ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6127 good J KOG3301 Translation, ribosomal structure and biogenesis Ribosomal protein S4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6127 Some similarity with YPL081w SP|O13516 RPS13B
ribosomal protein S9.e.A {P2.65.f2.1} [INTRON]
(165 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR189w [J] KOG3301 Ribosomal protein S4 265 3e-71
YPL081w [J] KOG3301 Ribosomal protein S4 263 6e-71
SPBC29A3.12 [J] KOG3301 Ribosomal protein S4 228 2e-60
SPAC24H6.07 [J] KOG3301 Ribosomal protein S4 228 3e-60
Hs14141193 [J] KOG3301 Ribosomal protein S4 222 2e-58
7294919 [J] KOG3301 Ribosomal protein S4 218 3e-57
CE05849 [J] KOG3301 Ribosomal protein S4 211 5e-55
At5g15200 [J] KOG3301 Ribosomal protein S4 210 8e-55
At5g39850 [J] KOG3301 Ribosomal protein S4 204 4e-53
Hs18601632 [J] KOG3301 Ribosomal protein S4 131 5e-31
Hs18593320 [J] KOG3301 Ribosomal protein S4 130 1e-30
ECU05g0920 [J] KOG3301 Ribosomal protein S4 99 2e-21
SPAC19D5.05c [A] KOG4655 U3 small nucleolar ribonucleoprotein (s... 60 2e-09
YHR148w [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP... 58 7e-09
Hs8922794 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoR... 55 3e-08
ECU05g1320 [A] KOG4655 U3 small nucleolar ribonucleoprotein (sno... 55 3e-08
At4g12160 [J] KOG3301 Ribosomal protein S4 53 2e-07
At5g15750 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoR... 49 2e-06
CE08804 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP... 49 4e-06
AtCh025 [J] KOG3301 Ribosomal protein S4 40 0.002
YMR293c [J] KOG1211 Amidases 29 3.3
At3g18525 [L] KOG0219 Mismatch repair ATPase MSH2 (MutS family) 28 4.3
7302974 [H] KOG3159 Lipoate-protein ligase A 28 4.3
7299627 [K] KOG3793 Transcription factor NFAT subunit NF45 28 4.3
7292130 [A] KOG1869 Splicing coactivator SRm160/300 subunit SRm300 28 4.3
CE27176 [Z] KOG0241 Kinesin-like protein 28 7.4
CE28605 [Z] KOG0517 Beta-spectrin 27 9.7
CE28604 [Z] KOG0517 Beta-spectrin 27 9.7
CE19013 [M] KOG1854 Mitochondrial inner membrane protein (mitofi... 27 9.7
>YBR189w [J] KOG3301 Ribosomal protein S4
Length = 195
Score = 265 bits (676), Expect = 3e-71
Identities = 135/141 (95%), Positives = 140/141 (98%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+DAELKLAGE+GLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR+
Sbjct: 24 LDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRV 83
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLI+QRHIAVGKQIVNI
Sbjct: 84 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNI 143
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSFMVRL+SEKHIDFA TSPF
Sbjct: 144 PSFMVRLDSEKHIDFAPTSPF 164
>YPL081w [J] KOG3301 Ribosomal protein S4
Length = 197
Score = 263 bits (673), Expect = 6e-71
Identities = 134/141 (95%), Positives = 140/141 (99%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+DAELKLAGE+GLKNK+EIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVR+
Sbjct: 24 LDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRV 83
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLI+QRHIAVGKQIVNI
Sbjct: 84 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNI 143
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSFMVRL+SEKHIDFA TSPF
Sbjct: 144 PSFMVRLDSEKHIDFAPTSPF 164
>SPBC29A3.12 [J] KOG3301 Ribosomal protein S4
Length = 192
Score = 228 bits (582), Expect = 2e-60
Identities = 110/141 (78%), Positives = 131/141 (92%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+DAELKLAGEYGL+NK EI+R++ LSKIRRAAR+LLT DEKDPKRLFEGNA+IRRLVR+
Sbjct: 24 LDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRL 83
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
