ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6001 good K KOG2832 Transcription TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6001 2060948 2059509 -480
(480 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL063w [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 452 e-127
Hs17483190 [K] KOG2832 TFIIF-interacting CTD phosphatase includi... 139 1e-32
At1g55900 [K] KOG2832 TFIIF-interacting CTD phosphatase includin... 137 4e-32
CE06481 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 124 3e-28
7302145 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 122 9e-28
7291953 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 118 2e-26
SPBC17A3.01c [K] KOG2832 TFIIF-interacting CTD phosphatase inclu... 111 2e-24
7290361 [K] KOG2832 TFIIF-interacting CTD phosphatase including ... 105 2e-22
Hs7705461 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 100 5e-21
At5g11860 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 96 9e-20
Hs7661722 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 95 2e-19
Hs22064567 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 95 2e-19
Hs5031775 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 94 6e-19
Hs10864009 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 93 8e-19
CE02737 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 93 1e-18
Hs19923330 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 92 1e-18
YLR019w [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 92 2e-18
SPAC2F7.02c [K] KOG1605 TFIIF-interacting CTD phosphatase includ... 91 3e-18
At5g45700 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 91 4e-18
7294201 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 89 1e-17
7295520 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 88 2e-17
CE22072 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 87 6e-17
SPBC3B8.10c [K] KOG1605 TFIIF-interacting CTD phosphatase includ... 84 5e-16
7304015 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 83 8e-16
ECU10g1270 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 83 1e-15
At1g29780 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 79 1e-14
YLL010c [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 79 2e-14
At1g29770 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 76 1e-13
7292341 [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 75 2e-13
At4g18140 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 75 3e-13
At5g46410 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 73 8e-13
YHR004c [K] KOG1605 TFIIF-interacting CTD phosphatase including ... 69 2e-11
At3g55960 [K] KOG1605 TFIIF-interacting CTD phosphatase includin... 65 2e-10
Hs17461521 [K] KOG1605 TFIIF-interacting CTD phosphatase includi... 59 1e-08
ECU10g0580 [K] KOG2832 TFIIF-interacting CTD phosphatase includi... 55 2e-07
>YPL063w [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 476
Score = 452 bits (1164), Expect = e-127
Identities = 248/483 (51%), Positives = 296/483 (60%), Gaps = 10/483 (2%)
Query: 1 MLSIARVSLLRNAR---MVPVHAMQMRPVVVRRSLHNGSLLLQKKNEKNEAPKSILDDDM 57
MLSI R S+ N+R +VP A + V R L +K K++ PKSIL DDM
Sbjct: 1 MLSILRNSVRLNSRALRVVPSAANTLTSVQASRRLLTSYSSFLQKETKDDKPKSILTDDM 60
Query: 58 LARAGVEVEGNEAGSKDKSGRAGEAGESAEQXXXXXXXXXXXXXXXXXXXXXIKRERYAN 117
L +AGV+V+ G +++ +GE GE + IKRE+YAN
