ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6115 good C KOG3976 Energy production and conversion Mitochondrial F1F0-ATP synthase, subunit b/ATP4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6115 2097204 2097914 237
(237 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL078c [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4 273 1e-73
SPBC1604.07 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit ... 172 5e-43
7294882 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4 57 2e-08
HsM4502299 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b... 54 2e-07
Hs21361565 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b... 54 2e-07
>YPL078c [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4
Length = 244
Score = 273 bits (699), Expect = 1e-73
Identities = 140/237 (59%), Positives = 191/237 (80%), Gaps = 2/237 (0%)
Query: 3 RALTLKASARPVVAGLCSRQAPIAAVRYMS-TPSPQ-DPKAKASSILDALPGNTALSKTG 60
R L L++ ++ + + + + RYMS TP Q DPKAKA+SI++A+PGN L+KTG
Sbjct: 8 RGLALRSVSKTLFSQGVRCPSMVIGARYMSSTPEKQTDPKAKANSIINAIPGNNILTKTG 67
Query: 61 ILXXXXXXXXXXISNQLYVLNEETILVATFTGVVLAGIKFLAPAYNEFAENRVKQVSSIL 120
+L ISN+LYV+N+E+IL+ TF G K+LAPAY +FA+ R+K+VS +L
Sbjct: 68 VLGTSAAAVIYAISNELYVINDESILLLTFLGFTGLVAKYLAPAYKDFADARMKKVSDVL 127
Query: 121 NSSRTKHVDAVKERIESVSELKNVSDTTKVLFDVSKETVKLEAEAFELKQQVDLAAEAKS 180
N+SR KHV+AVK+RI+SVS+L+NV++TTKVLFDVSKETV+LE+EAFELKQ+V+LA EAK+
Sbjct: 128 NASRNKHVEAVKDRIDSVSQLQNVAETTKVLFDVSKETVELESEAFELKQKVELAHEAKA 187
Query: 181 VLDSWVRYEASVRQLQQQQIADSVVAKVQSELGNPKFQEKVLQQSVADVEKLLANLK 237
VLDSWVRYEAS+RQL+Q+Q+A SV+++VQSELGNPKFQEKVLQQS++++E+LL+ LK
Sbjct: 188 VLDSWVRYEASLRQLEQRQLAKSVISRVQSELGNPKFQEKVLQQSISEIEQLLSKLK 244
>SPBC1604.07 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4
Length = 244
Score = 172 bits (435), Expect = 5e-43
Identities = 85/217 (39%), Positives = 142/217 (65%), Gaps = 1/217 (0%)
Query: 20 SRQAPIAAVRYMSTPSPQ-DPKAKASSILDALPGNTALSKTGILXXXXXXXXXXISNQLY 78
+R+ + + TPS + P KA++I+ ++P + L+K+G+L IS +Y
Sbjct: 27 TRKFSLTPTTFDKTPSGRIPPDQKAANIISSVPSTSLLTKSGVLTVTAAALATAISKGIY 86
Query: 79 VLNEETILVATFTGVVLAGIKFLAPAYNEFAENRVKQVSSILNSSRTKHVDAVKERIESV 138
V+N+E+I+VA+F G+V AYNE+++ + ++ I+ ++R H A++ERI+ V
Sbjct: 87 VVNDESIVVASFLGLVGVFGTLGRKAYNEWSDKTIAKIGGIMQAARNDHTSAIRERIDQV 146
Query: 139 SELKNVSDTTKVLFDVSKETVKLEAEAFELKQQVDLAAEAKSVLDSWVRYEASVRQLQQQ 198
+ L+ V T+ LF SKET ++EAE FEL+Q+V LA EAKSVLDSWV +EA+VR QQ+
Sbjct: 147 ASLQEVESVTQALFHTSKETARMEAEIFELEQRVALAKEAKSVLDSWVHHEANVRAEQQE 206
Query: 199 QIADSVVAKVQSELGNPKFQEKVLQQSVADVEKLLAN 235
++ + V+A+V S++ KFQ+ L +S+ ++EK+LA+
Sbjct: 207 RLVEDVLARVNSKVSTQKFQQDALNESLGEIEKVLAS 243
>7294882 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4
Length = 243
Score = 57.0 bits (136), Expect = 2e-08
Identities = 51/243 (20%), Positives = 104/243 (41%), Gaps = 8/243 (3%)