G+L E + KLDYVLAL++EDFLERRLQTQV+KLGLAKS+HHARVLI QRHI VGKQIVN+
Sbjct: 84 GILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNV 143
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSF+VRL+++KHIDFA +SP+
Sbjct: 144 PSFVVRLDAQKHIDFALSSPY 164
>SPAC24H6.07 [J] KOG3301 Ribosomal protein S4
Length = 191
Score = 228 bits (581), Expect = 3e-60
Identities = 110/141 (78%), Positives = 131/141 (92%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+DAELKLAGEYGL+NK EI+R++ LSKIRRAAR+LLT DEKDPKRLFEGNA+IRRLVR+
Sbjct: 24 LDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRL 83
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
G+L E + KLDYVLAL++EDFLERRLQTQV+KLGLAKS+HHARVLI QRHI VGKQIVN+
Sbjct: 84 GILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNV 143
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSF+VRL+++KHIDFA +SP+
Sbjct: 144 PSFVVRLDTQKHIDFALSSPY 164
>Hs14141193 [J] KOG3301 Ribosomal protein S4
Length = 194
Score = 222 bits (566), Expect = 2e-58
Identities = 107/141 (75%), Positives = 127/141 (89%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+D ELKL GEYGL+NKRE++R+ F L+KIR+AAR+LLT DEKDP+RLFEGNAL+RRLVRI
Sbjct: 25 LDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRI 84
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
GVL E K KLDY+L LK+EDFLERRLQTQV+KLGLAKS+HHARVLI QRHI V KQ+VNI
Sbjct: 85 GVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNI 144
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSF+VRL+S+KHIDF+ SP+
Sbjct: 145 PSFIVRLDSQKHIDFSLRSPY 165
>7294919 [J] KOG3301 Ribosomal protein S4
Length = 195
Score = 218 bits (555), Expect = 3e-57
Identities = 105/141 (74%), Positives = 126/141 (88%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+D ELK+ GEYGL+NKRE++R+ + L+KIR+AAR+LLT DEKD KRLF+GNAL+RRLVRI
Sbjct: 26 LDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRI 85
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
GVL E + KLDYVL LK+EDFLERRLQTQV+KLGLAKS+HHARVLI QRHI V KQ+VNI
Sbjct: 86 GVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNI 145
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSF+VRL+S+KHIDF+ SPF
Sbjct: 146 PSFVVRLDSQKHIDFSLKSPF 166
>CE05849 [J] KOG3301 Ribosomal protein S4
Length = 189
Score = 211 bits (536), Expect = 5e-55
Identities = 99/141 (70%), Positives = 125/141 (88%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+D ELKL G +GLKNKRE++R+ + L+K+R+AAR+LLT ++KDPKRLFEGNAL+RRLV+I
Sbjct: 24 LDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKI 83
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
GVL E K KLDYVL LKVEDFLERRLQTQV+KLGLAKS+HHAR+LI Q HI V +Q+V++
Sbjct: 84 GVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDV 143
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSF+VRL+S+KHIDF+ SP+
Sbjct: 144 PSFIVRLDSQKHIDFSLQSPY 164
>At5g15200 [J] KOG3301 Ribosomal protein S4
Length = 198
Score = 210 bits (534), Expect = 8e-55
Identities = 101/141 (71%), Positives = 123/141 (86%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+D+ELKL GEYGL+NKRE++R+ + LS+IR AARDLLT DEK P+R+FEG AL+RR+ R
Sbjct: 26 LDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRY 85
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
G+L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HH+RVLI QRHI VGKQ+VNI
Sbjct: 86 GLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNI 145
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSFMVRL+S+KHIDFA TSPF
Sbjct: 146 PSFMVRLDSQKHIDFALTSPF 166
>At5g39850 [J] KOG3301 Ribosomal protein S4
Length = 197
Score = 204 bits (519), Expect = 4e-53
Identities = 98/141 (69%), Positives = 123/141 (86%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+DAELKL GEYGL+ KRE++R+ + LS+IR AAR+LLT DEK+P+R+FEG AL+RR+ R
