ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6153 check: MH K KOG0392 Transcription SNF2 family DNA-dependent ATPase domain-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6153 2108059 2113677 1873
(1873 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 2296 0.0
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 1029 0.0
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 769 0.0
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 724 0.0
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 699 0.0
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 380 e-104
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 316 2e-85
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 272 3e-72
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 261 6e-69
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 252 3e-66
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 251 1e-65
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 249 4e-65
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 243 2e-63
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 243 3e-63
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 243 3e-63
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 243 3e-63
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 241 1e-62
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 240 1e-62
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 240 2e-62
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 239 4e-62
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 239 4e-62
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 236 3e-61
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 235 6e-61
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 234 8e-61
At2g25170 [R] KOG0383 Predicted helicase 233 2e-60
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 232 4e-60
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 232 5e-60
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 230 1e-59
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 229 2e-59
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 228 7e-59
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 228 7e-59
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 228 9e-59
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 227 2e-58
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 226 3e-58
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 225 6e-58
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 224 8e-58
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 224 1e-57
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 223 2e-57
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 220 2e-56
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 218 1e-55
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 216 2e-55
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 215 6e-55
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 215 6e-55
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 213 3e-54
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 213 3e-54
At5g44800 [R] KOG0383 Predicted helicase 211 7e-54
7293795 [R] KOG0383 Predicted helicase 209 4e-53
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 208 6e-53
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 207 1e-52
Hs4557453 [R] KOG0383 Predicted helicase 206 4e-52
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 204 8e-52
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 204 8e-52
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 204 1e-51
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 204 1e-51
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 203 2e-51
Hs20533808 [R] KOG0383 Predicted helicase 202 5e-51
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 201 9e-51
Hs4557451 [R] KOG0383 Predicted helicase 201 1e-50
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 200 2e-50
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 200 2e-50
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 200 2e-50
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 198 6e-50
CE03657 [R] KOG0383 Predicted helicase 198 8e-50
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 196 4e-49
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 194 1e-48
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 192 4e-48
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 191 1e-47
CE17716 [R] KOG0383 Predicted helicase 191 1e-47
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 188 6e-47
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 185 5e-46
CE25143 [L] KOG0390 DNA repair protein SNF2 family 184 9e-46
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 183 2e-45
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 179 5e-44
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 178 8e-44
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 174 9e-43
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 174 2e-42
SPBP35G2.10 [R] KOG0383 Predicted helicase 173 2e-42
YGL163c [L] KOG0390 DNA repair protein SNF2 family 173 3e-42
7295868 [L] KOG0390 DNA repair protein SNF2 family 171 1e-41
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 171 1e-41
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 169 5e-41
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 166 3e-40
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 166 3e-40
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 165 7e-40
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 164 2e-39
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 164 2e-39
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 163 3e-39
YBR073w [L] KOG0390 DNA repair protein SNF2 family 162 4e-39
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 156 3e-37
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 155 6e-37
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 150 1e-35
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 147 1e-34
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 141 1e-32
CE23323 [L] KOG0390 DNA repair protein SNF2 family 138 1e-31
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 137 2e-31
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 131 9e-30
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 129 6e-29
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 129 6e-29
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 127 1e-28
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 126 4e-28
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 119 6e-26
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 117 1e-25
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 116 4e-25
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 114 1e-24
At4g31900 [R] KOG0383 Predicted helicase 113 3e-24
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 108 1e-22
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 107 2e-22
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 106 3e-22
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 102 6e-21
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 102 8e-21
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 101 1e-20
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 100 2e-20
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 99 5e-20
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 93 4e-18
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 92 8e-18
7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 91 2e-17
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 90 3e-17
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 90 3e-17
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 90 3e-17
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 90 4e-17
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 88 1e-16
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 87 3e-16
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 87 3e-16
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 86 6e-16
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 82 6e-15
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 82 8e-15
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 82 8e-15
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 82 8e-15
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 82 1e-14
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 78 1e-13
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 78 1e-13
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 78 2e-13
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 75 1e-12
At5g20420 [L] KOG0390 DNA repair protein SNF2 family 75 1e-12
At3g42670 [L] KOG0390 DNA repair protein SNF2 family 75 1e-12
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 74 3e-12
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 72 6e-12
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 72 6e-12
Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 72 8e-12
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 72 1e-11
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 69 9e-11
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 68 2e-10
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 67 3e-10
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 65 1e-09
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 64 3e-09
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 64 3e-09
Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase 63 4e-09
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 62 9e-09
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 58 1e-07
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 54 3e-06
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 2296 bits (5950), Expect = 0.0
Identities = 1185/1896 (62%), Positives = 1443/1896 (75%), Gaps = 52/1896 (2%)
Query: 1 MSSQESRLDRQVILLETGSTQVVRNMAADQLGDLAKQHPEQTLPLLSRVYPYLLSKQWET 60
M+S+ SRLDRQVIL+ETGSTQVVRNMAADQ+GDLAKQHPE L LLSRVYP+LL K+WET
Sbjct: 1 MTSRVSRLDRQVILIETGSTQVVRNMAADQMGDLAKQHPEDILSLLSRVYPFLLVKKWET 60
Query: 61 RVTAARAVGGIVSHAPLWDPNADDEESKNPQTQQPLGPESAKVKIEEEMKVKLEELSHTD 120
RVTAARAVGGIV+HAP WDPN D + PL ++A+VK+E EMK+KLEE + +
Sbjct: 61 RVTAARAVGGIVAHAPSWDPNESDLVGGTNEGS-PL--DNAQVKLEHEMKIKLEEATQNN 117
Query: 121 EWNELQDDTHYFTLNSWXXXXXXXXXXXXXXXXXNDYESKALNINNNGSADIEQDDANNV 180
+ N LQ+D H +L+ W NDY N G AD +N+
Sbjct: 118 QLNLLQEDHHLSSLSDWKLNEILKSGKVLLASSMNDY-------NVLGKAD------DNI 164
Query: 181 KHLKKEDSFADLKKENSTDSLADEDTVNETKESKRSARMLAMARRKKKIQAKTVNKKPVD 240
+ K D D+K+E S + +D+ N++ +K+SARMLAMARRKKK+ AK K PVD
Sbjct: 165 RKQAKTD---DIKQETSMLNASDKANENKSNANKKSARMLAMARRKKKMSAKNTPKHPVD 221
Query: 241 LSQSSATRNMIPNKE------DLSDSPTPVPMTLTNPKLEITEQSDEKRLMVESMVQPIL 294
+++SS ++ ++ K L+ SPT + NPKLEITEQ+DE +LM+ES V+P+L
Sbjct: 222 ITESSVSKTLLNGKNMTNSAASLATSPTSNQL---NPKLEITEQADESKLMIESTVRPLL 278
Query: 295 EKHEKIRGFVWQFQGIYELLLDNLMNEQWEIRHGAALGLRELMKKHAPSVGRLSGKSKQD 354
E+HE + G VWQFQGIYELLLDNLM+E WEIRHGAALGLREL+KKHA V R+ G ++++
Sbjct: 279 EQHEIVAGLVWQFQGIYELLLDNLMSENWEIRHGAALGLRELVKKHAYGVSRVKGNTREE 338
Query: 355 NDSRNYCSLEDLATRLLTIFALDRFSDFVNDTAVAPVRESAAQTLATLLIHLDDEIALKV 414
N+ RN SLEDLA+RLLT+FALDRF D+V DT VAPVRES AQTLA LLIHLD +++K+
Sbjct: 339 NNLRNSRSLEDLASRLLTVFALDRFGDYVYDTVVAPVRESVAQTLAALLIHLDSTLSIKI 398
Query: 415 FQKLEQLVLQDPGLTGSPNKIWQATHGGLLGIRYFVSIKTDFLFKHXXXXXXXXXXXYGL 474
F LEQLVLQDP TG PNKIW+ATHGGLLGIRYFVSIKT+FLF H YGL
Sbjct: 399 FNCLEQLVLQDPLQTGLPNKIWEATHGGLLGIRYFVSIKTNFLFAHGLLENVVRIVLYGL 458
Query: 475 KESDDDVQSVSAAILSPITDDFVKLQTDTIDLVLTTVWNSLTHXXXXXXXXXXXXXXXXA 534
+SDDDVQSV+A+IL+PIT +FVKL TI++++TT+W+ L A
Sbjct: 459 NQSDDDVQSVAASILTPITSEFVKLNNSTIEILVTTIWSLLARLDDDISSSVGSIMDLLA 518
Query: 535 KLCKHEQVLAVLKQKSIDSPSEWSFKSLVPQLYPFLRHSITMVRKSVLNLLSAFLSLNDS 594
KLC H++VL +LK K+++ PSEWSFKSLVP+LYPFLRHSI+ VR++VLNLL AFLS+ D
Sbjct: 519 KLCDHQEVLDILKNKALEHPSEWSFKSLVPKLYPFLRHSISSVRRAVLNLLIAFLSIKDD 578
Query: 595 ATKNWINGKLFKLIYQNILLEQNVEVLDLSCKLYAAMLNGYVNSKGQEKSIDFVFSKYLT 654
+TKNW+NGK+F+L++QNILLEQN E+L LS +Y A+L Y K EK++D VFSK+L
Sbjct: 579 STKNWLNGKVFRLVFQNILLEQNPELLQLSFDVYVALLEHY-KVKHTEKTLDHVFSKHLQ 637
Query: 655 SILHLLITPIGEQGKNYAMDIQHITKPSSSYLINLERKRS--NATANSSNVTATYSHRVN 712
ILHLL TP+GE+GKNYAM+ Q+I KPS Y ++ E+KRS T +S + +N
Sbjct: 638 PILHLLNTPVGEKGKNYAMESQYILKPSQHYQLHPEKKRSISETTTDSDIPIPKNNEHIN 697
Query: 713 IDSPMLAGDVTLIGLDIIYNTRVKAAKTLGLTLSFFQESTLRSFFENVLASCLDLPYSTP 772
ID+PM+AGD+TL+GLD+I NTR+ AK LTLS FQ+STL+SFF NVL CL+LP+STP
Sbjct: 698 IDAPMIAGDITLLGLDVILNTRIMGAKAFALTLSMFQDSTLQSFFTNVLVRCLELPFSTP 757
Query: 773 RMLVAIVLSSFCTNW-KENQQHNPVPAFMSTLFSSXXXXXXXXXXXXPVFRELTPILKAL 831
RML I++S FC++W +++ + +P+F+S +FS PVFREL P LKAL
Sbjct: 758 RMLAGIIVSQFCSSWLQKHPEGEKLPSFVSEIFSPVMNKQLLNRDEFPVFRELVPSLKAL 817
Query: 832 RTQCQSLMTTFVDVGMLPPQRVPAIAIIVKGEPEAGPEAFSIQTAEKVQTEFYAKLFSLL 891
RTQCQSL+ TFVDVGMLP ++P +AI+V+GE EAGP AF ++TAEKV E+Y K+F +
Sbjct: 818 RTQCQSLLATFVDVGMLPQYKLPNVAIVVQGETEAGPHAFGVETAEKVYGEYYDKMFKSM 877
Query: 892 PNAQKILAQKPLEDARYRVSLAIESAKESERERQLEVLSSYASAVMLIDGLPNKLNPLIR 951
N+ K+LA+KPLED+++RV +AI SAKES + R +L++YAS+++L DGLP KLNP+IR
Sbjct: 878 NNSYKLLAKKPLEDSKHRVLMAINSAKESAKLRTGSILANYASSILLFDGLPLKLNPIIR 937
Query: 952 SLMDNVKSEKHTILQQTSGDSIVNLISELVSAQKHNVANKIVKNLCGFICVDTSEVPEF- 1010
SLMD+VK E++ LQ +G+S+V+LI +L+ K NV+ KIVKNLCGF+CVDTSEVP+F
Sbjct: 938 SLMDSVKEERNEKLQTMAGESVVHLIQQLLENNKVNVSGKIVKNLCGFLCVDTSEVPDFS 997
Query: 1011 -DGTNTTVITTLVKEAASLSLQEDSEMKKMTESARIKRKGGMHTLMKLLIKFQEKTLEVV 1069
+ I TL+KE+ S++ Q+D + KM+E A++KRKGG+ TL L L+ +
Sbjct: 998 VNAEYKEKILTLIKESNSIAAQDDINLAKMSEEAQLKRKGGLITLKILFEVLGPSILQKL 1057
Query: 1070 PQLKKSLFEPLEKIDILSSNGDETTFK---KTGQEIVDAFGIIRALFTYMPESVQDEEVL 1126
PQL+ LF D LS + +E K + GQ+IVD+FG++RALF +M +S++ EV
Sbjct: 1058 PQLRSILF------DSLSDHENEEASKVDNEQGQKIVDSFGVLRALFPFMSDSLRSSEVF 1111
Query: 1127 SRLPVFRDFLRSNVSVIRYSAARTLSELACHKPVVLMSYVITDILPMLNNAGSVTDRQGV 1186
+R PV FLRSN+SV RYSAART ++LA V +M+Y I +ILP++N+AGS++DRQG
Sbjct: 1112 TRFPVLLTFLRSNLSVFRYSAARTFADLAKISSVEVMAYTIREILPLMNSAGSLSDRQGS 1171
Query: 1187 VELLYHLSIQLESDILPYVVFLIVPLLGRMSDSNEDIRKLATTTFASIIKLVPLEAGIAA 1246
EL+YHLS+ +E+D+LPYV+FLIVPLLGRMSDSNED+R LATTTFASIIKLVPLEAGIA
Sbjct: 1172 TELIYHLSLSMETDVLPYVIFLIVPLLGRMSDSNEDVRNLATTTFASIIKLVPLEAGIAD 1231
Query: 1247 PVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHL 1306
P GL EEL+ RE+ERDFIQQMMDPSKAKPFKLP+AIKATLRKYQQDGVNWLAFLNKYHL
Sbjct: 1232 PKGLPEELVASRERERDFIQQMMDPSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHL 1291
Query: 1307 HGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEF 1366
HGILCDDMGLGKTLQTICIIASDQYLR EDY+KT+S ++R TGHWE EF
Sbjct: 1292 HGILCDDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLIICPPSLTGHWENEF 1351
Query: 1367 QQYSPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGH 1426
QY+P L V+VYAGGP+VR L+ Q+ ADI+VTSYDVARND+ L K +YNYCVLDEGH
Sbjct: 1352 DQYAPFLKVVVYAGGPTVRLTLRPQLSDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGH 1411
Query: 1427 IIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAK 1486
