629
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
T K+ +R++++GTP+QN+L ELWSL F+ P K F + F G
Sbjct: 630 YKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFE----FWEDFEEDHGKGR--- 682
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
+ GY+ +L ++ P+LLRRVK DV K LP K E +L +++ QK +Y +++
Sbjct: 683 ------ENGYQ---SLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK-QYYKWI 732
Query: 568 HSDELMKIRKGKRQVLYG----IDILRKICNHPDLLDLKRKKMNDYEDAD---YGNPARS 620
+ + KG R G + L+K CNH L+ K + N+ E+ S
Sbjct: 733 LTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLI--KPPEENERENGQEILLSLIRSS 790
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GK+ ++ +LL +G++ L+F+Q +MLDIL E+++ K F R+DG+
Sbjct: 791 GKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKH-----YPFQRLDGSIKGEI 845
Query: 681 RQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
R+ +D FN + + FLL+TR GGLGINL A+ ++IFD DWNP D+QA+ RA RIG
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query: 739 QKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNG 798
QK++V IYRL+ G++EE+I R K L + +++ +M+
Sbjct: 906 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ--------RMDTTGRTILENNSGR 957
Query: 799 YETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQSTEDDRI 858
+ FN+E + T +K +D K +LEG E+ E Q + D I
Sbjct: 958 SNSNPFNKE--ELTAILKFG----AEDLFK--------ELEG-----EESEPQEMDIDEI 998
Query: 859 MGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQTKRFDVGTPTWTGK----- 913
+ + N V T+ D+++ N + D + + K +D P K
Sbjct: 999 LRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEE 1058
Query: 914 --------FGRAGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSDATQKDEKSA 965
+IR S TNDS + R + E SD +K ++
Sbjct: 1059 ERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSDDDKKPKRRG 1118
Query: 966 EVLKASIEKYLSQSPGFASKSADLVIRVGLQLTNSTDVERVRKILKDVAVFDK 1018
S+ K L + GF I+ + +ER+ + +D + DK
Sbjct: 1119 R--PRSVRKDLVE--GFTDAEIRRFIKAYKKF--GLPLERLECLARDAELVDK 1165
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 264 bits (674), Expect = 6e-70
Identities = 191/676 (28%), Positives = 317/676 (46%), Gaps = 122/676 (18%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + +L + I+ DEMGLGKT+Q ++ L L +++++ GP LVV P + +
Sbjct: 644 YQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLA 703
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P ++ GT+ E K ND K +
Sbjct: 704 NWAKEFRKWLPGMNIIVY--------VGTRASREVRNKT-----------NDVHKVGRP- 743
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+ ++TTY + L ++W Y ++DE H+++N ++ +
Sbjct: 744 -----------------IKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQL 786
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
+ T+N+++++GTP+QN++ ELW+L F+ PGK F + + N ++ +
Sbjct: 787 YTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKN-LSSFNESE 845
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
+N+ ++ + P++LRRV DV K LP K E +L +++ QK Y L
Sbjct: 846 LANLHLE------------LRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWIL 893
Query: 568 HSD--ELMKIRKGKRQVLYGIDI-LRKICNHPDLLDLKRKKMNDYEDADYGNPA------ 618
+ +L K +G + L I + L+K CNHP L +E AD+G
Sbjct: 894 ERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFL----------FESADHGYGGDINDNS 943
Query: 619 -------RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLR 671
SGK+ ++ +LL+ H+ L+F+Q +MLDIL E++S L +F R
Sbjct: 944 KLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLS-----LRGFQFQR 998
Query: 672 MDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQ 729
+DG+T RQ +D FN D FLL+TR GGLGINL A+ ++IFD DWNP D+Q
Sbjct: 999 LDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQ 1058
Query: 730 ARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL-----------KDPKQ 778
A RA RIGQ+ V IYR + + S+EE+I R K L + ++ ++ K+
Sbjct: 1059 AMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEGRLEKRETKK 1118
Query: 779 KRFFKMNDLHDLFTLGGDNGYETEEFNQ------------EIVKQTGNIKQNKTSETDDF 826
F N+L + G + ++ ++ ++ EI+++ +++ T ET+
Sbjct: 1119 GSNFDKNELSAILRFGAEELFKEDKNDEESKKRLLSMDIDEILERAEQVEEKHTDETE-- 1176
Query: 827 DKLSQISGVHKLEGFFNSKEQDEKQSTEDDRIMGSLFSSANSVDTNERDDIIGAEATRNV 886
++ G K+ F N+ EDD S + +SV T E + + A RN
Sbjct: 1177 ---HELLGAFKVANFCNA---------EDDGSFWSRWIKPDSVVTAE--EALAPRAARNT 1222
Query: 887 KSALDALKNSRKQTKR 902
KS +D R ++
Sbjct: 1223 KSYVDPSHPDRTSKRK 1238
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 263 bits (672), Expect = 1e-69
Identities = 172/539 (31%), Positives = 271/539 (49%), Gaps = 82/539 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL L GI+ DEMGLGKT+Q I+ + + H + P LV+ P + ++
Sbjct: 97 YQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQ 156
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NEF W P AV+L A N + L +++ + YE K +
Sbjct: 157 NWANEFKKWCPSINAVVLIGDEAARN-------QVLRDVILPQKFDVCC-TTYEMMLKVK 208
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
T L KKL W Y I+DE H+I+N S +
Sbjct: 209 TQL------KKL----------------------------NWRYIIIDEAHRIKNEKSKL 234
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
S T ++L ++NR++++GTP+QNNL ELW+L +F+ P + F F+N G N
Sbjct: 235 SETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSG---N 291
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
+Q L ++ P+LLRR+KSDV K L K E+ ++ L++ Q+ Y + L
Sbjct: 292 TDLVQ---------RLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVL 342
Query: 568 HSDELMKIRKGKRQVLYGIDIL---RKICNHPDLLDLKRKKMNDYEDADYGNPA------ 618
D + GK + ++IL RK NHP L D A+ G P
Sbjct: 343 MKDIDIINGAGKVEKARLMNILMHLRKCVNHPYLFD----------GAEPGPPFTTDQHL 392
Query: 619 --RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
SGKM V+ +LL+ + QG + L+F+Q +MLD+L++F ++ E + R+DG+T
Sbjct: 393 VDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYE-----YCRLDGST 447
Query: 677 NIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
R + ++ +N + +F+LTTR GGLGINL A+ +II+D DWNP +D+QA +RA
Sbjct: 448 PHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRA 507
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTL 793
RIGQK++V ++RL+ +++E+I + K L N +++ + K D+ ++
Sbjct: 508 HRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISM 566
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 263 bits (672), Expect = 1e-69
Identities = 206/694 (29%), Positives = 313/694 (44%), Gaps = 101/694 (14%)
Query: 217 LKKWVANRSKDRDYDNQPDIPEW----LKPHPKISDANISEDFMVPGDIFPLLFPYQKTC 272
L+KW + D ++ P +K PK S +F+ G L YQ
Sbjct: 479 LRKWQRCAEQFNDRESSKCTPSRHCRVIKYRPKFSRIKNQPEFLSSG---LTLRDYQMDG 535
Query: 273 VQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNE 332
+ WL + + I+ DEMGLGKTIQ I FL +L L GP L V P + M W E
Sbjct: 536 LNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQRE 595
Query: 333 FHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLES 392
F W P MN T + + + +++ + ES
Sbjct: 596 FDLWAPD------------MNVVTYLGDIKSRELIQQYEW----------------QFES 627
Query: 393 RKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCK 452
K +K + I+TTY + + L ++W ++DE H+++N DS + + K
Sbjct: 628 SKRLKF---------NCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLK 678
Query: 453 QLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQ 512
+ T +R++++GTP+QN+L ELW+L F+ P K T F+ Q N + G
Sbjct: 679 EFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQHGNAEDKG--------- 729
Query: 513 VKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL--HSD 570
L + PY+LRRVK DV K LP K E +L ++T QK Y L + D
Sbjct: 730 -------YTRLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFD 782
Query: 571 ELMKIRKGKRQVLYGIDI-LRKICNHPDLLDLKRKKMN--DYEDADYGNPARSGKMQVVK 627
L K ++G I I L+K CNH L+ ++ ++A SGK+ ++
Sbjct: 783 ALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLD 842
Query: 628 QLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDK 687
+LL GH+ L+F+Q +MLD+L +++ + F R+DG+ R+ +D
Sbjct: 843 KLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRH-----FPFQRLDGSIKGEMRRQALDH 897
Query: 688 FNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTI 745
FN E FLL+TR GGLGINL A+ +IIFD DWNP D+QA+ RA RIGQK +V I
Sbjct: 898 FNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNI 957
Query: 746 YRLMIAGSIEEKIYHRQIFKQFLSNKILK----------------DPKQKRFFKMNDLHD 789
YRL+ A S+EE+I R K L + +++ F +DL
Sbjct: 958 YRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNSNPFNKDDLSA 1017
Query: 790 LFTLGGDNGYETE-EFNQEIVKQTGNIKQNKTSETDD----FDKLSQISGVHKLEGFFNS 844
+ G + ++ E E + ++V I + + +D D L V + F
Sbjct: 1018 ILKFGAEELFKDEQEHDDDLVCDIDEILRRAETRNEDPEMPADDLLSAFKVASIAAF--E 1075
Query: 845 KEQDEKQSTEDDRIMGSLFSSANSVDTNERDDII 878
+E + S +D G D+ + DDII
Sbjct: 1076 EEPSDSVSKQDQNAAG------EEDDSKDWDDII 1103
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 262 bits (670), Expect = 2e-69
Identities = 188/592 (31%), Positives = 288/592 (47%), Gaps = 91/592 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
+Q T + W+ L+ + GI+ DEMGLGKT+Q + FL+ L HS K +GP L+V P + +
Sbjct: 393 FQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVP 452
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W W P L+SI N ++ E E L T+
Sbjct: 453 AWQETLANWTPD-----LNSICYTGNTESRANIREYEFYLSTN----------------- 490
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
SRK +I++TTY + + L N+RW Y +DE H+++N +S +
Sbjct: 491 ----SRK----------LKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSL 536
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
T Q +T NR++++GTP+QNNL EL SL +F+ PGK + +N +
Sbjct: 537 YETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPGKF--------YIRDELNF----D 584
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
N + + + L++ + P++LRR+K DV K LP K+E +L +L+ Q Y L
Sbjct: 585 QPNAEQERDIR---DLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNIL 641
Query: 568 ---------HSDELMKIRKGKRQVLYGIDILRKICNHPDLLD------LKRKKMNDYEDA 612
H+D +G+ +L + L+K+ NHP L + +KM ED
Sbjct: 642 TKNYRALTGHTDG-----RGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTR-EDT 695
Query: 613 DYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRM 672
G SGKM ++ +LL GH+ L+F+Q +ML+IL E++S L + R+
Sbjct: 696 LRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMS-----LRGYNYQRL 750
Query: 673 DGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQA 730
DGT R+ +D FN + P VFLL+TR GGLGINL A+ +IIFD DWNP D+QA
Sbjct: 751 DGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQA 810
Query: 731 RERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL--------KDPKQKRFF 782
RA RIGQK V +YR + ++EE I R K L I+ K+ K + +
Sbjct: 811 MARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKNDK-Y 869
Query: 783 KMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISG 834
+L + G N ++ E +++ + S +D D + + G
Sbjct: 870 DAQELSAILKFGASNMFKATENQKKLENMN---LDDILSHAEDRDSSNDVGG 918
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 262 bits (670), Expect = 2e-69
Identities = 183/612 (29%), Positives = 284/612 (45%), Gaps = 109/612 (17%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL LY+ G GI+ DEMGLGKT+Q IA L L H R + GP +V+ P + +
Sbjct: 186 YQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLH 245
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NEF W P R + +G + I +E +
Sbjct: 246 NWMNEFKRWVPSLRVICF--VGDKDARAAFIRDEMMPG---------------------- 281
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+ + +T+Y + W Y ++DE H+I+N S +
Sbjct: 282 ------------------EWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKL 323
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
S ++ K+ NR++L+GTP+QNNL ELW+L +F+ P + F F +G
Sbjct: 324 SEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ-- 381
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
K L ++ P+LLRR+K+DV K LP K E+ ++ L++ Q+ Y + L
Sbjct: 382 ----------KLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKIL 431
Query: 568 HSDELMKIRKGKRQVLYGIDIL---RKICNHPDLLDLKRKKMNDYEDADYGNP------- 617
D + GK + ++IL RK CNHP L D A+ G P
Sbjct: 432 MKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFD----------GAEPGPPYTTDEHI 481
Query: 618 -ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
+ SGKM V+ +LL QG + L+F+Q ++LDIL+++ ++ E + R+DG T
Sbjct: 482 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYE-----YCRLDGQT 536
Query: 677 N-------------IGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPD 721
+G R++ ++ FN N +F+L+TR GGLGINL A+ +I++D D
Sbjct: 537 PHEEREDKFLEVEFLGQREA-IEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSD 595
Query: 722 WNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRF 781
WNP D+QA +RA RIGQK+ V ++RL+ ++EE+I R K L + ++ +Q R
Sbjct: 596 WNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRL 652
Query: 782 FKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGF 841
N EE Q I ++ +K SE D D + + K
Sbjct: 653 IDQQ----------SNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAE 702
Query: 842 FNSKEQDEKQST 853
N + Q +S+
Sbjct: 703 MNERLQKMGESS 714
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 261 bits (668), Expect = 3e-69
Identities = 211/712 (29%), Positives = 322/712 (44%), Gaps = 101/712 (14%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL + +G I+ DEMGLGKTIQ I+FL L H +L GP L+V P + +
Sbjct: 484 YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT 543
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W E TW AV+ D + R
Sbjct: 544 SWQREIQTWASQMNAVVY-------------------------------LGDINSRNMIR 572
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
T + K+L +I++TTY L L + W + +DE H+++N DS +
Sbjct: 573 THEWTHHQTKRL------KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLL 626
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
T K+ +R++++GTP+QN+L ELWSL F+ P K + F+++ G YA+
Sbjct: 627 YKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYG-YAS 685
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
L + P+LLRRVK DV K LP K E +L +++ QK Y L
Sbjct: 686 ---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWIL 730
Query: 568 HSD--ELMKIRKGKRQVLYGIDI-LRKICNHPDLLDLKRKKMNDY---EDADYGNPARSG 621
+ L K KG I + L+K CNH L+ K N++ ++A SG
Sbjct: 731 TRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLI--KPPDNNEFYNKQEALQHLIRSSG 788
Query: 622 KMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSR 681
K+ ++ +LL+ +G++ L+F+Q +MLDIL E++ Y+ F R+DG+ R
Sbjct: 789 KLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQ-----FPFQRLDGSIKGELR 843
Query: 682 QSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
+ +D FN E + FLL+TR GGLGINL A+ ++IFD DWNP D+QA+ RA RIGQ
Sbjct: 844 KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ 903
Query: 740 KREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK--------------DPKQKRFFKMN 785
K++V IYRL+ GS+EE I R K L + +++ P F
Sbjct: 904 KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKE 963
Query: 786 DLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSK 845
+L + G + ++ E ++ ++ + K +ET + + G L F K
Sbjct: 964 ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQF---K 1020
Query: 846 EQDEKQSTEDDRIMGSLFSSANSVDTNERDDIIGAEATRNVKS-----ALDALKNSRKQT 900
+ EDD + +S N + D E K L ++N KQ
Sbjct: 1021 VANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQI 1080
Query: 901 KRFDVGTPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNRD---TLEREKIK 949
++ G GR + R+ + S + S+ R R T+ RE IK
Sbjct: 1081 --------SFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRPRTIPRENIK 1124
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 261 bits (668), Expect = 3e-69
Identities = 165/528 (31%), Positives = 258/528 (48%), Gaps = 67/528 (12%)
Query: 264 LLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPA 323
+L YQ ++WL LY GI+ DEMGLGKTIQ IA + L +++NGP L++ P
Sbjct: 753 VLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 324 TVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKK 383
+ + W EF W P S+ KG+ L + +
Sbjct: 813 STLSNWAYEFDKWAP--------SVVKVSYKGSPAARRAFVPQLRSGKF----------- 853
Query: 384 EKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNP 443
++++TTY + L +RW Y I+DEGH+++N
Sbjct: 854 ------------------------NVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNH 889
Query: 444 DSDISLTCK-QLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINM 502
++ R++L+GTP+QN L ELW+L +F+ P + F+Q F P M
Sbjct: 890 HCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAM 949
Query: 503 GGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSK 562
G ++ + L ++ P+LLRR+K +V LP+K E V+ C ++ Q+
Sbjct: 950 TG--EKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVL 1007
Query: 563 YLEF-----LHSDELMKIRKGK---RQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADY 614
Y L +D K +KGK + ++ I LRKICNHP + + +++
Sbjct: 1008 YRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTG 1067
Query: 615 GNPA------RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLK 668
G SGK +++ ++L + HK LLF Q ++ I++++ +Y+ K
Sbjct: 1068 GIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG-----FK 1122
Query: 669 FLRMDGTTNIGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPST 726
+LR+DGTT R L+ FN Y +FLL+TR GGLG+NL A+ +IIFD DWNP
Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
Query: 727 DMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK 774
D+QA++RA RIGQ+ EV + RL S+EEKI +K + K+++
Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 261 bits (667), Expect = 4e-69
Identities = 181/561 (32%), Positives = 273/561 (48%), Gaps = 77/561 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
+Q T V W+ L+ + GI+ DEMGLGKT+Q +AFL+ L HS + +GP LVV P + +
Sbjct: 378 FQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVP 437
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W W + MN + + +++ + Y D +K K
Sbjct: 438 AWQETLALW------------ASDMNCISYLGNTTSRQVIRDYEF----YVDGTQKIKF- 480
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
++++TTY + L N++W Y +DE H+++N +S +
Sbjct: 481 --------------------NLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSL 520
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
Q K NR++++GTP+QNN+ EL +L DF+ PGK + IN+
Sbjct: 521 YEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKF--------EIREEINLEAPDE 572
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
+++ L++ + PY+LRR+K DV K LP K+E +L +L+ Q Y L
Sbjct: 573 EQEAYIRS-------LQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNIL 625
Query: 568 HSDELM---KIRKGKRQVLYGIDI-LRKICNHPDLLDLKRK----KMNDYEDADY---GN 616
+ + I G + L I + L+K NHP L D + K+N D G
Sbjct: 626 TRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGL 685
Query: 617 PARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
SGKM ++ +LL GH+ L+F+Q +MLDIL +++S L R+DGT
Sbjct: 686 IMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLS-----LRGYPHQRLDGTV 740
Query: 677 NIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
R++ +D FN N P VFLL+TR GGLGINL A+ +IIFD DWNP D+QA RA
Sbjct: 741 PAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARA 800
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK---DPKQKRF----FKMNDL 787
RIGQK V +YRL+ +IEE + R K L I+ KQK F +L
Sbjct: 801 HRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEEL 860
Query: 788 HDLFTLGGDNGYETEEFNQEI 808
+ G N ++ E +++
Sbjct: 861 SAILKFGASNMFKAENNQKKL 881
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 261 bits (667), Expect = 4e-69
Identities = 189/655 (28%), Positives = 313/655 (46%), Gaps = 69/655 (10%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
LF +Q + WL + + I+ DEMGLGKT+ AFL++L+ + P LV+ P +
Sbjct: 675 LFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLVPLS 734
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
M W +EF W P V H G KG I DYE
Sbjct: 735 TMPNWLSEFSLWAPLLNVVEYH----GSAKGRAI------------------IRDYEWHA 772
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
K T + + K ++++TTY + S L V W ++DEGH+++N +
Sbjct: 773 KNSTGTTKKPTSYKF--------NVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSE 824
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S + Q+R++L+GTP+QNN+ E+++L +F+ P +L F+++F +
Sbjct: 825 SKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEERFHD------ 878
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
+A ++ L+ L++P++LRR+K D +++P K E ++ +LT Q Y
Sbjct: 879 LTSAEKVE---------ELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYR 929
Query: 565 EFLHSDE--LMKIRKGKRQ--VLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARS 620
L + L I KG Q +L + LRK+CNHP L+ + E S
Sbjct: 930 AMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLEFLHDMRIKAS 989
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
K+ ++ +L + H +GH+ L+F+Q ++LDIL+++++ E F R+DG+ +
Sbjct: 990 AKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNI---EFGPKTFERVDGSVAVAD 1046
Query: 681 RQSLVDKFNNEPYD-VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
RQ+ + +FN + VFLL+TR GLGINL A+ +II+D D+NP D+QA RA RIGQ
Sbjct: 1047 RQAAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQ 1106
Query: 740 KREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL-KDPKQKRFFKMN--DLHDLFT-LGG 795
+ + +YRL++ S+EE+I K L + K QK F + +LF G
Sbjct: 1107 SKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEFEDILRWGTEELFNDSAG 1166
Query: 796 DNGYETEEF--NQEIVKQTGNIKQNKTSETDDF--DKLSQISG------VHKLEGFFNSK 845
+N +T E N +++ + + K D DK ++ +G + ++ S
Sbjct: 1167 ENKKDTAESNGNLDVIMDLESKSRKKGGGLGDVYQDKCTEGNGKIVWDDIAIMKLLDRSN 1226
Query: 846 EQDEKQSTEDDRIMGSLFSSANSVDTNER--DDIIGAEATRNVKSALDALKNSRK 898
Q D + + S V+ NE ++ +GAE+ V + RK
Sbjct: 1227 LQSASTDAADTELDNDMLGSVKPVEWNEETAEEQVGAESPALVTDDTGEPSSERK 1281
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 261 bits (667), Expect = 4e-69
Identities = 168/520 (32%), Positives = 258/520 (49%), Gaps = 82/520 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + W+ LY+ G GI+ DEMGLGKT+Q I+ L L H + GP +V+ P + ++
Sbjct: 131 YQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQ 190
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NEF W P RAV L IG + T I + +LM +
Sbjct: 191 NWVNEFKKWCPSLRAVCL--IGDQDTRNTFIRD-----VLMPGEWD-------------- 229
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+ +T+Y W Y ++DE H+I+N S +
Sbjct: 230 ---------------------VCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKL 268
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
S ++ KT NR++++GTP+QNNL ELW+L +F+ P + F + F +G A
Sbjct: 269 SEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDAL 328
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
+ + ++ P+LLRR+K++V K L K EM +F L++ Q+ Y + L
Sbjct: 329 ITRLHA------------VLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVL 376
Query: 568 HSDELMKIRKGKRQVLYGIDIL---RKICNHPDLLDLKRKKMNDYEDADYGNPA------ 618
D + GK + + +IL RK NHP L D A+ G P
Sbjct: 377 LKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFD----------GAEPGPPYTTDTHL 426
Query: 619 --RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
SGKM ++ +LL QG + L+F+Q +MLDIL+++ +++ + R+DG T
Sbjct: 427 VYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRN-----YNYCRLDGQT 481
Query: 677 NIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
R + +FN N +F+L+TR GGLGINL A+ +II+D DWNP D+QA +RA
Sbjct: 482 PHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRA 541
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK 774
RIGQK++V ++RL+ ++EEKI R K L +++
Sbjct: 542 HRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQ 581
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 260 bits (665), Expect = 7e-69
Identities = 184/629 (29%), Positives = 299/629 (47%), Gaps = 83/629 (13%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQ + WL + G I+ DEMGLGKT+Q + FL TL GP L+ P +
Sbjct: 616 LHPYQLEGINWLRHCWSNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLS 675
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W E W P F V T + + E ++ F++ D
Sbjct: 676 TIINWEREAELWCPDFYVV------------TYVGDRESRMVIREHE---FSFVD----- 715
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
++ V K+ H+++T+Y + + L ++ W ++DE H+++N
Sbjct: 716 ---GAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQ 772
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S ++ Q R++L+GTP+QNNL EL+ L +F+ P + L F +F+
Sbjct: 773 STFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSE------ 826
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
+ I+ L +L+ P++LRR+K+DV +P K E+++ +L+ QK Y
Sbjct: 827 ISKEDQIE---------KLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYK 877
Query: 565 EFLHSD-ELMKIRKGKRQV--LYGIDILRKICNHPDL-----LDLKRKKMNDYEDADYGN 616
L + + + ++ G Q+ + I L+K CNHP L L+ + K YE +
Sbjct: 878 NILTRNFDALNVKNGGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIK 937
Query: 617 PARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
A GK +++++L GH+ L+F+Q MLDIL++F ++ K+ R+DG+
Sbjct: 938 NA--GKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFC-----DVEGYKYERIDGSI 990
Query: 677 NIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
RQ +D++N VFLL+TR GGLGINL A+ +II+D DWNP D+QA RA
Sbjct: 991 TGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 1050
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK---DPKQKRFFKMNDLHDLF 791
R+GQK +V IYR + GS+EE+I K L++ +++ K + +L D+
Sbjct: 1051 HRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDDVL 1110
Query: 792 TLGGDNGYETEEF----------------NQEIVKQTGNI----KQNKTSETDDFDKLSQ 831
G + ++ EE QEIV + +NK E D +K
Sbjct: 1111 RWGTEELFKEEEAPVEGADGEGTSSKKPNEQEIVWDDAAVDFLLDRNKEEEGQDGEKKEH 1170
Query: 832 ISGVHKLEGF----FNSKEQDEKQSTEDD 856
+ + L F +N+KE D+ ED+
Sbjct: 1171 WTNEY-LSSFKVATYNTKEADDADDDEDE 1198
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 259 bits (662), Expect = 2e-68
Identities = 175/525 (33%), Positives = 263/525 (49%), Gaps = 75/525 (14%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ V+WL L+Q G GI+ D+MGLGKTIQ I FL+ L L+GP LV+ P + +
Sbjct: 205 YQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLK-GNGLDGPYLVIAPLSTLS 263
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NE + P A+I H G + +EL + M G
Sbjct: 264 NWFNEIARFTPSINAIIYH--------GDKNQRDELRRKHMPKTVGP------------- 302
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTY-VGLRLHSEALLNVRWGYAILDEGHKIRNPDSD 446
I+IT+Y V + L + W Y ++DEGH+++N
Sbjct: 303 ------------------KFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCK 344
Query: 447 ISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+ K LK N+++L+GTP+QNNL+ELWSL +F+ P + F+ F A
Sbjct: 345 LLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEA 404
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+ K + L ++ P++LRR+K DV LP+K E++++ +T +QK K+ E
Sbjct: 405 TKEE-EEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQK-KFQEH 462
Query: 567 LHSDELMK------IR----KGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGN 616
L ++ L IR KGK L + LRK CNHPDLL D Y
Sbjct: 463 LVNNTLEAHLGENAIRGQGWKGKLNNL--VIQLRKNCNHPDLLQ-------GQIDGSYLY 513
Query: 617 P------ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFL 670
P + GK +++++LL+ + HK L+F+Q ++LDI+ + S K E+
Sbjct: 514 PPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVC----- 568
Query: 671 RMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDM 728
R+DG+ + R+ + F++E +FLL+TR GGLGINLT A+ I++D DWNP D+
Sbjct: 569 RIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDL 628
Query: 729 QARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL 773
QA +R RIGQ + V +YRL A SIE ++ R K L + ++
Sbjct: 629 QAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVI 673
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 258 bits (659), Expect = 3e-68
Identities = 182/614 (29%), Positives = 291/614 (46%), Gaps = 96/614 (15%)
Query: 197 VIRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDI----PEWLK----------- 241
+I +++DG Q L KW + ++N DI PE +K
Sbjct: 290 IIDSQRASLEDGTSQ--LQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKIL 347
Query: 242 ---------PHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEM 292
P+ ++ F+ G+ L +Q T + W+ L+ +G GI+ DEM
Sbjct: 348 PQYSSNYTSQRPRFEKLSVQPPFIKGGE----LRDFQLTGINWMAFLWSKGDNGILADEM 403
Query: 293 GLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGM 352
GLGKT+Q +AF++ L +R+ NGP ++V P + M W + F W P +
Sbjct: 404 GLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY------- 456
Query: 353 NKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIIT 412
M + T +YE R + +K++K ++++T
Sbjct: 457 ---------------MGNQKSRDTIREYEFYTNPRA--KGKKTMKF---------NVLLT 490
Query: 413 TYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLT 472
TY + L +++W + +DE H+++N +S + + K NR++++GTP+QNN+
Sbjct: 491 TYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIK 550
Query: 473 ELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLL 532
EL +L +F+ PG+ Q+ + N Q + + L I P++L
Sbjct: 551 ELAALVNFLMPGRF----TIDQEI-------DFENQDEEQEEYIHD----LHRRIQPFIL 595
Query: 533 RRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL---HSDELMKIRKGKRQVLYGIDIL 589
RR+K DV K LP K E +L +L+ Q Y L +S + G +L ++ L
Sbjct: 596 RRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNEL 655
Query: 590 RKICNHPDLLDLKRKKMNDY--------EDADYGNPARSGKMQVVKQLLLLWHSQGHKTL 641
+K NHP L D +++ E+ G SGKM ++ QLL GH+ L
Sbjct: 656 KKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVL 715
Query: 642 LFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLT 699
+F+Q +MLDIL +++S K + F R+DGT R+ +D FN+ + VFLL+
Sbjct: 716 IFSQMVRMLDILGDYLSIKG-----INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 770
Query: 700 TRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIY 759
TR GGLGINL A+ ++IFD DWNP D+QA RA RIGQK V +YRL+ ++EE++
Sbjct: 771 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 830
Query: 760 HRQIFKQFLSNKIL 773
R K L I+
Sbjct: 831 ERARKKMILEYAII 844
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 257 bits (656), Expect = 7e-68