Sbjct: 26 LDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRY 85
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
G+L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNI
Sbjct: 86 GLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNI 145
Query: 121 PSFMVRLESEKHIDFARTSPF 141
PSFMVR+ES+KH+DF+ TSPF
Sbjct: 146 PSFMVRVESQKHVDFSLTSPF 166
>Hs18601632 [J] KOG3301 Ribosomal protein S4
Length = 131
Score = 131 bits (329), Expect = 5e-31
Identities = 63/92 (68%), Positives = 76/92 (82%)
Query: 50 GNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQR 109
GN L+RRL+RIGVL E K KLDY+L LK+EDFLERRLQTQV+KLGLAKS+HHA VLI QR
Sbjct: 33 GNVLLRRLLRIGVLDEGKTKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAGVLIRQR 92
Query: 110 HIAVGKQIVNIPSFMVRLESEKHIDFARTSPF 141
+ V Q+ NIPSF+VRL+S+K ID + SP+
Sbjct: 93 RVRVRNQVANIPSFIVRLDSQKRIDLSLRSPY 124
>Hs18593320 [J] KOG3301 Ribosomal protein S4
Length = 168
Score = 130 bits (326), Expect = 1e-30
Identities = 73/140 (52%), Positives = 91/140 (64%), Gaps = 26/140 (18%)
Query: 1 MDAELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRI 60
+D +LKL GEYGL+NK E++R+ F L KI +AAR+LLT DEKDP+RLFEG AL++ L
Sbjct: 25 LDQKLKLIGEYGLQNKCEVWRVKFTLVKIHKAARELLTLDEKDPRRLFEGIALLQWL--- 81
Query: 61 GVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNI 120
R LQTQV+KLGLAKS+ HA VLI Q HI V +Q+VNI
Sbjct: 82 -----------------------RFLQTQVFKLGLAKSIRHAHVLIQQCHIRVREQVVNI 118
Query: 121 PSFMVRLESEKHIDFARTSP 140
F VRL+S+KHIDF+ P
Sbjct: 119 LFFTVRLDSQKHIDFSLCFP 138
>ECU05g0920 [J] KOG3301 Ribosomal protein S4
Length = 184
Score = 99.4 bits (246), Expect = 2e-21
Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 9/140 (6%)
Query: 4 ELKLAGEYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVL 63
E +L G YGLKNK E++ + +K + AR LLT + + G +L+RRL++ G+L
Sbjct: 25 EAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDIPI-NGRSLLRRLMKYGIL 83
Query: 64 SE----DKKK----LDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGK 115
DK++ L+ VL L + +LERRLQ +V+ GLAKSVHHAR+LI R I++
Sbjct: 84 GGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKD 143
Query: 116 QIVNIPSFMVRLESEKHIDF 135
QIV++P FMVR + E I++
Sbjct: 144 QIVDVPGFMVRADKEPLIEY 163
>SPAC19D5.05c [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 183
Score = 59.7 bits (143), Expect = 2e-09
Identities = 37/129 (28%), Positives = 58/129 (44%)
Query: 11 YGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKL 70
Y + + E + + K R+ A L D DP RL N L+ +L +G+L K
Sbjct: 36 YHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMS 95
Query: 71 DYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESE 130
D V RRL + KL +++ V A LI Q H+ VG ++ P+++V E
Sbjct: 96 DIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLE 155
Query: 131 KHIDFARTS 139
+ + TS
Sbjct: 156 DFVTWTDTS 164
>YHR148w [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 183
Score = 57.8 bits (138), Expect = 7e-09
Identities = 34/129 (26%), Positives = 62/129 (47%)
Query: 11 YGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKL 70
Y ++N+ + ++ + IRR A L DP R L+ +L +GVL+ K
Sbjct: 36 YHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKIS 95
Query: 71 DYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESE 130
D + V RRL +++L +A+++ A I Q H+ VG ++N P+++V E
Sbjct: 96 DLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNME 155
Query: 131 KHIDFARTS 139
++ + S
Sbjct: 156 DYVTWVDNS 164
>Hs8922794 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 184
Score = 55.5 bits (132), Expect = 3e-08
Identities = 41/137 (29%), Positives = 69/137 (49%), Gaps = 3/137 (2%)
Query: 4 ELKLAGEYGLKNKREIYRISFQLSK-IRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGV 62
EL++ Y L+ +RE Y QLS+ +R AR L E+D R+ AL+ +L +G+