Sbjct: 61 LFKAGVDVDEKGQGKNEET--SGEGGEDKNEPSSKSEKSRRKRQTSTD----IKREKYAN 114
Query: 118 WFYIXXXXXXXXXXXXMARDWDSDESEELKKEIPNGYTPALMYKRMKRRWESIFTFFQEX 177
WFYI MARDW+ ESEELKK+I NGYT +LMYKR K R+ S+FT+FQE
Sbjct: 115 WFYIFSLSALTGTAIYMARDWEPQESEELKKDIDNGYTLSLMYKRFKARFNSMFTYFQEP 174
Query: 178 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEWTQQSGWRTAKRPGVDYFLGYLSQYYEI 237
VHSEW+Q+ GWRTAKRPG DYFLGYLSQYYEI
Sbjct: 175 PFPDLLPPPPPPPYQRPLTLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLSQYYEI 234
Query: 238 VLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDT 297
VLFSSNYMMY++KIAEKLDPIHAF++YNLFKEHC+YKDGVHIKDLSKLNRDL KV+IIDT
Sbjct: 235 VLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDT 294
Query: 298 DENSFKLQPENAIYLEPWDGKADDRLLRLIPFLEYLATQQVSDVRPILKSFPDNKNIPEA 357
D NS+KLQPENAI +EPW+G+ADD+L+RLIPFLEYLATQQ DVRPIL SF D KN+ E
Sbjct: 295 DPNSYKLQPENAIPMEPWNGEADDKLVRLIPFLEYLATQQTKDVRPILNSFEDKKNLAEE 354
Query: 358 FEKRVQVLKEKFERDERVKNDKNLFLKXXXXXXXXTKPKFPLDLIREEGEKNYVRFMXXX 417
F+ RV+ LK+KF D + KFPLDLI EEG+KNY+ FM
Sbjct: 355 FDHRVKKLKDKFYGDHK-SGGNWAMTALGLGNSLGGSTKFPLDLIHEEGQKNYLMFMKMI 413
Query: 418 XXXXXXXXXXXXAMGQQTFTLKDYVEGNIPTPXXXXXXXXXXXXXIEAQFEEQKKLKAQQ 477
MG QTFTLKDYVEGN+P+P ++A FEE+KK K
Sbjct: 414 EEEKEKIRIQQEQMGGQTFTLKDYVEGNLPSPEEQMKIQLEKQKEVDALFEEEKKKKKIA 473
Query: 478 GSK 480
SK
Sbjct: 474 ESK 476
>Hs17483190 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 456
Score = 139 bits (349), Expect = 1e-32
Identities = 75/184 (40%), Positives = 113/184 (60%), Gaps = 9/184 (4%)
Query: 206 VHSEWTQQSGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYN 265
+H EW+ +GWR KRPG++ L+ YEIV+F+S M A + + +DP H FI+Y
Sbjct: 262 LHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYR 320
Query: 266 LFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADDR-LL 324
LF++ Y DG H+KD+S LNRD +V+++D + +F+LQP N + L PWDG +DDR LL
Sbjct: 321 LFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLL 380
Query: 325 RLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDERV-----KNDK 379
L FL+ +A V DVR +L+ + + AF++R L++ E +R+ N +
Sbjct: 381 DLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSRLEQ--EEQQRLAELSKSNKQ 438
Query: 380 NLFL 383
NLFL
Sbjct: 439 NLFL 442
>At1g55900 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 370
Score = 137 bits (345), Expect = 4e-32
Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 3/157 (1%)
Query: 206 VHSEWTQQSGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYN 265
++++W ++ GWRT KRPGVD FL +L ++YEIV++S MY + EKLDP + +I Y
Sbjct: 202 LYTDWKRERGWRTFKRPGVDAFLEHLGKFYEIVVYSDQMEMYVLPVCEKLDP-NGYIRYK 260
Query: 266 LFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADD-RLL 324
L + Y++G H +DLSKLNRD K+L + + LQPEN++ ++P+ +ADD L+
Sbjct: 261 LARGATKYENGKHYRDLSKLNRDPKKILFVSANAFESTLQPENSVPIKPYKLEADDTALV 320
Query: 325 RLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKR 361
LIPFLEY+A +D+RP+L SF + K+I + F R
Sbjct: 321 DLIPFLEYVARNSPADIRPVLASF-ERKDIAKEFIDR 356
>CE06481 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 452
Score = 124 bits (311), Expect = 3e-28
Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 206 VHSEWTQQSGWRTAKRPGVDYFLGYLSQ-YYEIVLFSSNYMMYAEKIAEKLDPIHAFITY 264
VH EWT ++G+R KRP +DYFL + +E+V++SS MM A + + DP I Y
Sbjct: 259 VHPEWTYKTGYRFLKRPALDYFLDVIGYPNFEVVIYSSESMMTAAPVVDSFDPKQR-IMY 317
Query: 265 NLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADD-RL 323