Identities = 179/613 (29%), Positives = 286/613 (46%), Gaps = 94/613 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ ++WL LY GI+ DEMGLGKTIQ I+ + L +K+ GP L++ P + +
Sbjct: 776 YQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPLSTLP 835
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P ++G KG+ L+ + + +
Sbjct: 836 NWVLEFEKWAP--------AVGVVSYKGSPQGRRLLQNQMRATKF--------------- 872
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
++++TTY + L ++W Y I+DEGH+++N
Sbjct: 873 --------------------NVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHH--- 909
Query: 448 SLTCKQLKTQN-------RIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPI 500
CK + N R++L+GTP+QN L ELW+L +F+ P + F+Q F P
Sbjct: 910 ---CKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPF 966
Query: 501 NMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQK 560
G + + L ++ P+LLRR+K +V LP K E ++ C ++ Q+
Sbjct: 967 ATTG--EKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQR 1024
Query: 561 SKYLEF-----LHSDELMKIRKGK---RQVLYGIDILRKICNHPDLLDLKRKKMNDYEDA 612
Y L +D K + GK + ++ I LRK+CNHP + +K D+
Sbjct: 1025 VLYKHMQSKGVLLTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTGG 1084
Query: 613 D--YGNPAR---SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDL 667
P SGK +++ ++L + H+ LLF Q Q + I+++++ ++
Sbjct: 1085 HGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQ-----F 1139
Query: 668 KFLRMDGTTNIGSRQSLVDKFNNEPYDVF--LLTTRVGGLGINLTGANRIIIFDPDWNPS 725
+LR+DGTT R L+ KFN + DVF LL+TR GGLG+NL A+ ++IFD DWNP
Sbjct: 1140 GYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPH 1199
Query: 726 TDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMN 785
D+QA++RA RIGQ+ EV + RLM S+EE+I +K + K++ Q F
Sbjct: 1200 QDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVI----QAGMFDQK 1255
Query: 786 DLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSK 845
G E ++F Q I+ Q N ++ + D D++ + E K
Sbjct: 1256 ----------STGSERQQFLQTILHQDDNEEEEENEVPD--DEMINMMIARSEEEIEIFK 1303
Query: 846 EQDEKQSTEDDRI 858
D ++ ED+ I
Sbjct: 1304 RMDAERKKEDEEI 1316
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 255 bits (652), Expect = 2e-67
Identities = 202/649 (31%), Positives = 307/649 (47%), Gaps = 88/649 (13%)
Query: 240 LKPHPKISDANISEDFM-VPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTI 298
L+ PK DF+ G+ L YQ + W+ + +G I+ DEMGLGKTI
Sbjct: 379 LRKRPKFEKFESMPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTI 438
Query: 299 QIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQI 358
Q I+ LA+L H L GP LVV P + M W EF W P V+ G +
Sbjct: 439 QSISLLASLFHRYDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNLVVY--------MGDVV 490
Query: 359 PEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLR 418
+ M Y F KK K I+TTY L
Sbjct: 491 SRD------MIRQYEWFVGGT--KKMKINA---------------------ILTTYEILL 521
Query: 419 LHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLF 478
L ++ W ++DE H+++N +S + + Q + ++++++GTP+QN+L ELW+L
Sbjct: 522 KDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALL 581
Query: 479 DFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSD 538
F+ P K F+ N SN +K AL + P+LLRRVK D
Sbjct: 582 HFIMPEKFDCWEEFETAH----------NESN------HKGISALHKKLEPFLLRRVKKD 625
Query: 539 VAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYG----IDILRKICN 594
V K LP K E +L +T +QK Y +++ + ++ KG + + G + L+K CN
Sbjct: 626 VEKSLPPKTEQILRVDMTAHQKQFY-KWILTKNYRELSKGVKGSINGFVNLVMELKKCCN 684
Query: 595 HPDLLDLKRKKMNDYEDADYGNPAR----SGKMQVVKQLLLLWHSQGHKTLLFTQSRQML 650
H L R+ + Y+DA G + SGK+ ++ +LL +GH+ L+F+Q ML
Sbjct: 685 HASLT---RQYDHIYDDAQ-GRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMML 740
Query: 651 DILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGIN 708
DILQE++ +L R+DG+ R+ +D +N FLL+TR GGLGIN
Sbjct: 741 DILQEYL-----QLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGIN 795
Query: 709 LTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFL 768
L A+ +IIFD DWNP D+QA RA RIGQ + V IYRL+ GS+EE+I R K L
Sbjct: 796 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVL 855
Query: 769 SNKILK--DPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDF 826
+ +++ D K N T G ++ +E + + + G ++ K E ++
Sbjct: 856 DHLVIQRMDTTGKTVLSKN-----ATASGSVPFDKQELS--AILKFGAVELFKEKEGEEQ 908
Query: 827 DKLSQISGVHKLEGFFNSKEQDEKQSTEDDRIMGSLFSSANSVDTNERD 875
+ I + L G ++E +E+ E++ + S F AN E+D
Sbjct: 909 EPEVDIDRI--LMG-AETREAEEEVMKENELL--SSFKYANFAIDEEKD 952
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 255 bits (651), Expect = 3e-67
Identities = 201/662 (30%), Positives = 321/662 (48%), Gaps = 90/662 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ V WL Y I+ DEMGLGKT+Q I FL+ ++ ++GP LVV P + ++
Sbjct: 1190 YQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIY-DYGIHGPFLVVVPLSTIQ 1248
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF TW A++ H G+ E L++ Y F Y+K+
Sbjct: 1249 NWVREFETW-TDMNAIVYH--------GSAYAREVLQQ------YEVF----YDKRHC-- 1287
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
K+ KK K+ +ITT+ + E L + W ++DE H+++N + +
Sbjct: 1288 ----GAKNWKKNFVKI----DALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKL 1339
Query: 448 SLT-CKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+ + ++R++L+GTP+QNN+ EL+SL +F++P + F +QF G
Sbjct: 1340 LVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQF------GSCQ 1393
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+Q L++++ P +LRR+K DV K L K E ++ +L+ QK Y
Sbjct: 1394 TDDQVQ---------KLQEILKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAI 1444
Query: 567 LHSDELMKIRKGKRQVLYGIDI-LRKICNHPDLLD-LKRKKMNDYE----DADYGNPAR- 619
L + + L + + LRK CNHP L++ + MND+ D D A
Sbjct: 1445 LERNFSHLCKGTSAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHK 1504
Query: 620 -----SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEF-ISYKDPELSDLKFLRMD 673
SGK+ ++++LL GHK L+F+Q ++LD+L+EF IS P F R+D
Sbjct: 1505 ALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYP------FERID 1558
Query: 674 GTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQAR 731
G RQ+ +D+F+ E D VFLL TR GGLGINLT A+ +IIFD DWNP D+QA+
Sbjct: 1559 GNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQ 1618
Query: 732 ERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKD----PKQKRFFKMNDL 787
R RIGQK+ V +YRL+ + + E +++ + K L +L+ + D+
Sbjct: 1619 ARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTTALKAEGTALSKKDV 1678
Query: 788 HDLFTLGG-----DNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFF 842
+L G D E+ +FN+E + +T ++ +T + K S + + F
Sbjct: 1679 EELLKKGAYGSIMDEENESSKFNEEDI-ETILQRRTQTITLEAGQKGSLFA-----KATF 1732
Query: 843 NSKEQDEKQSTEDDRIMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQTKR 902
NS DD + ++ VD + A AT + + + ++ RK+TKR
Sbjct: 1733 NSSHNKGDDIDIDDPEFWTKWAEKAQVDVEK------ATATPDGRELI--IEEPRKRTKR 1784
Query: 903 FD 904
F+
Sbjct: 1785 FE 1786
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 252 bits (644), Expect = 2e-66
Identities = 188/571 (32%), Positives = 281/571 (48%), Gaps = 93/571 (16%)
Query: 265 LFPYQKTCVQWLCE----LYQQG-CGGIIGDEMGLGKTIQIIAFLATLHHSRKLNG-PV- 317
L P+QK + +L E + G CG I+ DEMGLGKT+Q I+ + TL G PV
Sbjct: 194 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 253
Query: 318 ---LVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
L+V P +++ W EF W R I T + ++E+ + + Y
Sbjct: 254 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIF----------TVDQDHKVEEFIKSIFYS- 302
Query: 375 FTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAIL 434
++I +Y L + + N+++ I
Sbjct: 303 ----------------------------------VLIISYEMLLRSLDQIKNIKFDLLIC 328
Query: 435 DEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQ 494
DEGH+++N + L + RIIL+GTPIQN+L E ++L DFV PG LG+L +++
Sbjct: 329 DEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRK 388
Query: 495 QFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCK 554
+ PI + +AS + + G + A L L ++LRR + + K LP K E V+FC+
Sbjct: 389 IYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCR 448
Query: 555 LTQYQKSKYLEFLHSDELMKIRKG---KRQVLYGIDILRKICNHPDLL--DLKRKKMNDY 609
Q Y + L+S + +G L I L+K+CNHP LL +K K+ +
Sbjct: 449 PGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSST 508
Query: 610 ED----------------ADYGNP-----ARSGKMQVVKQLLLLWHS--QGHKTLLFTQS 646
D ADY NP SGK+QV+ +LL + H K +L +
Sbjct: 509 CDKNEEKSLYKGLLSVFPADY-NPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNY 567
Query: 647 RQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNE--PYDVFLLTTRVGG 704
Q L+ILQE + + R+DG T I RQ +VD FN++ + +FLL+++ GG
Sbjct: 568 TQTLNILQEVC-----KRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGG 622
Query: 705 LGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIF 764
+G+NL G + +I++D DWNP+TD+QA R WR GQK V IYRL+ G+IEEKIY RQI
Sbjct: 623 VGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQIS 682
Query: 765 KQFLSNKILKDPKQKRF--FKMNDLHDLFTL 793
KQ L ++ K F + +L +LFTL
Sbjct: 683 KQGLCGAVVDLTKTSEHIQFSVEELKNLFTL 713
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 250 bits (639), Expect = 7e-66
Identities = 184/562 (32%), Positives = 279/562 (48%), Gaps = 78/562 (13%)
Query: 264 LLFPYQKTCVQWLCELY-------QQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGP 316
+L P+Q+ V++L E GC I+ DEMGLGKT+Q I + TL P
Sbjct: 152 VLRPHQREGVKFLWECVTSRRIPGSHGC--IMADEMGLGKTLQCITLMWTLLRQSPECKP 209
Query: 317 ----VLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNY 372
+VV P++++K W NE W + G+ ++E+++ L
Sbjct: 210 EIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGS---------KDEIDQKL----- 255
Query: 373 GTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYA 432
+ + R S I+I +Y RLH L G
Sbjct: 256 -----EGFMNQRGARVS-----------------SPILIISYETFRLHVGVLQKGSVGLV 293
Query: 433 ILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVF 492
I DEGH+++N ++ L T R+++SGTPIQN+L E +SL FV G LGT F
Sbjct: 294 ICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEF 353
Query: 493 QQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLF 552
++ F PI G A AS + G + L +++ L+RR ++K LP K E V+
Sbjct: 354 KKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVC 413
Query: 553 CKLTQYQKSKYLEFL-HSDELMKIRKGKRQV--LYGIDILRKICNHPDLLDLKRKKMNDY 609
C+LT Q Y FL + ++ +GK V L I L+K+CNHP L+ K +
Sbjct: 414 CRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALI---YDKCVEE 470
Query: 610 EDADYG--------------NPARSGKMQVVKQLLLLWHSQ-GHKTLLFTQSRQMLDILQ 654
ED G P SGKM V+ +L + S+ K +L + Q LD+ +
Sbjct: 471 EDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFE 530
Query: 655 EFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGA 712
+ + ++R+DGT +I R +V++FN + P VF+L+++ GG G+NL GA
Sbjct: 531 KLCRAR-----RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 713 NRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKI 772
NR+++FDPDWNP+ D QA R WR GQK+ IYRL+ AG+IEEKI+ RQ K+ LS+ +
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
Query: 773 LKDPKQ-KRFFKMNDLHDLFTL 793
+ + + +R F + +L +LF L
Sbjct: 646 VDEEQDVERHFSLGELKELFIL 667
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 250 bits (638), Expect = 9e-66
Identities = 159/516 (30%), Positives = 259/516 (49%), Gaps = 78/516 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL +++ I+ DEMGLGKT+Q IAFL + + +K L++ P + +
Sbjct: 56 YQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVKKERKRHLIILPKSTLA 115
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF + P ++ + +S
Sbjct: 116 NWRREFRKFMPNYKVRVFYS---------------------------------------- 135
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLN-VRWGYAILDEGHKIRNPDSD 446
SRK +++ E++++ T + +++ ++LN V+W Y ++DE H+I+N S
Sbjct: 136 ----SRKEMRREAEEIMSSRWDACLTTYEMCINARSILNTVKWSYIVIDEAHRIKNEHSL 191
Query: 447 ISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
+S + +R++++GTP+QNN+ ELW+L +F+ P F+ N G A
Sbjct: 192 LSKIVRIFSCDHRLLITGTPLQNNVHELWALLNFIVPEIFNDAEKFESYVMNIDEGDGEA 251
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+R ++ + LRR K DV LP K + L+ KL+ Q+ Y
Sbjct: 252 IRR-------------IRSVLQLFFLRREKIDVEMSLPPKKIVNLYSKLSPMQREWYRML 298
Query: 567 LHSD--ELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPAR----S 620
L D L R K ++ + LRK CNHP L D E Y N S
Sbjct: 299 LKRDLSPLGSTRDPKGMLMNVVMQLRKCCNHPYLFP-------DAEPKPYTNDKHIIENS 351
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GKM V+ +LL ++G + L+F+Q MLDIL+++ +++ E + R+DG+T+
Sbjct: 352 GKMIVLDKLLASLKAKGSRVLIFSQMSMMLDILEDYAMFREYE-----YCRIDGSTSYRD 406
Query: 681 RQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
R +D FN E + +FLLTTR GGLGINL+ A+ +I+FD DWNP D+QA++RA RIG
Sbjct: 407 RTEAIDGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIG 466
Query: 739 QKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK 774
QK++V ++RL+ ++EE+I +R + K L + +L+
Sbjct: 467 QKKQVVVFRLISENTVEERIVYRSLQKLKLDDILLQ 502
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 249 bits (635), Expect = 2e-65
Identities = 156/506 (30%), Positives = 256/506 (49%), Gaps = 72/506 (14%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQ--------IIAFLATLHHSRKLNGPVLV 319
YQ ++WL LY GI+ DEMGLGKT+Q +I+ + L ++ GP LV
Sbjct: 796 YQMNGLRWLVSLYNNHLNGILADEMGLGKTVQMGLGKTVQVISLICYLMETKNDRGPFLV 855
Query: 320 VCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYND 379
V P++V+ W +E + W P ++
Sbjct: 856 VVPSSVLPGWQSEINFWAPSIHKIVYCG-------------------------------- 883
Query: 380 YEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEA--LLNVRWGYAILDEG 437
T E RK K+ + V ++++TTY L + L + W Y I+DEG
Sbjct: 884 --------TPDERRKLFKEQI--VHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEG 933
Query: 438 HKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFA 497
H+I+N ++ K + +R++L+GTP+QNNL ELW+L +F+ P + F Q F
Sbjct: 934 HRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFN 993
Query: 498 NPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQ 557
P G ++A + + L ++ P++LRR+K V +LP+K E ++ C+ +
Sbjct: 994 KPFQSNGESSAL-LSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASA 1052
Query: 558 YQKSKYLEFLHSDELMKIRKGKRQVLYG-IDILRKICNHPDLLDLKRKKMNDYEDADYGN 616
YQK L D L I K + ++ + LR ICNHP L L + + +
Sbjct: 1053 YQK--LLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQL-------HSEEHFLP 1103
Query: 617 PA--RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDG 674
P GK++++ ++L + H+ L F+ ++LD+++++++ K K+LR+DG
Sbjct: 1104 PIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKG-----YKYLRLDG 1158
Query: 675 TTNIGSRQSLVDKFNNE--PYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARE 732
T+ G R +L+D FN P+ +FLL+ R GG+G+NL A+ +I+FD DWNP D+QA+
Sbjct: 1159 QTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1218
Query: 733 RAWRIGQKREVTIYRLMIAGSIEEKI 758
RA RIGQK++V + R S+EE++
Sbjct: 1219 RAHRIGQKKDVLVLRFETVNSVEEQV 1244
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 248 bits (632), Expect = 5e-65
Identities = 184/599 (30%), Positives = 297/599 (48%), Gaps = 75/599 (12%)
Query: 237 PEWLKPHPKISDANISEDFMVPGDIF-PLLFPYQKTCVQWLCELYQ-------QGCGGII 288
PE L H ++ + + +V + +L P+Q+ V+++ + GC I+
Sbjct: 173 PEHLSEHAQLKEDKDRKVHVVADPVVGKILRPHQRDGVKFMWDCVTGINIPEFHGC--IM 230
Query: 289 GDEMGLGKTIQIIAFLATLHHSRKLNGPV----LVVCPATVMKQWCNEFHTWWPPFRAVI 344
DEMGLGKT+Q I+ L TL P ++VCP++++K W E W
Sbjct: 231 ADEMGLGKTLQCISLLWTLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKW-------- 282
Query: 345 LHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVI 404
+G +N +P D K+E+ L S + K+ +
Sbjct: 283 ---LGTRLNA---MPV------------------DSGKREQIIACLNSFMADSKMRCAI- 317
Query: 405 TDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSG 464
++I +Y RL++ L + G I DEGH+++N ++ LK R+++SG
Sbjct: 318 ---PVLIISYETFRLYANILHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISG 374
Query: 465 TPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALR 524
TPIQN+L E +SL +FV PG LGT F+++F N I G A+AS+ K G + +
Sbjct: 375 TPIQNDLLEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSEDQKKGEEKTKEMI 434
Query: 525 DLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKI----RKGKR 580
L+ ++RR + + K LP K E ++ CK + Q++ Y + + ++ +I +
Sbjct: 435 SLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDKGATA 494
Query: 581 QVLYGIDILRKICNHPDLL-DLKRKKMNDYEDADYG-----------NPARSGKMQVVKQ 628
L I L+K+CNHP L+ D +K N + + +P+ SGKM+V+
Sbjct: 495 SALSFITHLKKLCNHPYLVYDEFQKPDNRFRNKCLSIFPESFNPKSFDPSFSGKMKVLDY 554
Query: 629 LLLLWH-SQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDK 687
+L + + K +L + Q +D E +L F+R+DG+ +I R +VD
Sbjct: 555 ILAVTRKTTDDKFVLVSNYTQTIDQFMELC-----KLRGYDFVRLDGSMSIKQRSKIVDT 609
Query: 688 FNNEPYDV--FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTI 745
FN+ + FLL+++ GG G+NL GANR+++FDPDWNP+ D QA R WR GQK+ I
Sbjct: 610 FNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFI 669
Query: 746 YRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQ-KRFFKMNDLHDLFTLGGDNGYETEE 803
YRL+ GSIEEK++ RQ K+ LS+ ++ + R F L +LF L +T E
Sbjct: 670 YRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQLRELFKLESTVASDTHE 728
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 246 bits (628), Expect = 1e-64
Identities = 164/545 (30%), Positives = 267/545 (48%), Gaps = 62/545 (11%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L P+Q V WL + QG I+ DEMGLGKTIQ + FL +L GP L+ P +
Sbjct: 267 LHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLS 326
Query: 325 VMKQWCNEFHTWWPPFRAV--ILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEK 382
+ W E W P V + + + +I EE+ M N + +N
Sbjct: 327 TLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFN---- 382
Query: 383 KEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRN 442
+++T+Y + + + L + W ++DE H++R+
Sbjct: 383 --------------------------VMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRS 416
Query: 443 PDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINM 502
S + + +++L+GTP+QNNL EL+ L +F+ GK L FQ +F +
Sbjct: 417 NQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDV--- 473
Query: 503 GGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSK 562
+ QVK L +++ P++LRR+K+DV K +P K+E ++ +L+ QK
Sbjct: 474 -----SKEEQVKR-------LHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKF 521
Query: 563 YLEFLHSDELMKIRKGKRQVLYGIDI---LRKICNHPDLLDLKRKKMNDYEDADYGNPA- 618
Y L + +KG +V ++I LRK CNHP L ++ Y +
Sbjct: 522 YKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSL 581
Query: 619 --RSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
SGK+ ++ ++L + H+ LLF+Q +ML++L+ F+ E ++ R+DG+
Sbjct: 582 TKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFL-----EGEGYQYDRIDGSI 636
Query: 677 NIGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
RQ +D+FN+ + VFLL+TR GGLGINL A+ +IIFD DWNP D+QA RA
Sbjct: 637 KGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRA 696
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPK--QKRFFKMNDLHDLFT 792
R+GQK++V IYR + S+EE+I K L++ +++ F ++L D+
Sbjct: 697 HRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILR 756
Query: 793 LGGDN 797
G ++
Sbjct: 757 FGTED 761
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 244 bits (622), Expect = 7e-64
Identities = 196/678 (28%), Positives = 308/678 (44%), Gaps = 131/678 (19%)
Query: 245 KISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFL 304
++ D + +D+ + ++ L YQ+ + WL L + GI+ D+MGLGKT+Q A +
Sbjct: 1424 QLLDNSHIDDYKLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIV 1483
Query: 305 ATLHHSRKLNG------PVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQI 358
A+ R+ + P ++VCP+T++ W E + +L +G+ ++ +
Sbjct: 1484 ASDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVS-- 1541
Query: 359 PEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLR 418
L + + ++IIT+Y +R
Sbjct: 1542 -----------------------------------------LREQFNNHNVIITSYDVVR 1560
Query: 419 LHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLF 478
+ L W Y ILDEGH I+N S I+ KQLK Q+R+ILSGTPIQNN+ ELWSLF
Sbjct: 1561 KDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLF 1620
Query: 479 DFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSD 538
DF+ PG LGT FQ + P+ S + G AL + P+LLRR K +
Sbjct: 1621 DFLMPGFLGTERQFQASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEE 1680
Query: 539 VAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKI-------------------RKGK 579
V DLP+K +C L+ Q Y +F S +I K
Sbjct: 1681 VLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKAS 1740
Query: 580 RQVLYGIDILRKICNHPDLLDLKRK-----------KMNDYED--ADYGNPARSGKMQVV 626
V + L K+C+HP LL L K +N D + S K+ +
Sbjct: 1741 THVFQALQYLLKLCSHP-LLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVAL 1799
Query: 627 KQLLL-------LWHSQG------HKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMD 673
+++L S G H+ L+F Q + +LDI+++ + + + ++R+D
Sbjct: 1800 QEILEECGIGSDASSSDGTLSVGQHRVLIFAQHKALLDIIEKDLF--QAHMKSVTYMRLD 1857
Query: 674 GTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTD----- 727
G+ R +V FN++P DV LLTT VGGLG+NLT A+ ++ + DWNP D
Sbjct: 1858 GSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFAN 1917
Query: 728 ------MQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK-DPKQKR 780
QA +RA R+GQKR V ++RL++ G++EEK+ Q FK ++N ++ + +
Sbjct: 1918 IELNKLWQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMK 1977
Query: 781 FFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHK-LE 839
+ L DLF + E K+ G K SE +D QI+G K ++
Sbjct: 1978 TMNTDQLLDLFA------------SAETSKKGGG-SSKKGSEDND-----QIAGTGKGMK 2019
Query: 840 GFFNSKEQ--DEKQSTED 855
+ E+ D+ Q TE+
Sbjct: 2020 AILGNLEELWDQSQYTEE 2037
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 243 bits (620), Expect = 1e-63
Identities = 192/729 (26%), Positives = 332/729 (45%), Gaps = 84/729 (11%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQ + WL + G I+ DEMGLGKT+Q + FL +L GP L+ P +
Sbjct: 602 LHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLS 661
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W E W P F V + + ++ E E + G K
Sbjct: 662 TIINWEREAEQWCPDFYVVTYVGL-----RDARVVLREHEFSFVE---GAVRSGPKASKM 713
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
KT +++ H+++T+Y + + L ++ WG ++DE H+++N
Sbjct: 714 KTTENMKF---------------HVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQ 758
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S + R++L+GTP+QNNL EL+ L +F+ + L F +F N I+
Sbjct: 759 SLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAEF-NEIS--- 814
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
Q++ L +L+ P++LRR+K+DV +P K+E+++ +L+ QK Y
Sbjct: 815 ----KEDQIEK-------LHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYK 863
Query: 565 EFLHSD-ELMKIRKGKRQV--LYGIDILRKICNHPDL-----LDLKRKKMNDYEDADYGN 616
L + + + ++ G Q+ + + L+K CNHP L L+ ++K YE
Sbjct: 864 NILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIK 923
Query: 617 PARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
SGK +++++L GH+ L+F+Q +MLDI+++ Y+ ++ R+DG+
Sbjct: 924 --NSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEG-----YRYERIDGSI 976
Query: 677 NIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
RQ +D++N +FLL+TR GGLGINL A+ +II+D DWNP D+QA RA
Sbjct: 977 MGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 1036
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK---DPKQKRFFKMNDLHDLF 791
R+GQK +V IYR + S+EEKI K L++ +++ K+ + +L D+
Sbjct: 1037 HRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTELDDVL 1096
Query: 792 TLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKEQDEKQ 851
G + E F++++ G + K + + + + V L N +E +
Sbjct: 1097 RWGTE-----ELFSEDLDAAEGEGSEKKGAAAQEI--VWDDAAVDALLDRSNKEETPAGE 1149
Query: 852 STEDDRIMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNSRKQ----------TK 901
E+ + + S+ V + + + G E ++ + +K K+
Sbjct: 1150 DGEEKAEWQNEYLSSFKVASYQTKETEGQEEEEEEET--EVIKEDEKEPDPDYWEKLLKH 1207
Query: 902 RFDVGTPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNR---DTLEREKIKRED----IQ 954
++ K G+ ++RK S N K N+ D + E + D +
Sbjct: 1208 HYEQDREIELQKLGKGKRVRKQINYASENMGTDWSKQNQTQDDDDDNESYRGSDNGDGLN 1267
Query: 955 SDATQKDEK 963
SD DEK
Sbjct: 1268 SDEDDYDEK 1276
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 240 bits (612), Expect = 9e-63
Identities = 199/711 (27%), Positives = 326/711 (44%), Gaps = 107/711 (15%)
Query: 180 FISDSE-ELLNESAGKLDVIRKPAEAIDDGDEH--HYQQRLKKWVANRSKDRDYDNQPDI 236
F+S+ E EL N ++D I A + DD E HY L KW + +D ++ + DI
Sbjct: 299 FLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTHY---LVKWCSLPYEDSTWERRQDI 355
Query: 237 PEW-LKPHPKISDANISEDFMV--PGDIFPL------------LFPYQKTCVQWLCELYQ 281
+ ++ K+ + + P D + L YQ V WL +
Sbjct: 356 DQAKIEEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWY 415
Query: 282 QGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFR 341
I+ DEMGLGKTIQ I FL ++ + ++GP LV+ P + + W EF TW
Sbjct: 416 NMRNCILADEMGLGKTIQSITFLYEIY-LKGIHGPFLVIAPLSTIPNWEREFRTW-TELN 473
Query: 342 AVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLE 401
V+ H G+Q ++ Y Y K + R S K
Sbjct: 474 VVVYH--------GSQASRRTIQ-----------LYEMYFKDPQGRVIKGSYKF------ 508
Query: 402 KVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRII 461
H IITT+ + L N+ W ++DE H+++N + + K + +++++
Sbjct: 509 ------HAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVL 562
Query: 462 LSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAV 521
L+GTP+QN + EL+SL F+ P + + F Q+F G +Q
Sbjct: 563 LTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF------GDLKTEEQVQ--------- 607
Query: 522 ALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKR- 580
L+ ++ P +LRR+K DV K+L K E ++ +LT QK Y L + + G +
Sbjct: 608 KLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQA 667
Query: 581 ---QVLYGIDILRKICNHPDLLDLKRKKM-------NDYEDADYGNPAR---SGKMQVVK 627
+L + LRK CNHP L++ +K+ ++ E D+ A +GK+ ++
Sbjct: 668 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLID 727
Query: 628 QLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDK 687
+LL + GH+ L+F+Q + LDIL++++ + + R+DG RQ+ +D+
Sbjct: 728 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRR-----YPYERIDGRVRGNLRQAAIDR 782
Query: 688 FNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTI 745
F+ D VFLL TR GGLGINLT A+ IIFD DWNP D+QA+ R RIGQ + V I
Sbjct: 783 FSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKI 842
Query: 746 YRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQK-------RFFKMNDLHDLFTLGG--- 795
YRL+ S E +++ + K L +L+ + + ++ DL G
Sbjct: 843 YRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGA 902
Query: 796 -----DNG--YETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLE 839
D G + E+ +Q ++++T I + F K S ++ ++ +
Sbjct: 903 LMDEEDEGSKFCEEDIDQILLRRTHTITIESEGKGSTFAKASFVASGNRTD 953
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 239 bits (609), Expect = 2e-62
Identities = 174/555 (31%), Positives = 267/555 (47%), Gaps = 109/555 (19%)
Query: 268 YQKTCVQWLCE--LYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATV 325
YQ + WL Y+Q C I+ DEMGLGKT+Q + F+ TL PVLVV P ++
Sbjct: 305 YQLEGLNWLLNRWYYKQSC--IMADEMGLGKTVQSVTFINTLFTKYDYCAPVLVVTPLSI 362
Query: 326 MKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEK 385
+ W EF W R + H N+ + E E +L +N
Sbjct: 363 IPHWEREFEAW-TDLRVLKYHE-----NRPGRALIAEYEFVLKKNN-------------- 402
Query: 386 TRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDS 445
LE + D ++ITTY + E L + I DE H+++N S
Sbjct: 403 --------------LEIRLFD--VLITTYDTVMAEQEHLSQFHFSVGIFDEAHRLKNAKS 446
Query: 446 DISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGY 505
+ + LK ++++LSGTP+QNN++ELWSL +F+ P + +LP F +F
Sbjct: 447 KAATILRTLKFNHKVLLSGTPLQNNISELWSLLNFIDPMRFSSLPHFLGEFK-------M 499
Query: 506 ANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLE 565
N ++++ L+ L+ P +LRR+K DV K +P K E ++ LT QK Y
Sbjct: 500 ENINDVE---------KLQGLLRPLMLRRMKEDVEKSIPTKEETIIEVALTMIQKRFYRA 550
Query: 566 FLHSDELMKIRKGKRQVLYGIDI---LRKICNHPDLLD----------LKRKK------- 605
L + + GK +++ LRK C HP L+ LK+K+
Sbjct: 551 ILEKNIEFLTKGGKESAPNLLNVMMELRKCCIHPYLIKGAEEQILSGYLKKKRERSKAEG 610
Query: 606 -----------MNDYEDADYGNPA-------------RSGKMQVVKQLLLLWHSQGHKTL 641
+N+ E D GN SGK+ ++ +LL GHK L
Sbjct: 611 AENDITLTSEVLNEDEHQD-GNSVISDIDEYYKIFIQSSGKLVLLDKLLGKL-KDGHKVL 668
Query: 642 LFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYDVF--LLT 699
+F+Q + LD+L E+++Y+ K+ R+DG +RQ+ +D+F+++ DVF LL+
Sbjct: 669 IFSQMTRCLDLLAEYLAYRK-----YKYERIDGGARTENRQAAIDRFSDKTSDVFVFLLS 723
Query: 700 TRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIY 759
TR GG+GINLT A+ +IIFD DWNP D+QA+ R RIGQ EV +YRL+ + E +++
Sbjct: 724 TRAGGVGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQTSEVKVYRLVTENTYEREMF 783
Query: 760 HRQIFKQFLSNKILK 774
+ K L +L+
Sbjct: 784 DKAGLKLGLDRAVLQ 798
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 237 bits (605), Expect = 6e-62
Identities = 164/511 (32%), Positives = 251/511 (49%), Gaps = 68/511 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ V WL + + G I+GDEMGLGKT Q IA L GP L++CP +V+
Sbjct: 49 YQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLS 108
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W E + P V AG + +++L++
Sbjct: 109 NWKEEMQRFAPGLSCVTY----AGDKEERACLQQDLKQ---------------------- 142
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
ESR H+++TTY + L + W ++DE H+++N S +
Sbjct: 143 ---ESRF-------------HVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLL 186
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPV--FQQQFANPINMGGY 505
T + ++L+GTPIQN+L EL+SL FV P V F Q++ +
Sbjct: 187 HKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGDFIQRYQD------- 239
Query: 506 ANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLE 565
++ + L L+ P+LLRRVK++VA +LPKK E+V++ ++ QK Y
Sbjct: 240 -------IEKESESGNELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKA 292
Query: 566 FLHSD-ELMKIRKGKRQVLYGI-DILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKM 623
