ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6040 good H KOG0777 Coenzyme transport and metabolism Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6040 2073218 2074162 315
(315 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL069c [H] KOG0777 Geranylgeranyl pyrophosphate synthase/Polypr... 219 3e-57
Hs4758430 [H] KOG0777 Geranylgeranyl pyrophosphate synthase/Poly... 205 8e-53
7295252 [H] KOG0777 Geranylgeranyl pyrophosphate synthase/Polypr... 189 3e-48
At3g20160 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Poly... 57 3e-08
At2g23800 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Poly... 52 1e-06
At1g17050 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Poly... 52 1e-06
ECU11g1810 [H] KOG0711 Polyprenyl synthetase 49 9e-06
At1g78510 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Poly... 49 9e-06
>YPL069c [H] KOG0777 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 335
Score = 219 bits (559), Expect = 3e-57
Identities = 129/318 (40%), Positives = 189/318 (58%), Gaps = 15/318 (4%)
Query: 8 LDQIIYNDTL---QTTKPVTEPFEYLLKQQGKRVRTLLIEEFGKLYEVPKPSIDAVSAFI 64
+D++I ND + Q +++P+ ++L + GK R LI + ++ +PK + VS +
Sbjct: 5 IDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIV 64
Query: 65 DELHTASLLIDDIEDNAELRRGHVAAHKKYGIWTTLNSAQCAVYVS---ISKLLAKEH-E 120
+ LH +SLLIDDIEDNA LRRG +H +G+ +T+N+A + + +S+L KE
Sbjct: 65 ELLHNSSLLIDDIEDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLY 124
Query: 121 PSLPSIINDELIRLHVGQGQDIYWRD--DGIVPSVNEYYEMAKNKTGGLFRLMVRLLHAL 178
+L +I N+ELI LH GQG DIYWRD I+P+ Y M NKTGGLFRL +RL+ AL
Sbjct: 125 HNLITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEAL 184
Query: 179 SKKELAQKYDLIPLANAAGILYQIRDDYLNLFSKTMFEQKGFADDLTEGKFSFPIIHAIA 238
S + L+P N GI+YQIRDDYLNL M +KGFA+D+TEGK SFPI+HA+
Sbjct: 185 SPSS-HHGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALN 243
Query: 239 SSRNEGDNDDY--VLKTVLSRPSEIRTKEKLLSYLEHQTKSGEYTRQVIQTLAQKVTTEL 296
++ +G + + +L+ +L R S+ K KL+ LE T S YT+ I L + +
Sbjct: 244 FTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDN 303
Query: 297 VPK---ELSSVKDILSKL 311
K +L+S D + L
Sbjct: 304 ENKYLPDLASHSDTATNL 321
>Hs4758430 [H] KOG0777 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 300
Score = 205 bits (521), Expect = 8e-53
Identities = 125/291 (42%), Positives = 165/291 (55%), Gaps = 14/291 (4%)
Query: 25 EPFEYLLKQQGKRVRTLLIEEFGKLYEVPKPSIDAVSAFIDELHTASLLIDDIEDNAELR 84
EP++YLL+ GK+VRT L + F +VP+ + + + LH ASLLIDDIEDN++LR
Sbjct: 14 EPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLR 73
Query: 85 RGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEHEPSLPSIINDELIRLHVGQGQDIYW 144
RG AH YGI + +NSA ++ + K+L +H P + +L+ LH GQG DIYW
Sbjct: 74 RGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDH-PDAVKLFTRQLLELHQGQGLDIYW 132
Query: 145 RDDGIVPSVNEYYEMAKNKTGGLFRLMVRLLHALSKKELAQKYDLIPLANAAGILYQIRD 204
RD+ P+ EY M KTGGLF L V L+ S K DL PL N G+ +QIRD
Sbjct: 133 RDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD----YKEDLKPLLNTLGLFFQIRD 188
Query: 205 DYLNLFSKTMFEQKGFADDLTEGKFSFPIIHAIASSRNEGDNDDYVLKTVLSRPSEIRTK 264
DY NL SK E K F +DLTEGKFSFP IHAI SR E +L+ R I K