LF++ Y +G H+KDLSKLNRDL KV+ ID D S +L PEN + + W G DD L
Sbjct: 318 KLFRDCTKYMNGHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVPEWKGNMDDTSL 377
Query: 324 LRLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDERVKNDKNL 381
+ L L+ + DVRP+L+ + + + F +R L ++ E+ ++ +D ++
Sbjct: 378 VDLAELLKTIHLSDAEDVRPMLQYYSQYDDPAKEFRRRAVYLSQQEEQKKQQPDDSSM 435
>7302145 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 343
Score = 122 bits (307), Expect = 9e-28
Identities = 67/173 (38%), Positives = 104/173 (59%), Gaps = 4/173 (2%)
Query: 206 VHSEWTQQSGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYN 265
VH +WT Q+GWR KRPGVDYFL S+ +EIV+++S M A + + LDP + +I Y
Sbjct: 151 VHPDWTYQTGWRFKKRPGVDYFLQQCSRNFEIVIYTSEQGMTAFPLLDALDP-YGYIKYR 209
Query: 266 LFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADD-RLL 324
L + +G H K+L LNRDL +V+++D D + L P+N++ L W G DD +L
Sbjct: 210 LVRGATDLVEGQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVLTKWLGNDDDVQLF 269
Query: 325 RLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDERVKN 377
L FL+ +A QV+DVR +L+ + ++ E F+ + L+E + E ++N
Sbjct: 270 DLTAFLQLIAEHQVNDVREVLRYYRQFEDPMEQFKDNQRRLQE--QSQESIQN 320
>7291953 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 409
Score = 118 bits (295), Expect = 2e-26
Identities = 61/176 (34%), Positives = 97/176 (54%), Gaps = 2/176 (1%)
Query: 206 VHSEWTQQSGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYN 265
VH +WT ++GWR KRPGVD FL ++Y+EIV++++ + + + LDP + I Y
Sbjct: 221 VHPDWTYETGWRFKKRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVDALDP-NGCIMYR 279
Query: 266 LFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADD-RLL 324
L ++ + G H+K+L LNRDL +V+++D D NS K P N+ + W G +D L
Sbjct: 280 LVRDSTHFDGGHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPRWSGNDNDTTLF 339
Query: 325 RLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDERVKNDKN 380
L FL L T ++ DVR +L+ + + F + + L E +E K K+
Sbjct: 340 ELTSFLSVLGTSEIDDVREVLQYYNQFSDSLSQFRENQRKLGELMHAEEVEKTSKS 395
>SPBC17A3.01c [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 215
Score = 111 bits (278), Expect = 2e-24
Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Query: 256 DPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW 315
DP H I+ L +E Y+ G IKDLS LNRDL +V++IDT+ S+ QP+NAI + PW
Sbjct: 1 DPYHVSISAVLTRESSKYEKGKVIKDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAMAPW 60
Query: 316 DGKADDR-LLRLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDER 374
G D+ L+ LIP LE++A + DVRP+LKS+ KNIP + +R + L+ K D
Sbjct: 61 TGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKSY-QGKNIPLEYARREEKLRTKLIEDWN 119
Query: 375 VKNDKNLFLKXXXXXXXXTKPKFPLDLIREEGEKNYVRF 413
K K PK +D+ RE + Y F
Sbjct: 120 EKKKKGSSFLFGGRSVSEEPPKLIIDIQRERQKAAYAEF 158
>7290361 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 415
Score = 105 bits (261), Expect = 2e-22
Identities = 61/175 (34%), Positives = 93/175 (52%), Gaps = 15/175 (8%)
Query: 206 VHSEWTQQSGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYN 265
VH +WT Q+GWR KRPGVD+FL ++ +EIV+F++ M I + LDP + +I Y
Sbjct: 240 VHPDWTYQTGWRFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDP-NGYIMYR 298
Query: 266 LFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADD-RLL 324
L ++ + DG H V+++D D N+ K+ P+N L W G DD +LL