L D + + K+ L I LRK +HP L D + +E D+ A SGK+
Sbjct: 293 ILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFD--GVEPEPFEVGDHLTEA-SGKL 349
Query: 624 QVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQS 683
++ +LL +S GH+ LLF+Q QMLDILQ+++ Y+ + R+DG+ R
Sbjct: 350 HLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRG-----YSYERVDGSVRGEERHL 404
Query: 684 LVDKFNNEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREV 743
+ F +P VFLL+TR GG+G+NLT A+ +I D D+NP D+QA RA RIGQ + V
Sbjct: 405 AIKNFGQQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSV 464
Query: 744 TIYRLMIAGSIEEKIYHRQIFKQFLSNKILK 774
+ RL+ ++EE +Y + K L+N I++
Sbjct: 465 KVIRLIGRDTVEEIVYRKAASKLQLTNMIIE 495
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 236 bits (601), Expect = 2e-61
Identities = 162/529 (30%), Positives = 265/529 (49%), Gaps = 71/529 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL + I+ DEMGLGKTIQ I FL+ + R ++GP L++ P + +
Sbjct: 462 YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIF-LRGIHGPFLIIAPLSTIT 520
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF TW A++ H G+QI + +++ M Y D + +
Sbjct: 521 NWEREFRTW-TEMNAIVYH--------GSQISRQMIQQYEMV-------YRDAQGNPLSG 564
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+ H++ITT+ + L + W I+DE H+++N + +
Sbjct: 565 ----------------VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKL 608
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
K + +++++L+GTP+QN++ EL+SL +F+ P + + F ++F +
Sbjct: 609 LEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDL-------- 660
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
+ QVK L+ ++ P +LRR+K DV K+L K E ++ +LT QK Y L
Sbjct: 661 KTEEQVKK-------LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAIL 713
Query: 568 HSDELMKIRKGKRQ-----VLYGIDILRKICNHPDLLD-LKRKKMNDYEDA------DYG 615
+ + KG Q ++ + LRK CNHP L++ + K + D+ D+
Sbjct: 714 EKN-FSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQ 772
Query: 616 NPAR---SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRM 672
A +GK+ ++ +LL + GHK L+F+Q + LDIL++++ + + R+
Sbjct: 773 LQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRR-----YTYERI 827
Query: 673 DGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQA 730
DG RQ+ +D+F D VFLL TR GGLGINLT A+ IIFD DWNP D+QA
Sbjct: 828 DGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQA 887
Query: 731 RERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQK 779
+ R RIGQ + V +YRL+ S E +++ + K L +L+D +K
Sbjct: 888 QARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRK 936
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 234 bits (597), Expect = 5e-61
Identities = 197/743 (26%), Positives = 334/743 (44%), Gaps = 111/743 (14%)
Query: 180 FISDSEELLNESAGKLDVIRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEW 239
F + EE N ++D I + +ID + L KW + +D ++ + D+ E
Sbjct: 83 FFHEDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEG 142
Query: 240 L--------KPHPKISDAN-----------ISEDFMVPGDIFPLLFPYQKTCVQWLCELY 280
HP++ N +S ++ L YQ V WL +
Sbjct: 143 KIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQ----LREYQLEGVNWLLFNW 198
Query: 281 QQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPF 340
I+ DEMGLGKTIQ IAFL +++ ++GP LV+ P + + W EF+TW
Sbjct: 199 YNRQNCILADEMGLGKTIQSIAFLQEVYNVG-IHGPFLVIAPLSTITNWEREFNTW-TEM 256
Query: 341 RAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLL 400
++ H G+ + +++ Y Y K + R + K
Sbjct: 257 NTIVYH--------GSLASRQMIQQ-----------YEMYCKDSRGRLIPGAYKF----- 292
Query: 401 EKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRI 460
+ITT+ + L + W I+DE H+++N + + + K + ++++
Sbjct: 293 -------DALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKV 345
Query: 461 ILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCA 520
+L+GTP+QN + EL+SL F+ P + + F + F G +Q
Sbjct: 346 LLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDF------GDLKTEEQVQ-------- 391
Query: 521 VALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKR 580
L+ ++ P +LRR+K DV K+L K E ++ +LT QK Y L + + KG
Sbjct: 392 -KLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKN-FSFLSKGAG 449
Query: 581 Q-----VLYGIDILRKICNHPDLLD-LKRKKMNDYEDADYGNP---------ARSGKMQV 625
+L + LRK CNHP L++ + K + ++ +A + P +GK+ +
Sbjct: 450 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVL 509
Query: 626 VKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLV 685
+ +LL + GHK L+F+Q + LDIL++++ + + R+DG RQ+ +
Sbjct: 510 IDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRR-----YLYERIDGRVRGNLRQAAI 564
Query: 686 DKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREV 743
D+F+ D VFLL TR GGLGINLT A+ IIFD DWNP D+QA+ R RIGQ + V
Sbjct: 565 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAV 624
Query: 744 TIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQK-------RFFKMNDLHDLFTLGG- 795
+YRL+ S E +++ + K L +L+ + + F ++ DL G
Sbjct: 625 KVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAY 684
Query: 796 -------DNG--YETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGFFNSKE 846
D G + E+ +Q ++++T I + F K S ++ ++ + +
Sbjct: 685 AAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPN 744
Query: 847 QDEKQSTEDDRIMGSLFSSANSV 869
+K + + D M L S N V
Sbjct: 745 FWQKWAKKADLDMDLLNSKNNLV 767
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 229 bits (585), Expect = 1e-59
Identities = 199/672 (29%), Positives = 290/672 (42%), Gaps = 130/672 (19%)
Query: 253 EDFMVPGDIFPLLFPYQKTCVQWLCELYQQ----------GCGGIIGDEMGLGKTIQIIA 302
E VP I L +Q T ++++ E Q G G I+ MGLGKT Q+IA
Sbjct: 675 EAVRVPRSISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIA 734
Query: 303 FLATLHHSRKLN-GPVLVVCPATVMKQWCNEFHTWWP----PFRAVILHSIGAGMNKGTQ 357
FL T L L+V P V+ W +EF W P P R +L +
Sbjct: 735 FLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRF--- 791
Query: 358 IPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKL-----LEKVITDGHIIIT 412
+ L K Y ++ +L + VK L + + DG I+
Sbjct: 792 ---DLLTKWRKKGGVFLMGYTNFR-------NLSLGRGVKDLNAARGICNALRDGPDIL- 840
Query: 413 TYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLT 472
+ DE H I+N +D + KQ+K Q RI L+G+P+QNNL
Sbjct: 841 --------------------VCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLM 880
Query: 473 ELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLL 532
E + + DFV G LG+ P F+ +F NPI G + N++ VK + + L + + ++
Sbjct: 881 EYYCMVDFVREGFLGSSPEFRNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQ 940
Query: 533 RRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLH--------SDELMKIRKGKRQVLY 584
R + V KDLP K V+ KL+ Q+ Y FL +DE M+ +
Sbjct: 941 RMDMNVVKKDLPPKTVFVISVKLSPLQRILYQRFLELYGFSDGRTDERMR-----KNFFA 995
Query: 585 GIDILRKICNHPDLLDL----------------------------------KRKKMNDYE 610
+L +I NHP + L K++ MND +
Sbjct: 996 AYQVLAQILNHPGIPQLRSEDSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQ 1055
Query: 611 DA-----------------DYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDIL 653
D +Y SGKM ++ +L + G K L+F+QS LD++
Sbjct: 1056 DKVDGYLQKDWWVDLLQKNNYKVSDFSGKMILLLDILSMSADVGDKALVFSQSIPTLDLI 1115
Query: 654 QEFISYKDPELSDLKF-------LRMDGTTNIGSRQSLVDKFN---NEPYDVFLLTTRVG 703
+ ++S KF R+DG T RQ LVD+FN N+ L++TR G
Sbjct: 1116 ELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAG 1175
Query: 704 GLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQI 763
LGINL ANR+II D WNP+ D+QA RAWR GQK+ V YRLM G+IEEKIY RQ+
Sbjct: 1176 SLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQV 1235
Query: 764 FKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSET 823
K+ L+ +++ + R ++ LF D+ E E EI KQ N +
Sbjct: 1236 TKEGLAARVVDRQQVHRTISKEEMLHLFEFDDDD--EKSEAVTEISKQNEAGHSNLVEQA 1293
Query: 824 DDFDKLSQISGV 835
+ K + +S V
Sbjct: 1294 ILWTKKATLSRV 1305
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 229 bits (583), Expect = 2e-59
Identities = 173/575 (30%), Positives = 282/575 (48%), Gaps = 81/575 (14%)
Query: 244 PKISDANISEDFMVPGDIFPLLFPYQKTCVQWL--CELYQQG-CG--GIIGDEMGLGKTI 298
PK D D ++ + L+ +Q+ V +L C L +G CG I+ DEMGLGKT+
Sbjct: 141 PKTWDPRTHVDVVIDPFLSKHLYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTL 200
Query: 299 QIIAFLATL-------HHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAG 351
Q I + TL + S +N +VV P T++K W NEF+ W R + + A
Sbjct: 201 QTITVVWTLLKQSYYANRSSTINN-AMVVAPVTLLKNWENEFYNWLGHERIHVYIARCA- 258
Query: 352 MNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIII 411
E+ ++ Y +I G+ +
Sbjct: 259 ---------EDFQEFTSNKTYS-----------------------------IIITGYETV 280
Query: 412 TTYV---GLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQ 468
TY+ G + + L I DE H++++ S +T +LKT+ R++L+GTP+Q
Sbjct: 281 CTYLRNYGCGIDIDLL--------ICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQ 332
Query: 469 NNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLIS 528
N+L+E +S+ +F+ PG LGT F+ Q+ PI NAS+ + G L + S
Sbjct: 333 NDLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTS 392
Query: 529 PYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDI 588
+ LRR + +AK LP + ++VLF K T Q++ Y L + +KG L +
Sbjct: 393 NFTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGFKSSVDQKG--YYLKILTR 450
Query: 589 LRKICNHPDLLDLKRKKMNDYEDAD------YGNPARSGKMQVVKQLLLLWHSQGHKTLL 642
L KICN LL +++ E D S K+Q++ LL + K ++
Sbjct: 451 LSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILAALLKSFQRGCQKAVI 510
Query: 643 FTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNN---EPYDVFLLT 699
+Q ++ L++++ F+S + ++F ++ G+T R +V FN + + V LL+
Sbjct: 511 VSQYKETLELIELFLS-----ILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLS 565
Query: 700 TRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIY 759
++ GG G+NLTG+ R+II++P WNP+ D+QA R +R GQKR V IY + +G ++E+I+
Sbjct: 566 SKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIF 625
Query: 760 HRQIFKQFLSNKIL-KDPKQKR-FFKMNDLHDLFT 792
RQ KQ LS+ + D QK+ FF D+ LF+
Sbjct: 626 IRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFS 660
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 228 bits (581), Expect = 4e-59
Identities = 166/544 (30%), Positives = 257/544 (46%), Gaps = 103/544 (18%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQK + WL +++ G GI+ DEMGLGKTIQ IAFLA L+ NGP L+V PA+
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W E + W P + + Y E+++
Sbjct: 556 TIDNWLREVNLWCPTLKVLCY-------------------------------YGSQEERK 584
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTY---VGLRLHSEALLNVRWGYAILDEGHKIR 441
+ R ++ SR D ++I+TTY + ++ YAI DEGH ++
Sbjct: 585 QIRFNIHSRYE----------DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLK 634
Query: 442 NPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGT-LPVFQQQFANPI 500
N S + NR++L+GTP+QNNL EL SL +FV P + ++ F++
Sbjct: 635 NMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKT 694
Query: 501 NMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQK 560
A+ +I K A + +I P++LRRVK +V K LP K + + C +++ Q+
Sbjct: 695 KS---ADEQSIYEKERIAHA---KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQE 748
Query: 561 SKYLEFLHS---------------DELMKIRKGKRQVL-----YGIDILRKICN------ 594
YL + + +M++RK L Y + L+++
Sbjct: 749 QLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEP 808
Query: 595 -----HPDLLDLKRKKMNDYE--------------DADYGNPARSGKMQVVKQLLLLWHS 635
+PDL+ + M D+E D SGK +V+ +L
Sbjct: 809 THCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQ 868
Query: 636 QGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNE-PYD 694
+G + +LF+Q MLDIL+ + + ++LR+DG T I R L+D+FN +
Sbjct: 869 KGDRVVLFSQFTMMLDILEVLLKHHQH-----RYLRLDGKTQISERIHLIDEFNTDMDIF 923
Query: 695 VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSI 754
VFLL+T+ GGLGINLT AN +I+ D D NP D QA +R R+GQ +EV + +L+ G+I
Sbjct: 924 VFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTI 983
Query: 755 EEKI 758
EE +
Sbjct: 984 EESM 987
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 227 bits (578), Expect = 8e-59
Identities = 156/502 (31%), Positives = 244/502 (48%), Gaps = 81/502 (16%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ +QW+ LY GI+ DEMGLGKT+Q++A +A L + GP L++ P V+
Sbjct: 37 YQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 96
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W +E HTW P + Y + R
Sbjct: 97 NWKSELHTWLPSVSCIY-----------------------------------YVGTKDQR 121
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+ L S+ +K ++++TTY + L V W Y I+DE ++++ +S +
Sbjct: 122 SKLFSQVKFEKF--------NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 173
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA- 506
+ + + Q R++L+GTP+QN+L ELWSL + + P F FA P G A
Sbjct: 174 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAH 233
Query: 507 NASNIQVKTGYKCAV--ALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKY- 563
N + ++T K V L ++ P++LRR DV LP K +VL C+++ Q + Y
Sbjct: 234 NIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYD 293
Query: 564 -------LEFLHSDELMKIRKGKRQVLYGIDI----------LRKICNHPDLLDLKRKKM 606
L DE ++ +K +Y I LRK CNHP L
Sbjct: 294 WIKATGTLRVDPDDEKLRAQKNP---IYQAKIYRTLNNRCMELRKACNHP---LLNYPYF 347
Query: 607 NDYEDADYGNPARS-GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELS 665
ND+ D+ RS GK+ ++ ++L+ GH+ LLF+ ++LDIL+E++ ++
Sbjct: 348 NDF-SKDF--LVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----- 399
Query: 666 DLKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWN 723
L + R+DGTT++ R+S + FN+ D +FLL+ R G G+NL A+ ++I+DPD N
Sbjct: 400 RLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPN 459
Query: 724 PSTDMQARERAWRIGQKREVTI 745
P + QA RA RIGQ REV +
Sbjct: 460 PKNEEQAVARAHRIGQTREVKV 481
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 226 bits (577), Expect = 1e-58
Identities = 170/612 (27%), Positives = 270/612 (43%), Gaps = 130/612 (21%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL LY+ G GI+ DE + GP +V+ P + +
Sbjct: 186 YQIRGLNWLISLYENGVNGILADE---------------------IPGPHMVLVPKSTLH 224
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W NEF W P R + +G + I +E +
Sbjct: 225 NWMNEFKRWVPSLRVICF--VGDKDARAAFIRDEMMPG---------------------- 260
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
+ + +T+Y + W Y ++DE H+I+N S +
Sbjct: 261 ------------------EWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKL 302
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
S ++ K+ NR++L+GTP+QNNL ELW+L +F+ P + F F +G
Sbjct: 303 SEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ-- 360
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
K L ++ P+LLRR+K+DV K LP K E+ ++ L++ Q+ Y + L
Sbjct: 361 ----------KLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKIL 410
Query: 568 HSDELMKIRKGKRQVLYGIDIL---RKICNHPDLLDLKRKKMNDYEDADYGNP------- 617
D + GK + ++IL RK CNHP L D A+ G P
Sbjct: 411 MKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFD----------GAEPGPPYTTDEHI 460
Query: 618 -ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
+ SGKM V+ +LL QG + L+F+Q ++LDIL+++ ++ E + R+DG T
Sbjct: 461 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYE-----YCRLDGQT 515
Query: 677 N-------------IGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPD 721
+G R++ ++ FN N +F+L+TR GGLGINL A+ +I++D D
Sbjct: 516 PHEEREDKFLEVEFLGQREA-IEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSD 574
Query: 722 WNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRF 781
WNP D+QA +RA RIGQK+ V ++RL+ ++EE+I R K L + ++ +Q R
Sbjct: 575 WNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRL 631
Query: 782 FKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKLEGF 841
N EE Q I ++ +K SE D D + + K
Sbjct: 632 IDQQ----------SNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAE 681
Query: 842 FNSKEQDEKQST 853
N + Q +S+
Sbjct: 682 MNERLQKMGESS 693
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 223 bits (569), Expect = 9e-58
Identities = 207/727 (28%), Positives = 326/727 (44%), Gaps = 141/727 (19%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIG-DEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPA 323
L P+Q V WL + Y G ++ D+MGLGKT+Q I+FL+ L + L GP LV+CP
Sbjct: 51 LKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPL 110
Query: 324 TVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKK 383
+V W +E + + P +L +G +
Sbjct: 111 SVTDGWVSEINRFTPNLE--VLRYVGDKYCR----------------------------- 139
Query: 384 EKTRTSLESRKSVKKLLEKVITDGH-----IIITTYVGLRLHSEALLNVRWGYAILDEGH 438
L+ RKS+ GH +++TTY + + L + W YAI+DE
Sbjct: 140 ------LDMRKSM-------YDHGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQ 186
Query: 439 KIRNPDSDI-SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFA 497
+++NP+S + ++ +Q R++++GTPIQNNLTELW+L F P GTL F F
Sbjct: 187 RLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFK 246
Query: 498 NPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKD----LPKKNEMVLFC 553
G + SN K YK +L+ ++ ++LRR KS + + LP E+ +
Sbjct: 247 ET---GDGLDVSND--KETYK---SLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMV 298
Query: 554 KLTQYQKSKYLEFLHSD--ELMKIRKG--KRQVLYGIDI-LRKICNHPDLLDLKRKKMND 608
L QK Y L + L+++ G L I I LRK C+HP L +
Sbjct: 299 PLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFP--GIEPEP 356
Query: 609 YEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLK 668
+E+ ++ A SGK+ V+ QLL H GH+ LLF+Q LDILQ+F+ EL
Sbjct: 357 FEEGEHLVQA-SGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFM-----ELRRYS 410
Query: 669 FLRMDGTTNIGSRQSLVDKFNNEPYD------------VFLLTTRVGGLGINLTGANRII 716
+ R+DG+ R + + F+ + VF+++TR GG+G+NL A+ +I
Sbjct: 411 YERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVI 470
Query: 717 IFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDP 776
++ DWNP D QA +RA RIGQ V L+ S+EE I R K LS+ ++ D
Sbjct: 471 FYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDN 530
Query: 777 KQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVH 836
+++ DL L + G ++ EE + E E+D+ K+ +IS +
Sbjct: 531 MEEKEEDGGDLRSL--VFGLQRFDPEEIHNE--------------ESDNL-KMVEISSLA 573
Query: 837 KLEGFFNSKEQDEKQSTEDDRIMGSLFSSANSVDTNERDDIIGAEATRNVKSALDALKNS 896
+ K +Q+ E D+ + N D ++G ++ ++ S LD
Sbjct: 574 E-------KVVAIRQNVEPDK-------EERRFEINSSDTLLGNTSSASLDSELD----- 614
Query: 897 RKQTKRFDVGTPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNRDTLEREKIKREDIQSD 956
+ +W K A A S+ D K NR L E+ R I++
Sbjct: 615 -------EASYLSWVEKLKEA--------ARSSKDEKIIELGNRKNLSEERNLR--IEAA 657
Query: 957 ATQKDEK 963
+ +EK
Sbjct: 658 RKKAEEK 664
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 220 bits (561), Expect = 8e-57
Identities = 166/552 (30%), Positives = 257/552 (46%), Gaps = 75/552 (13%)
Query: 285 GGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPV----------------LVVCPATVMKQ 328
G ++ D+MGLGKT+ I + TL V LVVCP T++
Sbjct: 341 GCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGN 400
Query: 329 WCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRT 388
W EF W L S G T + +R
Sbjct: 401 WKREFGKW------------------------------LNLSRIGVLTLS-------SRN 423
Query: 389 SLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRW--GYAILDEGHKIRNPDSD 446
S + K + KV ++I Y L SE L + + DEGH+++N S
Sbjct: 424 SPDMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASK 483
Query: 447 ISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMG-GY 505
I T K L + +++L+GTPIQN+L E +++ DF+ PG LG+ F+++F PI
Sbjct: 484 ILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDT 543
Query: 506 ANASNIQV-KTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
AN N ++ + G + + + ++ ++LRR + + K LP K +++LFCK Q +
Sbjct: 544 ANRYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFK 603
Query: 565 EFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLK---RKKMNDYEDAD-YGNPARS 620
+ L L + L I +L+K+CN P L+ + + D + D Y S
Sbjct: 604 DILQGARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNS 663
Query: 621 GKMQVVKQLLL-LWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
GK++V+ LL + K ++ + Q LDI++ ++ ++ + R+DG+
Sbjct: 664 GKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMN-----MAGMSHCRLDGSIPAK 718
Query: 680 SRQSLVDKFNNEPYDV-FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
R S+V FN P FLL+ + GG+G+NL G +R+I+FD DWNPS D+QA R R G
Sbjct: 719 QRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDG 778
Query: 739 QKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKR-------FFKMNDLHDLF 791
QK+ IYRL+ G I+EKI RQ+ K LS K L D + + F DL DLF
Sbjct: 779 QKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLF 838
Query: 792 TLGGDNGYETEE 803
++ D T +
Sbjct: 839 SVHTDTKSNTHD 850
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 219 bits (558), Expect = 2e-56
Identities = 220/839 (26%), Positives = 366/839 (43%), Gaps = 181/839 (21%)
Query: 235 DIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGL 294
D P+++ PK +++ L YQ V WL LYQQ GI+ DEMGL
Sbjct: 532 DFPKFVTEQPKTLASDVQ------------LKSYQLVGVNWLHLLYQQKLSGILADEMGL 579
Query: 295 GKTIQIIAFLATL----HHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGA 350
GKT Q++AF A L HH GP LVV P++ ++ W E + P R
Sbjct: 580 GKTCQVVAFFALLLEQGHH-----GPHLVVVPSSTLENWLRELARFCPSLR--------- 625
Query: 351 GMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHII 410
+ YG S + R ++++ +E+ I+
Sbjct: 626 -----------------VEPYYG---------------SQQERANIREAIEENEIKYDIL 653
Query: 411 ITTYVGLRLHSEA---LLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPI 467
+TTY + E L + + + DEGH ++N S+ L R++L+GTP+
Sbjct: 654 VTTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPL 713
Query: 468 QNNLTELWSLFDFVYPGKLGT----LPVFQQQFANPINMGGYANASNIQVKTGYKCAVAL 523
QNNL EL SL F+ P + L V + A P A+A Q +
Sbjct: 714 QNNLKELVSLLAFILPNMFDSDMDDLDVIFK--AKPT-----ADADIEQALLSKQRISRA 766
Query: 524 RDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQ-- 581
+ +++P++LRR K+ V DLPKK +++ CKL++ Q Y + + ++R+ ++
Sbjct: 767 KTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNK 826
Query: 582 --------------VLYGIDILRKICNHPDLL-----DLKRKKMND-------------- 608
+ + LRK NH L D K K+M
Sbjct: 827 RSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQ 886
Query: 609 --YEDADYGNPAR-----------------------SGKMQVVKQLLLLWHSQGHKTLLF 643
YED + + SGK++V+K+LL +G + LLF
Sbjct: 887 YIYEDMEVMSDFELHRLCRSFPTLQSYTLKDDPWMDSGKIRVLKELLPKMKEEGSRILLF 946
Query: 644 TQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRV 702
+Q QMLDIL++ + + + ++R+DG+T + RQ ++D+F+ E VFLL+T+
Sbjct: 947 SQFTQMLDILEQVL-----DTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKA 1001
Query: 703 GGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQ 762
GG GINL AN +I++D +NP D+QA +RA R+GQ REVT+ RL+ +IEE I
Sbjct: 1002 GGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYI---- 1057
Query: 763 IFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSE 822
++ + K+ D +L D G + EE + +V+ + ++N +
Sbjct: 1058 --QKLANTKLALD---------------MSLSSD-GKDREEIGERLVQDMLD-EENNGNN 1098
Query: 823 TDDFDKLSQISGVHKLEGFFNSKEQDEKQSTEDDRIMGSLFSSANSVDTNERDDIIGAEA 882
T ++ G K+ NSK+ D +++ + G S NSV E+ D+ +
Sbjct: 1099 TKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPLEG---SQPNSV---EKTDLADGDE 1152
Query: 883 TRNVKSAL--DALKNSRKQTKRFDVGTPTWTGKFGRAGKIRKSRTALSTNDSKFARKLNR 940
N+K+ + + ++ K+ + G T A KS T N+S + L+
Sbjct: 1153 KANIKTEMKSETVEGDNKELRETMKGENVQTDS-NAAVPSSKSSTE-EPNESVLSGHLDL 1210
Query: 941 DTLEREKIK--REDIQSDATQKDEKSAEVLKASIEKYLSQSPGFASKSADLVIRVGLQL 997
DT + + + D + +E+ + A+I+ L + SK D++ +V L +
Sbjct: 1211 DTEASPVVSTIEKTTKGDVSVTEEQQS----ANIDGQLEKPEIEESKKPDVLNQVSLSI 1265
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 218 bits (556), Expect = 3e-56
Identities = 172/560 (30%), Positives = 270/560 (47%), Gaps = 124/560 (22%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL LY+ GI+ DEMGLGKT Q IAF + L + +NGP LV+ PA+ M+
Sbjct: 390 YQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLM-DKNINGPHLVIAPASTME 448
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF + P + + + G+Q+ EE+ + + N +YN
Sbjct: 449 NWLREFAKFCPKLKIELYY--------GSQVEREEIRERI---NSNKDSYN--------- 488
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEA----LLNVRWGYAILDEGHKIRNP 443
+++TTY L S+A L N ++ + DEGH ++N
Sbjct: 489 ---------------------VMLTTY-RLAATSKADRLFLRNQKFNVCVYDEGHYLKNR 526
Query: 444 DSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGK----LGTLPVFQQQFANP 499
S+ + R++L+GTP+QNNL EL SL F+ P L +L V +P
Sbjct: 527 ASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSP 586
Query: 500 INMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQ 559
+ A S +V + +++P++LRR KS V LPKK ++ FC+ ++ +
Sbjct: 587 ESDFERALLSEQRVSRA-------KMMMAPFVLRRKKSQVLDALPKKTRIIEFCEFSEEE 639
Query: 560 KSKYLEF--------LHSDELMK--------IRKGKRQVLYGIDILRKICNHPDLL---- 599
+ +Y +F L + +MK + K K + + LRK+ +HP L
Sbjct: 640 RRRYDDFASKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVLVQLRKLADHPMLFRIHY 699
Query: 600 --DLKR------------KKMND---YEDADYGNPAR----------------------- 619
D+ R KK N+ +ED Y +
Sbjct: 700 KDDILRQMAKAIMNEPQYKKANELYIFEDMQYMSDIELHNLCCKFPSINSFQLKDEPWMD 759
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
+ K++ +K+LL G + +LF+Q Q+LDILQ + + +LKFLR DG+T +
Sbjct: 760 ATKVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVM-----KSLNLKFLRFDGSTQVD 814
Query: 680 SRQSLVDKFN-NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
RQ L+D+F +E +VFLL+T+ GG GINL AN +I++D +NP D+QA +RA R+G
Sbjct: 815 FRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVG 874
Query: 739 QKREVTIYRLMIAGSIEEKI 758
QK+EVT+Y+ ++ +IEE I
Sbjct: 875 QKKEVTVYKFVVKDTIEEHI 894
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 216 bits (551), Expect = 1e-55
Identities = 179/669 (26%), Positives = 288/669 (42%), Gaps = 127/669 (18%)
Query: 256 MVPGDIFPLLFPYQKTCVQWLCELYQ--------QGCGGIIGDEMGLGKTIQIIAFLATL 307
MV + L P+Q+ VQ++ + GC I+ D+MGLGKT+Q I L TL
Sbjct: 67 MVHSVLVKFLRPHQREGVQFMFDCVSGLHGSANINGC--ILADDMGLGKTLQSITLLYTL 124
Query: 308 ----HHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEEL 363
+ ++V P +++ W E W +G + +
Sbjct: 125 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKW-----------VG-----------DRI 162
Query: 364 EKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEA 423
+ + + + + + + R++L+ ++I +Y R+HS
Sbjct: 163 QLIALCESTRDDVLSGIDSFTRPRSALQ-----------------VLIISYETFRMHSSK 205
Query: 424 LLNVR-WGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVY 482
I DE H+++N + + L + R++LSGTP+QN+L E +++ +F
Sbjct: 206 FCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTN 265
Query: 483 PGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKD 542
PG LG F+ + PI G A+ + + L ++ ++LRR + ++
Sbjct: 266 PGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNH 325
Query: 543 LPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKI---RKGKRQVLYGIDILRKICNHPDLL 599
LP K V+ CK+T Q + Y F+ S L + + +VL I L+K+CNHP L+
Sbjct: 326 LPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNHPKLI 385
Query: 600 DLKRKKMND----YEDADYGNPAR-------------------SGKMQVVKQLLL-LWHS 635
K N +E+ PA SGKM V+ +LL L
Sbjct: 386 YDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGKMHVLSRLLANLRRK 445
Query: 636 QGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD- 694
+ +L + Q LD+ + + FLR+DG+T I RQ LV++ N+ D
Sbjct: 446 TDDRIVLVSNYTQTLDLFAQLCRERR-----YPFLRLDGSTTISKRQKLVNRLNDPTKDE 500
Query: 695 -VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGS 753
FLL+++ GG G+NL GANR+++FDPDWNP+ D QA R WR GQK+ V +YR + G+
Sbjct: 501 FAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGT 560
Query: 754 IEEKIYHRQIFKQFLSNKILKDPKQKR----------FFKMNDLHDLFTLGGDNGYETEE 803
IEEK+Y RQ+ K+ L I + +ND H NG
Sbjct: 561 IEEKVYQRQMSKEGLQKVIQHEQTDNSTRQVLAGMLYASSINDTH-------SNGLSQSL 613
Query: 804 FNQEIVKQ-----------------TGNIKQNKTSETDD----FDKLSQISGVHKLEGFF 842
F+ + + T NI++ + DD D+ I G K G F
Sbjct: 614 FSGNVARSEIHEKMSCSRCQNDASGTENIEEGNENNVDDNACQIDQ-EDIGGFAKDAGCF 672
Query: 843 NSKEQDEKQ 851
N + E+Q
Sbjct: 673 NLLKNSERQ 681
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 216 bits (551), Expect = 1e-55
Identities = 178/601 (29%), Positives = 271/601 (44%), Gaps = 133/601 (22%)
Query: 246 ISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGC-GGIIGDEMGLGKTIQIIAFL 304
I DA +ED D P+L PYQ V +L LY++G G I+ DEMGLGKTIQ I +L
Sbjct: 198 IDDACKAED----SDFQPILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYL 253
Query: 305 ATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELE 364
L GP LVVCPA+V++ W E W P F + H EL
Sbjct: 254 TLLSRLNNDPGPHLVVCPASVLENWERELRKWCPSFTVLQYHGAARAAYS------RELN 307
Query: 365 KMLMTSNYGTFT-----YNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRL 419
+ F Y+ +E+ E +K +K+L++
Sbjct: 308 SLSKAGKPPPFNVLLVCYSLFERHS------EQQKDDRKVLKRW---------------- 345
Query: 420 HSEALLNVRWGYAILDEGHKIRNPDSDI--SLTCKQLKTQNRIILSGTPIQNNLTELWSL 477
RW ++DE H +++ +S +L R++L+GTP+QN+L ELWSL
Sbjct: 346 --------RWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSL 397
Query: 478 FDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKS 537
+F+ P T +++ NA + ++ T ++ ++ P++LRR+KS
Sbjct: 398 LEFMLPDIFTT---------ENVDLKKLLNAEDTELIT------RMKSILGPFILRRLKS 442
Query: 538 DVAKDLPKKNEMVLFCKLTQYQKSKYLEF--------------LHSDELMKIRKG--KRQ 581
DV + L K + V + + + Q+ Y E L S L + K KRQ
Sbjct: 443 DVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQ 502
Query: 582 VLYGIDILRKICNHP----------DLLDLKRKK---------------------MNDYE 610
+ RKI NHP D++ + RK ND+
Sbjct: 503 ISNYFTQFRKIANHPLLIRRIYSDEDVIRIARKLHPIGAFGFECSLDRVIEEVKGFNDFR 562
Query: 611 DAD----YG-----------NPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQE 655
YG + S K + + +LL GH+ L+F+Q MLDIL+
Sbjct: 563 IHQLLFQYGVNDTKGTLSDKHVMLSAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEW 622
Query: 656 FISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYDVF--LLTTRVGGLGINLTGAN 713
+ ++ + + R+DG+T + RQ++VD FNN+ +F LL+TR GG G+NLTGA+