Sbjct: 30 ELRVLRRYRLQ-RREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGL 88
Query: 63 LSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPS 122
+ + L+ + F RRL T + KL +A+ + A + Q H+ VG +V P+
Sbjct: 89 VPT-RGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPA 147
Query: 123 FMVRLESEKHIDFARTS 139
F+V E + + +S
Sbjct: 148 FLVTRSMEDFVTWVDSS 164
>ECU05g1320 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 180
Score = 55.5 bits (132), Expect = 3e-08
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 10 EYGLKNKREIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKK 69
+YGL+++ E + S + K+R+ A L E DP R L+ RL +GV+ +K
Sbjct: 34 KYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVIK--NRK 91
Query: 70 LDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLES 129
L + V F ERRL + ++ + S A + H+ +G ++V PS ++
Sbjct: 92 LVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTIISKAM 151
Query: 130 EKHIDFARTS 139
E + + S
Sbjct: 152 EDFVSWVDKS 161
>At4g12160 [J] KOG3301 Ribosomal protein S4
Length = 106
Score = 52.8 bits (125), Expect = 2e-07
Identities = 28/47 (59%), Positives = 35/47 (73%)
Query: 66 DKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIA 112
+K KLDYVLAL VE+FLERRLQT V+K G+AKS+ V S+ I+
Sbjct: 19 EKNKLDYVLALTVENFLERRLQTIVFKSGMAKSISITLVSSSRTGIS 65
>At5g15750 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 194
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 17 REIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVLAL 76
+ ++ + F +++ + D DP R+ + L+ +L +GV+ +K L L
Sbjct: 53 KALFYLFFFFWMVQKLTNIMKQMDPADPFRIQMTDMLLEKLYNMGVIPT-RKSLTLTERL 111
Query: 77 KVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESEKHIDFA 136
V F RRL T + L A+ A I Q H+ VG + + P+F+V E I +
Sbjct: 112 SVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWV 171
Query: 137 RTS 139
+S
Sbjct: 172 DSS 174
>CE08804 [A] KOG4655 U3 small nucleolar ribonucleoprotein (snoRNP) component
Length = 183
Score = 48.5 bits (114), Expect = 4e-06
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 16 KREIYRISFQLSKIRRAARDLLTR-DEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVL 74
KRE Y + L+ R DL+ E DP R ++ + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 75 ALKVEDFLERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESEKHID 134
+ F RRL + +G+ +SV A L+ Q H+ +G ++V P+FMV SE I
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158
Query: 135 FARTS 139
+ + S
Sbjct: 159 WTKAS 163
>AtCh025 [J] KOG3301 Ribosomal protein S4
Length = 201
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/84 (30%), Positives = 42/84 (49%), Gaps = 4/84 (4%)
Query: 40 DEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 99
+EK R G + L + + + K VL LE RL +++LG+A ++
Sbjct: 49 EEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTGQVLL----QLLEMRLDNILFRLGMALTI 104
Query: 100 HHARVLISQRHIAVGKQIVNIPSF 123
AR L++ HI V +IV+IPS+
Sbjct: 105 PQARQLVNHGHILVNGRIVDIPSY 128
>YMR293c [J] KOG1211 Amidases
Length = 464
Score = 28.9 bits (63), Expect = 3.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 22 ISFQLSKIRRAARDLLTRDEKDP-------KRLFEGNALIRRLVRIGVLSE 65
+S +++ +R+ L D KDP + L EGN +RR +++G++ E
Sbjct: 192 LSKKINVLRKVFHTLDKYDMKDPTSLSVELRELIEGNKKVRRPLKVGIVKE 242
>At3g18525 [L] KOG0219 Mismatch repair ATPase MSH2 (MutS family)
Length = 422
Score = 28.5 bits (62), Expect = 4.3
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 22 ISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDF 81
+S + ARDLL L+EG+ RLV+ G D + F
Sbjct: 81 VSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNIGSFEDVL-------F 133
Query: 82 LERRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFM 124
+Q + + S H R +I ++ + ++++ + F+