IIKNSQSKLAKAVK I +NHRL+LTGTPIQNNV+ELWSLFDFLMPGFLGTEKMFQERFAK
Sbjct: 1412 IIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAK 1471
Query: 1487 PIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDL 1546
PIA+SRNSKTSSK HKQVLPFMLRRLKE+VLSDLPPKIIQDYYCEL DL
Sbjct: 1472 PIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDL 1531
Query: 1547 QKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQV 1606
QKQLY DF KKQKNVVEKDIEN+ + KQHIFQALQYMRKLCNHP+LVL+ +HPQ QV
Sbjct: 1532 QKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQV 1591
Query: 1607 QSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKS--NKNPSIDNVISQHRVLI 1664
Q YL QTG+DLHDI +APKL AL+TLL ECGIG +D++KK+ ++N I NVISQHR LI
Sbjct: 1592 QDYLKQTGLDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVISQHRALI 1651
Query: 1665 FCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXX 1724
FCQLKDMLDMVENDL KK++PSVT+MRLDGS+D RDRQKVVRKFNEDPSIDC
Sbjct: 1652 FCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVG 1711
Query: 1725 XXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQK 1784
ADTVIFVEHDWNPMNDLQAMDRAHR+GQKKVVNVYRIITKGTLEEKIMGLQK
Sbjct: 1712 GLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQK 1771
Query: 1785 FKMNIASTIVNQQNAGLGSMNTHQLLDLFDADNIPSQ-------XXXXXXXXXXXXANES 1837
FKMNIAST+VNQQN+GL SM+THQLLDLFD DN+ SQ ANE+
Sbjct: 1772 FKMNIASTVVNQQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAAKGMEDIANET 1831
Query: 1838 GLTGKAKEAVGELKELWDSSQYEEEYNLDNFIKTLR 1873
GLTGKAKEA+GELKELWD SQYEEEYNLD FIKTLR
Sbjct: 1832 GLTGKAKEALGELKELWDPSQYEEEYNLDTFIKTLR 1867
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 1029 bits (2661), Expect = 0.0
Identities = 670/1961 (34%), Positives = 1013/1961 (51%), Gaps = 208/1961 (10%)
Query: 6 SRLDRQVILLETGSTQVVRNMAADQLGDLAKQHPEQTLPLLSRVYPYLLSKQWETRVTAA 65
SRLDR ILL+TG+T V R AA QLG++ K HP + LLS+V YL S W+TR+ A
Sbjct: 4 SRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLIYLRSANWDTRIAAG 63
Query: 66 RAVGGIVSHAPLWDPNADDEESKNPQTQQPLGPESAKVKIEEEMKVKLEE-----LSHTD 120
+AV IV + P W+P + ++ P + ++ + +L + L
Sbjct: 64 QAVEAIVKNVPEWNPVPRTRQEPTSESSMEDSPTTERLNFDRFDICRLLQHGASLLGSAG 123
Query: 121 EWNELQDDTHYFTLNSWXXXXXXXXXXXXXXXXXNDYESKALNINNNGSADIEQDDANNV 180
E+QD+ K L +N + + ++ N
Sbjct: 124 AEFEVQDEK------------SGEVDPKERIARQRKLLQKKLGLNMGEAIGMSTEELFND 171
Query: 181 KHLKKEDSFADLKKENSTDSLADEDTVNETKESKRSARMLAMARRKKKIQAKTVNKKPVD 240
+ L + A + T L + ++ + S R A+R K+ AK ++ V+
Sbjct: 172 EDLDYTPTSASFVNKQPT--LQAAELIDSEFRAGMSNRQKNKAKRMAKLFAKQRSRDAVE 229
Query: 241 LSQSSATRNMIPNKEDLSDSPTPVPMTLTNPKLEITEQSDEKRLMVESMVQP---ILEKH 297
++ S + P + N + I + +++ +++++++ I E +
Sbjct: 230 TNEKS--------NDSTDGEPEEKRRKIAN--VVINQSANDSKVLIDNIPDSSSLIEETN 279
Query: 298 EKIRGFVWQFQGIYELLLDNLMNEQWEIRHGAALGLRELMKKHAPSVGRLSGKSKQDNDS 357
E W + E L ++L N WE+RHGA GLRE++K H S G++ + ++
Sbjct: 280 E------WPLESFCEELCNDLFNPSWEVRHGAGTGLREILKAHGKSGGKMGDSTLEEMIQ 333
Query: 358 RNYCSLEDLATRLLTIFALDRFSDFVNDTAVAPVRESAAQTLATLLIHLDDEIALKVFQK 417
++ LEDL RLL +FALDRF DFV+D VAPVRE+ AQTL +L H+++ K
Sbjct: 334 QHQEWLEDLVIRLLCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKHMNETGVHKTVDV 393
Query: 418 LEQLVLQDPGLTGSPNKIWQATHGGLLGIRYFVSIKTDFLFKHXXXXXXXXXXXYGLKES 477
L +L+ Q+ W+ HGGLLGI+Y ++++ D + + GL++
Sbjct: 394 LLKLLTQEQ---------WEVRHGGLLGIKYALAVRQDVI--NTLLPKVLTRIIEGLQDL 442
Query: 478 DDDVQSVSAAILSPITDDFVKLQTDTIDLVLTTVWNSLTHXXXXXXXXXXXXXXXXAKLC 537
DDDV++V+AA L P+ + V LQT + ++ T+W++L + L
Sbjct: 443 DDDVRAVAAASLVPVVESLVYLQTQKVPFIINTLWDALLELDDLTASTNSIMTLLSS-LL 501
Query: 538 KHEQVLAVLKQKSIDSPSEWSFKSLVPQLYPFLRHSITMVRKSVLNLLSAFLSLNDSATK 597
+ QV +Q SI S LVP+++PFL H+I+ VR++ L L LS D +
Sbjct: 502 TYPQV----QQCSIQQ----SLTVLVPRVWPFLHHTISSVRRAALETLFTLLSTQDQNSS 553
Query: 598 NW---INGKLFKLIYQNILLEQNVEVLDLSCKLYAAMLNGYVNSKGQEKSIDFVFSKYLT 654
+W I + + I+Q +LE + E+LDL K++ +L SK + + ++
Sbjct: 554 SWLIPILPDMLRHIFQFCVLESSQEILDLIHKVWMELL-----SKASVQYVVAAACPWMG 608
Query: 655 SILHLLITPIGEQGKNYAMDIQHITKPSSSYLINLERKRSNATANSSNVTATYSHRVNID 714
+ L L++ P + +D+ + LE K V S +
Sbjct: 609 AWLCLMMQP-----SHLPIDLNML----------LEVKARAKEKTGGKVRQGQSQNKEVL 653
Query: 715 SPMLAGDVTLIGLD-----IIYNTRVKAAKTLGLTLSFF---------QESTLRSFFENV 760
+AG T++ ++ R+ AAK LG QE +
Sbjct: 654 QEYIAGADTIMEDPATRDFVVMRARMMAAKLLGALCCCICDPGVNVVTQEIKPAESLGQL 713
Query: 761 LASCLDLPYSTPRMLVAIVLSSFCTNWKENQQHNPV--PAFMSTLFSSXXXXXXXXXXXX 818
L L+ + R+ VA+V+ + KE + P + L
Sbjct: 714 LLFHLNSKSALQRISVALVICEWAALQKECKAVTLAVQPRLLDILSEHLY---------- 763
Query: 819 PVFRELTPILKALRTQCQSLMTTFVDVGMLPPQRVPAIAIIVKGEPEAGPEAFSIQTAEK 878
+ E+ ++ +C+ L+++ DV + RV + + Q ++
Sbjct: 764 --YDEIAVPFTRMQNECKQLISSLADVHIEVGNRVNNNVLTID------------QASDL 809
Query: 879 VQTEFYAKLFSLLPNAQKILAQKPLEDARYRVSLAIESAKESERERQLEVLSSYASAVML 938
V T F S N Q + + L+ R +V + + + + QL V + A AV+
Sbjct: 810 VTTVFNEATSSFDLNPQVL---QQLDSKRQQVQMTVTETNQEWQVLQLRVHTFAACAVVS 866
Query: 939 IDGLPNKLNPLIRSLMDNVKSEKHTILQQTSGDSIVNLISELVSAQKHNVANKIVKNLCG 998
+ LP KLNP+I+ LM+ +K E++T++Q + I L+ + + + +KI+KNLC
Sbjct: 867 LQQLPEKLNPIIKPLMETIKKEENTLVQNYAAQCIAKLLQQCTT-RTPCPNSKIIKNLCS 925
Query: 999 FICVD-------TSEVP-------------EFDGTNTTV------ITTLVKEAASLSLQE 1032
+CVD T VP E DG + TV IT + A+ ++
Sbjct: 926 SLCVDPYLTPCVTCPVPTQSGQENSKGSTSEKDGMHHTVTKHRGIITLYRHQKAAFAITS 985
Query: 1033 DS------------------------EMKKMTESARIKRKGGMHTLMKLLIKFQEKTLEV 1068
E+ + + ++R+G L ++ F +
Sbjct: 986 RRGPTPKAVKAQIADLPAGSSGNILVELDEAQKPYLVQRRGAEFALTTIVKHFGGEMAVK 1045
Query: 1069 VPQLKKSLFEPLEK-IDILSSNGDETTFK--KTGQEIVDAFGIIRALFTYMPESVQDEEV 1125
+P L ++ PL IDI + +G K QE+V++ + M +S +
Sbjct: 1046 LPHLWDAMVGPLRNTIDINNFDGKSLLDKGDSPAQELVNSLQVFETAAASM-DSELHPLL 1104
Query: 1126 LSRLPVFRDFLRSNVSVIRYSAARTLSELACHKPVVLMSYVITDILPMLNNAGSVTDRQG 1185
+ LP L+ + +R+ AAR + ++ + M+ + +LP L ++G
Sbjct: 1105 VQHLPHLYMCLQYPSTAVRHMAARCVGVMSKIATMETMNIFLEKVLPWLGAIDDSVKQEG 1164
Query: 1186 VVELLYHLSIQLESDILPYVVFLIVPLLGRMSDSNEDIRKLATTTFASIIKLVPLEAGIA 1245
+E L + QL+ I+PY+V L+VP+LGRMSD + +R +AT FA++I+L+PLEAGI
Sbjct: 1165 AIEALACVMEQLDVGIVPYIVLLVVPVLGRMSDQTDSVRFMATQCFATLIRLMPLEAGIP 1224
Query: 1246 APVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYH 1305
P +S EL++ + KER F++Q++D K + +K+PV I A LRKYQQDGVNWLAFLNKY
Sbjct: 1225 DPPNMSAELIQLKAKERHFLEQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYK 1284
Query: 1306 LHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQE 1365
LHGILCDDMGLGKTLQ+ICI+A D R+++Y +++ + TGHW E
Sbjct: 1285 LHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDE 1344
Query: 1366 FQQYSPT--LNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLD 1423
++ LN L Y G P+ R LQ QV +++V SYDV RND+DF + +NYC+LD
Sbjct: 1345 VGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILD 1404
Query: 1424 EGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQER 1483
EGH+IKN ++KL+KAVK + +N+R++L+GTPIQNNV+ELWSLFDFLMPGFLGTE+ F R
Sbjct: 1405 EGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAAR 1464
Query: 1484 FAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCEL 1543
+ KPI +SR++++SS+ H+QVLPF+LRR+KE+VL DLPPKIIQDYYC L
Sbjct: 1465 YGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTL 1524
Query: 1544 SDLQKQLYNDFVK-KQKNVVEKDIENTAEVENKQ--------HIFQALQYMRKLCNHPSL 1594
S LQ QLY DF K + K V++ + + E + H+FQALQY+RKLCNHP+L
Sbjct: 1525 SPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPAL 1584
Query: 1595 VLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSID 1654
VL HP+F+ L+ LHDI HAPKL ALK LLL+CG+G S +
Sbjct: 1585 VLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLG-----NGSTSESGTE 1639
Query: 1655 NVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSI 1714
+V++QHR+LIFCQLK MLD+VE+DLLK HLPSVT++RLDGS+ R +V +FN DPSI
Sbjct: 1640 SVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSI 1699
Query: 1715 DCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGT 1774
D ADTV+FVEHDWNPM DLQAMDRAHR+GQK+VVNVYR+IT+GT
Sbjct: 1700 DVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1759
Query: 1775 LEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDADNIPSQXXXXXXXXXXXXA 1834
LEEKIMGLQKFKMNIA+T+++Q+N+ L SM T QLLDLF D
Sbjct: 1760 LEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDK-----------DGKAEK 1808
Query: 1835 NESGLTGKA--KEAVGELKELWDSSQYEEEYNLDNFIKTLR 1873
++ +GKA K + L +LWD QY+ EY+L+NF+ +L+
Sbjct: 1809 ADTSTSGKASMKSILENLSDLWDQEQYDSEYSLENFMHSLK 1849
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 769 bits (1987), Expect = 0.0
Identities = 526/1619 (32%), Positives = 812/1619 (49%), Gaps = 167/1619 (10%)
Query: 358 RNYCSLEDLATRLLTIFALDRFSDFVNDTAVAPVRESAAQTLATLLIHLDDEIALKVFQK 417
+N+ L+D R L + +LDRF D+++D VAPVRE+ AQ L +++ + +
Sbjct: 492 KNFEFLQDCTIRFLCVLSLDRFGDYISDQVVAPVREACAQALGATFKYMNPSLIYETLNI 551
Query: 418 LEQLVLQDPGLTGSPNKIWQATHGGLLGIRYFVSIKTDFLFKHXXXXXXXXXXXYGLKES 477
L Q+ + W+ HG LLGI+Y V+++ + L GL++S
Sbjct: 552 LLQMQRRPE---------WEIRHGSLLGIKYLVAVRQEML--QDLLGYILPACKAGLEDS 600
Query: 478 DDDVQSVSAAILSPITDDFVKLQTDTIDLVLTTVWNSLTHXXXXXXXXXXXXXXXXAKLC 537
DDDV++V+A L P V L+ T+ ++ +W+ L
Sbjct: 601 DDDVRAVAADALIPAAAAIVSLRGQTLLSIVMLLWDILLELDDLSPSTSSIMNLLAEIYS 660
Query: 538 KHEQVLAVLKQKSIDSP----------------------SEWSFKSLVPQLYPFLRHSIT 575
+ + L + ++ S+ S ++ L P+L+PF RH IT
Sbjct: 661 QDDMTLVMHEELSLGEEQNIELNEMGHIESIGERRDVKESPYALSGLAPRLWPFTRHDIT 720
Query: 576 MVRKSVLNLLSAFLSLN-------DSATKNW---INGKLFKLIYQNILLEQNVEVLDLSC 625
VR S + L L S + W I G ++++QN+LLE E+L+ S
Sbjct: 721 SVRFSAIRTLERLLEAGCRKNISGQSKSSFWPSSILGDTLRIVFQNLLLESTEEILECSE 780
Query: 626 KLYAAMLNGYVNSKGQEKSIDFVFSKYLTSILHLLITPIGEQGKNYAMDIQHITKPSSSY 685
+++ ++ V+ E + F Y+ S + L TP G M + P S+
Sbjct: 781 RVWRLLVQCPVDDL--EDTAKF----YMASWIELAATPYGSTLDATKM-FWPVAPPRKSH 833
Query: 686 LINLERKRSNATANSSNVTATYSHRVNIDSPMLAGDVT------LIGLDI---IYNTRVK 736
+ ++ N ++ + + + S D + ++G D+ + TRV
Sbjct: 834 FKAAAKMKAVKLENEASSILGFDYARSSASLEKQEDASARSTKIIVGSDMEMSVTRTRVV 893
Query: 737 AAKTLGLTLSFFQESTLRSFFENVLASCLDLPYSTPRMLVAIVLSSFCTNWK---ENQQH 793
A LG+ S +E +++ F + L+S L R + +IVL S+ K +
Sbjct: 894 TASALGIFASRLREGSMQ-FVVDPLSSTLTSMSGVQRQVGSIVLISWFRETKCKAPSDGS 952
Query: 794 NPVPAFMSTLFSSXXXXXXXXXXXXPV------FRELTPILKALRTQCQSLMTT------ 841
+P F S L P + EL+ +R + L+ T
Sbjct: 953 GSLPGFPSPLKKWLLDLLACADPAFPTKDIFLPYAELSRTYTKMRNEASQLLHTVETCHC 1012
Query: 842 ---FVDVGMLPPQRVPAIAII-------VKGEPEAGPEAFSIQTAEKVQTEFYAKLFSLL 891
+ L + V A I + + AG E+ Q E V++
Sbjct: 1013 FDKLLSTNKLNVESVTADETIDFASTLDLWNKESAGNESLEKQVFEDVESS--------- 1063
Query: 892 PNAQKILAQKPLEDARYRVSLAIESAKESERERQLEVLSSYASAVMLIDGLPNKLNPLIR 951
Q+ L A Y K + + V S A+AV+ + P +LNP+I
Sbjct: 1064 -------RQQLLSTAGY--------LKCVQSNLHITVTSLVAAAVVWMSEFPARLNPIIL 1108
Query: 952 SLMDNVKSEKHTILQQTSGDSIVNLISELVSAQKHNVANKIVKNLCGFICVDTSEVPEFD 1011
LM ++K E+ ILQQ + +++ LI+ V +K + +K++KN+C C+D SE P+
Sbjct: 1109 PLMASIKREQEQILQQIAAEALAELIAYCVD-RKPSPNDKLIKNICSLTCMDPSETPQAS 1167
Query: 1012 GTNTTVITTLVKEAASLSLQEDSEMKKMTESAR--------IKRKGGMHTLMKLLIKFQE 1063
++ I + +S S + K + S I R+G L L +KF
Sbjct: 1168 IISSMDIVDDMDFLSSRSNTGKQKAKVVLASGEDRSKVEGFITRRGSELALKHLSLKFGG 1227
Query: 1064 KTLEVVPQLKKSLFEPLEKIDILSSNGDETTFKKTGQEIVDAFGIIRALFTYMPESVQDE 1123
+ +P+L + L E L + + S+ + K E + ++R++ M E+++
Sbjct: 1228 SLFDKLPKLWECLTEVL--VPEIPSDQQKIDLKI---ESISDPQVVRSIAPVMEETLKPR 1282
Query: 1124 EVLSRLPVFRDFLRSNVSVIRYSAARTLSELACHKPVVLMSYVITDILPMLNNAGSVTDR 1183
+LS LP +R + +R +A+R + +A +M+ V+ +PML + ++ R
Sbjct: 1283 -LLSLLPCIFKCVRHSHVAVRLAASRCVMTMAKSMTTDVMAAVVESAIPMLGDLTCISGR 1341
Query: 1184 QGVVELLYHLSIQLESDILPYVVFLIVPLLGRMSDSNEDIRKLATTTFASIIKLVPLEAG 1243
QG L+ L L +++PY L+VPLL MSD + +R+ T +FA+++ ++PL G
Sbjct: 1342 QGAGMLIGLLVQGLGVELVPYSPLLVVPLLRCMSDVDSSVRQSVTRSFAALVPMLPLARG 1401
Query: 1244 IAAPVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNK 1303
+ PVGLS++L E + F++Q++D S +KL +K LR+YQQ+G+NWL FL +
Sbjct: 1402 VPPPVGLSKDLSSNAEDAK-FLEQLLDNSHIDDYKLCTELKVQLRRYQQEGINWLGFLKR 1460
Query: 1304 YHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWE 1363
+ LHGILCDDMGLGKTLQ I+ASD R + +++ GHW
Sbjct: 1461 FKLHGILCDDMGLGKTLQASAIVASDAAER-----RGSTDELDVFPSIIVCPSTLVGHWA 1515
Query: 1364 QEFQQYSPT--LNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCV 1421
E ++Y L+VL Y G R L+ Q ++++TSYDV R DVD+L ++ +NYC+
Sbjct: 1516 FEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVVRKDVDYLTQFSWNYCI 1575
Query: 1422 LDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQ 1481
LDEGHIIKN++SK+ AVK + + HRL+L+GTPIQNN++ELWSLFDFLMPGFLGTE+ FQ
Sbjct: 1576 LDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQ 1635
Query: 1482 ERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYC 1541
+ KP+ ++R+ K S+K HKQV+PF+LRR KEEVLSDLP KIIQD YC
Sbjct: 1636 ASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYC 1695
Query: 1542 ELSDLQKQLYNDF-----------VKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCN 1590
+LS +Q +LY F + K + + A + H+FQALQY+ KLC+
Sbjct: 1696 DLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKLCS 1755
Query: 1591 HPSLVLNS--SHPQFQQVQSYL---SQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEK 1645
HP LVL + P + + + S +LH + H+PKL AL+ +L ECGIG
Sbjct: 1756 HPLLVLGDKVTEPVASDLAAMINGCSDIITELHKVQHSPKLVALQEILEECGIG----SD 1811
Query: 1646 KSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVV 1705
S+ + ++ + QHRVLIF Q K +LD++E DL + H+ SVT+MRLDGSV R ++V
Sbjct: 1812 ASSSDGTLS--VGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIV 1869
Query: 1706 RKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMND-----------LQAMDR 1754
+ FN DP+ID ADT++F+EHDWNPM D QAMDR
Sbjct: 1870 KAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDR 1929
Query: 1755 AHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFD 1814
AHRLGQK+VVNV+R+I +GTLEEK+M LQKFK+++A+T++N +NA + +MNT QLLDLF
Sbjct: 1930 AHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLF- 1988
Query: 1815 ADNIPSQXXXXXXXXXXXXANESGLTGKAKEAV-GELKELWDSSQYEEEYNLDNFIKTL 1872
A S+ ++ TGK +A+ G L+ELWD SQY EEYNL F+ L
Sbjct: 1989 ASAETSKKGGGSSKKGSEDNDQIAGTGKGMKAILGNLEELWDQSQYTEEYNLSQFLTKL 2047
Score = 86.3 bits (212), Expect = 4e-16
Identities = 95/415 (22%), Positives = 173/415 (40%), Gaps = 64/415 (15%)
Query: 4 QESRLDRQVILLETGSTQVVRNMAADQLGDLAKQHPEQTLPLLSRVYPYLLSKQWETRVT 63
Q SRL+R + LL+TGSTQ R AA Q+GD+AK HP+ LL +V +L SK+W+TRV
Sbjct: 5 QSSRLNRLLTLLDTGSTQATRLTAAKQIGDIAKSHPQDLSSLLRKVLHHLRSKKWDTRVA 64
Query: 64 AARAVGGIVSHAPLWDPNADDEESKNPQTQQPLGPESAKVKIEEEMKVKLEELSHTDEWN 123
AA A+G IV + K+P + L + KL E +D +
Sbjct: 65 AAHAIGAIVLNV------------KHPSLSELL----------NSLATKLGEAGISDNVD 102
Query: 124 EL----QDDTHYFTLNSWXXXXXXXXXXXXXXXXXNDYESKALNINNNGSADIEQDDANN 179
E+ + + E LN N+ D N
Sbjct: 103 EVVAFRNLQSKILANAPFRSFEMNKVLEFGALLASGGQEYDILNDNSKNPRDRVARQKKN 162
Query: 180 VKH---LKKEDSFADLKKENSTDSLADEDTVNETKESKRSA---RMLA----------MA 223
++ L + F D+ + + DED + + + R+ A ++
Sbjct: 163 LRRRLGLDMCEQFMDV-----NEMIRDEDLIEQKSNVPANGVGNRLYANCSPHHIQQFVS 217
Query: 224 RRKKKIQAKTVNKKPVDLSQSSA---TRNMIPNKEDLSDSPTPVPMTLTNPKLEITEQSD 280
R ++ ++ + + ++L + A +++ +++D + K +++ D
Sbjct: 218 RMVPRVNSRRPSARELNLLKRKAKISSKDQAKGSCEVADVEMSSSHVASTSKRILSDSLD 277
Query: 281 EKRLMV--ESMVQPILEKHEKIRGFVWQFQGIYELLLDNLMNEQWEIRHGAALGLRELMK 338