Sbjct: 299 LVRDATHFVDGHH-------------VIVVDWDANATKMHPDNTFGLARWHGNDDDGQLL 345
Query: 325 RLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDERVKNDK 379
LI FL+ +A V DVR +L + + F + + L E+ ER++ K
Sbjct: 346 DLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLAEQMLEAERIEQSK 400
>Hs7705461 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 466
Score = 100 bits (249), Expect = 5e-21
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIK 280
RP FL +SQ YEI+LF+++ +YA+K+ LDP + + LF+EHC+ G +IK
Sbjct: 329 RPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVCVQGNYIK 388
Query: 281 DLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQVS 339
DL+ L RDL K +IID +F Q N I +E W K D+ LL+LIPFLE L +
Sbjct: 389 DLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKL-VELNE 447
Query: 340 DVRPILK 346
DVRP ++
Sbjct: 448 DVRPHIR 454
>At5g11860 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 305
Score = 96.3 bits (238), Expect = 9e-20
Identities = 47/126 (37%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIK 280
RP + F+ +S+ +EI++F+++ +YAE++ LDP + ++++ C++ DG ++K
Sbjct: 153 RPHLKEFMERVSRLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVYRDSCVFFDGNYLK 212
Query: 281 DLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQVS 339
DLS L RDL +V+I+D +F Q EN + +E W + +D LL L+PFLE L V
Sbjct: 213 DLSVLGRDLSRVIIVDNSPQAFGFQVENGVPIESWFNDPSDKELLHLLPFLESLI--GVE 270
Query: 340 DVRPIL 345
DVRP++
Sbjct: 271 DVRPMI 276
>Hs7661722 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 244
Score = 95.1 bits (235), Expect = 2e-19
Identities = 46/127 (36%), Positives = 81/127 (63%), Gaps = 3/127 (2%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VD+FL +SQ+YE+V+F+++ +Y +A+KLD + + +++HC + G +I
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
KDLS ++ DL ++I+D +++ P+NAI ++ W +D LL L+P L+ A +
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 339 SDVRPIL 345
+DVR +L
Sbjct: 228 ADVRSVL 234
>Hs22064567 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 244
Score = 95.1 bits (235), Expect = 2e-19
Identities = 46/127 (36%), Positives = 81/127 (63%), Gaps = 3/127 (2%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VD+FL +SQ+YE+V+F+++ +Y +A+KLD + + +++HC + G +I
Sbjct: 110 KRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYI 169
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
KDLS ++ DL ++I+D +++ P+NAI ++ W +D LL L+P L+ A +
Sbjct: 170 KDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLD--ALRFT 227
Query: 339 SDVRPIL 345
+DVR +L
Sbjct: 228 ADVRSVL 234
>Hs5031775 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 340
Score = 93.6 bits (231), Expect = 6e-19
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VD FL + Q +E VLF+++ YA+ +A+ LD F LF+E C++ G ++
Sbjct: 211 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRA-RLFRESCVFHRGNYV 269
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQ 336
KDLS+L R+L KV+I+D S+ PENA+ ++ W D D LL LIPF E L+ +
Sbjct: 270 KDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSRE 327
>Hs10864009 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 261
Score = 93.2 bits (230), Expect = 8e-19
Identities = 52/128 (40%), Positives = 79/128 (61%), Gaps = 4/128 (3%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VD FL + + +E VLF+++ YA+ +A+ LD AF LF+E C++ G ++
Sbjct: 131 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRA-RLFRESCVFHRGNYV 189
