ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5889    good          O     KOG4114  Posttranslational modification, protein turnover, chaperones   Cytochrome c oxidase assembly protein PET191

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5889 2022751 2022428 -108 
         (108 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YJR034w [O] KOG4114 Cytochrome c oxidase assembly protein PET191      168   1e-42
CE21412 [O] KOG4114 Cytochrome c oxidase assembly protein PET191       62   1e-10
SPBC16A3.16 [O] KOG4114 Cytochrome c oxidase assembly protein PE...    57   6e-09

>YJR034w [O] KOG4114 Cytochrome c oxidase assembly protein PET191
          Length = 108

 Score =  168 bits (426), Expect = 1e-42
 Identities = 78/108 (72%), Positives = 94/108 (86%)

Query: 1   MGASCNDQRKAVAICLQRSPCVLIERNTPKQCIEDPKLSKDLPELCMAQMKAFLDCKRGI 60
           M ASC DQ+KAVAICLQRSPCV+IER+ P++C+++P+L+KDLPELC+AQMKAFLDCKRGI
Sbjct: 1   MVASCKDQKKAVAICLQRSPCVMIERHNPQECLDNPELNKDLPELCIAQMKAFLDCKRGI 60

Query: 61  VDMTKRFRGNGALSTGKYDEQYEKLSTGDFNAKEEYEKLKLLDSASKN 108
           VDMTKRF GN  LSTGKYD+QYE L  G F+ +EE EKLKLL+S  K+
Sbjct: 61  VDMTKRFTGNAPLSTGKYDQQYENLCKGKFDPREEMEKLKLLNSQQKD 108


>CE21412 [O] KOG4114 Cytochrome c oxidase assembly protein PET191
          Length = 96

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 2  GASCNDQRKAVAICLQRSPCVLIERNTPKQCIEDPKLSKDLPELCMAQMKAFLDCKRGIV 61
          G SC+  R+A+  C++ S CV ++  + K+CI D +    +P+ C A ++ F DCKR +V
Sbjct: 25 GVSCDRLRQALKKCIKNSHCVQVQARSAKECI-DARGDGSVPDKCFAVLQNFTDCKRSLV 83

Query: 62 DMTKRFRG 69
          DM  RFRG
Sbjct: 84 DMRSRFRG 91


>SPBC16A3.16 [O] KOG4114 Cytochrome c oxidase assembly protein PET191
          Length = 85

 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 31/89 (34%), Positives = 53/89 (58%), Gaps = 6/89 (6%)

Query: 1  MGASCNDQRKAVAICLQRSPCVLIERNTPKQCIEDPKLSKDLPELCMAQMKAFLDCKRGI 60
          MG SC   R+ +A CL  S C+ +++ + ++C+++     +LPE C   ++A+ +CKR +
Sbjct: 1  MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKN---KDELPEECKNLIEAYGECKRQM 57

Query: 61 VDMTKRFRGNGALSTGKYDEQYEKLSTGD 89
          +DMTKR+R     +T   D+  EK S  D
Sbjct: 58 LDMTKRYRIAPEKNT---DQDTEKPSNVD 83


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,848,125
Number of Sequences: 60738
Number of extensions: 271505
Number of successful extensions: 629
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 30,389,216
effective HSP length: 84
effective length of query: 24
effective length of database: 25,287,224
effective search space: 606893376
effective search space used: 606893376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)