+ + E ++P + FV Q L+LD + + WEIRHG+ + LRE++
Sbjct: 278 SSKADIGNEDDIEPDGDGKWPFHSFVEQ------LILD-MFDPAWEIRHGSVMALREILM 330
Query: 339 KHAPSVGRLSGKSKQDNDSRNYCSLEDLATRLLTIFALDRFSDFVNDTAVAPVRE 393
H G +G S ++ S N L+D+ ++ +D + V++ + P+R+
Sbjct: 331 LH----GGSAGVSTEEFSSDNGFELKDVLNKVTREREID-LNMQVSENELEPLRK 380
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 724 bits (1868), Expect = 0.0
Identities = 364/630 (57%), Positives = 448/630 (70%), Gaps = 9/630 (1%)
Query: 1250 LSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGI 1309
L + LL REKER F++QM++PSK + F +PV I A LRKYQQ+GVNWLAFLNKY LHGI
Sbjct: 3 LPQYLLDSREKERKFLEQMLNPSKVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELHGI 62
Query: 1310 LCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY 1369
LCDDMGLGKTLQTICI+ASD Y R + ++++ S K GHW+QE Y
Sbjct: 63 LCDDMGLGKTLQTICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTY 122
Query: 1370 SPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIK 1429
+P L V Y G P+ R ++ ++ +D+VVTSYD+ RNDVD L K D+NYCVLDEGH+IK
Sbjct: 123 APFLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIK 182
Query: 1430 NSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIA 1489
N+++KL KAVK + S HRL+L+GTPIQNNV+ELWSLFDFLMPGFLGTEK FQERF +PIA
Sbjct: 183 NARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIA 242
Query: 1490 SSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQ 1549
+SR++K+SSK HKQVLPFMLRRLKE+VL+DLPPKIIQDYYC++SDLQ++
Sbjct: 243 ASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRK 302
Query: 1550 LYNDFVKK-------QKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQ 1602
L NDFV + + + EK + K HIFQALQYMRKLCNHP+L+L HP+
Sbjct: 303 LLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHPK 362
Query: 1603 FQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRV 1662
+ L++ LHD+ HAPKL AL LL +CG+G V + + ++ N +S+HRV
Sbjct: 363 RNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSV-NSNGIDSALTNAVSEHRV 421
Query: 1663 LIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXX 1722
LIFCQLKDMLDMVE DLL+ +P VT+MRLDGSV+ RQ+ V KFN DPSID
Sbjct: 422 LIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTH 481
Query: 1723 XXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGL 1782
ADTVIFVEHDWNPM DLQAMDRAHR+GQKKVVNVYR+IT+G LEEKIMGL
Sbjct: 482 VGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGL 541
Query: 1783 QKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDADNIPSQXXXXXXXXXXXXANESGLTGK 1842
Q+FKMN+AST+VNQQNAGL S+ T Q+LDLF+ Q A GL+G
Sbjct: 542 QRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEESEDAAGRGLSGT 601
Query: 1843 AKEAVGELKELWDSSQYEEEYNLDNFIKTL 1872
+K+A+ L E+WD SQY +E+NLD FI TL
Sbjct: 602 SKKALEGLPEMWDESQY-DEFNLDGFISTL 630
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 699 bits (1805), Expect = 0.0
Identities = 402/987 (40%), Positives = 569/987 (56%), Gaps = 51/987 (5%)
Query: 903 LEDARYRVSLAIESAKESERERQLEVLSSYASAVMLIDGLPNKLNPLIRSLMDNVKSEKH 962
LE+ R + + + + + ++ A A+ + LP+KLNP+++ LM+++K E+
Sbjct: 909 LEERRRSLQASYQQTTSEQSAYHVSAQAALAGAICALHCLPDKLNPVVKPLMESIKREQC 968
Query: 963 TILQQTSGDSIVNLISELVSAQKHNVANKIVKNLCGFICVDTSEVPEFDGTNTT-VITTL 1021
LQQ S + +V+L+ + V+ G + P G T I +
Sbjct: 969 LQLQQLSAEFLVHLMDQTVTTTNTR------SGAGGATTPTATTAPRGPGRPPTGEILSA 1022
Query: 1022 VKEAASLSLQEDSEMKKMTESARIKRKGGMHTLMKLLIKFQEKTLEVVPQLKKSLFEPLE 1081
A + L+ + + RI+R G + KL F E+ +E V + +F +E
Sbjct: 1023 TNATAHIELKAQQAKEAEAKQCRIQRLGAACAIEKLCRIFGEQIIEKVAVFQHLMFGKVE 1082
Query: 1082 KIDILSSN---GDETTFKKTGQEIVDAFGIIRALFTYMPESVQDEEVLSRLPVFRDFLRS 1138
+ + + G E+V + +I ++ ++ + + + LP +
Sbjct: 1083 QFVKEAYDWRLGSLLPDLGVCNELVSSMQLIETAAPHLHVALHPQ-MFALLPSLGFIVCH 1141
Query: 1139 NVSVIRYSAARTLSELACHKPVVLMSYVITDILPMLNNAGSVTDRQGVVELLYHLSIQLE 1198
+ +R+ AAR ++ LA M +V+ D+LP+L + +RQG +E + + +L+
Sbjct: 1142 PLKAVRHMAARCIAVLAEIDACQTMQFVVHDLLPLLGKIEQLIERQGAIEAIERVVSRLQ 1201
Query: 1199 SDILPYVVFLIVPLLGRMSDSNEDIRKLATTTFASIIKLVPLEAGIAAPVGLSEELLRGR 1258
++PY+V L+VPLLG MSD +E +R L+T FA++++L+PL+ L + L+ R
Sbjct: 1202 IKVVPYIVLLVVPLLGAMSDPDESVRLLSTHCFANLVQLMPLDGKTEQ---LKSDPLQAR 1258
Query: 1259 E-KERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLG 1317
+ ++R+F+ + +P +K+PV I LR YQQ G+NWL FLNKY+LHGILCDDMGLG
Sbjct: 1259 KTRDREFLDYLFNPKSIPNYKVPVPISVELRCYQQAGINWLWFLNKYNLHGILCDDMGLG 1318
Query: 1318 KTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY---SPTLN 1374
KTLQTICI+A D R Q+ TGHW E +++ L
Sbjct: 1319 KTLQTICILAGDHMHR-------QTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLR 1371
Query: 1375 VLVYAGGPSVRYPLQGQVPT-ADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQS 1433
L Y G P R L+ + T ++VV SYD R D+DF +NYCVLDEGHIIKN ++
Sbjct: 1372 PLHYYGFPVGREKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKT 1431
Query: 1434 KLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRN 1493
K +KA+K + +NHRL+L+GTPIQNNV+ELWSLFDFLMPGFLGTEK F +RF++PI SSR+
Sbjct: 1432 KSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRD 1491
Query: 1494 SKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYND 1553
+K+S+K H+QVLPF+LRR+KE+VL DLPPKI QD CELS LQ +LY D
Sbjct: 1492 AKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYED 1551
Query: 1554 FVKKQ-KNVVEKDIEN------TAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQV 1606
F K K+ ++K ++ T + K HIFQAL+Y++ +CNHP LVL S + +V
Sbjct: 1552 FSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSE-ELTKV 1610
Query: 1607 QSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFC 1666
S L+ + L DI H+ KL ALK LLL+CGIG+Q +SQHR LIFC
Sbjct: 1611 TSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQ------------TESVSQHRALIFC 1658
Query: 1667 QLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXX 1726
QLK MLD+VE DLL++HLPSVT++RLDGSV + RQ +V FN DPSID
Sbjct: 1659 QLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGL 1718
Query: 1727 XXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFK 1786
ADTVIFVEHDWNPM DLQAMDRAHR+GQKKVVNVYR+IT+ +LEEKIMGLQKFK
Sbjct: 1719 GLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFK 1778
Query: 1787 MNIASTIVNQQNAGLGSMNTHQLLDLFDADNIPSQXXXXXXXXXXXXANESGLTGKAKEA 1846
+ A+T+V+ +NA L +M T Q+ DLF+ S T
Sbjct: 1779 ILTANTVVSAENASLQTMGTSQIFDLFNGGKDKGAESGSSAVQGTASGGMSMNT-----I 1833
Query: 1847 VGELKELWDSSQYEEEYNLDNFIKTLR 1873
+ L ELW QYEEEY+L NF++ L+
Sbjct: 1834 IENLPELWSEHQYEEEYDLGNFVQALK 1860
Score = 182 bits (463), Expect = 3e-45
Identities = 169/631 (26%), Positives = 258/631 (40%), Gaps = 88/631 (13%)
Query: 6 SRLDRQVILLETGSTQVVRNMAADQLGDLAKQHPEQTLPLLSRVYPYLLSKQWETRVTAA 65
SRLDR ILLETGST R AA Q+G++ K +P + LL+R+ YL S WETR+ AA
Sbjct: 3 SRLDRLFILLETGSTAATRQAAAKQIGEVQKLYPHELHALLNRLVGYLHSTSWETRIAAA 62
Query: 66 RAVGGIVSHAPLWDPNADDEESK-----NPQTQQPLGPESAKVKIEEEMKVKLEELSHTD 120
+ V I+ P W P K N T E + E L D
Sbjct: 63 QTVEAILKQVPPWQPEFQVLPKKERCATNTATAAAAAEEDSCQSSGSNSTTASERLLSFD 122
Query: 121 EWNELQDDTHYFTLNSWXXXXXXXXXXXXXXXXXNDYESKALNINNNGSADIEQDDANNV 180
E+ +LQ H N+++ + + G ++D +
Sbjct: 123 EF-DLQQILH--------------KGARLIGSEGNEFDVQEEQPASGGG----EEDRSLA 163
Query: 181 KHLKKEDSFADLKKE---------NSTDSLADED--------TVNETKESKRSARML--- 220
L ++ + + K N TD + DED T N E +L
Sbjct: 164 SRLSRQRAVLNDKLGLTTAAKLGVNLTDMITDEDVALNRSGSTYNVNAEKLPVEHLLNIK 223
Query: 221 --------------AMARRKKKIQAKTVNKKPVDLSQSSATRNMIPNKEDLSD--SPTPV 264
M R K+K + T ++ + + RN N S+ S
Sbjct: 224 TAANGSGQAPLSCREMNRAKRKARQNTSGCSVTAVTPTCSRRNSNSNHSTGSNHSSNGTT 283
Query: 265 PMTLTNPKLEITEQSDEKRLMVESMVQPILEKHEKIRGFVWQFQGIYELLLDNLMNEQWE 324
+ P+ + + +D + + + W + L +L + +WE
Sbjct: 284 GAAIEEPEKKKLKSTDRQEIFYSLNAAVPDATGTWVDAVSWPLENFCSRLFIDLFHAKWE 343
Query: 325 IRHGAALGLRELMKKHAPSVGRLSGKSKQDNDSRNYCSLEDLATRLLTIFALDRFSDFVN 384
+RHGAA LREL+ +HA G+ ++++ D + LED A RLL + LDRF DFV+
Sbjct: 344 VRHGAATALRELINQHAQGAGKAVLQTREQMDEAHSRWLEDAALRLLCVLCLDRFGDFVS 403
Query: 385 DTAVAPVRESAAQTLATLLIHLDDEIALKVFQKLEQLVLQDPGLTGSPNKIWQATHGGLL 444
D VAPVRE+ AQ L TL+ ++ A KV Q++ ++LQ L N+ W HGGLL
Sbjct: 404 DQVVAPVRETCAQVLGTLVKEME---ASKV-QRIVNILLQ---LIQHKNE-WDVRHGGLL 455
Query: 445 GIRYFVSIKTDFLFKHXXXXXXXXXXXYGLKESDDDVQSVSAAILSPITDDFVKLQTDT- 503
G++Y ++ + L GL ++ DDV +V+AA L P++ KL
Sbjct: 456 GLKYVFVVREELL--PIYLPQSISNILIGLLDAVDDVGAVAAATLIPVSSWLPKLLNPAQ 513
Query: 504 IDLVLTTVWNSLTHXXXXXXXXXXXXXXXXAKLCKHEQVLAVLKQKSIDSPSEW----SF 559
+ ++ +W+ L A LC + + + W
Sbjct: 514 VSSIVKMLWDLLLDQDELTSACNSFMGLLAAILC-------------LPNAARWVEMEPM 560
Query: 560 KSLVPQLYPFLRHSITMVRKSVLNLLSAFLS 590
LVP+L+PFL HS + VR+S L L S
Sbjct: 561 AILVPRLWPFLSHSTSSVRRSTLKTLMTLTS 591
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 380 bits (976), Expect = e-104
Identities = 289/1005 (28%), Positives = 471/1005 (46%), Gaps = 96/1005 (9%)
Query: 888 FSLLPNAQKILAQKPLEDARYR-VSLAIESAKESERERQLEVLSSYASAVMLIDGLPNKL 946
+S++ K Q+ D+RY + +IE+AK + + + + + +S + P KL
Sbjct: 597 YSIVRPNLKTEKQRESIDSRYNTLCRSIENAKMNIKSNGIRINALLSSTLFYFGNAPEKL 656
Query: 947 NPLIRSLMDNVKSEKHTILQQTSGDSIVNLISELVSAQKHNVANKIVKNLCGFICVDTSE 1006
P IR +++ +++E++ + V L+ ++ K+
Sbjct: 657 TPQIRPIVETMQTEENDAMASEVFRGAVPLLVMFSWSRNPRPYVKVFAKAFESFSGCPIR 716
Query: 1007 VPEFDGTNTTVI----TTLVKEAASLSLQEDSEMKKMTESARIKRKGGMHTLMKLLIKFQ 1062
+P+ ++ + TT++ + D ++ + + +
Sbjct: 717 MPKLGASSPGALEPWTTTIISMRRIWGKETDDGFEESSGMISAESRNA------------ 764
Query: 1063 EKTLEVVPQLKKSLFEPLEKIDILSSNGDETTFKKTGQEIVDAFGIIRALFTYMPESVQD 1122
E L ++ Q S LS + D TF + + +L+ + + D
Sbjct: 765 ELFLNILCQFNASQLAEFYCHFDLSEDVDLNTF-------LTRLELHNSLWNRVGSRLSD 817
Query: 1123 E---EVLSRLPVFRDFLRSNVSVIRYSAARTLSELACHKPVVLMSYVITDILPMLNNAGS 1179
+ ++ S +P S IRY+ A+ + +S ++ + + +
Sbjct: 818 QSADKIFSLVP-------SEDPAIRYAFAKAIETFFKSSCGDTLSKCYNRLVVLSKDLDN 870
Query: 1180 VTDRQGVVELLYHLSIQLESDILPYVVFLIVPLLGRMSDSNEDIRKLATTTFASIIKLVP 1239
V R VE+ L + + + L + ++D E +R A F +I ++
Sbjct: 871 VNSRLSAVEVFLRLCMMDTRYLNGWATLLAPVIFPLLADQCETVRDAAGEAFRRLIPVIT 930
Query: 1240 LEAGIAAPVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKAT---------LRKY 1290
LE + G+S+ELL + + +FI + PS LP I+A LR+Y
Sbjct: 931 LENPDFSIEGMSQELLAKKSEYSNFINVLGSPSS-----LPRVIRADIRGGFDTSMLREY 985
Query: 1291 QQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXX 1350
Q +G+ W+ FL Y LHGIL DDMGLGKTLQT+C IA L + + ++ +
Sbjct: 986 QLEGITWIRFLRTYGLHGILADDMGLGKTLQTMCSIA----LSVDRDEMSEFHRCSLIVC 1041
Query: 1351 XXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVD 1410
W + F Q P L G A+I V +YD +
Sbjct: 1042 PRTLVDHWCLEWNRFFPQRVPASKNLTRCHG-------------AEICVIAYDELKTA-- 1086
Query: 1411 FLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLM 1470
++ +NY VLDEGH+++NS+ + K + RL+L+GTP+QN+ +LWSLF +LM
Sbjct: 1087 YMMDRVWNYIVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFAWLM 1146
Query: 1471 PGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSD 1530
PG+LG+EK F+ +F K I R K + HK VLPF++RRLK EVL +
Sbjct: 1147 PGYLGSEKQFRSQFLKKIMKCRLPKANEADLKAGSAAISQLHKLVLPFVMRRLKTEVLKE 1206
Query: 1531 LPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCN 1590
LP K +QDY CEL++ QK++Y FV + ++D+ ++ V L +RKL +
Sbjct: 1207 LPEKNVQDYECELTEDQKEIYR-FVVDRCTSSQEDVGLSSLV--------TLITLRKLTD 1257
Query: 1591 HPSLVLNS----SHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKK 1646
H LV ++ PQ+ ++ +++G K+EALK LL+EC I E+
Sbjct: 1258 HTKLVHDTLAKIGAPQYILSKALAAKSG----------KMEALKQLLIECEICKNPDEEV 1307
Query: 1647 SNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSV-TFMRLDGSVDSRDRQKVV 1705
V S HR LIFCQ K +V + L SV + + LDGSV + DR K+V
Sbjct: 1308 EQPEDLGGLVASGHRALIFCQWKTSAKLVSDALKSGEFGSVVSHLVLDGSVPAGDRMKMV 1367
Query: 1706 RKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVN 1765
+FNED +ID ADTVIF++HDWNPM DLQA+DRAHRLGQ + VN
Sbjct: 1368 NRFNEDKTIDVLILTTHVGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVN 1427
Query: 1766 VYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDADNIPSQXXXX 1825
VYR+IT+GT+EEK+M L KFK+N A ++ N + +M T +L+++F D ++
Sbjct: 1428 VYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTMETGELMNMFTLDGDEAKKKPG 1487
Query: 1826 XXXXXXXXANESGLTGKAKEAVGELKELWDSSQYEEEYNLDNFIK 1870
+ +S TG +E +L +WD SQY +++ +D+F++
Sbjct: 1488 GGEPAAKKSKKS--TGAPEEV--DLASMWDESQY-DDFQVDSFLR 1527
Score = 59.3 bits (142), Expect = 6e-08
Identities = 55/215 (25%), Positives = 97/215 (44%), Gaps = 25/215 (11%)
Query: 306 QFQGIYELLLDNLMNEQWEIRHGAALGLRELMKKHAPSVGRLSGKSKQDNDSRNYCSLED 365
+F + L++ + +QW RHG A+ + ++ + S RLS Y ++
Sbjct: 75 KFLKVLRELVNLVAEKQWYARHGGAIAICQIA---STSYDRLS-----------YELIDT 120
Query: 366 LATRLLTIFALDRFSDFVND-TAVAPVRESAAQTLATLLIHLDDEIALKVFQKLEQLVLQ 424
+ L+ + LD+F+DF++ A APVRE AQ L +L + D++ V + + Q+V +
Sbjct: 121 ILYLLIHVLILDKFNDFISGRNATAPVREQCAQALVHMLRNTDEKRREVVLEIVVQMV-R 179
Query: 425 DPGLTGSPNKIWQATHGGLLGIRYFVSI-KTDFLFKHXXXXXXXXXXXYGLKESDDDVQS 483
PG K W GLL ++Y+ +I + D L +S DDV
Sbjct: 180 TPG-----EKNWNIRQSGLLILKYYFAIARNDGTEHQKTFNQCFNLVIQSLDDSVDDVTG 234
Query: 484 VSAAILSPITDDFVKLQ---TDTIDLVLTTVWNSL 515
+ L+ I + Q + ++ V++ VW L
Sbjct: 235 CAVKTLASILSNKEIPQEEMSQLVEKVMSHVWKLL 269
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 316 bits (810), Expect = 2e-85
Identities = 207/608 (34%), Positives = 325/608 (53%), Gaps = 83/608 (13%)
Query: 1209 IVPLLGRMSDSNEDIRKLATTTFASIIKLVPLEAGIAAPVGLSEELLRGREKERDFIQQM 1268
+ PLL +S + + R+ ++ + +I + G + +S++LL E+E+ ++ +
Sbjct: 725 VKPLLRNISGNID--REASSKVLSKVIPTL----GFSTNTKISKDLLEMIEREKKSLESL 778
Query: 1269 MDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIAS 1328
+D K + + I LR YQ +GV WL FL + L+GIL DDMGLGKTLQ + + S
Sbjct: 779 LDAGKIPEYHIKCPISVKLRDYQMEGVKWLNFLYSFSLNGILADDMGLGKTLQVLTFLCS 838
Query: 1329 DQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPL 1388
+ Y KT + TGHW+ E +++ P + +Y
Sbjct: 839 EIY-------KTNRK------VLVICPSSLTGHWKSEVKKFFPFVAAEIYK--------- 876
Query: 1389 QGQVPTADIVVTSYDVARND-VDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHR 1447
+ T I+++SY+ RND ++F++K D+ Y V+DEGH+++N Q+ L + +I + +
Sbjct: 877 REDRDTYSILISSYETFRNDYLNFIEK-DWFYVVVDEGHVLRNKQTILYSRMNMIRCSRK 935
Query: 1448 LVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXX 1507
+VLTGTP+ N+V +L SLF+FLMP ++G EK + S N K S
Sbjct: 936 MVLTGTPVHNSVEDLISLFNFLMPNYIGPEKEY---------GSLNVKMSDSEIEKTHKR 986
Query: 1508 XXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKK--QKNVVEKD 1565
H++VLPF+LRRLK +VL DLPPKII+D EL +Q++LY + +K ++++ + +
Sbjct: 987 LDLLHRKVLPFILRRLKIDVLKDLPPKIIRDITVELGPVQEKLYREIDEKGGKESLGDAE 1046
Query: 1566 IENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPK 1625
+E +V+ K F+ + L L SH + + T + K
Sbjct: 1047 LEY-GKVDQKNVGFKRTR---------DLFLAVSH-----IGHFKDSTEVSC-------K 1084
Query: 1626 LEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLP 1685
++AL+ ++ CG +D+ K +LIF Q K +D+V D++KK+
Sbjct: 1085 VKALEDIISLCGG--EDLGSK---------------ILIFFQFKSTIDLVIKDIMKKY-- 1125
Query: 1686 SVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNP 1745
+ RLDGSV S R K+ +FN + ADTV+ EHDWNP
Sbjct: 1126 KFKYSRLDGSVPSAARTKIAEEFNTGTT-QMLFLTTQVGGLGLNLTGADTVVMYEHDWNP 1184
Query: 1746 MNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMN 1805
NDLQAMDRAHR+GQK+ VNV+R I + TLEEK+M LQ FKM +A+++V+QQNA + +M+
Sbjct: 1185 FNDLQAMDRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVANSLVSQQNADIETMD 1244
Query: 1806 THQLLDLF 1813
T LL+ F
Sbjct: 1245 TKDLLERF 1252
Score = 67.4 bits (163), Expect = 2e-10
Identities = 80/325 (24%), Positives = 134/325 (40%), Gaps = 78/325 (24%)
Query: 311 YELLLDNLMNEQWEIRHGAALGLRELMKKHAPSVGRLSGKSKQDNDSRNYCSLED-LATR 369
+E + DNL++ +W RHGA L + S+ DN ++ L ++
Sbjct: 154 FEQISDNLLSYEWYKRHGAFLAFAAMF-------------SEIDNGGDIQIRVDSKLFSK 200
Query: 370 LLTIFALDRFSDFVNDTAVAPVRESAAQTLATL--LIHLDDEIALKVFQKLEQLVLQDPG 427
+ I D+F+DFV+D VAPVR++AA L+ + LI +D I EQLV G
Sbjct: 201 IYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGPNDII--------EQLV----G 248
Query: 428 LTGSPNKIWQATHGGLLGIRY---FVSIKTDFLFKHXXXXXXXXXXXYGLKESDDDVQSV 484
S + WQ GL+ + Y FV K K L D+D++ +
Sbjct: 249 FLDSGD--WQVQFSGLIALGYLKEFVEDKDGLCRKLVSL----------LSSPDEDIKLL 296
Query: 485 SAAILS--PITDDFVKLQTDTIDLVLTTVWNSLTHXXXXXXXXXXXXXXXXAKLCKHEQV 542
SA +L PI TD++DLVL W ++ K+ +
Sbjct: 297 SAELLCHFPI--------TDSLDLVLEKCWKNI-ESEELISVSKTSNLSLLTKIYRENPE 347
Query: 543 LAVLKQKSIDSPSEWSFKSLVPQLYPFLRHSITMVRKSVLNLLSAFLSLNDSATKNWING 602
L++ ++ D ++P + VR S+LN++ KN
Sbjct: 348 LSIPPERLKD-------------IFPCFTSPVPEVRTSILNMV-----------KNLSEE 383
Query: 603 KLFKLIYQNILLEQNVEVLDLSCKL 627
+ L+ + +L+E+ E+ +++ KL
Sbjct: 384 SIDFLVAEVVLIEEKDEIREMAIKL 408
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 272 bits (696), Expect = 3e-72
Identities = 179/543 (32%), Positives = 277/543 (50%), Gaps = 50/543 (9%)
Query: 1259 EKERDFIQQMMDPSKAKPFKLP-VAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLG 1317
E+E+ ++ K K K P + + TL++YQ G+ W+ L HL+GIL D+MGLG
Sbjct: 441 EREKTDYYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLG 500
Query: 1318 KTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLV 1377
KT+Q+I +I YL K +W EF++++P+LN ++
Sbjct: 501 KTIQSISLIT---YL--------YEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTII 549
Query: 1378 YAGGPSVRYPLQGQVPTA--DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKL 1435
Y G P+ R+ LQ Q+ D+++T+Y+ D L K+D+ + ++DEGH +KN+QSKL
Sbjct: 550 YKGTPNQRHSLQHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKL 609
Query: 1436 AKAVK-LINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNS 1494
+ + + +RL+LTGTP+QNN+ ELW+L +F++P + K F++ F P A++
Sbjct: 610 SFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQ 669
Query: 1495 KTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDF 1554
+ HK + PF+LRRLK+EV DLP K+ + C+LS LQ+QLY
Sbjct: 670 EKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQM 729
Query: 1555 VKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYL--SQ 1612
+K V E + K + + +RK+CNHP + F +V+ + S+
Sbjct: 730 LKHNALFVGAGTEGATKGGIK-GLNNKIMQLRKICNHPFV--------FDEVEGVVNPSR 780
Query: 1613 TGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDML 1672
DL A K E L +L P S HRVL+F Q+ ++
Sbjct: 781 GNSDLL-FRVAGKFELLDRVL-----------------PKFK--ASGHRVLMFFQMTQVM 820
Query: 1673 DMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFN-EDPSIDCXXXXXXXXXXXXXXX 1731
D++E+ L K L +MRLDGS + +R +++ FN D C
Sbjct: 821 DIMEDFLRMKDL---KYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQ 877
Query: 1732 XADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAS 1791
ADTVI + DWNP DLQA DRAHR+GQK V + R+IT ++EE I+ K++I
Sbjct: 878 TADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDG 937
Query: 1792 TIV 1794
++
Sbjct: 938 KVI 940
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 261 bits (668), Expect = 6e-69
Identities = 164/520 (31%), Positives = 267/520 (50%), Gaps = 51/520 (9%)
Query: 1281 VAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKT 1340
+ + L++YQ G+ W+ L HL+GIL D+MGLGKT+QTI +I
Sbjct: 411 ILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITH------------ 458
Query: 1341 QSEKTRXXXXXXXXXXXXT-GHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD--I 1397
EK R T +W EF++++P++ +VY G P VR L QV ++ +
Sbjct: 459 LIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQV 518
Query: 1398 VVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLI-NSNHRLVLTGTPIQ 1456
++T+Y+ D L + + Y ++DEGH +KN+QSKL + +S +RL+LTGTP+Q
Sbjct: 519 LLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQ 578
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
NN+ ELW+L +F++P + K F E F P A++ HK +
Sbjct: 579 NNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLR 638
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRRLK++V ++LP K+ + C++S LQ++LY K VE ++ Q
Sbjct: 639 PFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQ 698
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAP-KLEALKTLLLE 1635
+ + ++K+CNHP + F+ V+ + TG + + K E L +L
Sbjct: 699 N---TVMQLKKICNHPFV--------FEDVERSIDPTGFNYDMLWRVSGKFELLDRIL-- 745
Query: 1636 CGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGS 1695
P + S HR+L+F Q+ +++++E+ L H ++RLDGS
Sbjct: 746 ---------------PKLFR--SGHRILMFFQMTQIMNIMEDYL---HYRQWRYLRLDGS 785
Query: 1696 VDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDR 1754
+ DR K++ FN+ + ++ ADTVI + DWNP DLQA DR
Sbjct: 786 TKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDR 845
Query: 1755 AHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
AHR+GQ K V +YR+IT+ ++EE I+ ++K++I ++
Sbjct: 846 AHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVI 885
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 252 bits (644), Expect = 3e-66
Identities = 165/544 (30%), Positives = 271/544 (49%), Gaps = 51/544 (9%)
Query: 1281 VAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKT 1340
+ + TL+ YQ G+ W+ L HL+GIL D+MGLGKT+QTI ++ YL
Sbjct: 761 ILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLT---YL-------- 809
Query: 1341 QSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIV 1398
K +W EF +++PTL + + G P+ R Q ++ D+V
Sbjct: 810 YEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVV 869
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKL-INSNHRLVLTGTPIQN 1457
+T+++ + L K + + ++DEGH +KN+QSKL+ + ++++RL+LTGTP+QN
Sbjct: 870 LTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQN 929
Query: 1458 NVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
N+ ELW+L +F++P + K F E F P A++ HK + P
Sbjct: 930 NLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRP 989
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
F+LRRLK++V +LP K+ + C++S LQ+ +Y +K ++ + +N ++ +
Sbjct: 990 FLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGD--QNNKKMVGLRG 1047
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGH-APKLEALKTLLLEC 1636
+ ++K+CNHP + F++V+ ++ T DI A K E L +L
Sbjct: 1048 FNNQIMQLKKICNHPFV--------FEEVEDQINPTRETNDDIWRVAGKFELLDRIL--- 1096
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSV 1696
P + + HRVLIF Q+ ++D++E+ L ++ ++RLDG
Sbjct: 1097 --------------PKLK--ATGHRVLIFFQMTQIMDIMEDFL---RYINIKYLRLDGHT 1137
Query: 1697 DSRDRQKVVRKFNE-DPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRA 1755
S +R +++R FN D C ADTVI + DWNP DLQA DRA
Sbjct: 1138 KSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRA 1197
Query: 1756 HRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQ---LLDL 1812
HR+GQK V + R+IT ++EE I+ K++I ++ S + Q L L
Sbjct: 1198 HRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSL 1257
Query: 1813 FDAD 1816
DA+
Sbjct: 1258 LDAE 1261
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 251 bits (640), Expect = 1e-65
Identities = 175/546 (32%), Positives = 275/546 (50%), Gaps = 75/546 (13%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR YQ G+NWL L++ L GIL D+MGLGKTLQTI + +Y++ +
Sbjct: 184 LRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIE---------- 233
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQV---PTADIVVTSYD 1403
+W +EF +++P +NVLV G R + + D+++TSY+
Sbjct: 234 -GPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYE 292
Query: 1404 VARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELW 1463
+ + + LK+ + Y V+DE H IKN QS L++ ++L S +RL++TGTP+QNN+ ELW
Sbjct: 293 MVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELW 352
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRL 1523
+L +FL+P G ++F E F NS+ + H + PF+LRR+
Sbjct: 353 ALLNFLLPDIFGDSELFDEWF-----EQNNSEQDQE------IVIQQLHSVLNPFLLRRV 401
Query: 1524 KEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIE----NTAEVENKQHIF 1579
K +V L PKI + Y ++D+Q Q Y K+++EKDI+ + E K +
Sbjct: 402 KADVEKSLLPKIETNVYVGMTDMQIQWY-------KSLLEKDIDAVNGAVGKREGKTRLL 454
Query: 1580 QALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIG 1639
+ +RK CNHP L F+ + T D H I ++ K+ L LL
Sbjct: 455 NIVMQLRKCCNHPYL--------FEGAEPGPPYT-TDEHLIFNSGKMIILDKLL------ 499
Query: 1640 IQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSR 1699
+ +++K + RVLIF Q+ +LD++E+ + + R+DGS
Sbjct: 500 -KRLKEKGS------------RVLIFSQMSRLLDILEDYC---YFRDFEYCRIDGSTSHE 543
Query: 1700 DRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRL 1758
+R + + ++N+ S ADTVI + DWNP DLQAMDRAHR+
Sbjct: 544 ERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRI 603
Query: 1759 GQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ----QNAGLGSMNTHQLLDL-- 1812
GQKK V+VYR +T+ +EEK++ K+ + ++ Q + A LG+ + LLD+
Sbjct: 604 GQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGN-SKDDLLDMIQ 662
Query: 1813 FDADNI 1818
F A N+
Sbjct: 663 FGAKNM 668
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 249 bits (635), Expect = 4e-65
Identities = 160/524 (30%), Positives = 261/524 (49%), Gaps = 53/524 (10%)
Query: 1281 VAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKT 1340
+ + TL++YQ G+ WL L +L+GIL D+MGLGKT+QTI ++ YL D KK
Sbjct: 767 IMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVT---YLM--DRKKV 821
Query: 1341 QSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIV 1398
+W EF++++P + V+ Y G P R LQ Q+ +++
Sbjct: 822 MGP------YLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVL 875
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKL-INSNHRLVLTGTPIQN 1457
+T+Y+ D L K + Y ++DEGH +KN KL + + + +RL+LTGTP+QN
Sbjct: 876 LTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQN 935
Query: 1458 NVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
+ ELW+L +FL+P + F++ F P A++ ++ HK + P
Sbjct: 936 KLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRL--HKVLRP 993
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
F+LRRLK+EV LP K+ C++S LQ+ LY K + + + +
Sbjct: 994 FLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKA 1053
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQS-YLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ + +RKLCNHP + FQ ++ Y TG H + P
Sbjct: 1054 LMNTIVQLRKLCNHPFM--------FQHIEEKYCDHTGG--HGVVSGP------------ 1091
Query: 1637 GIGIQDVEKKSNKNPSIDNVI-----SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMR 1691
D+ + S K +D ++ + HRVL+FCQ+ + ++E+ L + ++R
Sbjct: 1092 -----DLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFG---YLR 1143
Query: 1692 LDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
LDG+ + DR +++RKFN S + ADTV+ + DWNP DLQ
Sbjct: 1144 LDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQ 1203
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
A DRAHR+GQ+ V V R++T ++EE+I+ ++K+N+ ++
Sbjct: 1204 AQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVI 1247
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 243 bits (620), Expect = 2e-63
Identities = 172/556 (30%), Positives = 263/556 (46%), Gaps = 57/556 (10%)
Query: 1277 FKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSED 1336
FK+P + L KYQQ GV WL L+ GIL D+MGLGKT+Q I +A Y +
Sbjct: 497 FKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI-- 554
Query: 1337 YKKTQSEKTRXXXXXXXXXXXXTG---HWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVP 1393
+T+ R T W +EF + P V + S + + +
Sbjct: 555 --RTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIR 612
Query: 1394 TA----DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLV 1449
I++TSY R D + +YD++Y +LDEGH I+N + + A K + HR++
Sbjct: 613 DVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 672
Query: 1450 LTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXX 1509
L+G+P+QNN+ ELWSLFDF+ PG LGT +F E+F+ PI S S
Sbjct: 673 LSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCAC 732
Query: 1510 XXHKQVLPFMLRRLKEEVLS--DLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIE 1567
+ P++LRR+K +V LP K Q +C L+D Q ++Y +FV + E
Sbjct: 733 VLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSK--------E 784
Query: 1568 NTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLE 1627
+ + IF L +RK+CNHP L S P+ + L ++ G+
Sbjct: 785 VYRILNGEMQIFSGLIALRKICNHPDLF--SGGPKNLK---GLPDDELEEDQFGY----- 834
Query: 1628 ALKTLLLECGIGIQDVEKKSNKNPSIDNVI-----SQHRVLIFCQLKDMLDMVENDLLKK 1682
K+S K +++++ RVL+F Q + MLD++E L
Sbjct: 835 ----------------WKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFL--- 875
Query: 1683 HLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHD 1742
T++++DG+ RQ ++ ++NED SI A+ V+ + D
Sbjct: 876 RAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPD 935
Query: 1743 WNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN--QQNAG 1800
WNP D QA +RA R+GQKK V VYR++T GT+EEKI Q FK + + ++ +Q
Sbjct: 936 WNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRF 995
Query: 1801 LGSMNTHQLLDLFDAD 1816
S + ++L L D
Sbjct: 996 FKSNDLYELFTLTSPD 1011
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 243 bits (619), Expect = 3e-63
Identities = 156/524 (29%), Positives = 263/524 (49%), Gaps = 56/524 (10%)
Query: 1283 IKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQS 1342
I TL+ YQ G+ W+ L +L+GIL D+MGLGKT+QTI +I YL
Sbjct: 716 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALIT---YL--------ME 764
Query: 1343 EKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIVVT 1400
K +W EF +++P++ + Y G P++R L Q+ + ++++T
Sbjct: 765 HKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLT 824
Query: 1401 SYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNH----RLVLTGTPIQ 1456
+Y+ D L K + Y ++DEGH +KN KL + ++N+++ R++LTGTP+Q
Sbjct: 825 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQ---VLNTHYVAPRRILLTGTPLQ 881
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
N + ELW+L +FL+P + F++ F P A + ++ HK +
Sbjct: 882 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRL--HKVLR 939
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRRLK+EV S LP K+ C++S LQK LY K + + ++ +
Sbjct: 940 PFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK 999
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ + +RK+CNHP + FQ ++ ++ +G++ +
Sbjct: 1000 TLMNTIMQLRKICNHPYM--------FQHIEESFAE------HLGYSNGV---------- 1035
Query: 1637 GIGIQDVEKKSNKNPSIDNVI-----SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMR 1691
I ++ + S K +D ++ + HRVL+FCQ+ ++ ++E+ ++ ++R
Sbjct: 1036 -INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF---LYLR 1091
Query: 1692 LDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
LDG+ S DR +++KFNE S ADTV+ + DWNP DLQ
Sbjct: 1092 LDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1151
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
A DRAHR+GQ+ V V R+ T ++EEKI+ K+K+N+ ++
Sbjct: 1152 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1195