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
KDLS+L RDL +VLI+D S+ P+NA+ + W D +D L L+PF E L+ +V
Sbjct: 190 KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS--RV 247
Query: 339 SDVRPILK 346
DV +L+
Sbjct: 248 DDVYSVLR 255
>CE02737 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 246
Score = 92.8 bits (229), Expect = 1e-18
Identities = 48/140 (34%), Positives = 84/140 (59%), Gaps = 7/140 (5%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
+RP VDYFL +SQ+YE+V+F+++ +Y +A++LD + F++HC + G +
Sbjct: 106 ERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLDRGRGILKRRYFRQHCTMEVGGYT 165
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADDR-LLRLIPFLEYLATQQV 338
KDLS ++ DL + I+D +++ P NAI + W +D LL L+PFL+ A +
Sbjct: 166 KDLSAIHPDLSSICILDNSPGAYRKFPHNAIPIPSWFSDPNDTCLLNLLPFLD--ALRFT 223
Query: 339 SDVRPIL----KSFPDNKNI 354
SDVR +L ++ P+ +++
Sbjct: 224 SDVRSVLSRNMQALPETQSV 243
>Hs19923330 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 283
Score = 92.4 bits (228), Expect = 1e-18
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VD FL + + +E VLF+++ YA+ + + LD F LF+E C++ G ++
Sbjct: 142 KRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRA-RLFRESCVFHQGCYV 200
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLA 334
KDLS+L RDL K LI+D S+ PENA+ ++ W D AD LL LIP E L+
Sbjct: 201 KDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELS 256
>YLR019w [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 397
Score = 92.0 bits (227), Expect = 2e-18
Identities = 49/127 (38%), Positives = 78/127 (60%), Gaps = 2/127 (1%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRPGVD FL +SQ YE+V+F+++ YA + + LDP + I + LF+E C +G +I
Sbjct: 268 KRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDP-NGTIHHRLFREACYNYEGNYI 326
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
K+LS++ R L + +I+D S+ P++A+ + W D+ LL +IP LE L++ V
Sbjct: 327 KNLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNELLDIIPLLEDLSSGNV 386
Query: 339 SDVRPIL 345
DV +L
Sbjct: 387 LDVGSVL 393
>SPAC2F7.02c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 325
Score = 91.3 bits (225), Expect = 3e-18
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 217 RTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDG 276
R KRPGVD FL + +EIV+F+++ YA+ + + LD H I + LF+E C +G
Sbjct: 195 RVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHV-IRHRLFREACCNYEG 253
Query: 277 VHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLAT 335
+KDLS+L R+L +IID +S+ P +A+ + W + D L+ LIPFLE+LA
Sbjct: 254 NFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDMELIDLIPFLEHLA- 312
Query: 336 QQVSDVRPIL 345
+V DV +L
Sbjct: 313 -RVPDVSTVL 321
>At5g45700 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 272
Score = 90.9 bits (224), Expect = 4e-18
Identities = 48/129 (37%), Positives = 76/129 (58%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRPGVD FL + + Y+IV+F++ YA + +KLDP I+ + +++ C DG +
Sbjct: 139 KRPGVDEFLKKIGEKYQIVVFTAGLREYASLVLDKLDPERRVISRSFYRDACSEIDGRLV 198
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADDRLLRLIPFLEYLATQQVS 339
KDL + RDL +V+I+D + NS+ LQPENA ++P+ +D L+ + Y +
Sbjct: 199 KDLGFVMRDLRRVVIVDDNPNSYALQPENAFPIKPFSDDLEDVELKKLGEFLYGDCVKFE 258
Query: 340 DVRPILKSF 348
D+R LK F
Sbjct: 259 DMRVALKEF 267
>7294201 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 302