Sbjct: 189 DYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI-WSRPESTQVQNILR---QRTENIDIK 244
Query: 265 EKLLSYLEHQTKSGEYTRQVIQTLAQKVTTELVPK----ELSSVKDILSKL 311
+ + YLE S EYTR ++ L K ++ + EL ++ LSK+
Sbjct: 245 KYCVHYLE-DVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKM 294
>7295252 [H] KOG0777 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 338
Score = 189 bits (481), Expect = 3e-48
Identities = 105/272 (38%), Positives = 158/272 (57%), Gaps = 10/272 (3%)
Query: 25 EPFEYLLKQQGKRVRTLLIEEFGKLYEVPKPSIDAVSAFIDELHTASLLIDDIEDNAELR 84
+PF Y+ + GK+ R+ L F +P + + + LH +SLLIDDIEDN+ LR
Sbjct: 26 QPFTYIQQIPGKQFRSELALAFNHWLLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILR 85
Query: 85 RGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEHEPSLPSIINDELIRLHVGQGQDIYW 144
RG AH YG+ +T+N+A A+++++ K+ +H P + ++L+ LH GQG +IYW
Sbjct: 86 RGVPVAHSIYGVASTINAANYALFLALEKVQQLDH-PEATKVYTEQLLELHRGQGMEIYW 144
Query: 145 RDDGIVPSVNEYYEMAKNKTGGLFRLMVRLLHALSKKELAQKYDLIPLANAAGILYQIRD 204
RD PS ++Y M KTGGLF L +RL+ S + K D L G+ +QIRD
Sbjct: 145 RDSFTCPSESDYKLMTVRKTGGLFMLAIRLMQLFS----SNKEDYSKLTAILGLYFQIRD 200
Query: 205 DYLNLFSKTMFEQKGFADDLTEGKFSFPIIHAIASSRNEGDNDDYVLKTVLSRPSEIRTK 264
DY NL K E K FA+DLTEGKF FP+IHA+ + + D VL + R +I K
Sbjct: 201 DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQK----QDKQVLHILRQRTHDIEVK 256
Query: 265 EKLLSYLEHQTKSGEYTRQVIQTLAQKVTTEL 296
+ ++ LE + S +YTR+V+++L + +E+
Sbjct: 257 KYCITLLE-KLGSFQYTRKVLESLDAEARSEV 287
>At3g20160 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 344
Score = 57.0 bits (136), Expect = 3e-08
Identities = 62/254 (24%), Positives = 110/254 (42%), Gaps = 34/254 (13%)
Query: 14 NDTLQTTKPVTEP-------FEYLLKQQGKRVRTLLIEEFGKLYEVPKPSIDAVSAFIDE 66
N L+ P+ EP Y L GKRVR +L +L + + + + I+
Sbjct: 62 NKALEEAVPLREPELKIREAMRYTLLSDGKRVRPMLCLAACELVGGQESTAMSAACAIEM 121
Query: 67 LHTASLLIDDIE--DNAELRRGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEHEPSLP 124
LH +SL++DD+ DN LRRG H +G + ++Q + +++ K + P
Sbjct: 122 LHASSLILDDLPCMDNDSLRRGKPTNHIVFGESIAILASQALIALAVQKTTSSTFADVPP 181
Query: 125 SII---NDELIR----LHVGQGQDI------YWRDDGIVPSVNEYYEMAK-NKTGGLFR- 169
I E+++ L GQ D+ + D G+ E+ E +KT L
Sbjct: 182 ERILKTVQEMVKAVEGLVAGQQADLAGEGMRFDSDTGL-----EHLEFIHIHKTAALLEA 236
Query: 170 --LMVRLLHALSKKELAQKYDLIPLANAAGILYQIRDDYLNLFSKTMFEQKGFADDLTEG 227
+M ++ S +E+ + L A G+++Q+ DD L++ + K DL G
Sbjct: 237 AAVMGAIMGGGSDEEIER---LRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLIAG 293
Query: 228 KFSFPIIHAIASSR 241
K ++P + + S+
Sbjct: 294 KLTYPRLMGVEKSK 307
>At2g23800 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 376
Score = 52.0 bits (123), Expect = 1e-06
Identities = 59/243 (24%), Positives = 94/243 (38%), Gaps = 15/243 (6%)
Query: 14 NDTLQTTKPVTEPFE------YLLKQQGKRVRTLLIEEFGKLYEVPKPSIDAVSAFIDEL 67
N L+ PV EP + Y + GKRVR +L +L + + + ++ +
Sbjct: 97 NKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMI 156
Query: 68 HTASLLIDDIE--DNAELRRGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEHEPSLPS 125
HT SL+ DD+ DN +LRRG HK YG + S + ++ + E
Sbjct: 157 HTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMTTAEISSERMV 216