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 243 bits (619), Expect = 3e-63
Identities = 156/524 (29%), Positives = 263/524 (49%), Gaps = 56/524 (10%)
Query: 1283 IKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQS 1342
I TL+ YQ G+ W+ L +L+GIL D+MGLGKT+QTI +I YL
Sbjct: 716 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALIT---YL--------ME 764
Query: 1343 EKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIVVT 1400
K +W EF +++P++ + Y G P++R L Q+ + ++++T
Sbjct: 765 HKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLT 824
Query: 1401 SYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNH----RLVLTGTPIQ 1456
+Y+ D L K + Y ++DEGH +KN KL + ++N+++ R++LTGTP+Q
Sbjct: 825 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQ---VLNTHYVAPRRILLTGTPLQ 881
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
N + ELW+L +FL+P + F++ F P A + ++ HK +
Sbjct: 882 NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRL--HKVLR 939
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRRLK+EV S LP K+ C++S LQK LY K + + ++ +
Sbjct: 940 PFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAK 999
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ + +RK+CNHP + FQ ++ ++ +G++ +
Sbjct: 1000 TLMNTIMQLRKICNHPYM--------FQHIEESFAE------HLGYSNGV---------- 1035
Query: 1637 GIGIQDVEKKSNKNPSIDNVI-----SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMR 1691
I ++ + S K +D ++ + HRVL+FCQ+ ++ ++E+ ++ ++R
Sbjct: 1036 -INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNF---LYLR 1091
Query: 1692 LDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
LDG+ S DR +++KFNE S ADTV+ + DWNP DLQ
Sbjct: 1092 LDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ 1151
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
A DRAHR+GQ+ V V R+ T ++EEKI+ K+K+N+ ++
Sbjct: 1152 AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1195
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 243 bits (619), Expect = 3e-63
Identities = 164/515 (31%), Positives = 247/515 (47%), Gaps = 65/515 (12%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
+R YQ G+NWLA L ++GIL D+MGLGKTLQTI +I ++ K +
Sbjct: 94 MRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHY-----------KNK 142
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQV---PTADIVVTSYD 1403
+W EF+++ P++N +V G + R + V D+ T+Y+
Sbjct: 143 ASPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYE 202
Query: 1404 VARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELW 1463
+ LKK ++ Y ++DE H IKN +SKL++ V+ +NS +RL++TGTP+QNN+ ELW
Sbjct: 203 MMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELW 262
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRL 1523
+L +FL+P + F F+ S HK + PF+LRR+
Sbjct: 263 ALLNFLLPDIFTSSDDFDSWFSNDAMSGNTDLVQ------------RLHKVLQPFLLRRI 310
Query: 1524 KEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQ 1583
K +V L PK Y LS +Q++ Y + K + DI N A K + L
Sbjct: 311 KSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMK-----DIDIINGAGKVEKARLMNILM 365
Query: 1584 YMRKLCNHPSLVLNSS-HPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQD 1642
++RK NHP L + P F D H + ++ K+ L LL+
Sbjct: 366 HLRKCVNHPYLFDGAEPGPPFT----------TDQHLVDNSGKMVVLDKLLM-------- 407
Query: 1643 VEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQ 1702
K + S RVLIF Q MLD++E+ +H + RLDGS DR
Sbjct: 408 ---KFKEQGS--------RVLIFSQFSRMLDLLEDFCWWRH---YEYCRLDGSTPHEDRS 453
Query: 1703 KVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQK 1761
+ +N D AD VI + DWNP +DLQAMDRAHR+GQK
Sbjct: 454 NAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQK 513
Query: 1762 KVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
K V V+R+IT+ T++E+I+ + K+ + + ++ Q
Sbjct: 514 KQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQ 548
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 241 bits (614), Expect = 1e-62
Identities = 165/521 (31%), Positives = 254/521 (48%), Gaps = 65/521 (12%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P I+ +R YQ G+NWL L + ++GIL D+MGLGKTLQTI ++A YL +Y+
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLA---YLH--EYRG 236
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA---D 1396
G+W E +++ P L + + G P R ++ + A D
Sbjct: 237 INGPHM------VVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFD 290
Query: 1397 IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
I VTS+++A + L+++ + Y ++DE H IKN S L+K ++L ++N+RL++TGTP+Q
Sbjct: 291 ICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQ 350
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
NN+ ELW+L +FL+P + + F E F S N + HK +
Sbjct: 351 NNLHELWALLNFLLPEIFSSAETFDEWFQ---ISGENDQQE---------VVQQLHKVLR 398
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRRLK +V LPPK +S +QKQ Y K +++KD+E ++
Sbjct: 399 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY-------KALLQKDLEAVNAGGERK 451
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ +RK CNHP L FQ + T D H I +A K+ L LL
Sbjct: 452 RLLNIAMQLRKCCNHPYL--------FQGAEPGPPYTTGD-HLITNAGKMVLLDKLL--- 499
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSV 1696
P + RVLIF Q+ +LD++E+ L+ + + R+DG+
Sbjct: 500 --------------PKLKE--RDSRVLIFSQMTRLLDILEDYLMYR---GYLYCRIDGNT 540
Query: 1697 DSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRA 1755
+R + +N+ S AD VI + DWNP DLQA DRA
Sbjct: 541 GGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRA 600
Query: 1756 HRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
HR+GQKK V V+R T+ +EEK++ K+ + + ++ Q
Sbjct: 601 HRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQ 641
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 240 bits (613), Expect = 1e-62
Identities = 168/538 (31%), Positives = 264/538 (48%), Gaps = 66/538 (12%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P I+ LR YQ G+NWL L + ++GIL D+MGLGKTLQTI ++A YL +Y+
Sbjct: 174 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLA---YLH--EYRG 228
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA---D 1396
G+W E +++ P L + + G P R ++ ++ A D
Sbjct: 229 INGPHM------VVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFD 282
Query: 1397 IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
I VTS+++A + L+++ + Y ++DE H IKN S L+K ++L ++N+RL++TGTP+Q
Sbjct: 283 ICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQ 342
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
NN+ ELW+L +FL+P + + F E F S N + HK +
Sbjct: 343 NNLHELWALLNFLLPEVFSSAETFDEWFQ---ISGENDQQE---------VVQQLHKVLR 390
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRRLK +V LPPK +S +QKQ Y K +++KD+E ++
Sbjct: 391 PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY-------KALLQKDLEVVNGGGERK 443
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ +RK CNHP L FQ + T D H + +A K+ L LL
Sbjct: 444 RLLNIAMQLRKCCNHPYL--------FQGAEPGPPYTTGD-HLVTNAGKMVLLDKLL--- 491
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSV 1696
P + + RVLIF Q+ +LD++E+ L+ + + R+DG+
Sbjct: 492 --------------PKLKD--RDSRVLIFSQMTRLLDILEDYLMYR---GYQYCRIDGNT 532
Query: 1697 DSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRA 1755
+R + +N+ S AD VI + DWNP DLQA DRA
Sbjct: 533 GGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRA 592
Query: 1756 HRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ-QNAGLGSMNTHQLLDL 1812
HR+GQKK V V+R T+ +E K++ K+ + + ++ Q + A ++N +LL +
Sbjct: 593 HRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQM 650
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 240 bits (612), Expect = 2e-62
Identities = 161/530 (30%), Positives = 250/530 (46%), Gaps = 68/530 (12%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P + LR YQ GVNWL L+K + GIL D+MGLGKTLQTI + +Y+
Sbjct: 189 PAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIP--- 245
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA---D 1396
+W +E +++P +N + G R L + D
Sbjct: 246 --------GPFLVIAPKSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFD 297
Query: 1397 IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
+V+ SY++ + LKK ++ Y ++DE H IKN +S L++ ++ S +RL++TGTP+Q
Sbjct: 298 VVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQ 357
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
NN+ ELW+L +FL+P + F + F+ K + H +
Sbjct: 358 NNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQ-----------LHTVLQ 406
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIE----NTAEV 1572
PF+LRR+K +V + L PK + Y +S +QK+ Y K ++EKD++ +
Sbjct: 407 PFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWY-------KKILEKDLDAVNGSNGSK 459
Query: 1573 ENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTL 1632
E+K + + +RK CNHP L F + T D H + +A KL+ L L
Sbjct: 460 ESKTRLLNIMMQLRKCCNHPYL--------FDGAEPGPPYT-TDEHLVYNAAKLQVLDKL 510
Query: 1633 LLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRL 1692
L KK + S RVLIF Q+ +LD++E+ + + + R+
Sbjct: 511 L-----------KKLKEEGS--------RVLIFSQMSRLLDILEDYC---YFRNYEYCRI 548
Query: 1693 DGSVDSRDRQKVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQA 1751
DGS DR + + +N D AD V+ + DWNP DLQA
Sbjct: 549 DGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQA 608
Query: 1752 MDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGL 1801
MDRAHR+GQKK V V+R++T ++EEKI+ K+ + ++ Q L
Sbjct: 609 MDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSL 658
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 239 bits (609), Expect = 4e-62
Identities = 178/579 (30%), Positives = 267/579 (45%), Gaps = 90/579 (15%)
Query: 1277 FKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSED 1336
F +P I+ L +YQ V WL L GI+ D+MGLGKT+Q + ++S + S
Sbjct: 267 FTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHH--SGK 324
Query: 1337 YKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLV-YAGGPSVRYPLQGQVPTA 1395
++K W EF + L V+V +A G R + + +
Sbjct: 325 FQKP---------ALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYES 375
Query: 1396 D--------------------------------------IVVTSYDVARNDVDFLKKYDY 1417
D I++T+Y R D + ++
Sbjct: 376 DASESEAEESKTSIKLRGASSSFHRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREW 435
Query: 1418 NYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTE 1477
YCVLDEGH I+N S+++ + K I + +R++L+GTPIQNN+ ELW+LFDF+ PG LGT
Sbjct: 436 GYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTL 495
Query: 1478 KMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQ 1537
+FQ +FA PI + S+ + P++LRR+K +V +DLP K Q
Sbjct: 496 PVFQNQFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADLPKKSEQ 555
Query: 1538 DYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLN 1597
+C+L+ LQ++ Y DF++ D++ + K+ + + +RK+CNHP LV
Sbjct: 556 VLFCKLTPLQRKAYQDFLQ------GSDMQKI--LNGKRQMLYGIDILRKICNHPDLVTR 607
Query: 1598 SSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVI 1657
+ L + + D + KL+ ++ LL + KK
Sbjct: 608 ---------EYLLHKEDYNYGDPEKSGKLKVIRALL--------TLWKKQG--------- 641
Query: 1658 SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCX 1717
HR L+F Q + MLD++E L K LP V + R+DGS RQ +V FN++ D
Sbjct: 642 --HRTLLFSQTRQMLDILEIGL--KDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVF 697
Query: 1718 XXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEE 1777
AD VI + DWNP D QA +RA RLGQKK V VYR++T GT+EE
Sbjct: 698 LLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEE 757
Query: 1778 KIMGLQKFKMNIASTIVN--QQNAGLGSMNTHQLLDLFD 1814
KI Q FK + + I+ +Q + H L L D
Sbjct: 758 KIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGD 796
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 239 bits (609), Expect = 4e-62
Identities = 160/515 (31%), Positives = 258/515 (50%), Gaps = 55/515 (10%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
L+ YQ G+ W+ L +L+GIL D+MGLGKT+QTI ++ YL K
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVT---YL--------MEVKQN 581
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIVVTSYDV 1404
+W+ EF +++P++ ++Y G R ++GQ+ ++++T+Y+
Sbjct: 582 NGPYLVIVPLSTLSNWQNEFAKWAPSVTTIIYKGTKDARRRVEGQIRKGAFNVLMTTYEY 641
Query: 1405 ARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVK-LINSNHRLVLTGTPIQNNVVELW 1463
+ L K + Y ++DEGH +KN KL + ++ HRL+LTGTP+QN + ELW
Sbjct: 642 VIKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELW 701
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRL 1523
+L +FL+P + F++ F P A++ ++ HK + PF+LRRL
Sbjct: 702 ALLNFLLPSIFSSCGTFEQWFNAPFATTGEKVELNQEETMLIIRRL--HKVLRPFLLRRL 759
Query: 1524 KEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVEN-KQHIFQAL 1582
K+EV S LP K C+ S LQK +Y ++K + A++ + + + +
Sbjct: 760 KKEVESQLPDKTEYVIKCDQSALQKVIYRH--------MQKGLLLDAKMSSGARSLMNTV 811
Query: 1583 QYMRKLCNHPSLVLN--SSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGI 1640
++RKLCNHP L N S + +V G DL + A KLE L +L
Sbjct: 812 VHLRKLCNHPFLFPNIEDSCRAYWKVNEV---NGTDLMRV--AGKLELLDRIL------- 859
Query: 1641 QDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRD 1700
P + + HR+L+F Q+ M+++ E+ L + T++RLDGS +
Sbjct: 860 ----------PKLK--ATGHRILMFFQMTSMMNIFEDFL---NFRRYTYLRLDGSTKPDE 904
Query: 1701 RQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLG 1759
R ++ +FN S + ADTVI + DWNP D+QA DRAHR+G
Sbjct: 905 RGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIG 964
Query: 1760 QKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
QKK V V R+IT ++EEKI+ ++K+N+ ++
Sbjct: 965 QKKEVRVLRLITANSVEEKILAAARYKLNVDEKVI 999
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 236 bits (601), Expect = 3e-61
Identities = 164/527 (31%), Positives = 250/527 (47%), Gaps = 78/527 (14%)
Query: 1286 TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
TLR YQ DG+NWL IL D+MGLGKT+QTIC + Y +
Sbjct: 527 TLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFL----------YSLFKIHHL 576
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQG---QVPTA-----DI 1397
T W++EF ++P +NV+ Y G R +Q Q ++ +
Sbjct: 577 YGPFLCVVPLSTMTA-WQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESSKRLKFNC 635
Query: 1398 VVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQN 1457
++T+Y++ D FL + ++DE H +KN S L K++K ++NHRL++TGTP+QN
Sbjct: 636 ILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQN 695
Query: 1458 NVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
++ ELW+L F+MP T + F+ + H+Q+ P
Sbjct: 696 SLKELWALLHFIMPDKFDTWENFEVQHGN----------------AEDKGYTRLHQQLEP 739
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
++LRR+K++V LP K+ Q E++ LQKQ Y + K + + K +
Sbjct: 740 YILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTST----- 794
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECG 1637
+ ++K CNH +L+ S Q EAL+TLL
Sbjct: 795 FLNIVIELKKCCNHAALIRPSEFELMGLQQD------------------EALQTLL---- 832
Query: 1638 IGIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRL 1692
K S K +D ++ + HRVLIF Q+ MLD++ + L K+H P F RL
Sbjct: 833 -------KGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFP---FQRL 882
Query: 1693 DGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQA 1751
DGS+ R++ + FN + S D C ADTVI + DWNP NDLQA
Sbjct: 883 DGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQA 942
Query: 1752 MDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
RAHR+GQK VN+YR++T ++EE+I+ K KM + ++ + +