Sbjct: 623 TL-----DVIGVTYRRLDGSTQVTDRQTIVDTFNNDK-SIFACLLSTRAGGQGLNLTGAD 676
Query: 714 RIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL 773
+II D D+NP D QA +R RIGQ + VTI+RL+ +++E IY K L +L
Sbjct: 677 TVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVL 736
Query: 774 K 774
+
Sbjct: 737 E 737
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 215 bits (547), Expect = 3e-55
Identities = 185/663 (27%), Positives = 297/663 (43%), Gaps = 126/663 (19%)
Query: 207 DGDEHHYQQRLKK------WVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGD 260
D +EH ++R K + + K+ D Q P+ DA I + ++
Sbjct: 170 DDEEHSSKKRKTKKKSITDFFKKQKKNEDTTTQNGAPD---------DAAIKQPRLLKNC 220
Query: 261 IFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVV 320
I L PYQ + WL LY+ G GI+ DEMGLGKT+Q IA LA ++ GP LV
Sbjct: 221 I---LKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEM-DTKGPFLVT 276
Query: 321 CPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDY 380
P + + W NEF + P + YGT Y +
Sbjct: 277 APLSTLDNWMNEFAKFAPDLPVL--------------------------KYYGTNGYKER 310
Query: 381 EKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKI 440
K +K ++ G I+IT+Y + ++ +++ W + I+DEGH++
Sbjct: 311 SAK------------LKNFFKQHGGTG-IVITSYEIILRDTDLIMSQNWKFLIVDEGHRL 357
Query: 441 RNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQF-ANP 499
+N + + K++ T NR++L+GTP+QNNL ELWSL +F+ P +F + F +
Sbjct: 358 KNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDS 417
Query: 500 INMGGYANASN----IQVKTGYKCAVALRDLISPYLLRRVKSDV-AKDLPKKNEMVLFCK 554
+N+G +N+ I + L ++ P+LLRR+K V A LP K E ++ C
Sbjct: 418 LNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYIINCP 477
Query: 555 LTQYQKSKYLEFLHS-------DELMK-----------------IRKGKRQVLYGIDIL- 589
+T Q+ Y L+ EL+K IR L G +
Sbjct: 478 MTSAQEKFYKAGLNGKLKKTMFKELIKDFFTLNDEYIGHVSNRSIRDFINYKLSGNETSN 537
Query: 590 --RKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLL----LLWHSQGH----- 638
KI +P LL + + + + + N M ++Q++ L + H
Sbjct: 538 TDNKI--NPTLLQMDKLYKKNLQ-MEISNKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLT 594
Query: 639 -KTLLFTQSR-QMLD--------------ILQEFISYKD-----PELSDLKFLRMDGTTN 677
+TLL T + Q+L I +F++ D +L+ R+DG+ N
Sbjct: 595 LETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVN 654
Query: 678 IGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAW 735
+R+ ++KFN+ + +++FLL+TR GLGINL GA+ +++FD DWNP D+QA +R
Sbjct: 655 NETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCH 714
Query: 736 RIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGG 795
RIGQ+ V +YRL +IE I R K+ L +++ K K+ F G
Sbjct: 715 RIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGKFNNLKKLALNEGFFFEGK 774
Query: 796 DNG 798
+G
Sbjct: 775 QSG 777
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 212 bits (540), Expect = 2e-54
Identities = 184/644 (28%), Positives = 281/644 (43%), Gaps = 138/644 (21%)
Query: 206 DDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLL 265
DD DE ++ ++ S++ + I ++ K P++ IS L
Sbjct: 529 DDDDEFVATRKNTHVISTTSRN----GRKPIVKFFKGKPRLLSPEIS------------L 572
Query: 266 FPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATV 325
YQ+T + WL LYQ I+ D+MGLGKT Q+I+F A L + GP LVV P++
Sbjct: 573 KDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQINE-PGPHLVVVPSST 631
Query: 326 MKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEK 385
++ W EF + P + + YG
Sbjct: 632 LENWLREFQKFAPALK--------------------------IEPYYG------------ 653
Query: 386 TRTSLESRKSVKKLLEKVITDGHIIITTY---VGLRLHSEALLNVRWGYAILDEGHKIRN 442
SL+ R+ ++ +LE+ +I+TTY G + L N + + DEGH ++N
Sbjct: 654 ---SLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKN 710
Query: 443 PDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPG----KLGTLPVFQQQFAN 498
S+ +++ R++L+GTP+QNNL EL SL +F+ P K + +Q A
Sbjct: 711 STSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAK 770
Query: 499 PINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQY 558
+ + N + + ++ P++LRR K V K LP K+ + +C+L
Sbjct: 771 TTD-----DNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLKHLPPKHTHIQYCELNAI 825
Query: 559 QKSKY----------LEFLHSDELMKIRKGKRQVLYG-----IDILRKICNHPDLL---- 599
QK Y + EL K K K ++ I LRK HP L
Sbjct: 826 QKKIYDKEIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIMALRKASLHPLLFRNIY 885
Query: 600 -DLKRKKMNDY-----------------EDADYGNP------------------------ 617
D KM+D ED Y
Sbjct: 886 NDKIITKMSDAILDEPAYAENGNKEYIKEDMSYMTDFELHKLCCNFPNTLSKYQLHNDEW 945
Query: 618 ARSGKMQVVKQLL-LLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
+SGK+ +K+LL + + K L+F+ Q+LDIL+ +S D KFLR+DG+T
Sbjct: 946 MQSGKIDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLS-----TLDYKFLRLDGST 1000
Query: 677 NIGSRQSLVDKF-NNEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAW 735
+ RQ L+DKF ++ +F+L+T+ GG GINL AN +IIFD +NP D QA +RA
Sbjct: 1001 QVNDRQLLIDKFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAH 1060
Query: 736 RIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQK 779
R+GQ +EV I L+ SIEEKI+ K L + I +D K +
Sbjct: 1061 RVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQ 1104
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 211 bits (537), Expect = 5e-54
Identities = 172/598 (28%), Positives = 275/598 (45%), Gaps = 86/598 (14%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQ + WL + I+ DEMGLGKT+Q+I+F++ L + K PVLV+ P
Sbjct: 556 LMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCF-PVLVIVPHA 614
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W E W P + +L +G+ E
Sbjct: 615 TVANWERELKKWAPFLQINVL--VGS---------------------------------E 639
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
K R+ + + + + K ++ H+++ + + L +W I+DEG +++N
Sbjct: 640 KNRSLVRDYRLINQKDPKHVST-HVLVISASNVEREISLLRKFQWKVLIVDEGQRLKNDQ 698
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S + +K+ +++L+GTP+QNN+ EL++L F+ P K+ + ++
Sbjct: 699 SSLFYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQFLNPMKINAAELEKR---------- 748
Query: 505 YANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYL 564
Y+ +V L ++ P+ LRRVKS+V + P K E+++ +T QK Y
Sbjct: 749 YSIIDTEKV-------TELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYK 801
Query: 565 EFLHSDELMKIRK-----------GKRQVLYGIDI--LRKICNHPDLLDLKRKKMN-DYE 610
L S L +R G+R + LRK HP + + N YE
Sbjct: 802 SIL-SKNLSLLRNITGYANTSSSGGQRTTSLNNILMQLRKTLAHPYIYSPDIEDRNLPYE 860
Query: 611 DADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFL 670
A S K +++ L+ ++GH+ LLF+Q Q LDIL+++ YK+ + +
Sbjct: 861 LAMRSLEEASCKFLILRLLVPKLITRGHRILLFSQFIQQLDILEDWFEYKN-----IAYA 915
Query: 671 RMDGTTNIGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDM 728
R DG ++ RQS +D FN N FLL+TR GG+GINL A+ +II DPD+NP DM
Sbjct: 916 RFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDM 975
Query: 729 QARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK-------DPKQKRF 781
QA RA R GQK++V ++ L S+EEKI K L + I++ K
Sbjct: 976 QAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIVESLDQNHNSEKDLES 1035
Query: 782 FKMNDLHDLFTLGGDN-GYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQISGVHKL 838
+ LF GD + E++ E++ KQ TS TD+ D S G ++
Sbjct: 1036 ILRHGARALFEEAGDEPSIKYNEYSVELLISEAE-KQEDTS-TDESDIKSNKFGFFRV 1091
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 208 bits (529), Expect = 4e-53
Identities = 171/556 (30%), Positives = 260/556 (46%), Gaps = 100/556 (17%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WLC +Y+ GI+ DEMGLGKT Q+I+FLA+L + + LVV P++ +
Sbjct: 417 YQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASL-KEKGIQNRHLVVVPSSTLG 475
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF + P R + S GT
Sbjct: 476 NWLREFEKFCPSLR--------------------------VESYSGT------------- 496
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTY---VGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
+ + K + TD +++TTY G R L R+ +I DEGH ++N
Sbjct: 497 ----QSERINKRYYLMDTDFDVLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRM 552
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGG 504
S+ + R++++GTP+QNNL EL SL F+ P VF +
Sbjct: 553 SERYKHLMNIPANFRLLITGTPLQNNLKELISLLAFMLP------KVFDNNMQGLDIIYK 606
Query: 505 YANASNIQVKTGYKCAVAL---RDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKS 561
S+ ++ Y + + +++P++LRR K +V DLP K + V +C + + Q S
Sbjct: 607 IKTTSDGDIERAYLSQERISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQLS 666
Query: 562 KYLEFL---------HSDELMKIRKGKRQVL-----YGIDIL----RKICNHPDLLDLK- 602
YL L + LM++RK L Y ++ L ++I LD
Sbjct: 667 LYLSVLELKNLVNANRENILMQLRKAALHQLLFRSQYNLETLSLMSKRILREDAYLDANP 726
Query: 603 ------RKKMNDYEDADYGNPAR-------SGKMQV----VKQL--LLLWHSQGHKTLLF 643
+ M+D+E + R GK + VK+L LL + L+F
Sbjct: 727 QYIFEDMEVMSDFELHKLADQYRHLHPFALKGKPWMDSAKVKKLCSLLKKSRPNERILIF 786
Query: 644 TQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN-NEPYDVFLLTTRV 702
+Q Q+LDIL+ ++ DL+FLR+DG+T + +RQ L+D F+ NE Y VFLL+T+
Sbjct: 787 SQFTQVLDILEYVLN-----TLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKS 841
Query: 703 GGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQ 762
GG GINLT AN +I+FD +NP DMQA +RA R+GQ R V +YRL+ +IEE I
Sbjct: 842 GGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLA 901
Query: 763 IFKQFLSNKILKDPKQ 778
K L + + D ++
Sbjct: 902 NTKLTLESSLTTDSEK 917
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 207 bits (526), Expect = 9e-53
Identities = 134/391 (34%), Positives = 204/391 (51%), Gaps = 26/391 (6%)
Query: 429 WGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGT 488
W Y +LDEGH +RN QL ++R+ILSGTP+QN+ +LWSLF ++ PG LG+
Sbjct: 1093 WNYIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLMPGYLGS 1152
Query: 489 LPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNE 548
F+ QF I A+ +K G L L+ P+++RR+K++V K+LP+KN
Sbjct: 1153 EKQFRSQFLKKIMKCRLPKANEADLKAGSAAISQLHKLVLPFVMRRLKTEVLKELPEKNV 1212
Query: 549 MVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLL-DLKRKKMN 607
C+LT+ QK Y F+ L + LRK+ +H L+ D K
Sbjct: 1213 QDYECELTEDQKEIY-RFVVDRCTSSQEDVGLSSLVTLITLRKLTDHTKLVHDTLAKIGA 1271
Query: 608 DYEDADYGNPARSGKMQVVKQLLLLWH-------------------SQGHKTLLFTQSRQ 648
A+SGKM+ +KQLL+ + GH+ L+F Q +
Sbjct: 1272 PQYILSKALAAKSGKMEALKQLLIECEICKNPDEEVEQPEDLGGLVASGHRALIFCQWKT 1331
Query: 649 MLDILQEFISYKDPEL-SDLKFLRMDGTTNIGSRQSLVDKFN-NEPYDVFLLTTRVGGLG 706
++ + + K E S + L +DG+ G R +V++FN ++ DV +LTT VGG+G
Sbjct: 1332 SAKLVSD--ALKSGEFGSVVSHLVLDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVG 1389
Query: 707 INLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQ 766
+NLTGA+ +I D DWNP D+QA +RA R+GQ R V +YRL+ G++EEK+ FK
Sbjct: 1390 LNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAKFKL 1449
Query: 767 FLSNKIL-KDPKQKRFFKMNDLHDLFTLGGD 796
+ ++ D + +L ++FTL GD
Sbjct: 1450 NTAQALIGADNTSMMTMETGELMNMFTLDGD 1480
Score = 53.1 bits (126), Expect = 2e-06
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 181 ISDSEELLNESAGKLDVIRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWL 240
++D E + ++AG+ P +++ D + ++ +A +S+ ++ N P L
Sbjct: 907 LADQCETVRDAAGEAFRRLIPVITLENPD-FSIEGMSQELLAKKSEYSNFINVLGSPSSL 965
Query: 241 KPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQI 300
P++ A+I F +L YQ + W+ L G GI+ D+MGLGKT+Q
Sbjct: 966 ---PRVIRADIRGGFDTS-----MLREYQLEGITWIRFLRTYGLHGILADDMGLGKTLQT 1017
Query: 301 ---IAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWP 338
IA + + L+VCP T++ WC E++ ++P
Sbjct: 1018 MCSIALSVDRDEMSEFHRCSLIVCPRTLVDHWCLEWNRFFP 1058
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 204 bits (520), Expect = 4e-52
Identities = 153/546 (28%), Positives = 266/546 (48%), Gaps = 80/546 (14%)
Query: 248 DANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATL 307
DA ++ + I L YQ V+WL LY GI+ D+MGLGKT+Q++ FL +
Sbjct: 780 DAGKIPEYHIKCPISVKLRDYQMEGVKWLNFLYSFSLNGILADDMGLGKTLQVLTFLCSE 839
Query: 308 HHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKML 367
+ K N VLV+CP+++ W +E ++P A I E+ +
Sbjct: 840 IY--KTNRKVLVICPSSLTGHWKSEVKKFFPFVAAEIYKR------------EDRDTYSI 885
Query: 368 MTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNV 427
+ S+Y TF NDY +EK
Sbjct: 886 LISSYETFR-NDY----------------LNFIEK------------------------- 903
Query: 428 RWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLG 487
W Y ++DEGH +RN + + ++ +++L+GTP+ N++ +L SLF+F+ P +G
Sbjct: 904 DWFYVVVDEGHVLRNKQTILYSRMNMIRCSRKMVLTGTPVHNSVEDLISLFNFLMPNYIG 963
Query: 488 TLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKN 547
++++ + +N+ S+ +++ +K L + P++LRR+K DV KDLP K
Sbjct: 964 P----EKEYGS-LNV----KMSDSEIEKTHKRLDLLHRKVLPFILRRLKIDVLKDLPPKI 1014
Query: 548 EMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYG-IDILRKICNHPDLLDLKRKKM 606
+ +L Q+ Y E ++ K G ++ YG +D L L +
Sbjct: 1015 IRDITVELGPVQEKLYREI--DEKGGKESLGDAELEYGKVDQKNVGFKRTRDLFLAVSHI 1072
Query: 607 NDYEDADYGNPARSGKMQVVKQLLLLWHSQ--GHKTLLFTQSRQMLDILQEFISYKDPEL 664
++D+ S K++ ++ ++ L + G K L+F Q + +D++ + I K
Sbjct: 1073 GHFKDST----EVSCKVKALEDIISLCGGEDLGSKILIFFQFKSTIDLVIKDIMKK---- 1124
Query: 665 SDLKFLRMDGTTNIGSRQSLVDKFNNEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNP 724
K+ R+DG+ +R + ++FN + LTT+VGGLG+NLTGA+ +++++ DWNP
Sbjct: 1125 YKFKYSRLDGSVPSAARTKIAEEFNTGTTQMLFLTTQVGGLGLNLTGADTVVMYEHDWNP 1184
Query: 725 STDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKM 784
D+QA +RA RIGQKR V ++R + ++EEK+ + Q FK F++N ++ +Q +
Sbjct: 1185 FNDLQAMDRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVANSLVS--QQNADIET 1242
Query: 785 NDLHDL 790
D DL
Sbjct: 1243 MDTKDL 1248
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 203 bits (516), Expect = 1e-51
Identities = 166/544 (30%), Positives = 255/544 (46%), Gaps = 107/544 (19%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L YQ V+WL +Y + I+GDEMGLGKTIQI+AFL+ L K GP L+V P++
Sbjct: 394 LHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIGK-TGPHLIVVPSS 452
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
++ W EFH W P + + + YG
Sbjct: 453 TIENWIGEFHKWCPSIQ--------------------------LLTYYG----------- 475
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEA---LLNVRWGYAILDEGHKIR 441
S + RK ++ ++K +I+TTY + S+ N Y I DEGH ++
Sbjct: 476 ----SQDERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLK 531
Query: 442 NPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGT----LPVFQQQFA 497
N DS+ ++K + +I+L+GTP+QNNL EL SL FV + Q F
Sbjct: 532 NCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCEDITHLLQHFK 591
Query: 498 NPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQ 557
+G + N + + A + ++ PY+LRR+K+ V LP K+E ++ ++ +
Sbjct: 592 Q---LGPALDTKNKALYQQDRIEEA-KAILQPYILRRLKNQVLGSLPSKSEQIIEVEMKK 647
Query: 558 YQKSKY---LEFLHSDE--------LMKIRKGKRQVL-----YGIDILRKICNHPDLLDL 601
QK Y +E L E LM++R+ L Y L KI +L L
Sbjct: 648 PQKQLYDNIVEALQQSEESGDSYGSLMRLRQAANHPLLRRSEYTDQKLDKIAK---MLCL 704
Query: 602 KRKKMNDY------EDADYGNPAR-----------------------SGKMQVVKQLLLL 632
+ K D ED + + + SGK + + +L
Sbjct: 705 REKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNEQLALKSGKCEQLDVMLPE 764
Query: 633 WHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN-NE 691
+G K L+F+Q MLDIL+ +++ + + R+DG T + RQ ++++FN ++
Sbjct: 765 IQKKGDKVLIFSQFTSMLDILEVYLNIRG-----YSYKRLDGQTPVLDRQEMINEFNLSK 819
Query: 692 PYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIA 751
VFLL+TR GGLGINLT AN III D D+NP D QA +R R+GQ++ V + RL+
Sbjct: 820 DLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSK 879
Query: 752 GSIE 755
G++E
Sbjct: 880 GTVE 883
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 201 bits (512), Expect = 4e-51
Identities = 162/576 (28%), Positives = 260/576 (45%), Gaps = 110/576 (19%)
Query: 310 SRKLNGPVLVVCPATVMKQWCNEFHTWWPPFR--AVILHSIGAGMNKGTQIPEEELEKML 367
+++L L++ P++++ W EF WW R AVI
Sbjct: 180 AQQLANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVI----------------------- 216
Query: 368 MTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNV 427
T ND + + +S KL+ ++ +Y + H E L +
Sbjct: 217 ------ALTAND----------ITTYQSTIKLMP-------YLVISYDLAQRHVEKLKII 253
Query: 428 RWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLG 487
R+ + DEGHK++N D + T L+ R+IL+GTP+QN+ E +SL DFV P G
Sbjct: 254 RFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFG 313
Query: 488 TLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDV-AKDLPKK 546
++ F++ ++ L +LI +LRR +DV K LP+K
Sbjct: 314 SIVEFRKMCSDRPEQ--------------------LNELIDECMLRRTAADVDLKHLPEK 353
Query: 547 NEMVLFCKLTQYQK---SKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLL-DLK 602
+E +LFC + QK S+ +++ D L I R++ NHP LL D
Sbjct: 354 HEYILFCAASPIQKHVHSEICDYMTGDALSLIF-----------FARQLANHPKLLLDNL 402
Query: 603 RKKMN--------------DYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQ 648
R+K D G SGK+ + ++ + T++ + +
Sbjct: 403 REKTEKSKAHKHSPLLLAFDGAHMPRGGVKESGKLTALVDMIKCFRLLQECTVIVSNYIE 462
Query: 649 MLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNN--EPYDVFLLTTRVGGLG 706
LD++Q+ Y + K LR+DG T + RQ LV FN+ +P ++FLL+T+ GG+G
Sbjct: 463 TLDMIQQLCEYLN-----FKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVG 517
Query: 707 INLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQ 766
+NL GA+R+++FD DWNP+ D QA R WR GQ R IYRL+ G+IEEK+ RQI K
Sbjct: 518 LNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKT 577
Query: 767 FLSNKI--LKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETD 824
L I ++ F DL D+FT G E + +N+ E D
Sbjct: 578 GLGCVIDAIEVGDTIATFTDEDLKDIFTFTGSATECNTHDLCECPCDGCGMLENEMDEED 637
Query: 825 DFDKLSQISGVHKLE--GFFNSKEQDEKQSTEDDRI 858
D D + + + K++ G + + D+ + +D+ +
Sbjct: 638 DGDDVVE-NDAEKIDKSGKIDKIDSDDDEEADDEEL 672
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 200 bits (509), Expect = 8e-51
Identities = 167/545 (30%), Positives = 245/545 (44%), Gaps = 99/545 (18%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L YQ + WL +++Q GI+ DEMGLGKTIQ+IAFLA L + L+V P++
Sbjct: 289 LADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVVPSS 348
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W E W PE +EK Y +
Sbjct: 349 TLDNWEAEISRW---------------------CPELVVEK--------------YHGSQ 373
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTY--VGLRLHSEALLNV-RWGYAILDEGHKIR 441
R + R + T +++TTY VG + V + Y I DE H ++
Sbjct: 374 DERRRMRGR-----FAKDGFTGFDVLLTTYHIVGSTPEERKMFRVCKLDYVIFDEAHMLK 428
Query: 442 NPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLG-TLPVFQQQFANPI 500
N + + + RI+L+GTP+QNNL EL SL FV P ++ + FA
Sbjct: 429 NMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKG 488
Query: 501 NMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQK 560
G + + +T + A + ++ P++LRR+K DV K+LPKK +V ++ QK
Sbjct: 489 KSDGDQDEVSQFQETQIQRA---KRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQK 545
Query: 561 SKYLEFLHSDELMKIRKGKRQVLYGIDIL---RKICNHPDLL------------------ 599
Y E + K GI I+ R+I NHP L+
Sbjct: 546 IYYHELVDYYSNNKGEVCSSSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLAN 605
Query: 600 --DLKR-------------------KKMNDYEDADYGNPAR----SGKMQVVKQLLLLWH 634
K+ + MN +E D P SGK + LL
Sbjct: 606 ASSFKKTNEQYIFEELAVMSDFQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLK 665
Query: 635 SQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN-NEPY 693
++GH+ LLF+Q MLDI++E++ + F R+DG T + RQ L+ FN ++
Sbjct: 666 AEGHRVLLFSQFTMMLDIVEEYL-----RIRKFGFCRLDGATAVNVRQDLITDFNGDDSI 720
Query: 694 DVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGS 753
VFLL+T+ GG+GINLT A+ +I D D+NP D QA +R R+GQ+R VTIYRL+ +
Sbjct: 721 FVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISEST 780
Query: 754 IEEKI 758
IEE I
Sbjct: 781 IEEGI 785
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 173 bits (438), Expect = 1e-42
Identities = 116/335 (34%), Positives = 164/335 (48%), Gaps = 49/335 (14%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL +Y++ GI+ DEMGLGKTI IA LA L + + GP L+V P +VM
Sbjct: 124 YQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVML 183
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF W P F+ + TY K+ K +
Sbjct: 184 NWETEFLKWCPAFKIL--------------------------------TYFGSAKERKLK 211
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
R+ KL H+ ITTY + S+ +W Y ILDE H I+N S
Sbjct: 212 -----RQGWMKL-----NSFHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQR 261
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
T ++ RI+L+GTP+QN+L ELWSL F+ P + F+ F NPI A
Sbjct: 262 WQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPI-----AG 316
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
Q K + L +++ P+LLRR+K DV K LP K+E V+FC+L++ Q++ Y +F+
Sbjct: 317 MVEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFI 376
Query: 568 HSDELM-KIRKGKRQVLYGIDI-LRKICNHPDLLD 600
S E + G + I + LRK+CNHPDL +
Sbjct: 377 ASTETQATLTSGSFFGMISIIMQLRKVCNHPDLFE 411
Score = 134 bits (336), Expect = 1e-30
Identities = 74/174 (42%), Positives = 110/174 (62%), Gaps = 7/174 (4%)
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GK+Q + LL GH+ L+FTQ +MLD+L+ FI+ L ++R+DG+T
Sbjct: 660 GKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFIN-----LYGYTYMRLDGSTPPEE 714
Query: 681 RQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
RQ+L+ +FN P +F+L+TR GG+GINL GA+ +I +D DWNP+ D QA++R RIGQ
Sbjct: 715 RQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQ 774
Query: 740 KREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPK-QKRFFKMNDLHDLFT 792
REV IYRL+ +IEE I + K+ L N ++++ + FFK D +LF+
Sbjct: 775 TREVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFS 828
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 169 bits (427), Expect = 3e-41
Identities = 126/373 (33%), Positives = 192/373 (50%), Gaps = 50/373 (13%)
Query: 549 MVLFCKLTQYQKSKYLEFLH---SDELMKIRKGKRQV--LYG--IDILRKICNHPDLLDL 601
+VL C + Q S +LE + DE K +K V ++G ID+L I +DL
Sbjct: 474 LVLPCLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDL 533
Query: 602 KRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKD 661
K GKM+ +++L+ W S+G K LLF+ S +MLDIL++F+ K
Sbjct: 534 SDVK-------------HCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKG 580
Query: 662 PELSDLKFLRMDGTTNIGSRQSLVDKFNNEPY-DVFLLTTRVGGLGINLTGANRIIIFDP 720
F R+DG+T RQSLVD FN P VFL++T+ GGLG+NL ANR++IFDP
Sbjct: 581 -----YSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDP 635
Query: 721 DWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKR 780
+WNPS D+QA++R++R GQKR V ++RL+ AGS+EE +Y RQ++KQ LSN + + R
Sbjct: 636 NWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMETR 695
Query: 781 FFK--------MNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKLSQI 832
+F+ +L + L D + F +IV + ++ S D+ K S +
Sbjct: 696 YFEGVQDCKEFQGELFGISNLFRD--LSDKLFTSDIV------ELHRDSNIDENKKRSLL 747
Query: 833 SGVHKLEGFFNSKEQDEKQSTEDDRIMGSLFSSANSVDTNERDDIIG-AEATRNVKSALD 891
G ++++E + + + V + +DII E T + L+
Sbjct: 748 E-----TGVSEDEKEEEVMCSYKPEMEKPILKDLGIVYAHRNEDIINIGETTTSTSQRLN 802
Query: 892 ALKNS--RKQTKR 902
NS RK+ KR
Sbjct: 803 GDGNSADRKKKKR 815
Score = 153 bits (386), Expect = 2e-36
Identities = 96/328 (29%), Positives = 155/328 (46%), Gaps = 58/328 (17%)
Query: 257 VPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHS------ 310
VP I L +Q+ V+++ LY+ GGI+GD+MGLGKTIQ IAFLA ++
Sbjct: 143 VPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGE 202
Query: 311 ----RKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKM 366
GPVL++CP++++ W +EF W F+ + H M
Sbjct: 203 SCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNRDM-------------- 248
Query: 367 LMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDG-HIIITTYVGLRLHSEALL 425
+LEK+ G +++T++ R+ L
Sbjct: 249 --------------------------------ILEKLKARGVEVLVTSFDTFRIQGPVLS 276
Query: 426 NVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGK 485
+ W I DE H+++N S + C ++KT+ RI L+GT +QN ++EL++LF++V PG
Sbjct: 277 GINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGS 336
Query: 486 LGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPK 545
LGT F+ + P+ +G A A V+ K L L+ Y+LRR K + L
Sbjct: 337 LGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMM 396
Query: 546 -KNEMVLFCKLTQYQKSKYLEFLHSDEL 572
K + V+FC+++Q Q+ Y + E+
Sbjct: 397 GKEDNVVFCQMSQLQRRVYQRMIQLPEI 424
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 166 bits (419), Expect = 2e-40
Identities = 122/391 (31%), Positives = 184/391 (46%), Gaps = 58/391 (14%)
Query: 225 SKDRDYDNQPDIPEWLKPHPKISDANISE-DFMVPGDIFPLLFPYQKTCVQWLCELYQQG 283
+++ + D+ D+ E K+ + +S D VP + L YQK + WL LY
Sbjct: 657 TQNENRDDIKDVEE--DAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNNH 714
Query: 284 CGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAV 343
GI+ DEMGLGKTIQ I+ LA L ++ GP L+V P +V+ W EF + P F+ +
Sbjct: 715 TNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKVL 774
Query: 344 ILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKV 403
T+ + ++KEK RK K
Sbjct: 775 ------------------------------TYYGSPQQRKEK-------RKGWNK----- 792
Query: 404 ITDG-HIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIIL 462
D H+ I +Y + + RW Y +LDE H I+N S TQ R++L
Sbjct: 793 -PDAFHVCIVSYQLVVQDQHSFKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLL 851
Query: 463 SGTPIQNNLTELWSLFDFVYP-----GK----LGTLPVFQQQFANPINMGGYANASNIQV 513
+GTP+QNNL ELWSL F+ P GK L FQQ F P++ + Q
Sbjct: 852 TGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQD 911
Query: 514 KTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL-HSDEL 572
K K L ++ PYLLRR+K+DV K +P K E +++CKL++ Q+ Y +F+ +
Sbjct: 912 KETKKTVAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTK 971
Query: 573 MKIRKGK-RQVLYGIDILRKICNHPDLLDLK 602
+ G ++ + LRK+CNHP+L +++
Sbjct: 972 ATLASGNFMSIVNCLMQLRKVCNHPNLFEVR 1002
Score = 125 bits (313), Expect = 4e-28
Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 6/156 (3%)
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GK+Q + LL GH+ L+FTQ ++LD+L++F++Y ++R+DG T I
Sbjct: 1246 GKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHG-----YLYMRLDGATKIED 1300
Query: 681 RQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
RQ L ++FN + VF+L++R GGLGINLTGA+ +I +D DWNP+ D Q ++R RIGQ
Sbjct: 1301 RQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQ 1360
Query: 740 KREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKD 775
R+V IYR + +IE I + K+ L N ++++
Sbjct: 1361 TRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQE 1396
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 161 bits (408), Expect = 4e-39
Identities = 109/346 (31%), Positives = 163/346 (46%), Gaps = 58/346 (16%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ +QWL Y+QG GI+ DEMGLGKTIQ +AFLA L + + GP LVV PA+V+
Sbjct: 589 YQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLN 648
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W +E + P + + Y + R
Sbjct: 649 NWADEISRFCPDLKTL-----------------------------------PYWGGLQER 673
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
T L + K++ + HI+IT+Y L + V+W Y +LDE I++ S
Sbjct: 674 TILRKNINPKRMYRRD-AGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIR 732
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFA----NPINMG 503
T +NR++L+GTPIQNN+ ELW+L F+ P F + F+ N G
Sbjct: 733 WKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHG 792
Query: 504 GYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKY 563
G N + L ++ P++LRRVK DV +L K E+ + CKL+ Q++ Y
Sbjct: 793 GTLNEHQLN---------RLHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFY 843
Query: 564 LEF---LHSDELMKIRKGK---RQVLYGIDI---LRKICNHPDLLD 600
+ EL +G+ ++VL ++I LRK+CNHP+L +
Sbjct: 844 QAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPELFE 889
Score = 111 bits (278), Expect = 5e-24
Identities = 61/155 (39%), Positives = 95/155 (60%), Gaps = 15/155 (9%)
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
SGK+Q + LL + H+ LLF Q +ML+IL+++++Y+ K+LR+DG++ I
Sbjct: 1205 SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRK-----YKYLRLDGSSTIM 1259
Query: 680 SRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
R+ +V F + VFLL+TR GGLGINLT A+ +I ++ DWNP+ D+QA +RA R+G
Sbjct: 1260 DRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG 1319
Query: 739 QKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKIL 773
Q ++ T +EEKI HR K + ++
Sbjct: 1320 QTKDET---------VEEKILHRASQKNTVQQLVM 1345
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 159 bits (403), Expect = 2e-38
Identities = 116/388 (29%), Positives = 175/388 (44%), Gaps = 75/388 (19%)
Query: 214 QQRLKKWVANRS--KDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKT 271
++RL+++ A RS K ++ + P P I + E YQ
Sbjct: 236 KERLREFGAERSTKKFKEGGEVGETTTRYVPQPSILKCTLKE--------------YQLR 281
Query: 272 CVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCN 331
+ WL LY +G GI+ D+MGLGKT+Q I+ LA L+ + ++ GP LVV ++ + W
Sbjct: 282 GLNWLVSLYDKGINGILADDMGLGKTVQSISLLAHLYETEEVPGPFLVVTISSTLDNWAQ 341
Query: 332 EFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLE 391
EF + P FR F+ + E+KE
Sbjct: 342 EFARFLPSFRVC------------------------------RFSGSPSERKE------- 364
Query: 392 SRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTC 451
L+K + ++ITTY + L ++W Y ILDE I++ S T
Sbjct: 365 --------LKKRFKNSDVVITTYQTAVSDEKMLKKIKWQYMILDEAQAIKSSMSRRWKTL 416
Query: 452 KQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNI 511
K +NR++L+GTPIQN++ ELW+L F+ P +L F F+ I S I
Sbjct: 417 LSFKARNRLLLTGTPIQNSMQELWALLHFIMPTLFDSLNEFSDWFSKEI------ETSAI 470
Query: 512 QVKT-GYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSD 570
KT K L ++ P++LRR KSDV +L +K ++ L+C L+ QK Y E S
Sbjct: 471 MKKTVDEKSLQRLHAILKPFMLRRHKSDVIHELGQKTQIDLYCDLSYRQKVLYKEITRSC 530
Query: 571 ELMKIRKGKRQVLYGIDILRKICNHPDL 598
M++ Q L+K+CNHPDL
Sbjct: 531 SSMEMENLLMQ-------LKKVCNHPDL 551
Score = 120 bits (302), Expect = 8e-27
Identities = 55/139 (39%), Positives = 93/139 (66%), Gaps = 5/139 (3%)