Score = 89.4 bits (220), Expect = 1e-17
Identities = 48/116 (41%), Positives = 71/116 (60%), Gaps = 2/116 (1%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VD FL + + YE VLF+++ YA+ +A+ LD + F LF+E C+Y G +I
Sbjct: 103 KRPHVDEFLQKMGELYECVLFTASLAKYADPVADLLDKWNVFRA-RLFRESCVYYRGNYI 161
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLA 334
KDL++L RDL K++I+D S+ P+NA+ ++ W D D L LIP E L+
Sbjct: 162 KDLNRLGRDLQKIVIVDNSPASYIFHPDNAVPVKSWFDDVTDCELRELIPLFEKLS 217
>7295520 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 243
Score = 88.2 bits (217), Expect = 2e-17
Identities = 46/127 (36%), Positives = 75/127 (58%), Gaps = 3/127 (2%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP VDYFL +SQ+Y++V+F+++ +Y +A+KLD + +++HC G +
Sbjct: 109 KRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYYRQHCTPDYGSYT 168
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
KDLS + DL ++ IID +++ P NAI ++ W D LL L+P L+ A +
Sbjct: 169 KDLSAICSDLNRIFIIDNSPGAYRCFPNNAIPIKSWFSDPMDTALLSLLPMLD--ALRFT 226
Query: 339 SDVRPIL 345
+DVR +L
Sbjct: 227 NDVRSVL 233
>CE22072 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 287
Score = 87.0 bits (214), Expect = 6e-17
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIK 280
RP + FL +++ +EI++F+++ +YA K+ + LDP I + LF+EHC+ G ++K
Sbjct: 106 RPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHCVCVFGNYVK 165
Query: 281 DLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQVS 339
DL+ L RD K +I+D SF Q +N I +E W + D LL+L FLE + T
Sbjct: 166 DLTILGRDPSKTMILDNAVQSFAYQLDNGIPIESWFHDRNDTELLKLCSFLEAIPTLG-R 224
Query: 340 DVRPILK 346
DVR IL+
Sbjct: 225 DVREILR 231
>SPBC3B8.10c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 476
Score = 84.0 bits (206), Expect = 5e-16
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP +DYFL +SQ++ ++LF+++ YA+ I + L+ +++HC D +
Sbjct: 346 KRPHLDYFLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKRYYRQHCALVDSSFV 405
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
KD+S N L +++IID S+ ENAI +E W +D LL L+ FL A Q V
Sbjct: 406 KDISICNIHLSRIMIIDNSPASYNAHKENAIPIEGWISDPSDVDLLNLLSFLH--ALQYV 463
Query: 339 SDVRPIL 345
DVR +L
Sbjct: 464 HDVRDLL 470
>7304015 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 208
Score = 83.2 bits (204), Expect = 8e-16
Identities = 45/131 (34%), Positives = 80/131 (60%), Gaps = 3/131 (2%)
Query: 216 WRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKD 275
+R KRP VD FL ++S++Y++V+++++ +YA ++ + LD IT +++HC
Sbjct: 62 FRVFKRPHVDEFLDFVSKWYDLVIYTASLEVYAAQVVDHLDAGRGLITRRFYRQHCRASS 121
Query: 276 GVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDGKADD-RLLRLIPFLEYLA 334
+ KDL+ + D+ VLIID +++ P+NAI ++ + DD LL+++PFL+ A
Sbjct: 122 PMVSKDLTLVTPDMSGVLIIDNSPYAYRDFPDNAIPIKTFIYDPDDTELLKMLPFLD--A 179
Query: 335 TQQVSDVRPIL 345
+ DVR IL
Sbjct: 180 LRFTKDVRSIL 190
>ECU10g1270 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 226
Score = 82.8 bits (203), Expect = 1e-15
Identities = 42/114 (36%), Positives = 73/114 (63%), Gaps = 2/114 (1%)
Query: 221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIK 280
RP F+ YE+V+F+S YA+K+ +++D + I+ L++E C + +G ++K
Sbjct: 89 RPYAAEFISAAEALYEVVIFTSAKREYAKKVVDRIDT-NKNISRILYRESCTFTNGRYVK 147
Query: 281 DLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWDG-KADDRLLRLIPFLEYL 333
DL K+ R L +V++ID + S++LQP N I++ P+ G + DD LL+++ FLE L
