ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactV6035    suspect: LH   S     KOG0858  Function unknown                                               Predicted membrane protein

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV6035 2072720 2072154 -189 
         (189 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBR201w [S] KOG0858 Predicted membrane protein                         76   3e-14

>YBR201w [S] KOG0858 Predicted membrane protein
          Length = 211

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 1   MDLIRDIPIITRCWGIGILMLNLALWCNFLTVYDVAYSWDAVYYRKQYLRLIYGLF-YIK 59
           ++L+ DIP++TR W IG L+L+       +    V YS+D V+ + QY RL+Y +F Y  
Sbjct: 6   LNLLGDIPLVTRLWTIGCLVLSGLTSLRIVDPGKVVYSYDLVFKKGQYGRLLYSIFDYGA 65

Query: 60  LSPDLIGNAVVALSSLQLIEQTTTDKRKLALKILCLYLSVVFFIVYSDLPLSIGQALGIN 119
            +   + N  V+ + L  +E +   +RK    I  L + +V          S+G  L  N
Sbjct: 66  FNWISMINIFVSANHLSTLENSFNLRRKFCWIIFLLLVILVKMTSIEQPAASLGVLLHEN 125

Query: 120 MWYYVSKKSXXXXXXXXXXXXXXX--WIPISSIALIYLLTPLELRQALALIIPGHLLYFI 177
           + YY  KK+                   PI   A++Y +      +     +PGH++Y++
Sbjct: 126 LVYYELKKNGNQMNVRFFGAIDVSPSIFPIYMNAVMYFVYKRSWLEIAMNFMPGHVIYYM 185

Query: 178 DEAMSKTYGLNI 189
           D+ + K YG+++
Sbjct: 186 DDIIGKIYGIDL 197


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.330    0.146    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,332,880
Number of Sequences: 60738
Number of extensions: 313533
Number of successful extensions: 855
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 1
length of query: 189
length of database: 30,389,216
effective HSP length: 100
effective length of query: 89
effective length of database: 24,315,416
effective search space: 2164072024
effective search space used: 2164072024
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)