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
SGK+ V+ +LL ++GH+ L++ Q +M+D++++++ K +LR+DG+
Sbjct: 725 SGKLVVLDELLPKLKAEGHRLLMYFQMTRMIDLIEDYLVRKG-----YTYLRLDGSLKAS 779
Query: 680 SRQSLVDKFNNEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
+R ++ + +FLL+TR GGLGINLT A+ ++ +D DWNP+ D QA +RA R+GQ
Sbjct: 780 ARAEVIRDWQASDKFIFLLSTRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRLGQ 839
Query: 740 KREVTIYRLMIAGSIEEKI 758
R+VT+YRL+ G++EEK+
Sbjct: 840 TRDVTVYRLITRGTVEEKV 858
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 153 bits (386), Expect = 2e-36
Identities = 105/336 (31%), Positives = 158/336 (46%), Gaps = 51/336 (15%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ + WL +Y++ GI+ DEMGLGKTIQ I+ LA L + GP L++ P +VM
Sbjct: 424 YQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVML 483
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W E W P F+ + TY +K+ K +
Sbjct: 484 NWEMELKRWCPSFKIL--------------------------------TYYGAQKERKLK 511
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
++ + H+ IT+Y + +A W Y ILDE I+N S
Sbjct: 512 RQGWTKPNAF----------HVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQR 561
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
+ +Q R++L+GTP+QN+L ELWSL F+ P + F++ F+NP+ G
Sbjct: 562 WQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLT--GMIE 619
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
S + L ++ P+LLRRVK DV K +PKK E V+ C+L++ Q+ Y +F+
Sbjct: 620 GSQ---EYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFM 676
Query: 568 HSDELMKIRKGKRQVLYGIDI---LRKICNHPDLLD 600
+ K + I+I LRK+CNHP+L D
Sbjct: 677 -AQTTTKETLATGHFMSVINILMQLRKVCNHPNLFD 711
Score = 133 bits (334), Expect = 2e-30
Identities = 67/175 (38%), Positives = 113/175 (64%), Gaps = 7/175 (4%)
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GK+Q + LL ++GH+ L+FTQ +MLD+L++F++Y +LR+DG+T +
Sbjct: 1784 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGH-----LYLRLDGSTRVEQ 1838
Query: 681 RQSLVDKFN-NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
RQ+L+++FN ++ F+L+TR GG+G+NLTGA+ ++ +D DWNP+ D QA++R RIGQ
Sbjct: 1839 RQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 1898
Query: 740 KREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPK-QKRFFKMNDLHDLFTL 793
R+V IYRL+ ++EE I + K+ L + ++ +FK + +LF +
Sbjct: 1899 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDM 1953
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 152 bits (385), Expect = 2e-36
Identities = 137/556 (24%), Positives = 231/556 (40%), Gaps = 94/556 (16%)
Query: 73 RAKLKEQIEDVENYELKPLEQDIAEIKERI-KGLKETNEADTTTKSTERQPGESERDFLL 131
+ + + I ++ N+ K E++ ++K++I K E + + K ++RQ + +FLL
Sbjct: 529 QTRARRGIREMSNF-WKKNEREERDLKKKIEKEAMEQAKKEEEEKESKRQA--KKLNFLL 585
Query: 132 RTGKITGFGNSVNFKVEDEE-ESKSILLAERQMLKNIXXXXXX----XXXXXXFISDSEE 186
++ + + + K++ E E ++ + + KNI F ++++E
Sbjct: 586 TQTEL--YSHFIGRKIKTNELEGNNVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDE 643
Query: 187 LLNESAGK-----LDVIRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLK 241
L A + L R A+ DD H ++ + ++ N + E
Sbjct: 644 QLRLRAAENASNALAETRAKAKQFDDHANAHEEEE-------EEDELNFQNPTSLGEITI 696
Query: 242 PHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQII 301
PKI + E YQ + WL LY QG GI+ DEMGLGKT+Q I
Sbjct: 697 EQPKILACTLKE--------------YQLKGLNWLANLYDQGINGILADEMGLGKTVQSI 742
Query: 302 AFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEE 361
+ LA L + + GP LVV PA+ + W NE + P F+ +
Sbjct: 743 SVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKIL------------------ 784
Query: 362 ELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHS 421
+G +K R +L K+ H+++T+Y + +
Sbjct: 785 --------PYWGNANDRKVLRKFWDRKNLRYNKNAPF---------HVMVTSYQMVVTDA 827
Query: 422 EALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFV 481
L ++W Y ILDE I++ S +NR++L+GTPIQN++ ELW+L F+
Sbjct: 828 NYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFI 887
Query: 482 YPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAK 541
P + F + F+ I AN K + L ++ P++LRRVK +V
Sbjct: 888 MPSLFDSHDEFNEWFSKDIESHAEANT-----KLNQQQLRRLHMILKPFMLRRVKKNVQS 942
Query: 542 DLPKKNEMVLFCKLTQYQKSKY--LEFLHSDELMKIRKGK---------------RQVLY 584
+L K E+ + C LTQ Q Y L+ S I + ++
Sbjct: 943 ELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLIN 1002
Query: 585 GIDILRKICNHPDLLD 600
+ RK+CNHPDL +
Sbjct: 1003 AVMQFRKVCNHPDLFE 1018
Score = 133 bits (334), Expect = 2e-30
Identities = 68/195 (34%), Positives = 119/195 (60%), Gaps = 13/195 (6%)
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
S K++ + +LL+ S+GH+ L++ Q +M+D+++E+++Y+ +R+DG++ +
Sbjct: 1298 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQ-----YNHIRLDGSSKLE 1352
Query: 680 SRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIG 738
R+ LV + P VFLL+TR GGLGINLT A+ +I +D DWNP+ D QA +RA R+G
Sbjct: 1353 DRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLG 1412
Query: 739 QKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNG 798
Q R+VT+YRL++ G+IEE++ R K+ + +++ Q++ K ++ G+N
Sbjct: 1413 QTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIKTIEV-------GEND 1465
Query: 799 YETEEFNQEIVKQTG 813
E + + Q G
Sbjct: 1466 SEVTREGSKSISQDG 1480
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 148 bits (374), Expect = 4e-35
Identities = 119/414 (28%), Positives = 186/414 (44%), Gaps = 64/414 (15%)
Query: 198 IRKPAEAIDDGDEHHYQQRLKKWVANRSKDRDYDNQPDIP----EWLKPHPK-----ISD 248
++ P +GD H + + +V S+D D + Q ++ E LK PK +
Sbjct: 527 LQDPTAEDGNGDGHGVLENVD-YVKLNSQDSD-ERQQELANIAEEALKFQPKGYTLETTQ 584
Query: 249 ANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLH 308
F++ G L YQ + W+ LY++ GI+ DEMGLGKTIQ I+ LA +
Sbjct: 585 VKTPVPFLIRGQ----LREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMA 640
Query: 309 HSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLM 368
S + GP L+V P +V+ W EF W P + +
Sbjct: 641 CSESIWGPHLIVVPTSVILNWEMEFKKWCPALK--------------------------I 674
Query: 369 TSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVR 428
+ +GT KE+ E RK K H+ IT+Y + A
Sbjct: 675 LTYFGT-------AKERA----EKRKGWMK-----PNCFHVCITSYKTVTQDIRAFKQRA 718
Query: 429 WGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGT 488
W Y ILDE I+N S ++ + R++L+GTP+QN+L ELWSL F+ P +
Sbjct: 719 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 778
Query: 489 LPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNE 548
F+ F+NP+ N G L ++ P++LRR+K +V K LP+K E
Sbjct: 779 HDDFKDWFSNPLTGMMEGNMEFNAPLIG-----RLHKVLRPFILRRLKKEVEKQLPEKTE 833
Query: 549 MVLFCKLTQYQKSKYLEFLHSDELMK-IRKGKRQVLYGIDI-LRKICNHPDLLD 600
++ C L++ Q+ Y +F+ + ++ G + I + LRK CNHP+L +
Sbjct: 834 HIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMSVLNIVMQLRKCCNHPNLFE 887
Score = 132 bits (333), Expect = 2e-30
Identities = 72/174 (41%), Positives = 110/174 (62%), Gaps = 8/174 (4%)
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGS 680
GK+Q + LL + H+ L+FTQ +MLD+LQ F+S+ ++ R+DGTT +
Sbjct: 1239 GKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHG-----YQYFRLDGTTGVEQ 1293
Query: 681 RQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQ 739
RQ+++++FN +P F+L+TR GG+G+NLTGA+ +I +D DWNP+ D QA++R RIGQ
Sbjct: 1294 RQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQ 1353
Query: 740 KREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPK-QKRFFKMND-LHDLF 791
R V+IYRL+ +IEE I + K+ L + + FFK +D + DLF
Sbjct: 1354 TRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLF 1407
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 145 bits (366), Expect = 3e-34
Identities = 86/273 (31%), Positives = 151/273 (54%), Gaps = 12/273 (4%)
Query: 533 RRVKSDVAKD-LPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRK 591
+R+K DV KD +P K E++L ++ QK Y + ++ + +K ++ + LR+
Sbjct: 325 KRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKISNVLMKLRQ 384
Query: 592 ICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLD 651
+C+HP LL + D +A SGK+Q++ ++++ QGH+ L++TQ + L
Sbjct: 385 VCSHPYLLPDFEPRFEDANEAFTKLLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLY 444
Query: 652 ILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINL 709
+L+++ ++K+ + R+DG + RQ +D+FN E + FLL+TR GG+GINL
Sbjct: 445 LLEDYFTFKN-----WNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINL 499
Query: 710 TGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLS 769
A+ +II+D DWNP D+QA R R+GQ +V IYRL+ G++EE++ K L
Sbjct: 500 ATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLE 559
Query: 770 NKILKDPKQKRFFKMNDLHDLFTLGGDNGYETE 802
+ ++ K+ ++L D+ G + E
Sbjct: 560 HLVV----GKQHLCQDELDDIIKYGSKELFSEE 588
Score = 60.8 bits (146), Expect = 1e-08
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 206 DDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANIS------------- 252
DDG+E+ L K+ ++ ++++ DI ++ + D N S
Sbjct: 154 DDGEEY-----LVKYKELSYRNSYWESESDISDFQNEIQRFKDINSSSRRDKYVENERNR 208
Query: 253 EDF----MVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLH 308
E+F + P + L YQ + +L + + I+ DEMGLGKTIQ IAFLA+L
Sbjct: 209 EEFKQFDLTPEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLF 268
Query: 309 HSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVI 344
P LVV P + ++ W EF TW P V+
Sbjct: 269 EENL--SPHLVVAPLSTIRNWEREFATWAPHMNVVM 302
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 144 bits (364), Expect = 5e-34
Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 29/283 (10%)
Query: 588 ILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSR 647
+LRK CNHP L++ + D SGK ++ ++L +GHK LLF+Q
Sbjct: 3 LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 62
Query: 648 QMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLG 706
MLDIL ++ L D F R+DG+ + R+ + FN +P +FL++TR GGLG
Sbjct: 63 SMLDILMDYC-----HLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 117
Query: 707 INLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQ 766
INLT A+ +II+D DWNP +D+QA++R RIGQ + V +YRL+ A +I++KI R K+
Sbjct: 118 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 177
Query: 767 FLSNKILKDPK----------QKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIK 816
L I+ K F +L +L ++ ++ +EI +
Sbjct: 178 KLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELL--------KSRDYEREIKGSREKVI 229
Query: 817 QNKTSE-----TDDFDKLSQISGVHKLEGFFNSKEQDEKQSTE 854
+K E +D D+++ + + G F E E S E
Sbjct: 230 SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPE 272
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 144 bits (364), Expect = 5e-34
Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 29/283 (10%)
Query: 588 ILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSR 647
+LRK CNHP L++ + D SGK ++ ++L +GHK LLF+Q
Sbjct: 566 LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 625
Query: 648 QMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLG 706
MLDIL ++ L D F R+DG+ + R+ + FN +P +FL++TR GGLG
Sbjct: 626 SMLDILMDYC-----HLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680
Query: 707 INLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQ 766
INLT A+ +II+D DWNP +D+QA++R RIGQ + V +YRL+ A +I++KI R K+
Sbjct: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
Query: 767 FLSNKILKDPK----------QKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIK 816
L I+ K F +L +L ++ ++ +EI +
Sbjct: 741 KLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELL--------KSRDYEREIKGSREKVI 792
Query: 817 QNKTSE-----TDDFDKLSQISGVHKLEGFFNSKEQDEKQSTE 854
+K E +D D+++ + + G F E E S E
Sbjct: 793 SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPE 835
Score = 141 bits (355), Expect = 6e-33
Identities = 94/296 (31%), Positives = 144/296 (47%), Gaps = 41/296 (13%)
Query: 268 YQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMK 327
YQ ++WL L++ G GI+ DEMGLGKT+Q IA +A L R + GP LV P + +
Sbjct: 226 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRGVPGPFLVCGPLSTLP 284
Query: 328 QWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
W EF + P ++ H GTQ E+++K
Sbjct: 285 NWMAEFKRFTPDIPTMLYH--------GTQ-----------------------EERQKLV 313
Query: 388 TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDI 447
++ RK ++ VIT I + AL + W Y I+DEGH+I+N +
Sbjct: 314 RNIYKRKGTLQIHPVVITSFEIAMR-------DRNALQHCYWKYLIVDEGHRIKNMKCRL 366
Query: 448 SLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN 507
K+ N+++L+GTP+QNNL+ELWSL +F+ P L F+ F I
Sbjct: 367 IRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETA 424
Query: 508 ASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKY 563
I + L +++P+LLRR+KSDVA ++P K E+V++ L++ Q+ Y
Sbjct: 425 EDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFY 480
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 144 bits (364), Expect = 5e-34
Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 29/283 (10%)
Query: 588 ILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSR 647
+LRK CNHP L++ + D SGK ++ ++L +GHK LLF+Q
Sbjct: 76 LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 135
Query: 648 QMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLG 706
MLDIL ++ L D F R+DG+ + R+ + FN +P +FL++TR GGLG
Sbjct: 136 SMLDILMDYC-----HLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 190
Query: 707 INLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQ 766
INLT A+ +II+D DWNP +D+QA++R RIGQ + V +YRL+ A +I++KI R K+
Sbjct: 191 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 250
Query: 767 FLSNKILKDPK----------QKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIK 816
L I+ K F +L +L ++ ++ +EI +
Sbjct: 251 KLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELL--------KSRDYEREIKGSREKVI 302
Query: 817 QNKTSE-----TDDFDKLSQISGVHKLEGFFNSKEQDEKQSTE 854
+K E +D D+++ + + G F E E S E
Sbjct: 303 SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPE 345
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 140 bits (353), Expect = 1e-32
Identities = 88/269 (32%), Positives = 147/269 (53%), Gaps = 27/269 (10%)
Query: 611 DADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPE------- 663
DAD SGKM ++ ++L + G K L+F+QS LD++++F+ E
Sbjct: 2008 DADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDK 2067
Query: 664 ----------LSDLKFLRMDGTTNIGSRQSLVDKFNNEPY---DVFLLTTRVGGLGINLT 710
L ++ + R+DG+T SR+ ++FN+E +F+++T+ G LGINL
Sbjct: 2068 PLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLV 2127
Query: 711 GANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSN 770
ANR+IIFD WNPS D+Q+ R +R GQ + V +YR + G++E+KIY RQ+ KQ LS
Sbjct: 2128 AANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSF 2187
Query: 771 KILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKL- 829
+++ + +R F MN+L +L+T D ++ N E K+ K + + ++
Sbjct: 2188 RVVDQQQVERHFTMNELTELYTFEPD---LLDDPNSEKKKKRDTPMLPKDTILAELLQIH 2244
Query: 830 -SQISGVHKLEGFFNSKEQDEKQSTEDDR 857
I G H+ + + KE++E TE++R
Sbjct: 2245 KEHIVGYHEHDSLLDHKEEEE--LTEEER 2271
Score = 119 bits (298), Expect = 2e-26
Identities = 105/383 (27%), Positives = 174/383 (45%), Gaps = 71/383 (18%)
Query: 265 LFPYQKTCVQWL----CELYQQ-----GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN- 314
L P+Q VQ++ CE ++ G G I+ MGLGKT+Q+++FL T+ KL+
Sbjct: 1560 LKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLDF 1619
Query: 315 GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
LVVCP W NEF W +E L+
Sbjct: 1620 STALVVCPLNTALNWMNEFEKW-----------------------QEGLK---------- 1646
Query: 375 FTYNDYEKKEKTRTSLESRKSVKK-LLEKVITDGHIIITTYVGLR--------------- 418
D EK E + + R + +L++ DG ++I Y R
Sbjct: 1647 ----DDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKE 1702
Query: 419 LHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLF 478
+ ++AL++ + + DEGH ++N S +S ++++ RIIL+GTP+QNNL E +
Sbjct: 1703 IFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMV 1762
Query: 479 DFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSD 538
+F+ LG++ F+ +F NPI G A+++ + V+ K A L ++++ + R+ +
Sbjct: 1763 NFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTA 1822
Query: 539 VAKDLPKKNEMVLFCKLTQYQKSKYLEFL-HSDELMKIRKGKR-----QVLYGIDILRKI 592
+ K LP K+E VL ++T Q Y +L H + +G R ++ +L +I
Sbjct: 1823 LTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSRI 1882
Query: 593 CNHPDLLDLK--RKKMNDYEDAD 613
HP L L K+ Y D D
Sbjct: 1883 WTHPWCLQLDYISKENKGYFDED 1905
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 140 bits (353), Expect = 1e-32
Identities = 88/269 (32%), Positives = 147/269 (53%), Gaps = 27/269 (10%)
Query: 611 DADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPE------- 663
DAD SGKM ++ ++L + G K L+F+QS LD++++F+ E
Sbjct: 1804 DADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDK 1863
Query: 664 ----------LSDLKFLRMDGTTNIGSRQSLVDKFNNEPY---DVFLLTTRVGGLGINLT 710
L ++ + R+DG+T SR+ ++FN+E +F+++T+ G LGINL
Sbjct: 1864 PLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLV 1923
Query: 711 GANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSN 770
ANR+IIFD WNPS D+Q+ R +R GQ + V +YR + G++E+KIY RQ+ KQ LS
Sbjct: 1924 AANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSF 1983
Query: 771 KILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKL- 829
+++ + +R F MN+L +L+T D ++ N E K+ K + + ++
Sbjct: 1984 RVVDQQQVERHFTMNELTELYTFEPD---LLDDPNSEKKKKRDTPMLPKDTILAELLQIH 2040
Query: 830 -SQISGVHKLEGFFNSKEQDEKQSTEDDR 857
I G H+ + + KE++E TE++R
Sbjct: 2041 KEHIVGYHEHDSLLDHKEEEE--LTEEER 2067
Score = 119 bits (298), Expect = 2e-26
Identities = 105/383 (27%), Positives = 174/383 (45%), Gaps = 71/383 (18%)
Query: 265 LFPYQKTCVQWL----CELYQQ-----GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN- 314
L P+Q VQ++ CE ++ G G I+ MGLGKT+Q+++FL T+ KL+
Sbjct: 1356 LKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLDF 1415
Query: 315 GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
LVVCP W NEF W +E L+
Sbjct: 1416 STALVVCPLNTALNWMNEFEKW-----------------------QEGLK---------- 1442
Query: 375 FTYNDYEKKEKTRTSLESRKSVKK-LLEKVITDGHIIITTYVGLR--------------- 418
D EK E + + R + +L++ DG ++I Y R
Sbjct: 1443 ----DDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKE 1498
Query: 419 LHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLF 478
+ ++AL++ + + DEGH ++N S +S ++++ RIIL+GTP+QNNL E +
Sbjct: 1499 IFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMV 1558
Query: 479 DFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSD 538
+F+ LG++ F+ +F NPI G A+++ + V+ K A L ++++ + R+ +
Sbjct: 1559 NFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTA 1618
Query: 539 VAKDLPKKNEMVLFCKLTQYQKSKYLEFL-HSDELMKIRKGKR-----QVLYGIDILRKI 592
+ K LP K+E VL ++T Q Y +L H + +G R ++ +L +I
Sbjct: 1619 LTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSRI 1678
Query: 593 CNHPDLLDLK--RKKMNDYEDAD 613
HP L L K+ Y D D
Sbjct: 1679 WTHPWCLQLDYISKENKGYFDED 1701
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 140 bits (353), Expect = 1e-32
Identities = 88/269 (32%), Positives = 147/269 (53%), Gaps = 27/269 (10%)
Query: 611 DADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPE------- 663
DAD SGKM ++ ++L + G K L+F+QS LD++++F+ E
Sbjct: 1970 DADAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKDK 2029
Query: 664 ----------LSDLKFLRMDGTTNIGSRQSLVDKFNNEPY---DVFLLTTRVGGLGINLT 710
L ++ + R+DG+T SR+ ++FN+E +F+++T+ G LGINL
Sbjct: 2030 PLIYKGEGKWLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLV 2089
Query: 711 GANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSN 770
ANR+IIFD WNPS D+Q+ R +R GQ + V +YR + G++E+KIY RQ+ KQ LS
Sbjct: 2090 AANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSF 2149
Query: 771 KILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQNKTSETDDFDKL- 829
+++ + +R F MN+L +L+T D ++ N E K+ K + + ++
Sbjct: 2150 RVVDQQQVERHFTMNELTELYTFEPD---LLDDPNSEKKKKRDTPMLPKDTILAELLQIH 2206
Query: 830 -SQISGVHKLEGFFNSKEQDEKQSTEDDR 857
I G H+ + + KE++E TE++R
Sbjct: 2207 KEHIVGYHEHDSLLDHKEEEE--LTEEER 2233
Score = 119 bits (298), Expect = 2e-26
Identities = 105/383 (27%), Positives = 174/383 (45%), Gaps = 71/383 (18%)
Query: 265 LFPYQKTCVQWL----CELYQQ-----GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN- 314
L P+Q VQ++ CE ++ G G I+ MGLGKT+Q+++FL T+ KL+
Sbjct: 1522 LKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLDF 1581
Query: 315 GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
LVVCP W NEF W +E L+
Sbjct: 1582 STALVVCPLNTALNWMNEFEKW-----------------------QEGLK---------- 1608
Query: 375 FTYNDYEKKEKTRTSLESRKSVKK-LLEKVITDGHIIITTYVGLR--------------- 418
D EK E + + R + +L++ DG ++I Y R
Sbjct: 1609 ----DDEKLEVSELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKE 1664
Query: 419 LHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLF 478
+ ++AL++ + + DEGH ++N S +S ++++ RIIL+GTP+QNNL E +
Sbjct: 1665 IFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMV 1724
Query: 479 DFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSD 538
+F+ LG++ F+ +F NPI G A+++ + V+ K A L ++++ + R+ +
Sbjct: 1725 NFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTA 1784
Query: 539 VAKDLPKKNEMVLFCKLTQYQKSKYLEFL-HSDELMKIRKGKR-----QVLYGIDILRKI 592
+ K LP K+E VL ++T Q Y +L H + +G R ++ +L +I
Sbjct: 1785 LTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNSEGGRGKAGAKLFQDFQMLSRI 1844
Query: 593 CNHPDLLDLK--RKKMNDYEDAD 613
HP L L K+ Y D D
Sbjct: 1845 WTHPWCLQLDYISKENKGYFDED 1867
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 131 bits (329), Expect = 6e-30
Identities = 107/385 (27%), Positives = 177/385 (45%), Gaps = 66/385 (17%)
Query: 292 MGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAG 351
MGLGKTIQ I FL + + + GP L++ P + + W EF TW V+ H
Sbjct: 1 MGLGKTIQSITFLYEILLTG-IRGPFLIIAPLSTIANWEREFRTW-TDINVVVYH----- 53
Query: 352 MNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIII 411
G+ I + +++ Y Y + + R + + II
Sbjct: 54 ---GSLISRQMIQQ-----------YEMYFRDSQGRIIRGAYRF------------QAII 87
Query: 412 TTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNL 471
TT+ + L + W I+DE H+++N + + K + +++++L+GTP+QN +
Sbjct: 88 TTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTV 147
Query: 472 TELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYL 531
EL+SL F+ P + + F Q+F G +Q L+ ++ P +
Sbjct: 148 EELFSLLHFLEPLRFPSESTFMQEF------GDLETEEQVQ---------KLQAILKPMM 192
Query: 532 LRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQ-----VLYGI 586
LRR+K DV K L K E ++ +LT QK KY + + KG Q ++ +
Sbjct: 193 LRRLKEDVEKKLAPKEETIIEVELTNIQK-KYYRAILEKNFSFLSKGAGQTNVPNLVNTM 251
Query: 587 DILRKICNHPDLLDLKRKKMNDYEDADYGNPARS-----------GKMQVVKQLLLLWHS 635
LRK CNHP L+ +K+ E D NPA S GK+ ++ +LL +
Sbjct: 252 MELRKCCNHPYLIKGAEEKILG-EFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKA 310
Query: 636 QGHKTLLFTQSRQMLDILQEFISYK 660
GHK L+F+Q + LDIL++++ +K
Sbjct: 311 GGHKVLIFSQMVRCLDILEDYLIHK 335
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 130 bits (328), Expect = 8e-30
Identities = 69/203 (33%), Positives = 116/203 (56%), Gaps = 20/203 (9%)
Query: 610 EDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKF 669
E+ + N S K+ ++ +LL + G K L+F+QS Q LD+++ F+S D + +F
Sbjct: 887 EERELNNVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLDVIEHFLSLVDSNTKNYEF 946
Query: 670 -----------------LRMDGTTNIGSRQSLVDKFNNEPY---DVFLLTTRVGGLGINL 709
R+DG+ ++ R+++ +FNN +FL++TR GGLGINL
Sbjct: 947 EGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINL 1006
Query: 710 TGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLS 769
ANR++IFD WNPS D Q+ R +R GQ + IYRL+ G++E+K+Y RQ+ KQ +
Sbjct: 1007 VAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATA 1066
Query: 770 NKILKDPKQKRFFKMNDLHDLFT 792
+++ + + R + DL +L++
Sbjct: 1067 KRVIDEQQISRHYNQTDLMELYS 1089
Score = 115 bits (289), Expect = 3e-25
Identities = 92/358 (25%), Positives = 163/358 (44%), Gaps = 40/358 (11%)
Query: 272 CVQWLCELYQQ-GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGP--VLVVCPATVMKQ 328
C + L E ++ G G I+ MGLGKT+Q++ TL + + G VL++ P + +
Sbjct: 470 CFETLKESQEKPGSGCILAHCMGLGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNN 529
Query: 329 WCNEFHTW--WPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKT 386
W EF +W + + ++ I +K T+I +L + Y+ Y
Sbjct: 530 WAREFTSWMKFANRNDIEVYDISRYKDKPTRI--FKLNEWFNEGGVCILGYDMYRILANE 587
Query: 387 RTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSD 446
+ +K ++L++ ++ G ++ + DEGH ++N +
Sbjct: 588 KAKGLRKKQREQLMQALVDPGPDLV---------------------VCDEGHLLKNEKTS 626
Query: 447 ISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
IS +++T+ RI+L+GTP+QNNL E + + FV P LGT + +F NPI G Y
Sbjct: 627 ISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTYKEYMNRFVNPITNGQYT 686
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
+++ ++ + L L+ + RR S +A LP K+E V++ L++ Q+ Y +
Sbjct: 687 DSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYY 746
Query: 567 LHSDELMK----IRKGKRQVLYGIDILRKICNHP-------DLLDLKRKKMNDYEDAD 613
+ + + KG R + LR+I HP D + KR ND D +
Sbjct: 747 MTTHREQSGGDVVGKGAR-LFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDME 803
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 129 bits (325), Expect = 2e-29
Identities = 136/518 (26%), Positives = 219/518 (42%), Gaps = 53/518 (10%)
Query: 285 GGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTW--WPPFRA 342
G I+ G GKT I FL PV ++ PA+++ W EF W PF
Sbjct: 36 GCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPV-IIAPASLLLTWAEEFKKWNISIPFHN 94
Query: 343 V---------------ILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTR 387
+ +L A +I ++ + + + +YN YEK +
Sbjct: 95 LSSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVK 154
Query: 388 TSLESRKSVKKLL-EKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSD 446
+ K V+++ +K + D +L R G +LDE H RN S
Sbjct: 155 DEDKKTKMVREVKPDKELDD--------------IREILMGRPGLLVLDEAHTPRNQRSC 200
Query: 447 ISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYA 506
I T +++TQ RI+LSGTP QNN EL ++ P L L ++ + G
Sbjct: 201 IWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKK 260
Query: 507 NASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEF 566
N N G + L+ ++ P++ S + LP E V+ + Q+
Sbjct: 261 NLGNEINNRGIE---ELKAVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQR----RV 313
Query: 567 LHSDELMKIRKGKRQVLYGIDILRKICNHPDLLD---LKRKKMNDYEDADYG-------N 616
L S E+ RK K V L + HP L+ + K+ ++A +
Sbjct: 314 LESIEVTHNRKTKN-VFETEHKLSLVSVHPSLVSRCKISEKERLSIDEALLAQLKKVRLD 372
Query: 617 PARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTT 676
P +S K + + + + L K L+F+Q L ++ + + + + L M G
Sbjct: 373 PNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKL 432
Query: 677 NIGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
RQ+L+++FN+ VFL +T+ GI+L GA+R+I+ D WNP+ + QA RA
Sbjct: 433 EQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRA 492
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKI 772
+RIGQKR V Y L+ G+ E Y +Q K +S +
Sbjct: 493 YRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELV 530
>7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1534
Score = 129 bits (325), Expect = 2e-29
Identities = 99/349 (28%), Positives = 150/349 (42%), Gaps = 68/349 (19%)
Query: 283 GCGGIIGDEMGLGKTIQIIAF--LATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPF 340
G G I+ MGLGKT+Q+++F + H S K VL V P ++ W +EF+ W
Sbjct: 411 GFGCILAHSMGLGKTLQVVSFCDIFLRHTSAKT---VLCVMPINTLQNWLSEFNMW---- 463
Query: 341 RAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLL 400
IP + + N+ F ND +K R K++
Sbjct: 464 -----------------IPRYSTDSNVRPRNFDIFVLNDQQKTLTARA---------KVI 497
Query: 401 EKVITDGHIIITTYVGLRLHS------------------------------EALLNVRWG 430
+ DG +++ Y RL + EAL+
Sbjct: 498 LNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALVKPGPD 557
Query: 431 YAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLP 490
I DEGH+I+N + ISL K+++T+ RI+L+G P+QNNL E W + DFV P LGT
Sbjct: 558 LVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNYLGTRT 617
Query: 491 VFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMV 550
F F PI G +++ +K A L L+ ++ RR + + LP+K E V
Sbjct: 618 EFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQRRSHTVLQLTLPQKYEYV 677
Query: 551 LFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLL 599
+ K+T +Q+ Y F+ + K L + KI NHPD+L
Sbjct: 678 ILVKMTAFQRKLYDTFMTD---VVRTKAFPNPLKAFAVCCKIWNHPDVL 723
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 126 bits (316), Expect = 2e-28
Identities = 109/381 (28%), Positives = 169/381 (43%), Gaps = 39/381 (10%)
Query: 283 GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPF-- 340
G G I+ MGLGKTIQ+I F + K VLV+ P ++ W +E+ W P F
Sbjct: 283 GFGCILAHSMGLGKTIQVITFSEIFLRATKAK-KVLVIVPINTIQNWYSEYDKWIPKFSD 341
Query: 341 -----RAVILHSIGAGMNKGTQ----IPEEELEKMLMTSNYGTF------TYNDYEKKEK 385
R+ + +G G+ Q I + + +M Y F T +KK +
Sbjct: 342 TGDRIRSFEVFLLGDGVKTFDQRVNLIEQWDQTGGVMLVGYDMFRLLIKMTLPKKQKKGR 401
Query: 386 TRTSLESRKSV--------KKLLEKVI-------TDGHIIITTYVGLRLHSEALLNVRWG 430
+ +L S +KL ++ + + G + Y +R ALL
Sbjct: 402 PKLNLSGISSGFSKDSSEDQKLRDEELEFETGFTSGGRVRQEAYSLIR---SALLEPGPD 458
Query: 431 YAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLP 490
+ DEGHKI+N ++IS+T + T+ RI+L+G P+QNNL E + + DFV P LGT
Sbjct: 459 LVVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPKYLGTRK 518
Query: 491 VFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMV 550
F +F PI G ++S VK + L +L+ ++ RR + K LP+ E V
Sbjct: 519 SFIDRFEKPIKNGQCVDSSPDDVKIALQRTHVLVELVKGFVQRRTHHLLKKILPESKEYV 578
Query: 551 LFCKLTQYQKSKYLEFL--HSDELMKIRKGKRQVLYGIDILRKICNHPDLL-DLKRKKMN 607
L + +Q Q+ Y F+ +E+ L KI NHPD+L L +K
Sbjct: 579 LLLRKSQIQRQLYRNFVLWAKNEIAANNDAVFNPLMAFSACSKIWNHPDILYRLVEQKKR 638
Query: 608 DYEDADYGNPARSGKMQVVKQ 628
ED + ++Q +Q
Sbjct: 639 AEEDKKRVEQMKFAQLQQQQQ 659
Score = 114 bits (286), Expect = 6e-25