Query: 126 IINDELIR------LHVGQGQDIYWRDDGIVPSVNEYYEMAK-NKTGGLFRLMVRLLHAL 178
EL R L GQ DI + E+ E +KT L L +
Sbjct: 217 WAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAII 276
Query: 179 SKKELAQKYDLIPLANAAGILYQIRDDYLNLFSKTMFEQKGFADDLTEGKFSFPIIHAIA 238
+ + A G+L+Q+ DD L+ + K D GK ++P + +
Sbjct: 277 GGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLE 336
Query: 239 SSR 241
S+
Sbjct: 337 KSK 339
>At1g17050 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 336
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 64 IDELHTASLLIDDIEDNAELRRGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEHEPSL 123
I+ +HTASL+ DD+ D +++RRG H+ +G + + ++ S LA +
Sbjct: 90 IEMIHTASLIHDDVLDESDMRRGRETVHELFGTRVAVLAGD-FMFAQASWYLANLENLEV 148
Query: 124 PSIINDELIRLHVGQGQDIYWRDDGIVPSVNEYYEMAKNKTGGLFRLMVRLLHALSKKEL 183
+I+ + G+ + D V +++Y + KT L + SK E
Sbjct: 149 IKLISQVIKDFASGEIKQASSLFDCDV-KLDDYMLKSYYKTASLVAASTKGAAIFSKVES 207
Query: 184 AQKYDLIPLANAAGILYQIRDDYLNLFSKTMFEQKGFADDLTEGKFSFPIIHAI 237
+ G+ +Q+ DD L+ T K A+DL +G + P+I A+
Sbjct: 208 KVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFAL 261
>ECU11g1810 [H] KOG0711 Polyprenyl synthetase
Length = 292
Score = 48.9 bits (115), Expect = 9e-06
Identities = 41/147 (27%), Positives = 75/147 (50%), Gaps = 12/147 (8%)
Query: 64 IDELHTASLLIDDIEDNAELRRGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEHEPSL 123
++ L L++DDI DN+++RRG + K G+ T ++ + +I KLL+++ +
Sbjct: 63 VELLQAVLLIVDDIMDNSKIRRGKPCYYLKRGMKTVKDA--FFLLGAIRKLLSEK----M 116
Query: 124 PSIINDELIRLHVGQGQDIYWRDDGIVPSVNEYYEMAKNKTGGLFRLMVRLLH--ALSKK 181
+D + + +GQ D R S+ Y +A++KTG + +L A +K
Sbjct: 117 KKPYSDSVFKTCLGQTHDTI-RKTRSEYSLETYVAIAESKTGAYTFYLPAVLGYVAANKA 175
Query: 182 ELAQKYDLIPLANAAGILYQIRDDYLN 208
E A +D N +++Q++DDYLN
Sbjct: 176 EPACLWD---FCNLGALIFQMQDDYLN 199
>At1g78510 [H] KOG0776 Geranylgeranyl pyrophosphate synthase/Polyprenyl
synthetase
Length = 392
Score = 48.9 bits (115), Expect = 9e-06
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 8/181 (4%)
Query: 60 VSAFIDELHTASLLIDDIEDNAELRRGHVAAHKKYGIWTTLNSAQCAVYVSISKLLAKEH 119
++ I+ +HTASL+ DD+ D +++RRG H+ +G + + ++ S LA
Sbjct: 142 LAEIIEMIHTASLIHDDVLDESDMRRGKETVHELFGTRVAVLAGD-FMFAQASWYLANLE 200
Query: 120 EPSLPSIIND---ELIRLHVGQGQDIYWRDDGIVPSVNEYYEMAKNKTGGLFRLMVRLLH 176
+ +I+ + + Q ++ D ++EY + KT L +
Sbjct: 201 NLEVIKLISQVIKDFASGEIKQASSLFDCD----TKLDEYLLKSFYKTASLVAASTKGAA 256
Query: 177 ALSKKELAQKYDLIPLANAAGILYQIRDDYLNLFSKTMFEQKGFADDLTEGKFSFPIIHA 236
S+ E + G+ +QI DD L+ T K DL +G + P+I A
Sbjct: 257 IFSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFA 316
Query: 237 I 237
+
Sbjct: 317 L 317
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,544,334
Number of Sequences: 60738
Number of extensions: 800850
Number of successful extensions: 2093
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2077
Number of HSP's gapped (non-prelim): 8
length of query: 315
length of database: 30,389,216
effective HSP length: 106
effective length of query: 209
effective length of database: 23,950,988
effective search space: 5005756492
effective search space used: 5005756492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)