Sbjct: 134 ANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFL 176
>7302974 [H] KOG3159 Lipoate-protein ligase A
Length = 394
Score = 28.5 bits (62), Expect = 4.3
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 46 RLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVL 105
R + N + R L R + + + D ++ + +++ KLG S HH +L
Sbjct: 151 RKYNLNIVTRALFREWAIKAEINERDDIVVMN------KKISGTAAKLGHPNSYHHCTIL 204
Query: 106 ISQRHIAVGKQIVNIPS 122
S + +G+ +V P+
Sbjct: 205 ASANKLHLGESLVREPA 221
>7299627 [K] KOG3793 Transcription factor NFAT subunit NF45
Length = 396
Score = 28.5 bits (62), Expect = 4.3
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Query: 74 LALKVEDFLERRLQTQVYKLGLAKSV--HHARVLISQRHIAVGKQIVNIPSFMVRLESEK 131
LA KVE L+ ++T+V G +V H I+ H V I +P + +LE E
Sbjct: 139 LAKKVEADLKASMKTEVLTKGDQHTVQIHERGFDIANVHAKVRILIATLPQNLRKLEPEI 198
Query: 132 HID 134
H+D
Sbjct: 199 HLD 201
>7292130 [A] KOG1869 Splicing coactivator SRm160/300 subunit SRm300
Length = 1430
Score = 28.5 bits (62), Expect = 4.3
Identities = 19/60 (31%), Positives = 32/60 (52%), Gaps = 3/60 (5%)
Query: 29 IRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRLQT 88
+R +D R E D K+L +A + R +L D+K+ V L++ED LE++ +T
Sbjct: 26 VRPGKKDKDYRAEDDTKKL---DAQLNRPPNKEILDHDRKRKIEVKCLELEDILEKQGRT 82
>CE27176 [Z] KOG0241 Kinesin-like protein
Length = 1595
Score = 27.7 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 45 KRLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRL 86
KRL EG + + LV I + ++ +KK+D+ + V F+ ++L
Sbjct: 264 KRLEEGGNINKNLVSIFLRNDLEKKIDFKFSADVYVFINQKL 305
>CE28605 [Z] KOG0517 Beta-spectrin
Length = 2182
Score = 27.3 bits (59), Expect = 9.7
Identities = 29/113 (25%), Positives = 56/113 (48%), Gaps = 16/113 (14%)
Query: 28 KIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRLQ 87
K RA D +T+D+ DP+ +F +R+ R+ L E ++L + + + L + L
Sbjct: 1109 KKMRAMGDRVTQDQTDPQYMF-----LRQ--RLAGLQEGWEELQRMWDNR-QHLLSQGLN 1160
Query: 88 TQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESE--KHIDFART 138
Q++ + A V++SQ+ + K +IP + + E++ +H DF T
Sbjct: 1161 LQMF----LRDAKQAEVMLSQQENYLAKD--DIPQSLEQAENQLKRHQDFITT 1207
>CE28604 [Z] KOG0517 Beta-spectrin
Length = 2257
Score = 27.3 bits (59), Expect = 9.7
Identities = 29/113 (25%), Positives = 56/113 (48%), Gaps = 16/113 (14%)
Query: 28 KIRRAARDLLTRDEKDPKRLFEGNALIRRLVRIGVLSEDKKKLDYVLALKVEDFLERRLQ 87
K RA D +T+D+ DP+ +F +R+ R+ L E ++L + + + L + L
Sbjct: 1109 KKMRAMGDRVTQDQTDPQYMF-----LRQ--RLAGLQEGWEELQRMWDNR-QHLLSQGLN 1160
Query: 88 TQVYKLGLAKSVHHARVLISQRHIAVGKQIVNIPSFMVRLESE--KHIDFART 138
Q++ + A V++SQ+ + K +IP + + E++ +H DF T
Sbjct: 1161 LQMF----LRDAKQAEVMLSQQENYLAKD--DIPQSLEQAENQLKRHQDFITT 1207
>CE19013 [M] KOG1854 Mitochondrial inner membrane protein (mitofilin)
Length = 663
Score = 27.3 bits (59), Expect = 9.7
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 61 GVLSEDKKKLDYVLALKVEDFLER-RLQT---------QVYKLGLAKSVHHARVLISQRH 110
G++ ++K++ ++A K ED LE+ RL+T + K L + A I +++
Sbjct: 344 GIVLNEEKRIQSIIAKKKEDLLEKLRLETNAKQAAVIPEFDKKKLDAELARATAEIQKKY 403
Query: 111 IAVGKQIVNIPSFMVRLESEKHIDFA 136
K++V + +E K +D A
Sbjct: 404 DEKLKEVVRTQKQLYDIEHAKDVDEA 429
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.140 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,290,751
Number of Sequences: 60738
Number of extensions: 261539
Number of successful extensions: 629
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 29
length of query: 165
length of database: 30,389,216
effective HSP length: 98
effective length of query: 67
effective length of database: 24,436,892
effective search space: 1637271764
effective search space used: 1637271764
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)