Sbjct: 148 DLRKVGRSLDRVILIDDNPYSYELQPRNGIHIPPYTGAEDDDSLLKILRFLEGL 201
>At1g29780 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 221
Score = 79.3 bits (194), Expect = 1e-14
Identities = 43/114 (37%), Positives = 71/114 (61%), Gaps = 3/114 (2%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRPGV FL L + Y++V+F++ YA ++ +KLD + I+ L+++ C +G ++
Sbjct: 91 KRPGVTEFLERLGENYKVVVFTAGLEEYASQVLDKLDK-NGVISQRLYRDSCTEVNGKYV 149
Query: 280 KDLS-KLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLE 331
KDLS + +DL LI+D + +S+ LQPEN + ++ + D D LL L+ FLE
Sbjct: 150 KDLSLVVGKDLRSALIVDDNPSSYSLQPENGVPIKAFVDDLKDQELLNLVEFLE 203
>YLL010c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 427
Score = 79.0 bits (193), Expect = 2e-14
Identities = 44/127 (34%), Positives = 74/127 (57%), Gaps = 2/127 (1%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRPGV+ FL + + +E+V+F+++ Y + + + LD I + LF+E C +G +I
Sbjct: 298 KRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDT-DKVIHHRLFREACYNYEGNYI 356
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQV 338
K+LS++ R L ++I+D S+ P++AI + W D+ LL +IP LE L+ +
Sbjct: 357 KNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNELLDIIPLLEDLSVKTS 416
Query: 339 SDVRPIL 345
DV IL
Sbjct: 417 LDVGKIL 423
>At1g29770 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 278
Score = 75.9 bits (185), Expect = 1e-13
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRPGV FL +S+ Y + +F++ YA ++ +KLD + I+ L+++ C +G +
Sbjct: 145 KRPGVTEFLERISKNYRVAIFTAGLPEYASQVLDKLDK-NRVISQRLYRDSCTEVNGRYA 203
Query: 280 KDLSKL-NRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPFLEYLATQQ 337
KDLS + DLG VL++D + S+ LQP+N + ++P+ D D L++L F + Q
Sbjct: 204 KDLSLVAKNDLGSVLLVDDNPFSYSLQPDNGVPIKPFMDDMEDQELMKLAEFFD--GCYQ 261
Query: 338 VSDVR 342
D+R
Sbjct: 262 YEDLR 266
>7292341 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 236
Score = 75.1 bits (183), Expect = 2e-13
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHI 279
KRP +D+FL +S++Y++ +F+S +YA I + LD + L+++HC+ + G
Sbjct: 101 KRPYLDHFLDRVSKWYDLTVFTSGAEIYASPILDFLDRGRGILNSRLYRQHCIEQFGKWS 160
Query: 280 KDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWD-GKADDRLLRLIPFLEYLATQQV 338
K + DL V+++D ENAI ++ ++ G D+ L+ L+PFL+ A + +
Sbjct: 161 KSVLLACPDLSNVVLLDNSSTECSFNAENAILIKSYEIGCRDEALINLLPFLD--ALRFM 218
Query: 339 SDVRPILK 346
DVR +LK
Sbjct: 219 KDVRSMLK 226
>At4g18140 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 307
Score = 74.7 bits (182), Expect = 3e-13
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 255 LDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEP 314
LDP F++ +++ C+ DG++ KDL+ L DL KV I+D ++LQ N I ++
Sbjct: 210 LDPDGKFVSQRFYRDSCILSDGIYTKDLTVLGLDLAKVAIVDNCPQVYRLQINNGIPIKS 269
Query: 315 W-DGKADDRLLRLIPFLEYLATQQVSDVRPILKSFPDNK 352
W D DD L+ L+PFLE LA +DVRP++ NK
Sbjct: 270 WYDDPTDDGLITLLPFLETLA--DANDVRPVIAKRFGNK 306
>At5g46410 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 293
Score = 73.2 bits (178), Expect = 8e-13
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 255 LDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEP 314
LDP FI+ +++ C+ DG++ KDL+ L DL KV IID ++LQ N I ++
Sbjct: 196 LDPDGKFISQRFYRDSCILLDGIYTKDLTVLGLDLAKVAIIDNCPQVYRLQINNGIPIKS 255
Query: 315 W-DGKADDRLLRLIPFLEYLATQQVSDVRPIL 345
W D DD L+ ++PFLE LA DVRPI+
Sbjct: 256 WYDDPTDDGLITILPFLETLAV--ADDVRPII 285