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 637 GHKTLLFTQSRQMLDILQEFISYKDPELSD---------LKFLRMDGTTNIGSRQSLVDK 687
G K L+F+Q+ LD+L+E + + D +LR+DGTT+ R+ L+++
Sbjct: 793 GEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLINR 852
Query: 688 FNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIY 746
FN+EP +FL++TR G LGINL ANR II D WNP D QA R +R GQ+++ +Y
Sbjct: 853 FNSEPGLSLFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFVY 912
Query: 747 RLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDL 790
RL++ S+E I++RQI K L +++ D + +L L
Sbjct: 913 RLIMDNSMERSIFNRQISKHGLQQRVVDDAQVDANISQKELETL 956
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 125 bits (315), Expect = 3e-28
Identities = 146/574 (25%), Positives = 239/574 (41%), Gaps = 108/574 (18%)
Query: 252 SEDFMVPGDIFPLLFPYQKTCVQWLCELYQQG---CGGIIGDEMGLGKTIQIIAF----- 303
+E + PG + L +QK + W+ + ++ GGI+ D+ GLGKTI I+
Sbjct: 40 TEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILLQK 99
Query: 304 LATLHHSRKLNGP----VLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKG---T 356
L + RK G L+VCPA+V+KQW E + H + ++ G T
Sbjct: 100 LKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKE-----KVSDEHKLSVLVHHGSHRT 154
Query: 357 QIPEEELEKMLMTSNYGTFTYNDYEKKEKTR-TSLESRKSVKKLLEKVITDGHIIITTYV 415
+ P E ++ + Y T + R S+ R+S+ DG +I +V
Sbjct: 155 KDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESL---------DGSSLIQPHV 205
Query: 416 GLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELW 475
G AL VRW +LDE H I+N + I+ C L+ + R L+GTPI+N + +L+
Sbjct: 206 G------ALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLY 259
Query: 476 SLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRV 535
S F F+ F Q+ PI+ + GYK L+ ++ +LRR
Sbjct: 260 SYFRFLRYHPYAMCNSFHQRIKAPIDK---------KPLHGYK---KLQAILRGIMLRRT 307
Query: 536 KS----------------DVAKDLPKKNEM----VLFCKLTQYQKSKYLE--FLHSDELM 573
K + A D M V+ +L Q L + HSD
Sbjct: 308 KEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTR 367
Query: 574 KIRKGKR-----QVLYGIDILR------KICNHP--DLLDLKRKKMNDYEDADYGNPARS 620
K+ G R ++ +D+L+ +C+ P D + + YE +
Sbjct: 368 KMSDGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECVSVNINGDN 427
Query: 621 GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSD----------LKFL 670
+ HSQ ++FT+S + Y DPE + ++
Sbjct: 428 NTCPALN-----CHSQLKHDVVFTESA----VRSCINDYDDPEDKNALVASRRVYFIENP 478
Query: 671 RMDGTTNIGSRQSLVDKFNNEPYDV------FLLTTRVGGLGINLTGANRIIIFDPDWNP 724
D +++ R N+ + L++ + G LG+N+ A+ +I+ D WNP
Sbjct: 479 SCDRDSSVACRARQSRHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNP 538
Query: 725 STDMQARERAWRIGQKREVTIYRLMIAGSIEEKI 758
+T+ QA +RA RIGQ R VT+ R+ I ++EE+I
Sbjct: 539 TTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERI 572
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 125 bits (313), Expect = 4e-28
Identities = 98/351 (27%), Positives = 151/351 (42%), Gaps = 55/351 (15%)
Query: 252 SEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSR 311
S F P ++ L YQK + WL +LY++ GI+ DE GLGKT+QIIAF A L +
Sbjct: 1042 SVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNE 1101
Query: 312 KLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSN 371
GP LVV + + +W E W P + IL IG+
Sbjct: 1102 GNWGPHLVVVRSCNILKWELELKRWCPGLK--ILSYIGSHR------------------- 1140
Query: 372 YGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGY 431
E K K + E H+ IT+Y A VRW
Sbjct: 1141 ---------ELKAKRQEWAEPNSF------------HVCITSYTQFFRGLTAFTRVRWKC 1179
Query: 432 AILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPV 491
++DE +++ L++Q R++L +P+ N ELW++ F+ PG +
Sbjct: 1180 LVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPLHNTFLELWTMVHFLVPG------I 1233
Query: 492 FQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVL 551
+ ++P+ + +K + L + P++LRR K DV K L KK E VL
Sbjct: 1234 SRPYLSSPLRAPSEESQDYY-----HKVVIRLHRVTQPFILRRTKRDVEKQLTKKYEHVL 1288
Query: 552 FCKLTQYQKSKYLEFLHSDELMKIRKGKR--QVLYGIDILRKICNHPDLLD 600
C+L+ QK+ Y + + + K VL + L++ICNHP L++
Sbjct: 1289 KCRLSNRQKALYEDVILQPGTQEALKSGHFVNVLSILVRLQRICNHPGLVE 1339
Score = 80.9 bits (198), Expect = 1e-14
Identities = 50/141 (35%), Positives = 82/141 (57%), Gaps = 8/141 (5%)
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
SGK++ + LL S+G + L+ +Q MLDIL+ F+++ L ++R+D +
Sbjct: 1861 SGKLEALAILLQKLKSEGRRVLILSQMILMLDILEMFLNFHY-----LTYVRIDENASSE 1915
Query: 680 SRQSLVDKFNNEPYDVF--LLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRI 737
RQ L+ FN + +F +L+T GINL A+ ++ +D D NP D +A+E RI
Sbjct: 1916 QRQELMRSFNRDRR-IFCAILSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRI 1974
Query: 738 GQKREVTIYRLMIAGSIEEKI 758
G+ +++ IYRL+ SIEEK+
Sbjct: 1975 GRCKDIHIYRLVSGNSIEEKL 1995
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 121 bits (304), Expect = 5e-27
Identities = 146/636 (22%), Positives = 251/636 (38%), Gaps = 116/636 (18%)
Query: 218 KKWVANRSK-----DRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTC 272
+KW + K D D+D Q +A I+E P D+ L YQK
Sbjct: 96 RKWQIMKEKVQMTEDDDFDEQ--------------NAVIAEAAEQPLDLIIPLLKYQKEF 141
Query: 273 VQWLC-ELYQQGCGGIIGDEMGLGKTIQIIAFLATLHH-----SRKLNGPVLVVCPATVM 326
+ W + GGI+ DEMG+GKTIQ I+ + SR+ G LV+ P +
Sbjct: 142 LAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHTLVLVPPVAL 201
Query: 327 KQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKT 386
QW +E P +L G +K Q +L N+Y K E
Sbjct: 202 SQWLDEISRLTSPGSTRVLQYHGPKRDKNVQ----KLMNYDFVLTTSPIVENEYRKDEGV 257
Query: 387 RTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSD 446
++ LHS ++W I+DE H I+N S
Sbjct: 258 DETMSP--------------------------LHS-----IKWNRIIVDEAHDIKNRSSR 286
Query: 447 ISLTCKQLKTQNRIILSGTPIQNNLTELW-----SLFDFVYPGKLG-----TLPVFQQQF 496
+ L+ R LSGTP+QN++ EL+ S +F Y T F +
Sbjct: 287 TAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNV 346
Query: 497 ANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRR------VKSDVAKDLPKKNEMV 550
+GG +I V+ AV + + + +R V++D + L K ++
Sbjct: 347 TVKFLIGGNILPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTT 406
Query: 551 -------------------LFCKLTQYQKSKYLEFLHSDE-----LMKIRKGKRQVLYGI 586
L +L Q YL S L+ K +++ +G
Sbjct: 407 FDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGH 466
Query: 587 DILRKICNHPDLLDLKRKKMNDYEDADYGNPAR------SGKMQVVKQLL--LLWHSQGH 638
D + + K+ + + N S K++ +++ + ++
Sbjct: 467 DPSKDYFVTSSEHQASKTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSA 526
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFL 697
K ++F+Q LD++ + S + +++ G+ + ++ + + F EP V L
Sbjct: 527 KAIVFSQFTSFLDLISYALGK-----SGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLL 581
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
++ + GG+ +NLT A+ + + DP WNP+ + QA++R RIGQ + V + R ++ ++EEK
Sbjct: 582 MSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEK 641
Query: 758 IYHRQIFKQFLSNKILKDPKQKRFFKM--NDLHDLF 791
I Q K+ L L D ++ K+ +D+ LF
Sbjct: 642 ILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSLF 677
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 121 bits (303), Expect = 6e-27
Identities = 101/393 (25%), Positives = 166/393 (41%), Gaps = 83/393 (21%)
Query: 222 ANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQ 281
A + + + + + E +KP P+ ++ + M G L YQ + WL +Y
Sbjct: 496 AKKKEKEEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGT----LKGYQIKGMTWLANIYD 551
Query: 282 QGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFR 341
QG GI+ DEMGLGKT+Q IAFL + + P V P W P
Sbjct: 552 QGISGILADEMGLGKTVQSIAFLCHIAEHYGVFVPDFKVVP------------YWGSPAE 599
Query: 342 AVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLE 401
IL +++K L +R +
Sbjct: 600 RKILRQF-------------------------------WDQKH-----LHTRDA---SFH 620
Query: 402 KVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRII 461
VIT ++++ Y + ++W Y +LDE I++ S +NR++
Sbjct: 621 VVITSYQLVVSDY-------KYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLL 673
Query: 462 LSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGY--KC 519
LSGTPIQN++ ELW+L F+ P + F + F+ I S+ + KTG K
Sbjct: 674 LSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIE-------SHAENKTGIDEKQ 726
Query: 520 AVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKY---LEFLHSDELMKIR 576
L ++ P++LRR+K DV +L K E++++C LT QK Y + + ++L+ +
Sbjct: 727 ISRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLT 786
Query: 577 KGK---------RQVLYGIDILRKICNHPDLLD 600
G ++ + RK+CNHP+L +
Sbjct: 787 SGSTTTSSSSSASNLMNLVMQFRKVCNHPELFE 819
Score = 68.9 bits (167), Expect = 4e-11
Identities = 35/97 (36%), Positives = 63/97 (64%), Gaps = 6/97 (6%)
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
+GK+ V+ LL + GH+ L+++Q +M+D+L+E++ ++ +++R+DG++ I
Sbjct: 1086 AGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKH-----RYMRLDGSSKIS 1140
Query: 680 SRQSLVDKFNNE-PYDVFLLTTRVGGLGINLTGANRI 715
+R+ +V F VFLL+TR GGLGINLT A+ +
Sbjct: 1141 ARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTL 1177
>At2g21450 [L] KOG0390 DNA repair protein SNF2 family
Length = 816
Score = 120 bits (301), Expect = 1e-26
Identities = 141/554 (25%), Positives = 230/554 (41%), Gaps = 102/554 (18%)
Query: 267 PYQKTCVQWLCE--LYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
P+Q ++LC + G I+ G GKT +I+FL + P LVV P
Sbjct: 267 PHQTEGFRFLCNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARP-LVVLPKG 325
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+++ W EF W E+EK+ + Y
Sbjct: 326 IIESWKREFTLW-------------------------EVEKIPLLDFYSV---------- 350
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYV---------GLRLHSE---ALLNVRWGYA 432
ESRK K+L + I + I+ Y SE +L +
Sbjct: 351 ----KAESRKQQLKVLGQWIKERSILFLGYQQFTRIICDDNFEAASEDCKLILLEKPTLL 406
Query: 433 ILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKL---GTL 489
ILDEGH RN ++ + + ++KT+ +++L+GT QNN+ E++++ D V P L GT
Sbjct: 407 ILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVEEVFNILDLVRPKFLKRPGTR 466
Query: 490 PVFQQQFANP-INMGGYANASNIQVKTGYKCAVAL---------------RDL--ISPYL 531
+ + + I G N S+ ++ + AV L +DL ++ +
Sbjct: 467 EIVSRIMSKAEIPRGKQVNQSSSSIEGTFFAAVELTLQRSTNFSAKASLIKDLREMTRNI 526
Query: 532 LRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRK 591
L K+D + LP +E + L+ Q+ DE+ +RK ++ I +
Sbjct: 527 LHYHKADFSGLLPGLSEFTVMLNLSSIQR---------DEVKGLRK--MELFKQISLGAA 575
Query: 592 ICNHPDLLDLKRKKMNDYEDADYGNPA--------------RSG-KMQVVKQLLLLWHSQ 636
+ HP L + ++ E N R G KM+ LL L S
Sbjct: 576 LYIHPKLKSFLEENPSNGEKGFSDNNTTVMKLDKMLKKINVRDGVKMKFFLNLLALCEST 635
Query: 637 GHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNE-PYDV 695
G K L+F+Q + L+ +S + + G ++ R+ +++FNN V
Sbjct: 636 GEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMERFNNSLEAKV 695
Query: 696 FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIE 755
F + + G GI+L GA+R++I D NPS QA RA+R GQKR+V Y+L+ A S E
Sbjct: 696 FFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPE 755
Query: 756 EKIYHRQIFKQFLS 769
E+ Y K+ +S
Sbjct: 756 EENYETCTRKEMMS 769
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 119 bits (298), Expect = 2e-26
Identities = 95/359 (26%), Positives = 154/359 (42%), Gaps = 40/359 (11%)
Query: 283 GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRA 342
G G I+ MGLGKT+Q+I+F+ L VL + P ++ W EF+ W PP A
Sbjct: 190 GFGCILAHSMGLGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLPPPEA 248
Query: 343 VILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFT-------------------YNDYEKK 383
+ NK ++ + ++ + T Y Y
Sbjct: 249 L------PADNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLL 302
Query: 384 EKTRTSLESR-KSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRN 442
++ R K KK VI D R +AL I DEGH+I+N
Sbjct: 303 TLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKN 362
Query: 443 PDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINM 502
+ S K ++++ R++L+G P+QNNL E W + DFV P LGT F F PI
Sbjct: 363 CQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILN 422
Query: 503 GGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSK 562
G +++ V+ + L L+ ++ RR + + LP K E V+ +L++ Q+
Sbjct: 423 GQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDL 482
Query: 563 YLEFLHSDELMKIRKGKRQVLYGIDILRKIC------NHPDLL--DLKRKKMNDYEDAD 613
Y +F+ + R G++ L+ C NHPD+L L+++ + + +D D
Sbjct: 483 YTQFMD-----RFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLD 536
Score = 114 bits (286), Expect = 6e-25
Identities = 66/194 (34%), Positives = 112/194 (57%), Gaps = 22/194 (11%)
Query: 619 RSGKMQVVKQLLLLWH------SQGHKTLLFTQSRQMLDILQEFISYKDPE--------- 663
++G ++ +++LL+H G K L+F+QS L +++EF+ ++
Sbjct: 605 QTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQG 664
Query: 664 ----LSDLKFLRMDGTTNIGSRQSLVDKFN---NEPYDVFLLTTRVGGLGINLTGANRII 716
+ ++ + R+DG+T R+ L+++FN N +FLL+TR G LG+NL GANR++
Sbjct: 665 AQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVV 724
Query: 717 IFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDP 776
+FD WNP D QA R +R GQK+ IYRL+ ++E+KIY RQI KQ +S++++ D
Sbjct: 725 VFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL 784
Query: 777 KQKRFFKMNDLHDL 790
F ++ +L
Sbjct: 785 NPMLNFTRKEVENL 798
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 117 bits (294), Expect = 7e-26
Identities = 85/315 (26%), Positives = 131/315 (40%), Gaps = 49/315 (15%)
Query: 207 DGDEHHYQQRLKKWVANRS--KDRDYDNQPDIPEWLKPHPKISDANISE----------- 253
D DE +RL A + K R++ D P+ SD N E
Sbjct: 770 DSDEEEDIRRLAVESAQEAVQKAREHSQLFDANRQQSPNNSSSDMNEGEMNFQNPTLVNA 829
Query: 254 -DFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRK 312
+ P + L YQ + WL LY+QG GI+ DEMGLGKT+Q I+ +A L +
Sbjct: 830 FEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHN 889
Query: 313 LNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNY 372
+ GP LV+ PA+ + W E + P + +
Sbjct: 890 IWGPFLVIAPASTLHNWQQEITRFVPKLKCI----------------------------- 920
Query: 373 GTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYA 432
Y K R L K + + H+++T+Y + L ++ +V+W Y
Sbjct: 921 ------PYWGSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYFQSVKWQYM 974
Query: 433 ILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVF 492
ILDE I++ S + K +NR++L+GTPIQN + ELW+L F+ P + F
Sbjct: 975 ILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEF 1034
Query: 493 QQQFANPINMGGYAN 507
+ F+ I +N
Sbjct: 1035 SEWFSKDIESHAQSN 1049
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 115 bits (289), Expect = 3e-25
Identities = 64/162 (39%), Positives = 96/162 (58%), Gaps = 7/162 (4%)
Query: 620 SGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIG 679
+GK+ ++ +LL + GHK L+F+Q + LDIL++++ + + R+DG
Sbjct: 5 AGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRR-----YTYERIDGRVRGN 59
Query: 680 SRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRI 737
RQ+ +D+F D VFLL TR GGLGINLT A+ IIFD DWNP D+QA+ R RI
Sbjct: 60 LRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 119
Query: 738 GQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQK 779
GQ + V +YRL+ S E +++ + K L +L+D +K
Sbjct: 120 GQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRK 161
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 115 bits (288), Expect = 4e-25
Identities = 139/562 (24%), Positives = 228/562 (39%), Gaps = 83/562 (14%)
Query: 257 VPGDIFPLLFPYQK-------------TCVQWLCELYQQGCGG-IIGDEMGLGKTIQIIA 302
VPG I L+P+Q+ T + L + +G GG II + G GKT +
Sbjct: 570 VPG-IKDTLYPHQQEGFEFIWKNLAGTTKINELNSVGVKGSGGCIISHKAGTGKTRLTVV 628
Query: 303 FLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEE 362
FL + + R N +V+ PAT+M+ W +E W IP
Sbjct: 629 FLQS-YLKRFPNSHPMVIAPATLMRTWEDEVRKW------------------NVNIPFYN 669
Query: 363 LEKMLMTSNYGTFTYNDYE-----KKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGL 417
+ + ++ Y D E + + S+ K V +K I + +
Sbjct: 670 MNSLQLSG------YEDAEAVSRLEGNRHHNSIRMVKLVSWWKQKSILGISYPLYEKLAA 723
Query: 418 RLHSEALLNVRW------GYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNL 471
++E + R G +LDEGH RN S I +++T+ RI LSGT QNN
Sbjct: 724 NKNTEGMQVFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNF 783
Query: 472 TELWSLFDFVYPGKLGTLPVFQQQFANPINMG--GYANASNIQVKTGYKCAVALRDLISP 529
EL ++ P T+ + + G G N N V L+ +I+
Sbjct: 784 KELSNVLCLARPADKDTISSRIHELSKCSQEGEHGRVNEENR--------IVDLKAMIAH 835
Query: 530 YLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDIL 589
++ + + + LP + V+ +Q+ K L+ + + + + K + L
Sbjct: 836 FVHVHEGTILQESLPGLRDCVVVLN-PPFQQKKILDRIDTSQNTFEFEHKLSAVSVHPSL 894
Query: 590 RKICNHPDLLDL----------KRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHK 639
CN DL KR ++ YE+ K + + + + + K
Sbjct: 895 YLCCNPTKKEDLVIGPATLGTLKRLRLK-YEEGV--------KTKFLIDFIRISGTVKEK 945
Query: 640 TLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN--NEPYDVFL 697
L+++Q L ++ E + + + L M G RQ ++D FN + V L
Sbjct: 946 VLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLL 1005
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
+T+ GI+L GA+R++I D WNPS + QA RA+RIGQKR V IY LM+ + E
Sbjct: 1006 ASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWN 1065
Query: 758 IYHRQIFKQFLSNKILKDPKQK 779
Y +Q K +S + +K
Sbjct: 1066 KYCKQSEKHRISELVFSSTNEK 1087
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 114 bits (286), Expect = 6e-25
Identities = 137/553 (24%), Positives = 229/553 (40%), Gaps = 87/553 (15%)
Query: 80 IEDVENYELKPLEQDIAEIKERIKGLKETNEADTTTKSTERQPGESERDFLLRTGKITGF 139
I D E+ + + E + ++++E++ K + +S+E SE G IT
Sbjct: 314 ISDSEDEKDQKSESEASDVEEKVSKKKAKKQ-----ESSESGSDSSE-------GSITVN 361
Query: 140 GNSVNFKVEDEEESKSILLAERQMLKNIXXXXXXXXXXXXFISDSEELLNESAGKLDVIR 199
S K + E++ K I++ ++ K D+E E +L+ +
Sbjct: 362 RKSKK-KEKPEKKKKGIIMDSSKLQKETI--------------DAERAEKERRKRLEKKQ 406
Query: 200 KPAEAI--DDGDEHHYQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMV 257
K I ++G++ L + + S R + L P D + V
Sbjct: 407 KEFNGIVLEEGED------LTEMLTGTSSQRKLKSVV-----LDPDSSTVDEESKKPVEV 455
Query: 258 PGDIFPLLFPYQKTCVQWLCE--------LYQQGCGGIIGDEMGLGKTIQIIAFLATLHH 309
+ +L P+Q +Q++ + L +G GGI+ MGLGKT+Q+I FL T+
Sbjct: 456 HNSLVRILKPHQAHGIQFMYDCAFESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVLM 515
Query: 310 SRKLNGP---VLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKM 366
K+ VLVV P V+ W EF W L +I + E+ +
Sbjct: 516 HEKIGEKCKRVLVVVPKNVIINWFKEFQKWLVD-NDEELDTIDVNELDSYKTIEDRRRAL 574
Query: 367 ----------LMTSNYGTF---TYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITT 413
+M Y F T D KK+K K+ + LEK D
Sbjct: 575 KAWHSSKTPSVMIIGYDLFRILTVEDDPKKKKP-------KNRNRRLEKAKED------- 620
Query: 414 YVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTE 473
+ L N + DE HK++N DS +S ++ T+ RI L+GTP+QNNL E
Sbjct: 621 ------FRKYLQNPGPDMVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLME 674
Query: 474 LWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLR 533
+ +FV PG LGT F +F N IN G +AS ++V + L D + + R
Sbjct: 675 YHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLEVSFMKRRCHVLYDHLKKCVDR 734
Query: 534 RVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKIC 593
+ + + +P K E V+ + T+ Q + Y FL ++++ +++L + +I
Sbjct: 735 KDYRVLTEAIPPKQEYVINVRQTERQCALYNAFL--NDIVGDSGLSKRLLPDYHMFSRIW 792
Query: 594 NHPDLLDLKRKKM 606
HP L L ++M
Sbjct: 793 THPYQLVLHEQRM 805
Score = 105 bits (261), Expect = 5e-22
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 24/206 (11%)
Query: 610 EDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPE------ 663
++ D + A S K+ ++ +++ G K L+F+QS + L +++ + Y
Sbjct: 936 KEEDRDDFALSNKLILLVEIIKKCEEIGDKLLVFSQSLESLTLIKRMLEYMAGTGQWFAD 995
Query: 664 ---------------LSDLKFLRMDGTTNIGSRQSLVDKFN---NEPYDVFLLTTRVGGL 705
L ++ +DG+ G R ++ FN N + L++TR G L
Sbjct: 996 GHEALNAEGEETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSL 1055
Query: 706 GINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFK 765
G N+ ANR+IIFD WNPS D Q+ R +R GQ + V IYR + G++EE+IY RQ+ K
Sbjct: 1056 GTNMVAANRVIIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTK 1115
Query: 766 QFLSNKILKDPKQKRFFKMNDLHDLF 791
+ S +++ + + +R + NDL +L+
Sbjct: 1116 ESTSMRVVDEAQIQRHYLGNDLTELY 1141
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 110 bits (275), Expect = 1e-23
Identities = 109/461 (23%), Positives = 194/461 (41%), Gaps = 62/461 (13%)
Query: 59 SLLSKRYNASRISVRAKLKEQIEDVENYELKPLEQDIAEIKERIKGLKETNEADTTTKST 118
S +SK + S E+ +N E +E + +KE + +K+ N+ + T
Sbjct: 1803 SAVSKAEGSDEKSTDDSNPEEATTEKNKESLEIEGEKERVKEGEESVKKEND-EKTEADM 1861
Query: 119 ERQPGESERDFLLRTGKITGFGNSVNFKVEDEEESKSILLAERQMLKNIXXXXXXXXXXX 178
E +P D K F + ++ + EEE +L +R++ I
Sbjct: 1862 ENKPEPVFIDVEEYFVKYRNF-SYLHCEWRTEEE---LLKGDRRVAAKIRRFQQKQSQQL 1917
Query: 179 XFISDSE-ELLNESAGKLDVIRKPAEAIDDGDEHHYQQRLKKWVANRSKD------RDYD 231
+ E E N+ ++D + + D+ + L KW + +D D D
Sbjct: 1918 NIFENIEDEPFNQDFTEVDRVLDMSVHTDETSGETTKHYLVKWKSLPYEDCTWELEEDVD 1977
Query: 232 NQ-----------PDIPEWL---KPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLC 277
N P EW +PHP++ G+ L PYQ + WL
Sbjct: 1978 NDKIEQYLRFNKIPQRSEWKSKKRPHPELWKKLEKTPVYKGGNS---LRPYQLEGLNWLK 2034
Query: 278 ELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWW 337
+ I+ DEMGLGKTIQ + F+ +++ + GP LV+ P + + W EF W
Sbjct: 2035 FSWYNTHNCILADEMGLGKTIQSLTFVHSVYEYG-IRGPFLVIAPLSTIPNWQREFEGW- 2092
Query: 338 PPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVK 397
V+ H G+ ++ ++ DYE KT + ++ +K
Sbjct: 2093 TDMNVVVYH--------GSVTSKQMIQ--------------DYEYYYKTESGKVLKEPIK 2130
Query: 398 KLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQ 457
+IT +I+T Y+ L+ + W ++DE H+++N + + +QL +
Sbjct: 2131 --FNVLITTFEMIVTDYMDLKAFN-------WRLCVIDEAHRLKNRNCKLLEGLRQLNLE 2181
Query: 458 NRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFAN 498
+R++LSGTP+QNN++EL+SL +F+ P + + F +F +
Sbjct: 2182 HRVLLSGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEFGS 2222
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 110 bits (274), Expect = 1e-23
Identities = 136/536 (25%), Positives = 223/536 (41%), Gaps = 72/536 (13%)
Query: 267 PYQKTCVQWLCE-LYQQGCGG-IIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
P+Q Q+LC L GG I+ G GKT II+F+ + P LVV P
Sbjct: 352 PHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKP-LVVLPKG 410
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
++ W EF W ++E + + Y N ++
Sbjct: 411 ILPTWKKEFVRW-------------------------QVEDIPLLDFYSAKAENRAQQLS 445
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
+ +E + + ++ T I+ E LL V ILDEGH RN D
Sbjct: 446 ILKQWMEKKSILFLGYQQFST---IVCDDTTDSLSCQEILLKVP-SILILDEGHTPRNED 501
Query: 445 SDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPG--KLGTLPVFQQQFA--NPI 500
+++ + Q++T +++LSGT QN++ E++++ + V P KL T ++ P
Sbjct: 502 TNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYTPC 561
Query: 501 NMGGYANASNIQVKTGYKCAV---------------ALRDL--ISPYLLRRVKSDVAKDL 543
++ G SN + + + V ++DL ++ +L K D +L
Sbjct: 562 DVRGRLTGSNSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDEL 621
Query: 544 PKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLKR 603
P + + L+ Q + E+ K+R+ KR+ + I HP L +
Sbjct: 622 PGLADFTVVLNLSPKQLN---------EVKKLRREKRKFKVSA-VGSAIYLHPKL-KVFS 670
Query: 604 KKMNDYEDADYGNPARS------GKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFI 657
K +D D K + L+ L S G K L+F+Q L L+
Sbjct: 671 DKSDDVSDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLA 730
Query: 658 SYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRII 716
+ + + G T+ R+ ++ FN+ P +F + + G GI+L GA+RI+
Sbjct: 731 ALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAKIFFGSIKACGEGISLVGASRIL 790
Query: 717 IFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKI 772
I D NPS QA RA+R GQK+ V YRL IAGS E+ H FK+ + +K+
Sbjct: 791 ILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRL-IAGSSPEEEDHNTCFKKEVISKM 845
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 107 bits (268), Expect = 7e-23
Identities = 109/414 (26%), Positives = 174/414 (41%), Gaps = 53/414 (12%)
Query: 222 ANRSKDRDYDNQPDIPEWLKPHPK--ISDANISEDFMVPGDIFPLLFPYQKTCVQWLCEL 279
+N K +D D Q + E K + ++D I E P + P L +QK + WL L
Sbjct: 348 SNNQKVQD-DQQQQLEELFKDLDEQLVNDPTIREG--TPAGLIPTLMEHQKEGLMWLKRL 404
Query: 280 YQQGC-GGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWP 338
+ GGI+ D+MGLGKT+Q +A L T K L++ P ++++QW NE T
Sbjct: 405 EESSKKGGILADDMGLGKTVQALALLVTRPPESKSVKTTLIITPVSLLQQWHNEILTKIA 464
Query: 339 PFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKK 398
P ++ I G +K +I E+ + ++ + Y Y +++ K S+E +KK
Sbjct: 465 PSHRPTVY-IHHGSSKKHKIAEQLMSYDIVLTTYNVIAY-EFKNKMAYDKSIEDNAPIKK 522
Query: 399 LLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQN 458
H+ W ILDE I+N ++ + C L++
Sbjct: 523 F-------EHL-------------PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTY 562
Query: 459 RIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYK 518
R LSGTP+QN + E +SL F+ F + F P+ +SNI K
Sbjct: 563 RWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPL-------SSNINTSAPMK 615
Query: 519 CAVALRDLISPYLLRRVKSDVAK-----DLPKKNEMVLFCKLTQYQKSKYLEFLHSDELM 573
R L+ LLRR K+ LP K + L+ + ++ L S +
Sbjct: 616 ---RFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSS-SEMEFYNTLQSGAQI 671
Query: 574 KIRK----GKRQVLYGIDI-----LRKICNHPDLLDLKRKKMNDYEDADYGNPA 618
++RK G YG + LR+ C HP L+ + ++D + N A
Sbjct: 672 QMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRA 725
Score = 75.9 bits (185), Expect = 3e-13
Identities = 48/162 (29%), Positives = 80/162 (48%), Gaps = 6/162 (3%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDP-----ELSDLKFLRMDGTTNIGSRQSLVDKFNNEP- 692
K ++ Q + I +F+S+ + +K+L G + R + F +P
Sbjct: 875 KEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPN 934
Query: 693 YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAG 752
V L++ + G +G+NLT AN +II DP WNP + QA +RA RIGQ + V I R++
Sbjct: 935 VRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNN 994
Query: 753 SIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLG 794
+IEE++ Q K+ L + L + + ++N F G
Sbjct: 995 TIEERVLALQDRKRELIDSALGEKGLREISRLNTKELSFLFG 1036
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 100 bits (248), Expect = 2e-20
Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
Query: 620 SGKMQVVKQLLL--LWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTN 677
S K+ +V Q+L + S K ++ +Q +LDIL++ +S KD + L ++GT
Sbjct: 889 SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLS-KD----GVATLSLNGTIP 943
Query: 678 IGSRQSLVDKFN--NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAW 735
+ +RQ +V++FN N V LL+ GG+G+NL GAN +++ D WNP + QA++R +
Sbjct: 944 VKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIY 1003
Query: 736 RIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLF 791
R+GQK+ V IY+ M ++E++I Q K L++ +L K ++DL LF
Sbjct: 1004 RVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAKVSSKLTIDDLKGLF 1059
Score = 73.2 bits (178), Expect = 2e-12
Identities = 82/359 (22%), Positives = 142/359 (38%), Gaps = 116/359 (32%)
Query: 265 LFPYQKTCVQWLCELYQQ-GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLN--------- 314
L +QK + W+ ++ GGI+ D+MGLGKT+ +I+ + + ++++
Sbjct: 439 LMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEGKDESSDS 498
Query: 315 --------------------------GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSI 348
G LVVCPA++++QW +E +
Sbjct: 499 DSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVES------------- 545
Query: 349 GAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGH 408
+ +K+ + ++G N+ E K K + D
Sbjct: 546 -----------KVSRQKLTVCVHHG----NNRETKGK-----------------YLRDYD 573
Query: 409 IIITTY-VGLRLHSE--ALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGT 465
I++TTY + R H A+ V+W ILDE H +RN S SL L+ + R L+GT
Sbjct: 574 IVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGT 633
Query: 466 PIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRD 525
PIQN ++++L F+ L +++ N G N N+ +K+
Sbjct: 634 PIQNKELDVYALLKFLRCSPFDDLHTWKKWIDN--KSAGGQNRLNLLMKS---------- 681
Query: 526 LISPYLLRRVKSDVAKD-----LPK-----------KNEMVLFCKLTQYQKSKYLEFLH 568
+LRR K+ + D LP K EM ++ + Y ++ + +FLH
Sbjct: 682 ----LMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLFAQFLH 736
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 100 bits (248), Expect = 2e-20
Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 58/382 (15%)
Query: 404 ITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNR--II 461
+ + ++IT+Y + H + L+ ++G+ I DE H ++N + + T K+L Q + ++
Sbjct: 330 VGEAKVLITSYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVL 389
Query: 462 LSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPI------NMGGYANASNIQVKT 515
LSGTP + EL++ + GK F ++ + + G +N ++V
Sbjct: 390 LSGTPALSRPLELFTQLQMI-DGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVIL 448
Query: 516 GYKCAVALRDLISPYLLRRVKSDVAKDLPKKN-EMVLFCKLTQYQKSKYLEFLHS-DELM 573
K Y+LRR K +V L +KN E V+ + ++ E L + ++ +
Sbjct: 449 HLK-----------YMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETKETLDAFNKEL 497
Query: 574 KIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLW 633
K KG+ +IL + Y A V L L
Sbjct: 498 KTAKGRATE----EILLRF---------------------YARTAEVKTRAVCAYLKTLV 532
Query: 634 HSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLK--FLRMDGTTNIGSRQSLVDKFNNE 691
Q K ++F R M+D + +F LS LK ++R+DG T R VD F +
Sbjct: 533 KEQ-KKFIIFAHHRVMMDAISDF-------LSGLKVHYIRIDGQTRSDHRSDSVDTFQKK 584
Query: 692 PY-DVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMI 750
V LL+ + GI LT A I+ + DWNPST QA RA RIGQ + V L+
Sbjct: 585 SSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIA 644
Query: 751 AGSIEEKIYHRQIFKQFLSNKI 772
+ ++ I++ KQ + +K+
Sbjct: 645 HNTADDIIWNMLKNKQEVLSKV 666
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 99.8 bits (247), Expect = 2e-20
Identities = 95/373 (25%), Positives = 163/373 (43%), Gaps = 47/373 (12%)
Query: 406 DGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQL--KTQNRIILS 463