Sbjct: 943 QARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQRMD 989
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 235 bits (599), Expect = 6e-61
Identities = 176/550 (32%), Positives = 257/550 (46%), Gaps = 72/550 (13%)
Query: 1252 EELLRGREKERDFIQQMMD-PSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGIL 1310
EELL K + + D PS K KL R YQ G+NWL L + ++GIL
Sbjct: 152 EELLTESSKATNVCTRFEDSPSYVKWGKL--------RDYQVRGLNWLISLYENGINGIL 203
Query: 1311 CDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYS 1370
D+MGLGKTLQTI ++ ++ R+ +W EF+++
Sbjct: 204 ADEMGLGKTLQTISLLGYMKHYRNIP-----------GPHMVLVPKSTLHNWMSEFKRWV 252
Query: 1371 PTLNVLVYAGGPSVRYPLQGQVPTA---DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHI 1427
PTL + G R V D+ VTSY++ + KK+++ Y V+DE H
Sbjct: 253 PTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHR 312
Query: 1428 IKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKP 1487
IKN +SKL++ V+ + +RL+LTGTP+QNN+ ELWSL +FL+P + F F
Sbjct: 313 IKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWF--- 369
Query: 1488 IASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQ 1547
+ N K H + PF+LRR+K +V LPPK Y LS +Q
Sbjct: 370 --DTNNCLGDQK-------LVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQ 420
Query: 1548 KQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQ 1607
++ Y + K + DI N+A +K + L +RK CNHP L F +
Sbjct: 421 REWYTRILMK-----DIDILNSAGKMDKMRLLNILMQLRKCCNHPYL--------FDGAE 467
Query: 1608 SYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQ 1667
T D+H + ++ K+ L LL P + S RVLIF Q
Sbjct: 468 PGPPYT-TDMHLVTNSGKMVVLDKLL-----------------PKLKEQGS--RVLIFSQ 507
Query: 1668 LKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXX 1726
+ +LD++E+ + + + + RLDG +RQ + +NE S
Sbjct: 508 MTRVLDILEDYCMWR---NYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGL 564
Query: 1727 XXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFK 1786
AD VI + DWNP DLQAMDRAHR+GQ K V V+R IT T+EE+I+ + K
Sbjct: 565 GINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMK 624
Query: 1787 MNIASTIVNQ 1796
+ + S ++ Q
Sbjct: 625 LRLDSIVIQQ 634
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 234 bits (598), Expect = 8e-61
Identities = 159/561 (28%), Positives = 274/561 (48%), Gaps = 65/561 (11%)
Query: 1249 GLSEELLRGREKE---RDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYH 1305
G+S+ L RG + + + +D A + + L++YQ G+ WL L +
Sbjct: 719 GVSQALARGLQSYYAVAHAVTERVDKQSA------LMVNGVLKQYQIKGLEWLVSLYNNN 772
Query: 1306 LHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQE 1365
L+GIL D+MGLGKT+QTI +I YL ++K+ +W E
Sbjct: 773 LNGILADEMGLGKTIQTIALIT---YLM--EHKRINGP------FLIIVPLSTLSNWAYE 821
Query: 1366 FQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIVVTSYDVARNDVDFLKKYDYNYCVLD 1423
F +++P++ + Y G P+ R Q+ + ++++T+Y+ D L K + Y ++D
Sbjct: 822 FDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVD 881
Query: 1424 EGHIIKNSQSKLAKAVKLINSNH----RLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKM 1479
EGH +KN KL + ++N+++ RL+LTGTP+QN + ELW+L +FL+P +
Sbjct: 882 EGHRMKNHHCKLTQ---VLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCST 938
Query: 1480 FQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDY 1539
F++ F P A + ++ HK + PF+LRRLK+EV + LP K+
Sbjct: 939 FEQWFNAPFAMTGEKVDLNEEETILIIRRL--HKVLRPFLLRRLKKEVEAQLPEKVEYVI 996
Query: 1540 YCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSS 1599
C++S LQ+ LY K + + ++ + + + +RK+CNHP +
Sbjct: 997 KCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM----- 1051
Query: 1600 HPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVI-- 1657
FQ ++ S+ +G + + D+ + S K +D ++
Sbjct: 1052 ---FQHIEESFSE------HLGFTGGI-----------VQGLDLYRASGKFELLDRILPK 1091
Query: 1658 ---SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPS- 1713
+ H+VL+FCQ+ ++ ++E+ + ++RLDG+ + DR +++ FNE S
Sbjct: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYR---GFKYLRLDGTTKAEDRGMLLKTFNEPGSE 1148
Query: 1714 IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKG 1773
ADTVI + DWNP DLQA DRAHR+GQ+ V V R+ T
Sbjct: 1149 YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 1208
Query: 1774 TLEEKIMGLQKFKMNIASTIV 1794
++EEKI+ K+K+N+ ++
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVI 1229
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 233 bits (594), Expect = 2e-60
Identities = 178/568 (31%), Positives = 269/568 (47%), Gaps = 92/568 (16%)
Query: 1258 REKERDFIQQMMDPSKAKPFKLPV--AIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMG 1315
+ RDF Q P K + + AI+ L YQ +G+N+L F H IL D+MG
Sbjct: 242 KRNPRDFQQFDHTPEFLKDVMIYLFPAIEGLLHPYQLEGLNFLRFSWSKQTHVILADEMG 301
Query: 1316 LGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNV 1375
LGKT+Q+I ++AS L E+ +WE+EF ++P +NV
Sbjct: 302 LGKTIQSIALLAS---LFEENL----------IPHLVIAPLSTLRNWEREFATWAPQMNV 348
Query: 1376 LVYAGGPSVRYPLQ------------------GQVPTA--------DIVVTSYDVARNDV 1409
++Y G R ++ GQ+ + D+++TSY++ D
Sbjct: 349 VMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDS 408
Query: 1410 DFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFL 1469
LK + ++DEGH +KN SKL ++ +SNHR++LTGTP+QNN+ EL+ L FL
Sbjct: 409 AVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFL 468
Query: 1470 MPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLS 1529
G G+ + FQE F + S+ HK + P +LRR+K++V+
Sbjct: 469 DAGKFGSLEEFQEEFKDINQEEQISR---------------LHKMLAPHLLRRVKKDVMK 513
Query: 1530 DLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLC 1589
D+PPK +LS LQK+ Y + V+ K + A++ + + +RK+C
Sbjct: 514 DMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTK--KGGAQIS----LNNIMMELRKVC 567
Query: 1590 NHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNK 1649
HP +L P +HD EA K LL CG +Q ++K K
Sbjct: 568 CHP-YMLEGVEPV--------------IHDAN-----EAFKQLLESCG-KLQLLDKMMVK 606
Query: 1650 NPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFN 1709
HRVLI+ Q + MLD++E+ K + R+DG V +RQ + +FN
Sbjct: 607 LKE-----QGHRVLIYTQFQHMLDLLEDYCTHK---KWQYERIDGKVGGAERQIRIDRFN 658
Query: 1710 -EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYR 1768
++ + C ADTVI + DWNP DLQAM RAHRLGQ V +YR
Sbjct: 659 AKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYR 718
Query: 1769 IITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
+I +GT+EE++M L K KM + +V +
Sbjct: 719 LINRGTIEERMMQLTKKKMVLEHLVVGK 746
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 232 bits (592), Expect = 4e-60
Identities = 172/547 (31%), Positives = 257/547 (46%), Gaps = 67/547 (12%)
Query: 1256 RGREKERDFIQQMMDPSKAKPFKL---PVAIKA-TLRKYQQDGVNWLAFLNKYHLHGILC 1311
R E+E D D + + F+ P IK+ +R YQ G+NW+ L + ++GIL
Sbjct: 93 RKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILA 152
Query: 1312 DDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSP 1371
D+MGLGKTLQTI ++ YL+ K + +W EF+++ P
Sbjct: 153 DEMGLGKTLQTISLLG---YLKHF--------KNQAGPHIVIVPKSTLQNWVNEFKKWCP 201
Query: 1372 TLNVLVYAGGPSVRYPLQGQVPTA---DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHII 1428
+L + G R V D+ VTSY++ + KK+++ Y V+DE H I
Sbjct: 202 SLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRI 261
Query: 1429 KNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPI 1488
KN +SKL++ ++ + +RL++TGTP+QNN+ ELW+L +FL+P + + F E F
Sbjct: 262 KNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWF---- 317
Query: 1489 ASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQK 1548
++ H + PF+LRRLK EV L PK + LS +Q+
Sbjct: 318 --------NTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQR 369
Query: 1549 QLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQS 1608
Y + K +VV N A K + L +RK NHP L F +
Sbjct: 370 DWYTKVLLKDIDVV-----NGAGKVEKMRLQNILMQLRKCTNHPYL--------FDGAEP 416
Query: 1609 YLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQL 1668
T D H + ++ K+ L LL P + S RVLIF Q+
Sbjct: 417 GPPYT-TDTHLVYNSGKMAILDKLL-----------------PKLQEQGS--RVLIFSQM 456
Query: 1669 KDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXX 1727
MLD++E+ H + + RLDG DR + +++FN D S
Sbjct: 457 TRMLDILEDYC---HWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLG 513
Query: 1728 XXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKM 1787
AD VI + DWNP DLQAMDRAHR+GQKK V V+R+IT+ T+EEKI+ + K+
Sbjct: 514 INLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKL 573
Query: 1788 NIASTIV 1794
+ ++
Sbjct: 574 RLDKMVI 580
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 232 bits (591), Expect = 5e-60
Identities = 168/522 (32%), Positives = 247/522 (47%), Gaps = 71/522 (13%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR YQ +G+NWLA + IL D+MGLGKT+QTI ++ Y Q +
Sbjct: 484 LRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLS---------YLFHQHQLYG 534
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPL--------QGQVPTADIV 1398
+ W++EF+ ++P +NV+VY G R + Q + + +
Sbjct: 535 PFLIVVPLSTLTS--WQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNAL 592
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNN 1458
+T+Y++ D L ++ + +DE H +KN S L K + SNHRL++TGTP+QN+
Sbjct: 593 ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNS 652
Query: 1459 VVELWSLFDFLMPGFLGTEKM-FQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
+ ELWSL F+MP EK F E F + R + S HK + P
Sbjct: 653 LKELWSLLHFIMP-----EKFEFWEDFEEDHGKGRENGYQS------------LHKVLEP 695
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
F+LRR+K++V LP K+ Q E+S LQKQ Y + + + K +
Sbjct: 696 FLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTS-----G 750
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECG 1637
+ ++K CNH L+ + + Q L + G L+ L T L E G
Sbjct: 751 FLNIVMELKKCCNHCYLIKPPEENERENGQEILLSL---IRSSGKLILLDKLLTRLRERG 807
Query: 1638 IGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVD 1697
+RVLIF Q+ MLD++ L KH P F RLDGS+
Sbjct: 808 ----------------------NRVLIFSQMVRMLDILAEYLTIKHYP---FQRLDGSIK 842
Query: 1698 SRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAH 1756
R++ + FN D S D C ADTV+ + DWNP NDLQA RAH
Sbjct: 843 GEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 902
Query: 1757 RLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
R+GQKK VN+YR++TKGT+EE+I+ K KM + ++ + +
Sbjct: 903 RIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMD 944
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 230 bits (587), Expect = 1e-59
Identities = 163/540 (30%), Positives = 264/540 (48%), Gaps = 56/540 (10%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
L+ YQ G+ W+ L +L+GIL D+MGLGKT+QTI I YL + KKT
Sbjct: 366 LKPYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFIT---YLM--EIKKTSGP--- 417
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIVVTSYDV 1404
+W+ EF +++ ++++ Y G R + + + ++++T+++
Sbjct: 418 ---FLVIVPLSTVPNWQNEFDKWAANVHLIAYKGPKETRKVFEPIIKSGKFNVLLTTFEY 474
Query: 1405 ARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKL-INSNHRLVLTGTPIQNNVVELW 1463
+ L K + Y ++DEGH +KN KL + + RL++TGTP+QN + ELW
Sbjct: 475 VIREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELW 534
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRL 1523
+L +FL+P + F++ F P A++ ++ HK + PF+LRRL
Sbjct: 535 ALLNFLLPSIFSSCSTFEQWFNAPFATTGEKVELTQEETMLIIRRL--HKVLRPFLLRRL 592
Query: 1524 KEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQ 1583
K+EV S+LP K+ C++S LQK LY QK ++ NT + + +
Sbjct: 593 KKEVESELPDKMEFVVRCDMSALQKVLYKHM---QKGLLLDGKTNTGS----KSLRNTMI 645
Query: 1584 YMRKLCNHPSLVLN--SSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQ 1641
++RKLCNHP L N S F + + +DL+ + + KLE L +L
Sbjct: 646 HLRKLCNHPFLFENVEESCRNFWDARFI---SAVDLYRV--SGKLELLSRIL-------- 692
Query: 1642 DVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDR 1701
P + + HRVL+F Q+ M+ +VE+ L ++ ++RLDGS +R
Sbjct: 693 ---------PKLQ--ATGHRVLMFFQMTSMMTIVEDFLAGG---TIQYLRLDGSTKPDER 738
Query: 1702 QKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQ 1760
++ KFN S ADTVI + DWNP D+QA DRAHR+GQ
Sbjct: 739 GALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQ 798
Query: 1761 KKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ---QNAGLGSMNTHQLLDLFDADN 1817
K V V+R+IT ++EEKI+ ++K+N+ ++ N G+ L ++ +N
Sbjct: 799 KAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQAGKFDNRSTGAERREILENIIKTEN 858
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 229 bits (585), Expect = 2e-59
Identities = 167/549 (30%), Positives = 257/549 (46%), Gaps = 62/549 (11%)
Query: 1251 SEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGIL 1310
S +LL G + I + + +P L LR YQ +G+ W+ L +GIL
Sbjct: 330 SNDLLEGERQFNLAIHSIQEKVTKQPSLLQ---GGELRSYQLEGLQWMVSLYNNDYNGIL 386
Query: 1311 CDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYS 1370
D+MGLGKT+QTI +IA L S+D +WE EF ++
Sbjct: 387 ADEMGLGKTIQTIALIA--YLLESKDLHGPH---------LILAPKAVLPNWENEFALWA 435
Query: 1371 PTLNVLVYAGGPSVRYPLQGQVPTA--DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHII 1428
P+++ +Y G R ++ ++ ++++T YD+ D FLKK D+NY ++DEGH +
Sbjct: 436 PSISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRL 495
Query: 1429 KNSQSKLAKAVKL-INSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKP 1487
KN + LAK + RL+LTGTPIQN++ ELWSL +FL+P + F+E F P
Sbjct: 496 KNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTP 555
Query: 1488 IASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQ 1547
A ++ + + H + PF+LRR K EV LP K C++S Q
Sbjct: 556 FAECGSASLTDE---EELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQ 612
Query: 1548 KQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQAL-QYMRKLCNHPSLVLNSSHPQFQQV 1606
K Y K V + K Q L +RK CNHP L + + + ++
Sbjct: 613 KLYY-------KQVTDVGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKKP 665
Query: 1607 QSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFC 1666
+ + + K E L LL + KK+ HR+L+F
Sbjct: 666 EI-----------VRASGKFELLDRLLPKL--------KKAG-----------HRILLFS 695
Query: 1667 QLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE-DPSIDCXXXXXXXXX 1725
Q+ ++D++E + L ++RLDGS + R ++++FNE D
Sbjct: 696 QMTRLIDLLE---IYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGG 752
Query: 1726 XXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKF 1785
ADT+I + DWNP D QA DRAHR+GQKK V V+ +++ G++EE I+ K
Sbjct: 753 LGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQ 812
Query: 1786 KMNIASTIV 1794
KM I + ++
Sbjct: 813 KMGIDAKVI 821
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 228 bits (581), Expect = 7e-59
Identities = 163/521 (31%), Positives = 245/521 (46%), Gaps = 69/521 (13%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR YQ +G+NWLA IL D+MGLGKT+QTI + YL E
Sbjct: 481 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFL---NYLFHEHQL-------- 529
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--------DIV 1398
W++E Q ++ +N +VY G + R ++ T +I+
Sbjct: 530 YGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNIL 589
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNN 1458
+T+Y++ D FL ++ + +DE H +KN S L K + SNHRL++TGTP+QN+
Sbjct: 590 LTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNS 649
Query: 1459 VVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPF 1518
+ ELWSL F+MP + + F+E K HK++ PF