>YHR004c [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 446
Score = 68.6 bits (166), Expect = 2e-11
Identities = 52/149 (34%), Positives = 83/149 (54%), Gaps = 19/149 (12%)
Query: 214 SGWRTA----KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLD-PIHAFITYNLFK 268
SG RT KRP D FL +S++Y++++F+++ YA+ + + L+ + + ++
Sbjct: 288 SGIRTLYFIHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYR 347
Query: 269 EHCLYKDGV-HIKDLS--KLNRDLGK--------VLIIDTDENSFKLQPENAIYLEPW-D 316
C+ +DGV +IKDLS K + + GK V+IID S+ + +NAI +E W
Sbjct: 348 SDCVLRDGVGYIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWIS 407
Query: 317 GKADDRLLRLIPFLEYLATQQVSDVRPIL 345
D LL L+PFLE A + +DVR IL
Sbjct: 408 DPTDTDLLNLLPFLE--AMRYSTDVRNIL 434
>At3g55960 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 305
Score = 65.1 bits (157), Expect = 2e-10
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 14/148 (9%)
Query: 220 KRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCL---YKDG 276
+RPG+ FL LS++ +++LF++ YA + +++D +T L++ + Y+D
Sbjct: 157 ERPGLHEFLEQLSEFADLILFTAGLEGYARPLVDRIDT-RKVLTNRLYRPSTVSTQYRD- 214
Query: 277 VHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPWD-GKADDRLLR--LIPFLEYL 333
H+KDL ++++ + +I+D + SF LQP N I + G+ +D L ++P L+ L
Sbjct: 215 -HVKDLLSTSKNMCRTVIVDNNPFSFLLQPSNGIPCIAFSAGQPNDTQLLDVILPLLKQL 273
Query: 334 ATQQVSDVRPILKSFPDNKNIPEAFEKR 361
+ + DVRP L D +PE FEK+
Sbjct: 274 SEE--DDVRPTLY---DRFRMPEWFEKQ 296
>Hs17461521 [K] KOG1605 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 222
Score = 59.3 bits (142), Expect = 1e-08
Identities = 36/98 (36%), Positives = 51/98 (51%), Gaps = 1/98 (1%)
Query: 237 IVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIID 296
+V S N +YA + +DP + + F EHC+ G HIK+L+ L RDL K +IID
Sbjct: 101 VVHCSLNEKVYAGTLLNIVDPKKQLVRHRFFHEHCVCVQGNHIKNLNILARDLSKTVIID 160
Query: 297 TDENSFKLQPENAIYLEP-WDGKADDRLLRLIPFLEYL 333
+F N +E + K D+ LL+LI F E L
Sbjct: 161 NSPQTFAYHLSNGTPIESGFMDKNDNELLKLISFPEKL 198
>ECU10g0580 [K] KOG2832 TFIIF-interacting CTD phosphatase including
NLI-interacting factor (involved in RNA polymerase II
regulation)
Length = 309
Score = 55.1 bits (131), Expect = 2e-07
Identities = 43/141 (30%), Positives = 68/141 (47%), Gaps = 9/141 (6%)
Query: 221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIK 280
R D FL + + YE+V S + ++ + ++DP + I+Y ++ + H
Sbjct: 107 RAFADLFLFHAAHIYELVHVSGSPGSFSRLLLHRIDP-YGCISYKVYCKDKKTFSSEH-- 163
Query: 281 DLSKLNRDLGKVLIIDTDENSF-KLQPENAIYLEPWDGKADDRLLRLIPFLEYLATQQVS 339
LNR L +V+++ T EN + K N I LE W G + LL L+ FL L +
Sbjct: 164 ----LNRPLQRVVVVSTRENEYHKDFDGNTIKLERWSGDPEHGLLDLLNFLHSLHFMGIK 219
Query: 340 DVRPILKSFPDNKNIPEAFEK 360
D R L+S+ K+ AFEK
Sbjct: 220 DFRGTLRSYL-GKDFCSAFEK 239
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,389,958
Number of Sequences: 60738
Number of extensions: 888604
Number of successful extensions: 2533
Number of sequences better than 1.0e-05: 35
Number of HSP's better than 0.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2468
Number of HSP's gapped (non-prelim): 36
length of query: 480
length of database: 30,389,216
effective HSP length: 110
effective length of query: 370
effective length of database: 23,708,036
effective search space: 8771973320
effective search space used: 8771973320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)