DG I +Y + + L+ + + I DE H ++N + + C + K Q I+LS
Sbjct: 296 DGVFNIVSYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKKAQYAILLS 355
Query: 464 GTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPIN---------------MGGYANA 508
GTP + EL+ + +YP + + ++ ++ G Y A
Sbjct: 356 GTPALSRPIELFKQLEALYPDVYRNIHEYGGRYCKGVSPLHIEKLPRSSYKGFFGTYQGA 415
Query: 509 SNIQVKTGYKCAVALRDLI-SPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFL 567
SN L +L+ + ++RR+K DV +LP K +F L +
Sbjct: 416 SNHD---------ELHNLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAAKDMKQINALF 466
Query: 568 HSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVK 627
H +K+ K K ++ + D+ LK + N Y + A + K+ V
Sbjct: 467 HE---LKVVKSK---------IKDCISEDDIKSLKFIEKNLINKI-YTDSAVA-KIPAVL 512
Query: 628 QLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDK 687
L G K L+F + ML+ L +F+ K + +R+DG+T SRQ+LV
Sbjct: 513 DYLENVIEAGCKFLVFAHHQSMLEELHQFLKKKK-----VGCIRIDGSTPASSRQALVSD 567
Query: 688 FNN-EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIY 746
F + + +L+ R G+GI LT A+ +I + W P +QA +RA RIGQ V I+
Sbjct: 568 FQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIH 627
Query: 747 RLMIAGSIEEKIY 759
L+ ++++ I+
Sbjct: 628 YLLANDTVDDIIW 640
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 99.4 bits (246), Expect = 3e-20
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 57/339 (16%)
Query: 285 GGIIGDEMGLGKTIQIIAFLATLHHSRKLNG--PVLVVCPATVMKQWCNEFHTWWPPFRA 342
GGI+ D+MGLGKTIQ+IA + + +K + LVV P +++KQW +E T A
Sbjct: 257 GGILADDMGLGKTIQMIALILSHPLPKKKHSIKSTLVVAPLSLIKQWESEVQTK-SKLTA 315
Query: 343 VILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEK 402
++ H GA K ++ E + ++ T +++ T T +S K +K
Sbjct: 316 IVYH--GASRYKLLKVIHE-YDVVITTYQ---ILVSEWVSHNTTGTDGKSPTEAKSYEKK 369
Query: 403 VITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIIL 462
+L W ILDE H I+N S +L C L+ NR L
Sbjct: 370 ------------------KPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCL 411
Query: 463 SGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVA 522
+GTP+QNN+ EL+SL F++ V++ Q + P+ G N+ K
Sbjct: 412 TGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQG----EENLVFK-------R 460
Query: 523 LRDLISPYLLRRVK----SDVAKD-------LPKKNEMVLFCKLTQYQKSKYLEFLHSDE 571
LR L+S +LRR K ++ KD L K+ + CK + ++ Y + E
Sbjct: 461 LRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSNLARNME 520
Query: 572 LM--------KIRKGKRQVLYGIDILRKICNHPDLLDLK 602
K+ K +L + LR+ CNHP L+ +
Sbjct: 521 RTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQSLNFQ 559
Score = 94.0 bits (232), Expect = 1e-18
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFL 697
KT++F+Q LDI+ + + + F+R DG N +R+ +D ++ V L
Sbjct: 672 KTIIFSQFTTFLDIIDLHL-----RKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLL 726
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
+ + G LG+NLT A+R+I+ D WNP+ + QA +R RIGQ+R+V +Y+L++ +IEEK
Sbjct: 727 CSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEK 786
Query: 758 IYHRQIFKQFLSNKILKDPKQKRF----FKMNDLHDLF 791
I Q K+ L+ + L D K+ F +NDL LF
Sbjct: 787 IVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLF 824
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 97.1 bits (240), Expect = 1e-19
Identities = 134/605 (22%), Positives = 237/605 (39%), Gaps = 133/605 (21%)
Query: 244 PKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAF 303
P + +A++SE V + L P+Q+ V + +G ++ D+MGLGKTIQ I
Sbjct: 418 PDVPEADLSE---VDPKLVSNLMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICI 471
Query: 304 LATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEEL 363
A + P+LVV P++V W F W P ++ + G ++
Sbjct: 472 AAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDR--------- 518
Query: 364 EKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEA 423
+T G I I ++ L E
Sbjct: 519 ----------------------------------------LTAGLINIVSF-DLLSKLEK 537
Query: 424 LLNVRWGYAILDEGHKIRNP-DSDISLTCKQLKTQNRIIL-SGTPIQNNLTELWSLFDFV 481
L + I+DE H ++N + LK R+IL SGTP + EL++ V
Sbjct: 538 QLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAV 597
Query: 482 YPGKLGTLPVFQQQFANPINMG---GYANASNIQVKTGYKCAVALRDLISPYLLRRVKSD 538
P F ++ + M Y+ +SN+ + + L + + +LRR+KSD
Sbjct: 598 KPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLG-----ELKLLLEEAV---MLRRLKSD 649
Query: 539 VAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGK--RQVLYGIDILRKICNHP 596
V LP K ++ I G+ + +D K
Sbjct: 650 VLSQLPAKQRKIVV----------------------IAPGRINARTRAALDAAAK---EM 684
Query: 597 DLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEF 656
D +++ D + A + V++ +L L S K L+F + +LD + +
Sbjct: 685 TTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQE 744
Query: 657 ISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFN-NEPYDVFLLTTRVGGLGINLTGANRI 715
+ K ++ +R+DG+T+ R+ L +F +E + V +L+ +G+ + A+ +
Sbjct: 745 LERKH-----VQHIRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLV 799
Query: 716 IIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGS--------IEEKI-------YH 760
+ + WNP +QA +R RIGQ V I+ L+ G+ I+EKI
Sbjct: 800 VFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLS 859
Query: 761 RQIFKQFL--SNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQN 818
F + ++ + KDPKQ++ ++DLF +E E + E+++ +
Sbjct: 860 ETNFSEMTESTDYLYKDPKQQK------IYDLF----QKSFEKEGSDMELLEAAESFDPG 909
Query: 819 KTSET 823
S T
Sbjct: 910 SASGT 914
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 96.7 bits (239), Expect = 2e-19
Identities = 61/178 (34%), Positives = 102/178 (57%), Gaps = 7/178 (3%)
Query: 616 NPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGT 675
N S K+ + + L S G K++LF+Q LD+LQ +S ++ F+R+DGT
Sbjct: 858 NWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSR-----NNFSFVRLDGT 912
Query: 676 TNIGSRQSLVDKFNNE-PYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERA 734
+ R+ ++ +F+ + V L++ + GG+GINLT A+ + DP WNP+ + QA R
Sbjct: 913 LSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRI 972
Query: 735 WRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFT 792
RIGQ +EV I R ++ G++EE++ Q KQ + + L D ++ R ++ +L LFT
Sbjct: 973 HRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTD-QEVRSARIEELKMLFT 1029
Score = 92.4 bits (228), Expect = 3e-18
Identities = 96/369 (26%), Positives = 149/369 (40%), Gaps = 66/369 (17%)
Query: 281 QQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPA----TVMKQWCNEFHTW 336
Q GGI+ D MGLGKT+ I+ L L HS K + CP V+ ++ +
Sbjct: 410 QMARGGILADAMGLGKTVMTISLL--LAHSWKAASTGFL-CPNYEGDKVISSSVDDLTS- 465
Query: 337 WPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSV 396
PP +A K + LE+ + N G + +T +E
Sbjct: 466 -PPVKAT----------KFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKP 514
Query: 397 KKLL------------EKVITDGHIIITTYVGLRLH--------SEALLNVRWGYAILDE 436
L K+++ ++ITTY L E + VRW +LDE
Sbjct: 515 GSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDE 574
Query: 437 GHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQF 496
H I+N S ISL L R L+GTPIQNNL +L+SL F+ GT + +
Sbjct: 575 AHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLV 634
Query: 497 ANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKD------LPKKNEMV 550
P G +Q ++ P +LRR KS ++ LP + V
Sbjct: 635 QKPFEEGDERGLKLVQ------------SILKPIMLRRTKSSTDREGRPILVLPPADARV 682
Query: 551 LFCKLTQYQKSKY--------LEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLDLK 602
++C+L++ ++ Y ++F E K+ +L + LR+ C+HP L+ +
Sbjct: 683 IYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLV-MS 741
Query: 603 RKKMNDYED 611
R +Y D
Sbjct: 742 RGDTAEYSD 750
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 96.3 bits (238), Expect = 2e-19
Identities = 63/193 (32%), Positives = 105/193 (53%), Gaps = 14/193 (7%)
Query: 608 DYEDADYGNPARSGKMQVVKQLLLLWHSQGH--KTLLFTQSRQMLDILQEFISYKDPELS 665
D EDA + +S K+ + LL+ + K+++F+Q R+ML +L+ + + +
Sbjct: 696 DGEDAK--SSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPL-----KAA 748
Query: 666 DLKFLRMDGTTNIGSRQSLVDKFNNEPYD---VFLLTTRVGGLGINLTGANRIIIFDPDW 722
LR+DG + R ++ +F N V L + + G GINLT A+R+ +FDP W
Sbjct: 749 GFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWW 808
Query: 723 NPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK--DPKQKR 780
NP+ + QA +R RIGQK+EV + R++ SIEE++ Q K+ L+N+ K K +R
Sbjct: 809 NPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEAFKRRQKKDER 868
Query: 781 FFKMNDLHDLFTL 793
+ D+ L +L
Sbjct: 869 EVNVEDVVALMSL 881
Score = 58.2 bits (139), Expect = 7e-08
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 409 IIITTYVGLRLHSE----ALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSG 464
I++TTY L + + + W ILDE H I+N ++ S +LK R ++G
Sbjct: 407 IVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTG 466
Query: 465 TPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALR 524
TPIQN +L+SL F+ +Q P+ G S +QV
Sbjct: 467 TPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRLQV----------- 515
Query: 525 DLISPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKY 563
L++ LRR K LP K + +L+ ++ Y
Sbjct: 516 -LMATISLRRTKEKSLIGLPPKTVETCYVELSPEERQLY 553
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 94.0 bits (232), Expect = 1e-18
Identities = 116/524 (22%), Positives = 211/524 (40%), Gaps = 95/524 (18%)
Query: 241 KPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQI 300
KP SD N D + LFPYQK V + E + ++ DEMGLGK++Q
Sbjct: 179 KPKAAPSDLNTVMD----PSLIERLFPYQKEGVIFALE---RDGRILLADEMGLGKSVQA 231
Query: 301 IAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPE 360
+ T+ K + P+L+VCPA+V W + +T++P I+H I +P+
Sbjct: 232 L----TIARYYKADWPLLIVCPASVKGAWKKQLNTFFP-----IIHRIFIVDKSSDPLPD 282
Query: 361 EELEKMLMTSNYGTFTY-NDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRL 419
+ +Y +D KKEK RT
Sbjct: 283 VCTSNTVAIMSYEQMVLKHDILKKEKYRT------------------------------- 311
Query: 420 HSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLK--TQNRIILSGTPIQNNLTELWSL 477
I DE H +++ + + L + I+LSGTP + +EL++
Sbjct: 312 ------------IIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELFTQ 359
Query: 478 FDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKS 537
+ F ++ + G + + + A+ + L ++RR+K+
Sbjct: 360 IRLIDHKLFTNFHEFAIRYCDG-KQGRFCFEAKGCTNSEELAAIMFKRL----MIRRLKA 414
Query: 538 DVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPD 597
DV KDLP+K V++ D+L K R +V +
Sbjct: 415 DVLKDLPEKRREVVYVSGPTID-------ARMDDLQKARADYEKV--------------N 453
Query: 598 LLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFI 657
++ K + + ++ G + + + + + K L+F + +LD +Q +
Sbjct: 454 SMERKHESLLEFYSLT-GIVKAAAVCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEV 512
Query: 658 SYKDPELSDLKFLRMDGTTNIGSRQSLVDKF-NNEPYDVFLLTTRVGGLGINLTGANRII 716
+ + L +R+DG T R +L D F ++ V +L+ G+GI LT A+ ++
Sbjct: 513 NKR-----KLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVV 567
Query: 717 IFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYH 760
+ +NP +QA +RA R+GQK V + L+ + ++ +++
Sbjct: 568 FAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWN 611
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 94.0 bits (232), Expect = 1e-18
Identities = 116/524 (22%), Positives = 211/524 (40%), Gaps = 95/524 (18%)
Query: 241 KPHPKISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQI 300
KP SD N D + LFPYQK V + E + ++ DEMGLGK++Q
Sbjct: 177 KPKAAPSDLNTVMD----PSLIERLFPYQKEGVIFALE---RDGRILLADEMGLGKSVQA 229
Query: 301 IAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPE 360
+ T+ K + P+L+VCPA+V W + +T++P I+H I +P+
Sbjct: 230 L----TIARYYKADWPLLIVCPASVKGAWKKQLNTFFP-----IIHRIFIVDKSSDPLPD 280
Query: 361 EELEKMLMTSNYGTFTY-NDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRL 419
+ +Y +D KKEK RT
Sbjct: 281 VCTSNTVAIMSYEQMVLKHDILKKEKYRT------------------------------- 309
Query: 420 HSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLK--TQNRIILSGTPIQNNLTELWSL 477
I DE H +++ + + L + I+LSGTP + +EL++
Sbjct: 310 ------------IIFDESHMLKDGKARRTKVATDLSKVALHVILLSGTPALSRPSELFTQ 357
Query: 478 FDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKS 537
+ F ++ + G + + + A+ + L ++RR+K+
Sbjct: 358 IRLIDHKLFTNFHEFAIRYCDG-KQGRFCFEAKGCTNSEELAAIMFKRL----MIRRLKA 412
Query: 538 DVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPD 597
DV KDLP+K V++ D+L K R +V +
Sbjct: 413 DVLKDLPEKRREVVYVSGPTID-------ARMDDLQKARADYEKV--------------N 451
Query: 598 LLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFI 657
++ K + + ++ G + + + + + K L+F + +LD +Q +
Sbjct: 452 SMERKHESLLEFYSLT-GIVKAAAVCEHILENYFYPDAPPRKVLIFAHHQIVLDTIQVEV 510
Query: 658 SYKDPELSDLKFLRMDGTTNIGSRQSLVDKF-NNEPYDVFLLTTRVGGLGINLTGANRII 716
+ + L +R+DG T R +L D F ++ V +L+ G+GI LT A+ ++
Sbjct: 511 NKR-----KLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVV 565
Query: 717 IFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYH 760
+ +NP +QA +RA R+GQK V + L+ + ++ +++
Sbjct: 566 FAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMWN 609
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 90.9 bits (224), Expect = 9e-18
Identities = 56/187 (29%), Positives = 102/187 (53%), Gaps = 13/187 (6%)
Query: 611 DADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFL 670
D DY + +++V+ ++ + K ++ +Q +L++++ I + S K+
Sbjct: 911 DPDYLSCKIKNTLEIVENIM----EKKEKVVIVSQWTSVLNLIEIHI-----KSSGFKYT 961
Query: 671 RMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDM 728
+ G + RQ VD FN E V LL+ GG+G+NLTG N +++ D WNP+ +
Sbjct: 962 SITGQVLVKDRQERVDSFNREKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQ 1021
Query: 729 QARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMN--D 786
QA +R +R+GQK++V I+RL+ G+IE+++ Q K L++ +L ++ K+ D
Sbjct: 1022 QAFDRIYRMGQKKDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDGNATRKMNKLTTAD 1081
Query: 787 LHDLFTL 793
+ LF L
Sbjct: 1082 IKMLFGL 1088
Score = 70.1 bits (170), Expect = 2e-11
Identities = 66/243 (27%), Positives = 100/243 (40%), Gaps = 37/243 (15%)
Query: 265 LFPYQKTCVQWL-CELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKL---------- 313
L P+QK + W+ Q GGI+ D+MGLGKT+ +I+ +A +R+
Sbjct: 471 LMPHQKAGLTWMRWRETQPQPGGILADDMGLGKTLSMISLIAHQKAARRARREDGNDDKD 530
Query: 314 ---------------NGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQI 358
NG L+V PA+++ QW E +V+ + G K I
Sbjct: 531 KEKRKVVKEQGLIPSNG-TLIVAPASLIHQWDAEIDRRLDD--SVLSTYMFHGTKKQRDI 587
Query: 359 PEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLR 418
L + + N+ +K +T++ + + H I VG
Sbjct: 588 DARRLARYDVVITTFNLIANELIEKIRTKSKADDSSDGES------DSNHTGIRRAVGK- 640
Query: 419 LHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLF 478
L + W ILDE H I+N S S +L +R LSGTPI NNL +L+SL
Sbjct: 641 -DDSVLAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLV 699
Query: 479 DFV 481
F+
Sbjct: 700 RFL 702
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 88.2 bits (217), Expect = 6e-17
Identities = 74/248 (29%), Positives = 127/248 (50%), Gaps = 23/248 (9%)
Query: 552 FCKLTQYQKSKYLEFLHSDEL-MKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMN--D 608
FC+ ++ Y+EF +S L +K + Q ID R LL L + N +
Sbjct: 936 FCEKCLFE---YIEFQNSKNLGLKCPNCRNQ----IDACR-------LLALVQTNSNSKN 981
Query: 609 YEDADYGNPARSGKMQ-VVKQLLLLWHSQ-GHKTLLFTQSRQMLDILQEFISYKDPELSD 666
E Y ++S K+ ++K+L LL S G + ++F+Q LDIL++ +++ +
Sbjct: 982 LEFKPYSPASKSSKITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSK-DV 1040
Query: 667 LKFLRMDGTTNIGSRQSLVDKFNNEPYD---VFLLTTRVGGLGINLTGANRIIIFDPDWN 723
K + DG ++ R S++ F + Y + LL+ + GG+G+NLT A+ + DP W+
Sbjct: 1041 AKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWS 1100
Query: 724 PSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFK 783
PS + QA +R RIGQ V + R +I SIEEK+ Q K+ + + D ++R +
Sbjct: 1101 PSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEAMDTDEDERRKRR 1160
Query: 784 MNDLHDLF 791
+ ++ LF
Sbjct: 1161 IEEIQMLF 1168
Score = 73.2 bits (178), Expect = 2e-12
Identities = 91/384 (23%), Positives = 147/384 (37%), Gaps = 95/384 (24%)
Query: 262 FPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHS-----RKL--- 313
F L P KT ++ GGI+ DEMGLGKT+ + + + H +KL
Sbjct: 514 FSLAKPILKTMIK----------GGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDI 563
Query: 314 ---------------------NGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGM 352
+ L+V P +++ QW NEF + H + G
Sbjct: 564 ENTAVSDNLPSTWQDNKKPYASKTTLIVVPMSLLTQWSNEFTK--ANNSPDMYHEVYYGG 621
Query: 353 NKG---TQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHI 409
N T + + + ++ + YG N++ K K R +TD +
Sbjct: 622 NVSSLKTLLTKTKTPPTVVLTTYG-IVQNEWTKHSKGR----------------MTDEDV 664
Query: 410 IITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQN 469
I S L +V + I+DEGH IRN + S L+ + + +L+GTPI N
Sbjct: 665 NI---------SSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIIN 715
Query: 470 NLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISP 529
L +L+SL F+ + ++ + P Y A ++ + ++ P
Sbjct: 716 RLDDLYSLVKFLELDPWRQINYWKTFVSTPFESKNYKQAFDV-----------VNAILEP 764
Query: 530 YLLRRVKSDVAKD------LPKKNEMVLFCKLTQYQKSKYLEFLHSDELM--------KI 575
LLRR K KD LP K ++ ++ Q Y L E+ +
Sbjct: 765 VLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDL 824
Query: 576 RKGKRQVLYGIDILRKICNHPDLL 599
K +L I LR++C HP L+
Sbjct: 825 LKKYSTILVHILRLRQVCCHPGLI 848
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 87.8 bits (216), Expect = 8e-17
Identities = 43/83 (51%), Positives = 58/83 (69%)
Query: 695 VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSI 754
+F+L+TR GGLG+NL A+ +IIFD DWNP D+QA++RA RIGQ +EV I RL+ SI
Sbjct: 8 IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSI 67
Query: 755 EEKIYHRQIFKQFLSNKILKDPK 777
EE I R +K L K+++ K
Sbjct: 68 EENILSRAQYKLDLDGKVIQAGK 90
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 87.4 bits (215), Expect = 1e-16
Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 33/301 (10%)
Query: 248 DANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQG-CGGIIGDEMGLGKTIQIIAFLAT 306
D + + + + L P+Q W+ + Q CGG++ D+MGLGKTIQ IA L T
Sbjct: 233 DLQLKNEQVQSAGLLVSLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLLT 292
Query: 307 LHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKM 366
L L+V ++ QW E T P + + ++ K E +
Sbjct: 293 QKSQDPLRKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDV 352
Query: 367 LMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLN 426
++T T++ YE K+ + + + + +LL
Sbjct: 353 VLT----TYSMLAYEMKQNDAFNNNNPATATPP--------------------PACSLLE 388
Query: 427 VRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKL 486
W +LDE H IRN D+ + C +L + R LSGTPIQN++ E +SL F+
Sbjct: 389 TSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPY 448
Query: 487 GTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLPKK 546
+F + + P+ + ++I V+ K LR L++ + RR K +LP
Sbjct: 449 CVWSLFAKDISRPLK----SYRADI-VEAALK---RLRILLASTVFRRTKETRVNNLPIV 500
Query: 547 N 547
N
Sbjct: 501 N 501
Score = 87.0 bits (214), Expect = 1e-16
Identities = 57/181 (31%), Positives = 98/181 (53%), Gaps = 9/181 (4%)
Query: 620 SGKMQVVKQLLL--LWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTN 677
S K+ +Q +L + + K L+++Q Q L ++ + +L +++ +R DGT +
Sbjct: 722 SSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHML-----KLENIRHVRYDGTMS 776
Query: 678 IGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWR 736
RQ + FNN+ V L++ + G +G+NLT AN +I+ +P +NPS + QA +R R
Sbjct: 777 ANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHR 836
Query: 737 IGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGD 796
+GQ++ VT+YR + +IEE+I Q K+ L + L D + D +L L G
Sbjct: 837 LGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEAL-DSNENNPLSRLDKEELLYLFGL 895
Query: 797 N 797
N
Sbjct: 896 N 896
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 87.4 bits (215), Expect = 1e-16
Identities = 47/141 (33%), Positives = 82/141 (57%), Gaps = 6/141 (4%)
Query: 634 HSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPY 693
+S K+++ +Q ML ++ + + L + +DG+ N R LV+ FN+
Sbjct: 1006 NSASQKSVIVSQWTNMLKVVALHL-----KKHGLTYATIDGSVNPKQRMDLVEAFNHSRG 1060
Query: 694 -DVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAG 752
V L++ GG+G+NLTG N + + D WNPS + QA +R +R+GQ+++V I+R + G
Sbjct: 1061 PQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEG 1120
Query: 753 SIEEKIYHRQIFKQFLSNKIL 773
++EEKI Q K+ L+ ++L
Sbjct: 1121 TVEEKILQLQEKKKDLAKQVL 1141
Score = 78.6 bits (192), Expect = 5e-14
Identities = 83/352 (23%), Positives = 134/352 (37%), Gaps = 110/352 (31%)
Query: 263 PLLFPYQKTCVQWLC-ELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRK--------- 312
PLL +QK + WL Q+ GGI+ D+MGLGKT+ +IA + T + K
Sbjct: 569 PLLL-HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTA 627
Query: 313 ------------LNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPE 360
+ L++CPA+++ W NE
Sbjct: 628 LTWLSKDDSCDFTSHGTLIICPASLIHHWKNE---------------------------- 659
Query: 361 EELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYV----- 415
+EK + ++ + Y+ + + R V++ I+ITTY
Sbjct: 660 --VEKRVNSNKLRVYLYHGPNRDSRAR---------------VLSTYDIVITTYSLVAKE 702
Query: 416 -----------GLRLHSEA----LLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRI 460
G L+ E LL + W ILDE H ++NP S+ +L+ R
Sbjct: 703 IPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARW 762
Query: 461 ILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCA 520
++GTPIQNNL +++SL F+ +++ Q N GG
Sbjct: 763 AVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGG---------------- 806
Query: 521 VALRDLISPYLLRRVKSDVAKD------LPKKNEMVLFCKLTQYQKSKYLEF 566
L L LLRR K + LP++ + KL++ +++ Y F
Sbjct: 807 ERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 87.0 bits (214), Expect = 1e-16
Identities = 50/130 (38%), Positives = 81/130 (61%), Gaps = 7/130 (5%)
Query: 635 SQGH-KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP- 692
SQG KT++F+Q MLD+++ I S ++F R+DGT ++ +R V +F+ +P
Sbjct: 889 SQGAVKTIIFSQWTGMLDLVELRILE-----SGIEFRRLDGTMSLAARDRAVKEFSKKPD 943
Query: 693 YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAG 752
V L++ + G LG+N+ A +I+ D WNP+T+ QA +RA RIGQ R VT+ R+ I
Sbjct: 944 VKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKD 1003
Query: 753 SIEEKIYHRQ 762
++E++I Q
Sbjct: 1004 TVEDRILKLQ 1013
Score = 59.7 bits (143), Expect = 2e-08
Identities = 75/319 (23%), Positives = 127/319 (39%), Gaps = 59/319 (18%)
Query: 318 LVVCPATVMKQWCNEFH---TWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
L+VCPA+V++QW E + ++ H G N+ T+ P E E ++ + Y
Sbjct: 417 LIVCPASVVRQWARELDEKVSEESKLSVLVYH----GSNR-TKDPNELAEYDVVVTTYAI 471
Query: 375 FTY----------NDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEA- 423
T ++ ++K R L S S K + V+ G + G + ++
Sbjct: 472 VTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVV--GASKKSKRRGRKSTNDTS 529
Query: 424 -------LLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWS 476
L V W +LDE I+N + ++ +C L+ + R LSGTPIQN + +L+S
Sbjct: 530 SEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYS 589
Query: 477 LFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVK 536
F F+ F PI+ GYK L+ ++ +LRR K
Sbjct: 590 YFRFLRYDPYAVYKSFYSTIKVPISRNSC---------QGYK---KLQAVLRAIMLRRTK 637
Query: 537 SDVAKDLPKKN----------------EMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKR 580
+ P N E + KL +S++ + + L +
Sbjct: 638 GTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTL---SQNYA 694
Query: 581 QVLYGIDILRKICNHPDLL 599
+L + LR+ C+HP L+
Sbjct: 695 NILLLLLRLRQACDHPQLV 713
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 85.5 bits (210), Expect = 4e-16
Identities = 44/121 (36%), Positives = 78/121 (64%), Gaps = 6/121 (4%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFL 697
KT++F+Q MLD+++ + + ++F R+DGT ++ +R V +F+N+P V +
Sbjct: 903 KTIIFSQWTGMLDLVELSLIE-----NSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMI 957
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
++ + G LG+N+ A +I+ D WNP+T+ QA +RA RIGQ R VT+ R+ I ++E++
Sbjct: 958 MSLKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDR 1017
Query: 758 I 758
I
Sbjct: 1018 I 1018
Score = 65.9 bits (159), Expect = 3e-10
Identities = 86/356 (24%), Positives = 141/356 (39%), Gaps = 69/356 (19%)
Query: 286 GIIGDEMGLGKTIQIIAFLATLHHSRKLNGP-VLVVCPATVMKQWCNEFH---TWWPPFR 341
G+ GD G+ K A +T +RK L+VCPA+V++QW E T
Sbjct: 389 GVNGDS-GIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWARELDEKVTDEAKLS 447
Query: 342 AVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTY----------NDYEKKEKTRTSLE 391
+I H G N+ T+ P E + ++ + Y + ++ ++K + L
Sbjct: 448 VLIYH----GGNR-TKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEKNSEKYGLA 502
Query: 392 SRKSVKKLLEKVITDGHIIITTYVGLRLH------------SEALLNVRWGYAILDEGHK 439
S S+ K + V+ TT + S L V W +LDE
Sbjct: 503 SGFSINKKRKNVVG------TTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQT 556
Query: 440 IRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANP 499
I+N + ++ C L+ + R LSGTPIQN + +L+S F F+ F Q P
Sbjct: 557 IKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGP 616
Query: 500 INMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAK-----DLPKK-------- 546
I+ GYK L+ ++ +LRR K + +LP K
Sbjct: 617 ISRNSL---------QGYK---KLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVD 664
Query: 547 ---NEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLL 599
E + KL +S++ + + L + +L + LR+ C+HP L+
Sbjct: 665 FSVEERSFYVKLESDSRSQFKAYAAAGTL---NQNYANILLMLLRLRQACDHPQLV 717
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 85.1 bits (209), Expect = 5e-16
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 623 MQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQ 682
++VV+++L + K ++ +Q +L+++++ I + + + G + RQ
Sbjct: 846 LEVVREIL----EKKEKVVIVSQWTSVLNLVEKHI-----QAGGHNYTSITGQVLVKDRQ 896
Query: 683 SLVDKFNNEP--YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQK 740
VD FN E V LL+ GG+G+NL G N +I+ D WNP+ + QA +R +R+GQK
Sbjct: 897 ERVDSFNQEKGGAQVMLLSLTAGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQK 956
Query: 741 REVTIY--------RLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMN--DLHDL 790
+EV I+ RL++ G+IE+++ Q K L+ +L+ ++ K+ D+ L
Sbjct: 957 KEVFIHRLNISKFCRLIVKGTIEQRVMDLQEKKLALAASVLEGTATRKLNKLTTADIRML 1016
Query: 791 FTLGGDN 797
F L G +
Sbjct: 1017 FGLDGSS 1023
Score = 72.0 bits (175), Expect = 4e-12
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 44/253 (17%)
Query: 258 PGDIFPLLFPYQKTCVQWLCELYQQG---CGGIIGDEMGLGKTIQIIAFLA---TLHHSR 311
P + L P+QK ++WL ++++G GGI+ D+MGLGKT+ +++ + +R
Sbjct: 382 PDGLLVELMPHQKAGLRWL--VWREGQPHSGGILADDMGLGKTLSMLSLIVHQKAARRAR 439
Query: 312 KLNGP---------------------VLVVCPATVMKQWCNEFHTWWPP--FRAVILHSI 348
K +G L++ PA+++ QW E + + H
Sbjct: 440 KESGDNAADKEKRRVAKEEGLYPSNGTLIIAPASLIHQWEAEINRRLESDLLSVFMFH-- 497
Query: 349 GAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGH 408
G K QI +EL + + T N+ +K+ + E + E+
Sbjct: 498 --GTKKQRQIEPKELARYDVVITTYTLAANELMEKKAAGSKKEEDSDDESENEE------ 549
Query: 409 IIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQ 468
+ L V W ILDE H I+N S S +L + +R LSGTPI
Sbjct: 550 ---NPRRPAGKNDSPLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIH 606
Query: 469 NNLTELWSLFDFV 481
NNL +L+SL F+
Sbjct: 607 NNLWDLYSLVRFL 619
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 85.1 bits (209), Expect = 5e-16
Identities = 51/156 (32%), Positives = 88/156 (55%), Gaps = 7/156 (4%)
Query: 637 GHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNN-EPYDV 695
G K+++F+Q LD+L+ + + E FLR DG R+ ++ +FN + +
Sbjct: 1127 GEKSIVFSQWTSFLDLLEIPLRRRGFE-----FLRFDGKLAQKGREKVLKEFNETKQKTI 1181
Query: 696 FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIE 755
L++ + GG+G+NLT A+ + + DP WNP+ + QA R RIGQKR V + R ++ ++E
Sbjct: 1182 LLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVE 1241
Query: 756 EKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLF 791
E++ Q KQ + L D ++ R ++ +L LF
Sbjct: 1242 ERMQQVQARKQRMIAGALTD-EEVRSARLEELKMLF 1276
Score = 68.9 bits (167), Expect = 4e-11
Identities = 81/382 (21%), Positives = 139/382 (36%), Gaps = 107/382 (28%)
Query: 281 QQGCGGIIGDEMGLGKTIQIIAFLAT--------------------------LHHSR--- 311
Q GGI+ D MGLGKT+ IA + +H +
Sbjct: 678 QMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTV 737
Query: 312 KLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSN 371
K G L++CP ++ QW +E T P +L G
Sbjct: 738 KAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGG--------------------- 776
Query: 372 YGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTY-VGLRLHSEALLN---- 426
++T + K I +++TTY V + + + N
Sbjct: 777 ------------DRTHDA------------KAIASHDVVLTTYGVLTSAYKQDMANSIFH 812
Query: 427 -VRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGK 485
+ W +LDE H I++ + + +L + R L+GTP+QN L +L+SL F++
Sbjct: 813 RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP 872
Query: 486 LGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAK---- 541
+ + P Y N +K ++ ++ P +LRR K K
Sbjct: 873 WCNWAWWSKLIQKP-----YENGDPRGLK-------LIKAILRPLMLRRTKETRDKEGSL 920
Query: 542 --DLPKKNEMVLFCKLTQYQKSKYLEFLHSDELM--------KIRKGKRQVLYGIDILRK 591
+LP + V+ C+ ++ ++ Y ++ K+ +L + LR+
Sbjct: 921 ILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQ 980
Query: 592 ICNHPDLLDLKRKKMNDYEDAD 613
CNHP L+ + R Y D D
Sbjct: 981 CCNHPFLV-MSRADSQQYADLD 1001
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 85.1 bits (209), Expect = 5e-16
Identities = 60/218 (27%), Positives = 110/218 (49%), Gaps = 13/218 (5%)
Query: 578 GKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQG 637
G ++ ++IL+ + DL D + N P ++ M V + + G
Sbjct: 1075 GSSKIKAALEILQSLPKAHDLTDSNQISENREYSGLSITPVKNEGMSVDVPIKVA----G 1130
Query: 638 HKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVF 696
K ++F+Q +ML++L+ + S +++ R+DGT ++ +R V FN P V
