ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV5933    suspect: Pn   A     KOG1781  RNA processing and modification                                Small Nuclear ribonucleoprotein splicing factor

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV5933 2038582  2038740 53   
         (53 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL147w [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor    58   3e-09
7298334 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor    54   3e-08
Hs7706423 [A] KOG1781 Small Nuclear ribonucleoprotein splicing f...    52   2e-07
At2g03870 [A] KOG1781 Small Nuclear ribonucleoprotein splicing f...    47   4e-06

>YNL147w [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor
          Length = 107

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 29/53 (54%), Positives = 40/53 (74%), Gaps = 2/53 (3%)

Query: 1   MNLVLDETVEYARDPEDE--TIIHKDQAKKIGLVVIRGTALLSLCSLEGAEII 51
           MNLVLD+TVEY  +P+DE  T +    A+K+GL VIRGT L+SL S EG++++
Sbjct: 51  MNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSDVL 103


>7298334 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor
          Length = 110

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query: 1   MNLVLDETVEYARDPEDETIIHKDQAKKIGLVVIRGTALLSLCSLEGAEII 51
           +NLVLD TVEY RD ++   + ++Q + +GLVV RGTAL+ +C  +G E I
Sbjct: 53  LNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLICPQDGVESI 103


>Hs7706423 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor
          Length = 103

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 1/51 (1%)

Query: 1  MNLVLDETVEYARDPEDETIIHKDQAKKIGLVVIRGTALLSLCSLEGAEII 51
          +NLVLD T+EY RDP+D+  + +D  +++GLVV RGT+++ +C  +G E I
Sbjct: 44 LNLVLDGTIEYMRDPDDQYKLTED-TRQLGLVVCRGTSVVLICPQDGMEAI 93


>At2g03870 [A] KOG1781 Small Nuclear ribonucleoprotein splicing factor
          Length = 99

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)

Query: 1  MNLVLDETVEYARDPEDETIIHKDQAKKIGLVVIRGTALLSLCSLEGAEII 51
          +NLVLDE VE+ RD  D+ +   DQ +++GL+V RGTA++ +   +G E I
Sbjct: 40 LNLVLDEAVEFVRD-HDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTEEI 89


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.136    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,901,275
Number of Sequences: 60738
Number of extensions: 77070
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 4
length of query: 53
length of database: 30,389,216
effective HSP length: 29
effective length of query: 24
effective length of database: 28,627,814
effective search space: 687067536
effective search space used: 687067536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)