Sbjct: 650 LKELWSLLHFIMPEKFSSWEDFEEEHGK----------------GREYGYASLHKELEPF 693
Query: 1519 MLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHI 1578
+LRR+K++V LP K+ Q E+S LQKQ Y + + + K + +
Sbjct: 694 LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTS-----GF 748
Query: 1579 FQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGI 1638
+ ++K CNH L+ + +F Q L H I + KL L LL+
Sbjct: 749 LNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ------HLIRSSGKLILLDKLLIR--- 799
Query: 1639 GIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDS 1698
+ ++ N RVLIF Q+ MLD++ L + P F RLDGS+
Sbjct: 800 ----LRERGN------------RVLIFSQMVRMLDILAEYLKYRQFP---FQRLDGSIKG 840
Query: 1699 RDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHR 1757
R++ + FN + S D C ADTV+ + DWNP NDLQA RAHR
Sbjct: 841 ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR 900
Query: 1758 LGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
+GQKK VN+YR++TKG++EE I+ K KM + ++ + +
Sbjct: 901 IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMD 941
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 228 bits (581), Expect = 7e-59
Identities = 165/526 (31%), Positives = 250/526 (47%), Gaps = 75/526 (14%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR YQ G+NWL L + ++GIL D+MGLGKTLQTI ++ YL+ Y+
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG---YLKH--YRNIPGPHM- 236
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVR--YPLQGQVPTA-DIVVTSYD 1403
+W EF+++ P+L V+ + G R + +P D+ VTSY+
Sbjct: 237 -----VLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYE 291
Query: 1404 VARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELW 1463
+ + KK+ + Y V+DE H IKN +SKL++ V+ S +RL+LTGTP+QNN+ ELW
Sbjct: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRL 1523
+L +FL+P + F F +K H + PF+LRR+
Sbjct: 352 ALLNFLLPDVFNSADDFDSWF------------DTKNCLGDQKLVERLHAVLKPFLLRRI 399
Query: 1524 KEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQ 1583
K +V LPPK Y LS +Q++ Y + K + D+ N++ +K + L
Sbjct: 400 KTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-----DIDVLNSSGKMDKMRLLNILM 454
Query: 1584 YMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDV 1643
+RK CNHP L F + T D H + ++ K+ L LL +
Sbjct: 455 QLRKCCNHPYL--------FDGAEPGPPYT-TDEHIVSNSGKMVVLDKLLAKL------K 499
Query: 1644 EKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQ- 1702
E+ S RVLIF Q+ +LD++E+ + + + RLDG +R+
Sbjct: 500 EQGS-------------RVLIFSQMTRLLDILEDYCMWR---GYEYCRLDGQTPHEERED 543
Query: 1703 -----------KVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
+ + FN + S AD VI + DWNP DLQ
Sbjct: 544 KFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 603
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
AMDRAHR+GQKK V V+R+IT T+EE+I+ + K+ + S ++ Q
Sbjct: 604 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 649
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 228 bits (580), Expect = 9e-59
Identities = 171/554 (30%), Positives = 263/554 (46%), Gaps = 72/554 (12%)
Query: 1286 TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
+L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q I +A YL E
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA---YLYQEGNNGPH---- 548
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPS----VRYPLQGQVPTADIVVTS 1401
+W +E + PTL VL Y G +R+ + + +++VT+
Sbjct: 549 -----LIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTT 603
Query: 1402 YDVA---RNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNN 1458
Y+ A +D ++ NY + DEGH++KN S + + IN+N+RL+LTGTP+QNN
Sbjct: 604 YNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663
Query: 1459 VVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXH-KQVL- 1516
++EL SL +F+MP + I +SKT S H KQ++
Sbjct: 664 LLELMSLLNFVMPHMFSSS-------TSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIK 716
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRR+KEEVL LPPK + C +S+ Q+QLY N ++K I N +E
Sbjct: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLF----NRLKKSINN---LEKNT 769
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ + +RK+ NHP L H Q+ + + + L + H EA L+ E
Sbjct: 770 EMCNVMMQLRKMANHPLL-----HRQYYTAEKLKEMSQLMLKEPTHC---EANPDLIFED 821
Query: 1637 GIGIQDVE---------------------KKSNKNPSIDNVISQ-----HRVLIFCQLKD 1670
+ D E S K + ++S+ RV++F Q
Sbjct: 822 MEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTM 881
Query: 1671 MLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXX 1730
MLD++E LLK H ++RLDG +R ++ +FN D I
Sbjct: 882 MLDILE-VLLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINL 938
Query: 1731 XXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIA 1790
A+ VI + D NP ND QA DR HR+GQ K V V ++I++GT+EE ++ + + K+ +
Sbjct: 939 TSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
Query: 1791 STIVNQQNAGLGSM 1804
+ GSM
Sbjct: 999 QDMTTVDEGDEGSM 1012
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 227 bits (578), Expect = 2e-58
Identities = 161/533 (30%), Positives = 265/533 (49%), Gaps = 78/533 (14%)
Query: 1283 IKATLRKYQQDGVNWL--AFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKT 1340
I TLR YQ +G+N+L ++LN ++ IL D+MGLGKT+Q++ ++
Sbjct: 637 IGGTLRDYQLEGLNFLVNSWLNDTNV--ILADEMGLGKTVQSVSMLGF-----------L 683
Query: 1341 QSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQ--------GQV 1392
Q+ + +W +EF+++ P +N++VY G + R G+
Sbjct: 684 QNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVRNKTNDVHKVGRP 743
Query: 1393 PTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTG 1452
+ ++T+Y+V D L K + Y ++DE H +KNS+++L A+ ++ ++L++TG
Sbjct: 744 IKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITG 803
Query: 1453 TPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXH 1512
TP+QN+V ELW+L FL PG + F E + K ++S S+ ++ H
Sbjct: 804 TPLQNSVEELWALLHFLDPGKFKNKDEFVENY-KNLSSFNESELAN------------LH 850
Query: 1513 KQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEV 1572
++ P +LRR+ ++V LPPKI + E+S LQKQ Y +++ + + K +
Sbjct: 851 LELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRG---- 906
Query: 1573 ENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTL 1632
N+ + + ++K CNHP L ++ H G D++D K
Sbjct: 907 -NQVSLLNIVVELKKCCNHPFLFESADHGY-----------GGDINDNSKLDK------- 947
Query: 1633 LLECGIGIQDVEKKSNKNPSIDNVI-----SQHRVLIFCQLKDMLDMVENDLLKKHLPSV 1687
+ S K +D ++ ++HRVLIF Q+ MLD++ L L
Sbjct: 948 ----------IILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYL---SLRGF 994
Query: 1688 TFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPM 1746
F RLDGS + RQ+ + FN S D C ADTV+ + DWNP
Sbjct: 995 QFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQ 1054
Query: 1747 NDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNA 1799
NDLQAM RAHR+GQ++VVN+YR +T ++EE+I+ K KM + ++ + NA
Sbjct: 1055 NDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNA 1107
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 226 bits (575), Expect = 3e-58
Identities = 157/523 (30%), Positives = 253/523 (48%), Gaps = 74/523 (14%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIAS--DQYLRSEDYKKTQSEK 1344
LR YQ +G+NW+ + IL D+MGLGKT+Q+I ++AS +Y + Y
Sbjct: 405 LRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLS 464
Query: 1345 TRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQG--------QVPTAD 1396
T W++EF Q++P +N++VY G R ++ + +
Sbjct: 465 TMAA-------------WQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKIN 511
Query: 1397 IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
++T+Y++ D FL D+ ++DE H +KN +S L K++ NH+L++TGTP+Q
Sbjct: 512 AILTTYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQ 571
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
N++ ELW+L F+MP + F+ + +++++ K HK++
Sbjct: 572 NSLKELWALLHFIMPEKFDCWEEFE---------TAHNESNHK-------GISALHKKLE 615
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRR+K++V LPPK Q +++ QKQ Y + K + K ++ +
Sbjct: 616 PFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSI-----N 670
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ ++K CNH SL H + Q L Q L G L+ L L +
Sbjct: 671 GFVNLVMELKKCCNHASLTRQYDH-IYDDAQGRLQQL---LKSSGKLILLDKLLCRLKDK 726
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSV 1696
G HRVLIF Q+ MLD+++ L + PS RLDGS+
Sbjct: 727 G----------------------HRVLIFSQMVMMLDILQEYLQLRRFPS---QRLDGSM 761
Query: 1697 DSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRA 1755
+ R++ + +N S D ADTVI + DWNP NDLQAM RA
Sbjct: 762 RADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRA 821
Query: 1756 HRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
HR+GQ K VN+YR++TKG++EE+I+ K K+ + ++ + +
Sbjct: 822 HRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRMD 864
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 225 bits (573), Expect = 6e-58
Identities = 180/567 (31%), Positives = 276/567 (47%), Gaps = 75/567 (13%)
Query: 1273 KAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYL 1332
K KP L I +L+ YQQ G+NWL L + + IL DDMGLGKT Q I A
Sbjct: 560 KGKPRLLSPEI--SLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFA----- 612
Query: 1333 RSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGG----PSVRYPL 1388
Y K +E +W +EFQ+++P L + Y G +R L
Sbjct: 613 ----YLKQINEPGPHLVVVPSSTLE---NWLREFQKFAPALKIEPYYGSLQEREELRDIL 665
Query: 1389 QGQVPTADIVVTSYDVA---RNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSN 1445
+ D++VT+Y++A + DV FLK ++N V DEGH++KNS S+ + I +N
Sbjct: 666 ERNAGKYDVIVTTYNLAAGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRAN 725
Query: 1446 HRLVLTGTPIQNNVVELWSLFDFLMPG-FLGTEKMFQERFAKPIASSRNSKTSSKXXXXX 1504
RL+LTGTP+QNN+ EL SL +F+MP F+ ++ F F + ++ ++K +
Sbjct: 726 FRLLLTGTPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLLAQE 785
Query: 1505 XXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYN---DFVKKQKNV 1561
+ PF+LRR K++VL LPPK YCEL+ +QK++Y+ V + K +
Sbjct: 786 AITRAKT--MMKPFILRRRKDQVLKHLPPKHTHIQYCELNAIQKKIYDKEIQIVLEHKRM 843
Query: 1562 VE-----KDIENTAEVE--NKQHIFQALQ------------YMRK--------LCNHPSL 1594
++ KD + ++++ + +++ AL+ Y K + + P+
Sbjct: 844 IKDGELPKDAKEKSKLQSSSSKNLIMALRKASLHPLLFRNIYNDKIITKMSDAILDEPAY 903
Query: 1595 VLNSSHPQFQQVQSYLSQTGMDLHDI-----GHAPKLEALKTLLLECGIGIQDVEKKSNK 1649
N + ++ SY+ T +LH + K + ++ G D KK K
Sbjct: 904 AENGNKEYIKEDMSYM--TDFELHKLCCNFPNTLSKYQLHNDEWMQS--GKIDALKKLLK 959
Query: 1650 NPSIDNVISQHRVLI---FCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVR 1706
+D Q +VLI F Q+ D+L+MV + L K F+RLDGS DRQ ++
Sbjct: 960 TIIVD---KQEKVLIFSLFTQVLDILEMVLSTLDYK------FLRLDGSTQVNDRQLLID 1010
Query: 1707 KFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNV 1766
KF ED I A+ VI + +NP +D QA DRAHR+GQ K VN+
Sbjct: 1011 KFYEDKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNI 1070
Query: 1767 YRIITKGTLEEKIMGLQKFKMNIASTI 1793
+ITK ++EEKI L K K+ + S I
Sbjct: 1071 TTLITKDSIEEKIHQLAKNKLALDSYI 1097
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 224 bits (572), Expect = 8e-58
Identities = 166/586 (28%), Positives = 264/586 (44%), Gaps = 108/586 (18%)
Query: 1276 PFKLPVAIKA-TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRS 1334
PF+ P +R YQ +G+ WL L + ++GIL D+MGLGKT+Q I IA
Sbjct: 211 PFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA------- 263
Query: 1335 EDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVR-------YP 1387
++ +W EF++++P + ++Y G R Y
Sbjct: 264 -----LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYK 318
Query: 1388 LQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHR 1447
+G + +V+TS+++A D + L+ + Y ++DEGH IKN + +L + +K N++++
Sbjct: 319 RKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNK 378
Query: 1448 LVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXX 1507
L+LTGTP+QNN+ ELWSL +FL+P K F+ F I S +
Sbjct: 379 LLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNV 436
Query: 1508 XXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLY---------------- 1551
H+ + PF+LRRLK +V ++PPK Y LS Q+ Y
Sbjct: 437 LHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSE 496
Query: 1552 -------------------------NDF--------------VKKQKNVVEKDIENTAEV 1572
+DF V +++ VVE +I +EV
Sbjct: 497 KETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEV 556
Query: 1573 ENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTL 1632
K + + +RK CNHP L+ P Q+ + +D + ++ K L +
Sbjct: 557 NLK--LQNIMMLLRKCCNHPYLIEYPIDPVTQEFK-------IDEELVTNSGKFLILDRM 607
Query: 1633 LLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRL 1692
L E ++K+ H+VL+F Q+ MLD++ + HL F RL
Sbjct: 608 LPE-------LKKRG------------HKVLLFSQMTSMLDILMDYC---HLRDFNFSRL 645
Query: 1693 DGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAM 1752
DGS+ +R+K + FN DP + ADTVI + DWNP +DLQA
Sbjct: 646 DGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQ 705
Query: 1753 DRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
DR HR+GQ K V VYR++T T+++KI+ K + I+++ +
Sbjct: 706 DRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNH 751
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 224 bits (571), Expect = 1e-57
Identities = 162/549 (29%), Positives = 256/549 (46%), Gaps = 61/549 (11%)
Query: 1251 SEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGIL 1310
S +LL G+ + I + + +P L LR YQ +G+ W+ L +L+GIL
Sbjct: 400 SNDLLEGQRQYNSAIHSIQEKVTEQPSLLE---GGELRSYQLEGLQWMVSLFNNNLNGIL 456
Query: 1311 CDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYS 1370
D+MGLGKT+QTI +IA YL K +W EF +
Sbjct: 457 ADEMGLGKTIQTISLIA---YLLEN--------KGVPGPYLIVAPKAVLPNWVNEFATWV 505
Query: 1371 PTLNVLVYAGGPSVRYPLQGQVPTA---DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHI 1427
P++ +Y G R ++ ++ ++++T YD+ D FLKK ++ Y ++DEGH
Sbjct: 506 PSIAAFLYDGRLEERKAIREKIAGEGKFNVLITHYDLIMRDKAFLKKIEWYYMIVDEGHR 565
Query: 1428 IKNSQSKLAKAVKL-INSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAK 1486
+KN +S LAK + RL+LTGTPIQN++ ELWSL +FL+P + + F+E F
Sbjct: 566 LKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNA 625
Query: 1487 PIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDL 1546
P A N + + H + PF+LRR K+EV LP K C++S
Sbjct: 626 PFADRGNVSLTDE---EELLIIHRLHHVIRPFILRRKKDEVEKFLPGKTQVILKCDMSAW 682
Query: 1547 QKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQV 1606
QK Y + ++ + ++N +RK CNHP L + + +++
Sbjct: 683 QKVYYKQVTDMGRVGLQTGSGKSKSLQN------LTMQLRKCCNHPYLFVGGDYNMWKKP 736
Query: 1607 QSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFC 1666
+ + +L L+ L L + G HR+L+F
Sbjct: 737 EIVRASGKFEL--------LDRLLPKLRKAG----------------------HRILLFS 766
Query: 1667 QLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE-DPSIDCXXXXXXXXX 1725
Q+ ++D++E L L ++RLDG+ + R ++++FNE D
Sbjct: 767 QMTRLIDVLEIYLT---LNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGG 823
Query: 1726 XXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKF 1785
ADTVI + DWNP D QA DRAHR+GQKK V V+ +++ G++EE I+ K
Sbjct: 824 LGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQ 883
Query: 1786 KMNIASTIV 1794
KM I + ++
Sbjct: 884 KMGIDAKVI 892
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 223 bits (569), Expect = 2e-57
Identities = 169/531 (31%), Positives = 257/531 (47%), Gaps = 66/531 (12%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQ-----TICIIASDQYLRSEDYKKTQ 1341