Query: 1 MFRALTLKASARPVVAGLCSRQAPIAAVRYMSTPSPQDPKAKASSILDALPGNTA---LS 57
MF L + RP+ +R A AA + Q P+ L LP +
Sbjct: 1 MFSRAALLTAQRPLTVA-ATRSAAAAAAPGGAIERRQRPEHPGKVRLGFLPEEWFQFFYN 59
Query: 58 KTGIL---XXXXXXXXXXISNQLYVLNEETILVATFTGVVLAGIKFLAPAYNEFAENRVK 114
KTG+ S ++YV+ E + + + +K L P ++A+ +
Sbjct: 60 KTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAIIAVKKLGPVIAKWADGEID 119
Query: 115 QVSSILNSSRTKHVDAVKERIESVSELKNVSDTTKVLFDVSKETVKLEAEAFELKQQVDL 174
++ S R + + + IE+ + + +D +L + KE + L+ EA ++ +++
Sbjct: 120 KIESEWKEGREAELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNV 179
Query: 175 AAEAKSVLDSWVRYEASVRQLQQQQIADSVVAKVQSELGNPKFQEKVLQQSVADVEKLLA 234
+E K LD V R+L Q+ + + + V + + +P+ +++ L + +AD+ L
Sbjct: 180 YSEVKRRLDYQVECRHVERRLSQKHMVNWITTNVLASI-SPQQEKETLNKCIADLSALAL 238
Query: 235 NLK 237
+K
Sbjct: 239 RVK 241
>HsM4502299 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4
Length = 256
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/162 (21%), Positives = 80/162 (48%), Gaps = 2/162 (1%)
Query: 73 ISNQLYVLNEETILVATFTGVVLAGIKFLAPAYNEFAENRVKQVSSILNSSRTKHVDAVK 132
+S ++YV++ ET + GV++ GIK P +FA+ +Q + L ++ + ++
Sbjct: 88 LSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADFADKLNEQKLAQLEEAKQASIQHIQ 147
Query: 133 ERIESVSELKNVSDTTKVLFDVSKETVKLEAEAFELKQQVDLAAEAKSVLDSWVRYEASV 192
I++ + + LFDV + + + E ++ + E K+ LD + + +
Sbjct: 148 NAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQNMM 207
Query: 193 RQLQQQQIADSVVAKVQSELGNPKFQEKVLQQSVADVEKLLA 234
R+ +Q+ + + V V + + +++ + + +AD+ KLLA
Sbjct: 208 RRKEQEHMINWVEKHVVQSISTQQ-EKETIAKCIADL-KLLA 247
>Hs21361565 [C] KOG3976 Mitochondrial F1F0-ATP synthase subunit b/ATP4
Length = 256
Score = 53.5 bits (127), Expect = 2e-07
Identities = 35/162 (21%), Positives = 80/162 (48%), Gaps = 2/162 (1%)
Query: 73 ISNQLYVLNEETILVATFTGVVLAGIKFLAPAYNEFAENRVKQVSSILNSSRTKHVDAVK 132
+S ++YV++ ET + GV++ GIK P +FA+ +Q + L ++ + ++
Sbjct: 88 LSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADFADKLNEQKLAQLEEAKQASIQHIQ 147
Query: 133 ERIESVSELKNVSDTTKVLFDVSKETVKLEAEAFELKQQVDLAAEAKSVLDSWVRYEASV 192
I++ + + LFDV + + + E ++ + E K+ LD + + +
Sbjct: 148 NAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQNMM 207
Query: 193 RQLQQQQIADSVVAKVQSELGNPKFQEKVLQQSVADVEKLLA 234
R+ +Q+ + + V V + + +++ + + +AD+ KLLA
Sbjct: 208 RRKEQEHMINWVEKHVVQSISTQQ-EKETIAKCIADL-KLLA 247
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.126 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,373,623
Number of Sequences: 60738
Number of extensions: 340328
Number of successful extensions: 1504
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 30,389,216
effective HSP length: 103
effective length of query: 134
effective length of database: 24,133,202
effective search space: 3233849068
effective search space used: 3233849068
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)