Sbjct: 1131 EKAIVFSQWTKMLNLLEASLVS-----SHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVM 1185
Query: 697 LLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEE 756
+++ + LG+N+ A +++ D WNP+T+ QA +RA RIGQ R VT+ R + ++E+
Sbjct: 1186 IMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVED 1245
Query: 757 KIYHRQIFKQFL-SNKILKDPKQKR--FFKMNDLHDLF 791
+I Q K+ + ++ +D K R + DL LF
Sbjct: 1246 RILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1283
Score = 68.9 bits (167), Expect = 4e-11
Identities = 78/314 (24%), Positives = 131/314 (40%), Gaps = 53/314 (16%)
Query: 318 LVVCPATVMKQWCNEFH---TWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
LVVCP +VM+QW +E H T ++ H + T+ P E + ++ + +
Sbjct: 675 LVVCPTSVMRQWADELHKKVTSEANLSVLVYHG-----SSRTKDPHELAKYDVVVTTFSI 729
Query: 375 FTYN-------DYEKKEKTR-----TSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSE 422
+ D E +EK T+ S KK K D + + S
Sbjct: 730 VSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKK--RKYPPDSKKKGSKKKKVEFLSG 787
Query: 423 ALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVY 482
L V W +LDE I+N + ++ C L+ + R LSGTPIQN++ +L+S F F+
Sbjct: 788 PLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 847
Query: 483 PGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAK- 541
+ +F NPI VK GY+ L+ ++ +LRR K +
Sbjct: 848 YDPYSSYVLFCSTIKNPITRN--------PVK-GYQ---KLQAILKTVMLRRTKGSLLDG 895
Query: 542 ----DLPKKN-----------EMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVLYGI 586
LP K+ E + KL ++++ E+ E +++ +L +
Sbjct: 896 KPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYA---EAGTVKQNYVNILLML 952
Query: 587 DILRKICNHPDLLD 600
LR+ C+HP L++
Sbjct: 953 LRLRQACDHPLLVN 966
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 83.6 bits (205), Expect = 1e-15
Identities = 102/404 (25%), Positives = 154/404 (37%), Gaps = 94/404 (23%)
Query: 258 PGDIFPLLFPYQKTCVQWLCELYQQGCGG-IIGDEMGLGKTIQIIAFLATLHHSRKLNGP 316
P ++ L P+Q+ V WL GG I+ DEMG+GKTIQ IA L S P
Sbjct: 350 PKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLL----SEPRGKP 405
Query: 317 VLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEK--MLMTSNYGT 374
LVV P + QW E T + L+ + I EEL +++TS
Sbjct: 406 TLVVAPVVAIMQWKEEIDTHTNKALSTYLY-----YGQARDISGEELSSYDVVLTS---- 456
Query: 375 FTYNDYEK-KEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAI 433
YN E K R+ + V K EK + LH + I
Sbjct: 457 --YNVIESVYRKERSGFRRKNGVVK--EKSL--------------LHQMEFYRI-----I 493
Query: 434 LDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYP---------- 483
LDE H I++ + + L+T +I LSGTP+QN + EL+SL F+
Sbjct: 494 LDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQ 553
Query: 484 ----------------GKLGTLPV-----FQQQFANPINMGGYANASNIQVKTGYKCAVA 522
+ G P+ F + PI GY + K
Sbjct: 554 CECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFK-------K 606
Query: 523 LRDLISPYLLRRVK-------------SDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHS 569
+ L+ +LRR K +V KDL + E ++ L K K+ +L
Sbjct: 607 VHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAE 666
Query: 570 DELMKIRKGKRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDAD 613
++ + I +R++ +HPDL+ ++K D E+ +
Sbjct: 667 GVVL---NNYANIFQLITRMRQMADHPDLVLASKRKTVDIENQE 707
Score = 82.4 bits (202), Expect = 3e-15
Identities = 58/215 (26%), Positives = 105/215 (47%), Gaps = 20/215 (9%)
Query: 593 CNHPDLLDLKRKKMNDYEDADYGNPA-----------RSGKMQVVKQLLLLWHSQGH--K 639
C P +DL + D+ + + N + S K++ + + L L + K
Sbjct: 753 CFIPLSIDLSAPALEDFSEEKFKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLK 812
Query: 640 TLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNE-PYDVFLL 698
+++F+Q MLD++ + + +++DG +R + ++ F+N+ +FL+
Sbjct: 813 SIVFSQFTSMLDLIHWRL-----RKAGFNCVKLDGGMTPKARAATIEAFSNDINITIFLV 867
Query: 699 TTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKI 758
+ + GG+ +NLT A+++ + DP WN + QA +R RIGQKR + + L I SIE KI
Sbjct: 868 SLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITLCIENSIESKI 927
Query: 759 YHRQIFK-QFLSNKILKDPKQKRFFKMNDLHDLFT 792
Q K Q + I +D K + D+ LF+
Sbjct: 928 IELQEKKAQMIHATIDQDEKALNQLSVEDMQFLFS 962
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 83.2 bits (204), Expect = 2e-15
Identities = 100/397 (25%), Positives = 153/397 (38%), Gaps = 93/397 (23%)
Query: 265 LFPYQKTCVQWLCELYQQ-GCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPA 323
L P+Q + WL + GG++ DEMG+GKTIQ IA L + P LVV P
Sbjct: 184 LLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLM----NDLTKSPSLVVAPT 239
Query: 324 TVMKQWCNEF--HTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYE 381
+ QW NE HT + I H G ++ T I + + +++T TY
Sbjct: 240 VALMQWKNEIEQHTKGQ-LKIYIYH----GASRTTDIKDLQGYDVVLT------TY---- 284
Query: 382 KKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIR 441
+LE V + GL L N+ + ILDE H I+
Sbjct: 285 ----------------AVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIK 328
Query: 442 NPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANP-- 499
+ S+ + LKTQ R LSGTP+QN + E++SL F+ + F + F
Sbjct: 329 DRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFL------NINPFTKYFCTKCD 382
Query: 500 ------------------------INMGGYANASNIQ----VKTGYKCAVALRDLISPYL 531
N + NIQ G + ++ L+ +
Sbjct: 383 CASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKNIM 442
Query: 532 LRRVKSDVAKDLP-------------KKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKG 578
LRR K + A DL + E L+ L K KY F+ ++
Sbjct: 443 LRRTKVERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVL---NN 499
Query: 579 KRQVLYGIDILRKICNHPDLLDLKRKKMNDYEDADYG 615
+ I +R++ +HPDL+ K++N++ D G
Sbjct: 500 YANIFTLITRMRQLADHPDLV---LKRLNNFPGDDIG 533
Score = 74.3 bits (181), Expect = 9e-13
Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKF-NNEPYDVFL 697
K+++F+Q MLD+++ + + + + +++ G+ + R + F NN +VFL
Sbjct: 639 KSIVFSQFTSMLDLVEWRL-----KRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFL 693
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
++ + GG+ +NL A+++ I DP WNPS + Q+ +R RIGQ R V I R I SIE +
Sbjct: 694 VSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEAR 753
Query: 758 IYHRQ 762
I Q
Sbjct: 754 IIELQ 758
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 83.2 bits (204), Expect = 2e-15
Identities = 49/141 (34%), Positives = 78/141 (54%), Gaps = 4/141 (2%)
Query: 657 ISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYDV--FLLTTRVGGLGINLTGANR 714
+S KD + + + G I RQ VD FN E LL+ GG+G+NL G N
Sbjct: 370 VSCKDIQEGGHGYTSITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNH 429
Query: 715 IIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILK 774
+I+ D WNP+ + QA +R +R+GQK+EV I+RL++ +IE+++ Q K L+ +L+
Sbjct: 430 LIMVDLHWNPALEQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLE 489
Query: 775 DPKQKRFFKM--NDLHDLFTL 793
+ K+ +D+ LF L
Sbjct: 490 GSATRGMNKLTNSDIRTLFGL 510
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 82.0 bits (201), Expect = 4e-15
Identities = 76/285 (26%), Positives = 115/285 (39%), Gaps = 51/285 (17%)
Query: 248 DANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATL 307
+A I+E P D+ L YQK + W + Q GGI+ DEMG+GKTIQ I+ +
Sbjct: 122 NAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQSVAGGILADEMGMGKTIQAISLVLAR 181
Query: 308 HHSRKLN-----GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQ----- 357
+ G LV+CP + QW NE + P +L GA K +
Sbjct: 182 REVDRAQFGEAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNY 241
Query: 358 --------IPEEELEKMLMTSNY--GTFTYNDYEKK-----------EKTRTSLESRKSV 396
E E + +M S + + Y KK +T+ +S++
Sbjct: 242 DFVLTTYSTVESEYRRNIMPSKVQCAYCSKSFYPKKLVIHLRYFCGPSAVKTAKQSKQKR 301
Query: 397 KKLLEKVITDG-------------------HIIITTYVGLRLHSEALL-NVRWGYAILDE 436
KK + G + +G ++LL +V+W ILDE
Sbjct: 302 KKTSDSSSQQGKEADAGEDKKLKKSKKKTKQTVEKDQLGSDDKEKSLLHSVKWNRIILDE 361
Query: 437 GHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFV 481
H I+ S+ + L+ R LSGTP+QN + EL+SL F+
Sbjct: 362 AHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFL 406
Score = 78.2 bits (191), Expect = 6e-14
Identities = 44/171 (25%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Query: 601 LKRKKMNDYEDADYGNPARSGKMQVVKQLL--LLWHSQGHKTLLFTQSRQMLDILQEFIS 658
L R K++D++ S K++ +++ + ++ K ++F+Q LD++ +
Sbjct: 650 LNRIKLDDFQT--------STKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLG 701
Query: 659 YKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIII 717
+ +++ G+ + +R + ++KF +P VFL++ + GG+ +NLT A+ + +
Sbjct: 702 K-----CGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFM 756
Query: 718 FDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFL 768
DP WNP+ + QA++R RIGQ + + + R +I ++EE+I Q K+ +
Sbjct: 757 MDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELV 807
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 81.3 bits (199), Expect = 7e-15
Identities = 43/146 (29%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query: 635 SQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD 694
S K ++F+Q +IL+ F+ K + +L+ G+ N R ++++F +P
Sbjct: 1459 SATEKIIIFSQFTTFFEILEHFLKNK----LNFPYLKYIGSMNAQRRSDVINEFYRDPEK 1514
Query: 695 -VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGS 753
+ L++ + G G+ LT AN ++I DP WNP + QA++R +RI Q ++V +++L I S
Sbjct: 1515 RILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDS 1574
Query: 754 IEEKIYHRQIFKQFLSNKILKDPKQK 779
+E++I Q K+ + + + K K
Sbjct: 1575 VEDRISELQKRKKEMVDSAMDPGKIK 1600
Score = 78.6 bits (192), Expect = 5e-14
Identities = 92/383 (24%), Positives = 156/383 (40%), Gaps = 40/383 (10%)
Query: 245 KISDANISEDFMVPGDIFPLLFPYQKTCVQWLCELYQQGC-GGIIGDEMGLGKTIQIIAF 303
K S++ I + + P D+ L +Q+ + WL ++ GG++ D+MGLGKTIQ IA
Sbjct: 923 KQSESIIDGEALTPEDMTVNLLKHQRLGLHWLLQVENSAKKGGLLADDMGLGKTIQAIAL 982
Query: 304 LATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEEL 363
+ L+V P +V++ W E T RA I G G +L
Sbjct: 983 MLANRSEESKCKTNLIVAPVSVLRVWKGELETKVKK-RAKFTTFIFGGSGNGKVKHWRDL 1041
Query: 364 EKM-LMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSE 422
+ + +Y T N+++K + E + + + +S
Sbjct: 1042 ARYDAVLVSYQTLA-NEFKKHWPKKLDGEQNQL------PAVPHIQALNRLKTSNEYYSP 1094
Query: 423 ALLNVRWGYAI-LDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFV 481
N Y I LDEG I+N ++ S C + R +LSGTPIQN++ EL+SL F+
Sbjct: 1095 FFCNDSTFYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFL 1154
Query: 482 YPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRD---LISPYLLRRVKSD 538
+P + ++ +++G + + ALR L++ +LRR K+D
Sbjct: 1155 ------RIPPYHKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKAD 1208
Query: 539 VAKDLP----------------KKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQV 582
P K E+ + L ++ + L++ R V
Sbjct: 1209 KIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKLLNN----STRGSYSSV 1264
Query: 583 LYGIDILRKICNHPDLLDLKRKK 605
L + LR+ C H +L+ + KK
Sbjct: 1265 LTLLLRLRQACCHSELVVMGEKK 1287
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 81.3 bits (199), Expect = 7e-15
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 10/153 (6%)
Query: 607 NDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSD 666
N D + PA K V + + G K ++FTQ +MLD+L+ + + S
Sbjct: 1046 NQQLDKSFSLPATPAKSSVGGVV----NVAGEKAIVFTQWTKMLDLLEAGL-----KSSG 1096
Query: 667 LKFLRMDGTTNIGSRQSLVDKFNNEP-YDVFLLTTRVGGLGINLTGANRIIIFDPDWNPS 725
+++ R DG + +R + V FN P V +++ + LG+N+ A +I+ D WNP+
Sbjct: 1097 IQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPT 1156
Query: 726 TDMQARERAWRIGQKREVTIYRLMIAGSIEEKI 758
T+ QA +RA RIGQ R V + R + ++E++I
Sbjct: 1157 TEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRI 1189
Score = 78.6 bits (192), Expect = 5e-14
Identities = 88/378 (23%), Positives = 144/378 (37%), Gaps = 77/378 (20%)
Query: 265 LFPYQKTCVQWLCELYQQG---CGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVC 321
L +Q+ + W+ + G GGI+ D+ GLGKT+ IA + T + L C
Sbjct: 542 LLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERSTPYLP------C 595
Query: 322 PATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYE 381
CN+ V+ + ++ E+ L KM GT
Sbjct: 596 EEDSKNGGCNQ-----SDHSQVVFNE--------NKVVEDSLCKMRGRPAAGTLIVCPTS 642
Query: 382 KKEKTRTSLESRKSVKKLLEKVITDG-------------HIIITTY--VGLRLHSEA--- 423
+ L + +++ L ++ G ++ITTY V R H +
Sbjct: 643 LMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSKRKHMDCEPV 702
Query: 424 ------LLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSL 477
L V W +LDE I+N + S+ C L + R LSGTPIQN++ +L+S
Sbjct: 703 EFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSY 762
Query: 478 FDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKS 537
F F+ + F + NPI+ Y GYK L+ ++ +LRR K
Sbjct: 763 FRFLKYDPYSSYQTFCETIKNPIS--SYPG-------EGYK---TLQAILKKVMLRRTKD 810
Query: 538 DVAKDLP----------------KKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQ 581
+ P K E + KL + ++ E+ E +++
Sbjct: 811 TLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYA---EAGTVKQNYVN 867
Query: 582 VLYGIDILRKICNHPDLL 599
+L + LR+ C HP L+
Sbjct: 868 ILLMLLRLRQACGHPLLV 885
>Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 220
Score = 79.3 bits (194), Expect = 3e-14
Identities = 57/209 (27%), Positives = 85/209 (40%), Gaps = 42/209 (20%)
Query: 275 WLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFH 334
WL + + G I+GDEMGLGKT Q IA L GP L++CP
Sbjct: 18 WLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPYVCF-------- 69
Query: 335 TWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRK 394
E+LE+ +F N KE+ + K
Sbjct: 70 --------------------------EQLERRNAEICSRSFLCNICSDKEERACLQQDLK 103
Query: 395 SVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQL 454
+ H+++TTY + L + W ++DE H+++N S + T +
Sbjct: 104 QESRF--------HVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEF 155
Query: 455 KTQNRIILSGTPIQNNLTELWSLFDFVYP 483
++L+GTPIQN+L EL+SL FV P
Sbjct: 156 SVVFSLLLTGTPIQNSLQELYSLLSFVEP 184
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 78.2 bits (191), Expect = 6e-14
Identities = 85/346 (24%), Positives = 142/346 (40%), Gaps = 63/346 (18%)
Query: 430 GYAILDEGHKIRNPDSDISLTCKQL--KTQNRIILSGTPIQNNLTELWSLFDFVYPGKLG 487
G I DE H +++ + + L K ++LSGTP + EL+ + V
Sbjct: 226 GVVIADECHYLKSLQTKRTKAIVPLLQKVSRALLLSGTPAVSRPLELYPIISAVDRTIFP 285
Query: 488 TLPVFQQQFANPINMG---GYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKDLP 544
+ ++ N +G Y SN + + LR + ++RR K +V LP
Sbjct: 286 RFAEYGARYCNGRKVGQWYDYKGCSNAE-----ELHYVLRKFL---MIRRTKDEVLGQLP 337
Query: 545 KK--NEMVLFCKLTQYQKSKYL--EFLHSDELMKIRKGKRQVLYGIDILRKICNHPDLLD 600
K ++VL C Q K L E + ++ +M+ R+
Sbjct: 338 PKFRRQVVLECTGRQDDPRKDLVGESVDTNVVMQYRE----------------------- 374
Query: 601 LKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYK 660
A K+ VKQ L +G K ++F +M++ L+ F + +
Sbjct: 375 -----------------AVGLKVDPVKQYLATMVEKGMKFVVFCHHTEMMESLEGFFAER 417
Query: 661 DPELSDLKFLRMDGTTNIGSRQSLVDKFN-NEPYDVFLLTTRVGGLGINLTGANRIIIFD 719
+ + +R+DG+ SR LV KF NE V LL+ G+ LT ++ +
Sbjct: 418 N-----VPMIRIDGSVPSTSRHLLVKKFQENEEVMVALLSITACSTGLTLTAGRAVVFAE 472
Query: 720 PDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFK 765
WNP +QA +R RIGQK V I L+ G+I+E ++ + + K
Sbjct: 473 LYWNPGVLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYVWPKLLSK 518
>Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 619
Score = 77.0 bits (188), Expect = 1e-13
Identities = 37/79 (46%), Positives = 49/79 (61%), Gaps = 1/79 (1%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQK + WL +++ G GI+ DEMGLGKTIQ IAFLA L+ NGP L+V PA+
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 325 VMKQWCNEFHTWWPPFRAV 343
+ W E + W P + +
Sbjct: 556 TIDNWLREVNLWCPTLKVL 574
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 77.0 bits (188), Expect = 1e-13
Identities = 106/505 (20%), Positives = 185/505 (35%), Gaps = 107/505 (21%)
Query: 288 IGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHS 347
I DEMGLGKT+Q IA G +LVVCPA + W E W P +H
Sbjct: 224 IADEMGLGKTLQAIAIAGCFISE----GSILVVCPAVLRFTWAEELERWLPSCLPSDVHL 279
Query: 348 IGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKEKTRTSLESRKSVKKLLEKVITDG 407
+ + +P K+++ S Y+ + RT++ R+
Sbjct: 280 VFGHQDNPAYLPR--WPKVVVIS---------YKMLQHLRTTMLERE------------- 315
Query: 408 HIIITTYVGLRLHSEALLNVRWGYAILDEGHKIR------NPDSDISLTCKQLKTQNRII 461
W I+DE H +R +P ++ K ++ I+
Sbjct: 316 ---------------------WALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIIL 354
Query: 462 LSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAV 521
LSGTP + PG LG + +FA G ++ +
Sbjct: 355 LSGTPSVSR------------PGLLGK---DKYEFAKTYCEVGLVRGIQGKIFQDFSKGT 399
Query: 522 ALRDLI----SPYLLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLH--------- 568
L +L ++RR+K + LP K ++ L + + + +
Sbjct: 400 RLLELNILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSDIALAMAIVSEAKKQKDGA 459
Query: 569 -------SDELMKIRKGKRQVLY---------GIDILRKICNHPDLLDLKRKKMNDYEDA 612
S E + +G + + D ++C L K++ + +
Sbjct: 460 IAEVTEKSHEPDQNARGSNEAGHVNAENSDGPNSDKENQLCGKLSYQQLGIAKLSAFREW 519
Query: 613 DYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRM 672
+P SG +++ K ++F ++LD +QEFI K + F+R+
Sbjct: 520 LSLHPLLSGLDYTPEEID--GDRSSTKMVVFAHHHKVLDGIQEFICDKG-----IGFVRI 572
Query: 673 DGTTNIGSRQSLVDKFN-NEPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQAR 731
DGTT RQ V F + + ++ GG+G++ + A ++ + PS +QA
Sbjct: 573 DGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAE 632
Query: 732 ERAWRIGQKREVTIYRLMIAGSIEE 756
+RA R GQ V +Y +++E
Sbjct: 633 DRAHRRGQTSAVNVYIFCAKDTMDE 657
>7293730 [R] KOG0383 Predicted helicase
Length = 884
Score = 75.9 bits (185), Expect = 3e-13
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 265 LFPYQKTCVQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPAT 324
L PYQ + WL + QG I+ DEMGLGKTIQ + FL +L+ GP LV P +
Sbjct: 721 LHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLS 780
Query: 325 VMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFTYNDYEKKE 384
+ W EF W P F + T I +++ + ++ N +F +
Sbjct: 781 TLVNWEREFELWAPDFYCI------------TYIGDKD-SRAVIRENELSFEEGAIRGSK 827
Query: 385 KTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAILDEGHKIRNPD 444
+R K ++++T+Y + + + L ++ W ++DE H++++
Sbjct: 828 VSRLRTTQYKF------------NVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQ 875
Query: 445 SDISLT 450
S S T
Sbjct: 876 SKKSST 881
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 75.1 bits (183), Expect = 5e-13
Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 27/208 (12%)
Query: 591 KICNHPDLLDLKRKKMNDYEDADYGNPARSGKMQVVKQLLLLWHSQGHKTLLFTQS---- 646
K N +LL++++ K + A+ G + L+ + K L+F +
Sbjct: 1036 KFFNPQELLEIEKLK----------HDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPI 1085
Query: 647 RQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD---VFLLTTRVG 703
R L++ + +K + L + G + R ++DKF EP V L +
Sbjct: 1086 RLFLELFENVFRWKRGR----ELLTLTGDLELFERGRVIDKFE-EPGGQSRVLLASITAC 1140
Query: 704 GLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQI 763
GI+LT A+R+I+ D +WNPS QA RA+R GQ++ V +Y+L+ G++EE Y R
Sbjct: 1141 AEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTT 1200
Query: 764 FKQFLSNKI-----LKDPKQKRFFKMND 786
+K+++S+ I ++DP Q + K+ D
Sbjct: 1201 WKEWVSSMIFSEEFVEDPSQWQAEKIED 1228
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 72.8 bits (177), Expect = 3e-12
Identities = 39/110 (35%), Positives = 63/110 (56%), Gaps = 2/110 (1%)
Query: 668 KFLRMDGTTNIGSRQSLVDKFNN--EPYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPS 725
+ L + G + R ++DKF P V L + GI+LT A+R+I+ D +WNPS
Sbjct: 1109 EILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWNPS 1168
Query: 726 TDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKD 775
QA RA+R GQ++ V +Y+L+ G++EE Y R +K+++S I +
Sbjct: 1169 KTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIFSE 1218
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 71.6 bits (174), Expect = 6e-12
Identities = 46/162 (28%), Positives = 83/162 (50%), Gaps = 12/162 (7%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD---V 695
K+L+ +Q L +++ + + S F R+DG+ R + F N +
Sbjct: 853 KSLVVSQFTTFLSLIEIPL-----KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTI 907
Query: 696 FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIE 755
LL+ + GG+G+NL+ A+R+ + DP WNP+ + Q +R R+GQK+EV I + ++ S+E
Sbjct: 908 MLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVE 967
Query: 756 EKIYHRQIFKQFLSNKILKDPK----QKRFFKMNDLHDLFTL 793
E + Q K+ L+ K + + K+N++ L L
Sbjct: 968 ENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
Score = 69.3 bits (168), Expect = 3e-11
Identities = 48/166 (28%), Positives = 76/166 (44%), Gaps = 24/166 (14%)
Query: 409 IIITTYVGLRLHS------EALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIIL 462
I++TTY + H L ++RW ILDEGH IRNP++ + L+++ R +L
Sbjct: 526 IVLTTY-NILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVL 584
Query: 463 SGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQQFANPINMGGYANASNIQVKTGYKCAVA 522
+GTPIQN+L +LWSL F+ + + P+ MG +Q
Sbjct: 585 TGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQ---------- 634
Query: 523 LRDLISPYLLRRVKSDVAK-----DLPKKNEMVLFCKLTQYQKSKY 563
LI LRR K+ K +LP++ + L+ ++ Y
Sbjct: 635 --SLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY 678
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 69.3 bits (168), Expect = 3e-11
Identities = 43/140 (30%), Positives = 72/140 (50%), Gaps = 6/140 (4%)
Query: 642 LFTQSRQMLDILQEFISYKD---PELSDLKFLRMD--GTTNIGSRQSLVDKFN-NEPYDV 695
L T + + + +++SY L DL + +D G R+ ++ FN N V
Sbjct: 802 LLTGTNDKIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKEREIVLRDFNANNEKRV 861
Query: 696 FLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIE 755
LL+ GG+G+NL AN ++I D WNP + QA++R +R GQ + IYR M ++E
Sbjct: 862 LLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVE 921
Query: 756 EKIYHRQIFKQFLSNKILKD 775
++I Q K ++ +L +
Sbjct: 922 QRIKSLQDCKLEIAKVVLPE 941
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 63.9 bits (154), Expect = 1e-09
Identities = 30/98 (30%), Positives = 59/98 (59%)
Query: 694 DVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGS 753
+V +++ + GG+G+NLT AN + I DP W+ S + QA +R R+GQ++ V + R ++ +
Sbjct: 5 NVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDT 64
Query: 754 IEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLF 791
+EE++ Q K F++ + +++ + D+ LF
Sbjct: 65 VEERMLKIQERKNFITGTLGMSEGKQQVQSIEDIKMLF 102
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 62.0 bits (149), Expect = 5e-09
Identities = 50/197 (25%), Positives = 89/197 (44%), Gaps = 31/197 (15%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD---- 694
K L+F+ +LD+L+ + + + +RM G Q+ + KF +
Sbjct: 1435 KVLVFSSWNDVLDVLEHAFA-----ANSITCIRMKGGRK---SQTAISKFKGSEKETQKT 1486
Query: 695 -----------VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREV 743
V LL + G G+NL A +I+ +P NP+ + QA R RIGQ++
Sbjct: 1487 NSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPT 1546
Query: 744 TIYRLMIAGSIEEKIY----HRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGY 799
++R +++G++EE IY ++ S++ K+ Q +F + DL LF
Sbjct: 1547 LVHRFLVSGTVEESIYKLNRNKNTNLSSFSSRNTKNQDQ-QFLTLKDLESLF---ASPTA 1602
Query: 800 ETEEFNQEIVKQTGNIK 816
ET E Q ++ N++
Sbjct: 1603 ETAEMEQNPGERQENLR 1619
>CE23294 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 540
Score = 60.8 bits (146), Expect = 1e-08
Identities = 53/235 (22%), Positives = 99/235 (41%), Gaps = 58/235 (24%)
Query: 265 LFPYQKTCVQWLCELY-QQGCGGIIGDEMGLGKTIQIIAFL-------ATLHHSRKLNGP 316
L P+Q+ W+ + Q+ GGI+G G GKT +IA + A+ + P
Sbjct: 44 LMPHQEAARDWMIDREAQEPSGGILGLAHGQGKTAIVIALILDQKIKCASNDKKFEQKSP 103
Query: 317 VLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGTFT 376
L++ P ++ QW +EF ++ LE+ ++ +
Sbjct: 104 TLIIVPKRIIYQWYDEF--------------------------KDRLEENALS----VYL 133
Query: 377 YNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTY----------VGLRLHSEALLN 426
Y D E E+RK++ + +++TTY G ++ + L N
Sbjct: 134 YYDDEFS-------EARKNIS---ASELQKYDVVLTTYRNVPVKEKDETGEKVSKQVLQN 183
Query: 427 VRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFV 481
++W +LDE H IR+ ++ S L ++NR ++ P QN+ ++ +L F+
Sbjct: 184 IKWTRIVLDEAHNIRDSNTKKSTAIATLASKNRWCVTAAPFQNSEWDICNLILFL 238
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 60.1 bits (144), Expect = 2e-08
Identities = 53/231 (22%), Positives = 104/231 (44%), Gaps = 25/231 (10%)
Query: 618 ARSGKMQVVKQLLLLWHSQGHKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTN 677
A++G ++ +++L + K L+F ML E + + +++R+DG+ +
Sbjct: 69 AKAGAVKDYIKMML--QNDSLKFLVFAHHLSMLQACTEAVIE-----NKTRYIRIDGSVS 121
Query: 678 IGSRQSLVDKFNNEPYD-VFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWR 736
R LV++F +P V +L+ + G G+ T A+ ++ + W+P QA +RA R
Sbjct: 122 SSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHR 181
Query: 737 IGQKREVTIYRLMIAGSIEEKIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGD 796
IGQ V I+ L+ G+++ ++ K ++ L K+K + D L
Sbjct: 182 IGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFLQFA 241
Query: 797 NGYETEEFNQEIVKQT-----GNIKQNKT------------SETDDFDKLS 830
+ + ++E+ K+ N+K+ T S DD D++S
Sbjct: 242 EAWTPNDSSEELRKEALFTHLLNVKETSTNFLLIAQRLQSESTVDDMDQVS 292
>Hs22048060 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 122
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/58 (46%), Positives = 36/58 (61%)
Query: 287 IIGDEMGLGKTIQIIAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVI 344
I+ DEMGLGKTIQ+I+FL+ L + +L GP L+V P + M W EF W V+
Sbjct: 33 ILADEMGLGKTIQVISFLSYLFNVHQLYGPFLIVVPLSTMTSWQREFEAWDSKMNVVV 90
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 59.3 bits (142), Expect = 3e-08
Identities = 43/150 (28%), Positives = 74/150 (48%), Gaps = 11/150 (7%)
Query: 625 VVKQLLLLWHSQGH-KTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQS 683
+ K LL L H++ + K ++F+Q +LD+L +K E + + F+R DG S+ +
Sbjct: 1191 ISKHLLYLKHNELYPKVVVFSQWLDVLDVL-----HKSFEANGIVFIRFDGK----SKNT 1241
Query: 684 LVDKFNNE-PYDVFLLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKRE 742
+ +F E V L R G+ LT A + + +P N +MQA R RIGQ R
Sbjct: 1242 CLKRFKEERSLQVLTLHARSQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRP 1301
Query: 743 VTIYRLMIAGSIEEKIYHRQIFKQFLSNKI 772
+Y ++ ++E I + + K +K+
Sbjct: 1302 TFVYYYIVEDTVEGHILNLSLTKHEQLDKL 1331
Score = 58.9 bits (141), Expect = 4e-08
Identities = 68/375 (18%), Positives = 152/375 (40%), Gaps = 71/375 (18%)
Query: 213 YQQRLKKWVANRSKDRDYDNQPDIPEWLKPHPKISDANISEDFMVPGDIFPLLFPYQKTC 272
+Q R+ +W+ R +++ + P W D + + + + F +KT
Sbjct: 221 FQMRVLEWMKRREEEKFLTSNDLPPLWYHCKSLFDDRMVYVNHVYGY----MTFSKEKTY 276
Query: 273 VQWLCELYQQGCGGIIGDEMGLGKTIQIIAFLATLHH------------------SRKLN 314
+ ++ GGI+ DEMG+GKT++++ + LHH + K +
Sbjct: 277 LLASGDIR----GGILADEMGMGKTLEVLGLV--LHHQLPISLTDTCTFDQVVGKNVKYS 330
Query: 315 GPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPEEELEKMLMTSNYGT 374
L++ P+T++ QW +E P + + H G + G + + L+ ++ ++Y
Sbjct: 331 KATLIITPSTILDQWLSEIDLHVPSLK--VFHYQGIRKSNGLKSAKIFLDCDIVVTSYSD 388
Query: 375 FTYNDYEKKEKTRTSLESRKSVKKLLEKVITDGHIIITTYVGLRLHSEALLNVRWGYAIL 434
+ + +RT ++ V L++V W +
Sbjct: 389 LRFELLYTESHSRTLRHEKRHVSP----------------------KSPLIDVCWWRICV 426
Query: 435 DEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTELWSLFDFVYPGKLGTLPVFQQ 494
DE + S+++ ++ N +SGTP+++ + +L+ L +F
Sbjct: 427 DEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGL-------------LFLL 473
Query: 495 QFANPINMGGYANASNIQVKTGYKCAVALRDLISPYLLRRVKSDVAKD--LPKKNEMVLF 552
++ +P+ + Y + +Q+ K DL + R K DV ++ LP ++ + +
Sbjct: 474 RY-SPMYL--YKKQAWMQI-IEKKRVREFCDLFGSLVCRHSKQDVEEELKLPPQHRICMT 529
Query: 553 CKLTQYQKSKYLEFL 567
+L+ +++ Y + L
Sbjct: 530 TRLSVVEETNYQDLL 544
>YLR247c [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1556
Score = 57.8 bits (138), Expect = 9e-08
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 639 KTLLFTQSRQMLDILQEFISYKDPELSDLKFLR-MDGTTNIGSRQSLVDKFNNEP-YDVF 696
+ +L++Q + L ++ + + +L ++ L + T N+G ++ F +P
Sbjct: 1381 QVILYSQKTEYLKVIGKVL-----KLYHIEHLACLSNTANVGET---INNFKRQPSVTCL 1432
Query: 697 LLTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEE 756
LL + G G+NL A I + DP N S ++QA R RIGQ E ++ MI ++EE
Sbjct: 1433 LLNVKTLGAGLNLINAKHIFLLDPILNNSDELQAMGRNNRIGQDEETFVWNFMIRNTVEE 1492
Query: 757 KIYHRQIFKQFLSNKILKDPKQKRFFKMNDLHD 789
I + IL++ K+K K D +D
Sbjct: 1493 NILRYKC--------ILEERKRKEKSKKGDKYD 1517
>CE26384 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1610
Score = 56.6 bits (135), Expect = 2e-07
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 638 HKTLLFTQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYDVFL 697
+K +LFT Q + E+++ K +L++L F+ T + + D +E V L
Sbjct: 1429 NKIILFTTIEQTSTQVWEYLT-KILKLANLPFI---APTRATCGKKVFDFDVSEDTKVLL 1484
Query: 698 LTTRVGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEK 757
+ + G+N+TGAN II DP S QA R R GQKR++ +Y L++ GS++ +
Sbjct: 1485 CSLSLCANGLNMTGANHIIFLDPPHLQSVLNQAIGRINRFGQKRDMNVYHLLVDGSLDIE 1544
Query: 758 IYHRQIFKQFLSNKILKDPKQKRFFKMNDLHDLFTLGGDNGYETEEFNQEIVKQTGNIKQ 817
+ + + K + +++ + + D+ +F G N Y + + IV GN+
Sbjct: 1545 L-------RETAKKTYRREDEQKGWTIGDIRSMF---GINYYPVQANIRAIV---GNVDG 1591
Query: 818 N 818
N
Sbjct: 1592 N 1592
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,483,706
Number of Sequences: 60738
Number of extensions: 2697414
Number of successful extensions: 10107
Number of sequences better than 1.0e-05: 157
Number of HSP's better than 0.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9101
Number of HSP's gapped (non-prelim): 467
length of query: 1033
length of database: 30,389,216
effective HSP length: 117
effective length of query: 916
effective length of database: 23,282,870
effective search space: 21327108920
effective search space used: 21327108920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)