LR+YQ +G+ WL L HL+GIL D+MGLGKT+Q T+ +I+ YL +
Sbjct: 793 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQMGLGKTVQVISLICYLM-------E 845
Query: 1342 SEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPL---QGQVPTADIV 1398
++ R G W+ E ++P+++ +VY G P R L Q +++
Sbjct: 846 TKNDRGPFLVVVPSSVLPG-WQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVL 904
Query: 1399 VTSYDVARNDVDF--LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
+T+Y+ N D L K ++Y ++DEGH IKN+ KL +K S+HRL+LTGTP+Q
Sbjct: 905 LTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQ 964
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL 1516
NN+ ELW+L +FL+P + + F + F KP S+ S ++ H+ +
Sbjct: 965 NNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGES-SALLSEEENLLIINRLHQVLR 1023
Query: 1517 PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ 1576
PF+LRRLK +V ++LP KI + CE S QK L VE ++ + +++
Sbjct: 1024 PFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKR--------VEDNLGSIGNAKSRA 1075
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ ++ +R +CNHP YLSQ LH H L ++ C
Sbjct: 1076 -VHNSVMELRNICNHP----------------YLSQ----LHSEEH-----FLPPIVRLC 1109
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSV 1696
G +E P + + HRVL F + +LD++E+ L L ++RLDG
Sbjct: 1110 G----KLEMLDRMLPKLK--ATDHRVLFFSTMTRLLDVMEDYLT---LKGYKYLRLDGQT 1160
Query: 1697 DSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRA 1755
DR ++ FN+ S ADTVI + DWNP DLQA RA
Sbjct: 1161 SGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARA 1220
Query: 1756 HRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNT 1806
HR+GQKK V V R T ++EE++ + K+ +A+ + AG NT
Sbjct: 1221 HRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSI---TAGFFDNNT 1268
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 220 bits (560), Expect = 2e-56
Identities = 159/527 (30%), Positives = 249/527 (47%), Gaps = 56/527 (10%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P+ L+ YQ GV WL L + L+GIL D MGLGKT+QTI ++ +L+
Sbjct: 195 PLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLS---HLKGNGLDG 251
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQV------P 1393
+W E +++P++N ++Y G + R L+ + P
Sbjct: 252 PY---------LVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGP 302
Query: 1394 TADIVVTSYDVARNDVD-FLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTG 1452
IV+TSY+VA ND L+ Y + Y V+DEGH +KN + KL + +K + +++L+LTG
Sbjct: 303 KFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTG 362
Query: 1453 TPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXH 1512
TP+QNN+ ELWSL +F++P + F+ F ++N T + H
Sbjct: 363 TPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFS-EKNKNEATKEEEEKRRAQVVSKLH 421
Query: 1513 KQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDI-ENTAE 1571
+ PF+LRR+K +V LP K Y ++D QK+ V N +E + EN
Sbjct: 422 GILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLV---NNTLEAHLGENAIR 478
Query: 1572 VEN-KQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALK 1630
+ K + + +RK CNHP L+ Q Q SYL ++ +G K L+
Sbjct: 479 GQGWKGKLNNLVIQLRKNCNHPDLL------QGQIDGSYLYPPVEEI--VGQCGKFRLLE 530
Query: 1631 TLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFM 1690
LL+ + H+VLIF Q +LD+++ +K
Sbjct: 531 RLLVRL-------------------FANNHKVLIFSQWTKLLDIMDYYFSEK---GFEVC 568
Query: 1691 RLDGSVDSRDRQKVVRKF-NEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDL 1749
R+DGSV +R++ ++ F +E S ADT I + DWNP DL
Sbjct: 569 RIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDL 628
Query: 1750 QAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
QAMDR HR+GQ K V+VYR+ T ++E +++ K+ + ++ Q
Sbjct: 629 QAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQ 675
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 218 bits (554), Expect = 1e-55
Identities = 155/529 (29%), Positives = 254/529 (47%), Gaps = 65/529 (12%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR YQ +G+NWL +++ ++ IL D+MGLGKTLQTI + +Y++ E +
Sbjct: 53 LRDYQIEGLNWLINMHENSINCILADEMGLGKTLQTIAFLGYIRYVKKERKRHL------ 106
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLV-YAGGPSVRYPLQGQVPTA-DIVVTSYDV 1404
+W +EF+++ P V V Y+ +R + + + D +T+Y++
Sbjct: 107 -----IILPKSTLANWRREFRKFMPNYKVRVFYSSRKEMRREAEEIMSSRWDACLTTYEM 161
Query: 1405 ARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWS 1464
N L ++Y V+DE H IKN S L+K V++ + +HRL++TGTP+QNNV ELW+
Sbjct: 162 CINARSILNTVKWSYIVIDEAHRIKNEHSLLSKIVRIFSCDHRLLITGTPLQNNVHELWA 221
Query: 1465 LFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLK 1524
L +F++P + F E + I + F LRR K
Sbjct: 222 LLNFIVPEIFNDAEKF-ESYVMNIDEGDGE------------AIRRIRSVLQLFFLRREK 268
Query: 1525 EEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQY 1584
+V LPPK I + Y +LS +Q++ Y +K+ + + + + K + +
Sbjct: 269 IDVEMSLPPKKIVNLYSKLSPMQREWYRMLLKRDLSPL------GSTRDPKGMLMNVVMQ 322
Query: 1585 MRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVE 1644
+RK CNHP L ++ + D H I ++ K+ L LL ++
Sbjct: 323 LRKCCNHPYLFPDAEPKPYTN----------DKHIIENSGKMIVLDKLL-------ASLK 365
Query: 1645 KKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKV 1704
K + RVLIF Q+ MLD++E+ + + + R+DGS RDR +
Sbjct: 366 AKGS------------RVLIFSQMSMMLDILEDYAMFR---EYEYCRIDGSTSYRDRTEA 410
Query: 1705 VRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKV 1763
+ FN + S ADTVI + DWNP DLQA DRAHR+GQKK
Sbjct: 411 IDGFNAEGSEKFLFLLTTRAGGLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQ 470
Query: 1764 VNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDL 1812
V V+R+I++ T+EE+I+ K+ + ++ + S++ +L+D+
Sbjct: 471 VVVFRLISENTVEERIVYRSLQKLKLDDILLQGRYHRSSSVSQSELIDI 519
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 216 bits (551), Expect = 2e-55
Identities = 169/532 (31%), Positives = 253/532 (46%), Gaps = 47/532 (8%)
Query: 1281 VAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKT 1340
+A TL+ YQ G+NWL + K L GIL D+MGLGKT Q I +AS
Sbjct: 408 IASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLAS------------ 455
Query: 1341 QSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD--IV 1398
EK G+W +EF+++ P+L V Y+G S R + + D ++
Sbjct: 456 LKEKGIQNRHLVVVPSSTLGNWLREFEKFCPSLRVESYSGTQSERINKRYYLMDTDFDVL 515
Query: 1399 VTSYDVA---RNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPI 1455
VT+Y +A R+D FL+K ++ + DEGH +KN S+ K + I +N RL++TGTP+
Sbjct: 516 VTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPL 575
Query: 1456 QNNVVELWSLFDFLMPGFLGTEKMFQERF--AKPIASSRNSKTSSKXXXXXXXXXXXXHK 1513
QNN+ EL SL F++P K+F I + + K
Sbjct: 576 QNNLKELISLLAFMLP------KVFDNNMQGLDIIYKIKTTSDGDIERAYLSQERISRAK 629
Query: 1514 QVL-PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEV 1572
++ PF+LRR KE VLSDLPPKI YC + + Q LY V + KN+V + EN
Sbjct: 630 TIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQLSLYLS-VLELKNLVNANRENILMQ 688
Query: 1573 ENKQHIFQALQYMRKLCNHPSLVLNS-----------SHPQFQQVQSYLSQTGMDLHDIG 1621
K + Q L R N +L L S ++PQ+ + + +LH +
Sbjct: 689 LRKAALHQLL--FRSQYNLETLSLMSKRILREDAYLDANPQY-IFEDMEVMSDFELHKL- 744
Query: 1622 HAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLK 1681
A + L L+ G D K + R+LIF Q +LD++E L
Sbjct: 745 -ADQYRHLHPFALK-GKPWMDSAKVKKLCSLLKKSRPNERILIFSQFTQVLDILEYVL-- 800
Query: 1682 KHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEH 1741
+ + F+RLDGS RQ+++ F+ + + A+ VI +
Sbjct: 801 -NTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGGFGINLTCANIVILFDC 859
Query: 1742 DWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTI 1793
+NP +D+QA DRAHR+GQ + V+VYR+ITK T+EE I L K+ + S++
Sbjct: 860 SFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANTKLTLESSL 911
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 215 bits (547), Expect = 6e-55
Identities = 178/592 (30%), Positives = 279/592 (47%), Gaps = 77/592 (13%)
Query: 1253 ELLRGREKERDFIQQMMDPSKAKPFKLPVAIK-ATLRKYQQDGVNWLAFLNKYHLHGILC 1311
+ + ++K D Q P A K P +K L+ YQ +G+NWL L + L+GIL
Sbjct: 188 DFFKKQKKNEDTTTQNGAPDDAA-IKQPRLLKNCILKPYQLEGLNWLITLYENGLNGILA 246
Query: 1312 DDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSP 1371
D+MGLGKT+Q+I ++A ++ D K +W EF +++P
Sbjct: 247 DEMGLGKTVQSIALLA---FIYEMDTKGP---------FLVTAPLSTLDNWMNEFAKFAP 294
Query: 1372 TLNVLVYAGGPSVRYPLQG------QVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEG 1425
L VL Y G + Q IV+TSY++ D D + ++ + ++DEG
Sbjct: 295 DLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEIILRDTDLIMSQNWKFLIVDEG 354
Query: 1426 HIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERF- 1484
H +KN +L K +K IN+++RL+LTGTP+QNN+ ELWSL +F+MP ++F + F
Sbjct: 355 HRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFD 414
Query: 1485 --AKPIASSRNSKTSSKXXXXXXXXXXXX--HKQVLPFMLRRLKEEVLSD-LPPKIIQDY 1539
+ + S NS+ +K H + PF+LRRLK+ VL++ LPPK
Sbjct: 415 FDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYII 474
Query: 1540 YCELSDLQKQLY------------------------NDFVKKQKNVVEKDIEN------- 1568
C ++ Q++ Y ++++ N +D N
Sbjct: 475 NCPMTSAQEKFYKAGLNGKLKKTMFKELIKDFFTLNDEYIGHVSNRSIRDFINYKLSGNE 534
Query: 1569 TAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLE- 1627
T+ +NK I L M KL +L + S+ + Q + L Q +D + + P L
Sbjct: 535 TSNTDNK--INPTLLQMDKLYKK-NLQMEISNKKLQNMMMQLRQI-IDSTFLFYFPYLHP 590
Query: 1628 ---ALKTLLLECGIGIQDVEKKSNKNPSIDNVISQ-HRVLIFCQLKDMLDMVENDLLKKH 1683
L+TLL G +Q ++K I +IS+ H+VLI+ Q +MLD++E+
Sbjct: 591 EDLTLETLLKTSG-KLQILQKL------IPPLISEGHKVLIYSQFVNMLDLIEDWC---D 640
Query: 1684 LPSVTFMRLDGSVDSRDRQKVVRKFNEDPSI-DCXXXXXXXXXXXXXXXXADTVIFVEHD 1742
L S R+DGSV++ R+ + KFN + ADTV+ + D
Sbjct: 641 LNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSD 700
Query: 1743 WNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
WNP DLQAMDR HR+GQ+ V VYR+ T+E I+ K N+ ++
Sbjct: 701 WNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVI 752
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 215 bits (547), Expect = 6e-55
Identities = 163/561 (29%), Positives = 256/561 (45%), Gaps = 76/561 (13%)
Query: 1258 REKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLG 1317
REK+R ++ S +K +K +LR+YQ +GV+WL + + IL D+MGLG
Sbjct: 1162 REKQRPEPEEWKKMSTSKVWKNG----NSLREYQFEGVDWLLYCYYNAQNCILADEMGLG 1217
Query: 1318 KTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLV 1377
KT+QTI ++ R DY +W +EF+ ++ +N +V
Sbjct: 1218 KTVQTITFLS-----RIYDYGI-------HGPFLVVVPLSTIQNWVREFETWTD-MNAIV 1264
Query: 1378 YAGGPSVRYPLQG-----------------QVPTADIVVTSYDVARNDVDFLKKYDYNYC 1420
Y G R LQ D ++T+++ +DV+FLKK + C
Sbjct: 1265 YHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALITTFETVVSDVEFLKKIPWRVC 1324
Query: 1421 VLDEGHIIKNSQSKL-AKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKM 1479
V+DE H +KN KL + HR++LTGTP+QNN+ EL+SL +FL P
Sbjct: 1325 VIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSAT 1384
Query: 1480 FQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDY 1539
F E+F + K + + P MLRRLKE+V L PK
Sbjct: 1385 FLEQFGSCQTDDQVQKLQ---------------EILKPMMLRRLKEDVEKSLGPKEETII 1429
Query: 1540 YCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSS 1599
+LSD+QK+ Y + ++E++ + + + + + +RK CNHP L+ +
Sbjct: 1430 EVQLSDMQKKFY-------RAILERNFSHLCKGTSAPSLMNVMMELRKCCNHPFLINGAE 1482
Query: 1600 HPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQ 1659
+ L+ D + H ++A ++L I+ + K K+
Sbjct: 1483 EAIMNDFR--LAHPDWDEETLAHKALIQASGKVVL-----IEKLLPKLRKDG-------- 1527
Query: 1660 HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXX 1719
H+VLIF Q+ +LD++E L+ P F R+DG+V RQ + +F+++ S
Sbjct: 1528 HKVLIFSQMVKVLDLLEEFLISMSYP---FERIDGNVRGDLRQAAIDRFSKENSDRFVFL 1584
Query: 1720 X-XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEK 1778
ADTVI + DWNP NDLQA R HR+GQKK+V VYR+IT T E +
Sbjct: 1585 LCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYERE 1644
Query: 1779 IMGLQKFKMNIASTIVNQQNA 1799
+ K+ + ++ A
Sbjct: 1645 MFDKASLKLGLDKAVLQSTTA 1665
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 213 bits (541), Expect = 3e-54
Identities = 160/533 (30%), Positives = 247/533 (46%), Gaps = 73/533 (13%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHG--ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEK 1344
LR YQ +GVNWLA ++H IL D+MGLGKT QTI + YL
Sbjct: 46 LRSYQLEGVNWLA--QRFHCQNGCILGDEMGLGKTCQTIALFI---YLAGR--------L 92
Query: 1345 TRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD---IVVTS 1401
+W++E Q+++P L+ + YAG R LQ + +++T+
Sbjct: 93 NDEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTT 152
Query: 1402 YDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVE 1461
Y++ D FLK + ++ V+DE H +KN S L K + + L+LTGTPIQN++ E
Sbjct: 153 YEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQE 212
Query: 1462 LWSLFDFLMPGFLGTEKM--FQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFM 1519
L+SL F+ P E++ F +R+ S + HK + PF+
Sbjct: 213 LYSLLSFVEPDLFSKEEVGDFIQRYQDIEKESESGNE--------------LHKLLQPFL 258
Query: 1520 LRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIF 1579
LRR+K EV ++LP K Y +S LQK+ Y + K + E + +++N
Sbjct: 259 LRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQN----- 313
Query: 1580 QALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIG 1639
L +RK +HP L + P+ +V +L++ LH L+ L L G
Sbjct: 314 -ILSQLRKCVDHPYL-FDGVEPEPFEVGDHLTEASGKLH------LLDKLLAFLYSGG-- 363
Query: 1640 IQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSR 1699
HRVL+F Q+ MLD++++ + + ++ R+DGSV
Sbjct: 364 --------------------HRVLLFSQMTQMLDILQDYMDYR---GYSYERVDGSVRGE 400
Query: 1700 DRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLG 1759
+R ++ F + P I ADTVIFV+ D+NP NDLQA RAHR+G
Sbjct: 401 ERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIG 459
Query: 1760 QKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDL 1812
Q K V V R+I + T+EE + K+ + + I+ + LG+ DL
Sbjct: 460 QNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADL 512
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 213 bits (541), Expect = 3e-54
Identities = 155/530 (29%), Positives = 243/530 (45%), Gaps = 49/530 (9%)
Query: 1260 KERDFIQQMMDPSK-AKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGK 1318
+E +F + + K + F +P + ++L YQQDGV W+ L + G+L DDMGLGK
Sbjct: 123 EEDEFSEHIKKEGKECEGFSVPGFLWSSLFPYQQDGVRWMLRLYRDEKGGVLADDMGLGK 182
Query: 1319 TLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVY 1378
T+Q I + + L S K W E++++ P V ++
Sbjct: 183 TIQVIVFLGA--LLHSRVVSKA----------LILCPATIVSQWMDEWKRFYPF--VRIF 228
Query: 1379 AGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKA 1438
G P+ + + SY+ + V K + ++ +LDEGH IKN +++ +
Sbjct: 229 FGFPNE--------DCEGVYLMSYEKFKAGV---KNFLWDVLILDEGHRIKNKNAQITLS 277
Query: 1439 VKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSS 1498
VK S R VL+GTPIQNN+ ELWS+FDF+ PG LG+ F E F + I S+
Sbjct: 278 VKKARSRGRFVLSGTPIQNNLGELWSIFDFVNPGLLGSHTSFNEEFEEVIRRGGYRNASN 337
Query: 1499 KXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQ 1558
+ P++LRR K +V LP K + +C L+ Q +LYN V +
Sbjct: 338 LQVEKAYRHSLMLRSLIEPYILRRTKSQVSHKLPSKEDKIVFCSLTPAQIELYNR-VLES 396
Query: 1559 KNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLH 1618
K++++ + K ++ + +RK+CNHP L+ + + S
Sbjct: 397 KHIMK-------VLTGKANLLSGISMLRKVCNHPRLLFPRKLGVSEDCEEEASDEKNGED 449
Query: 1619 DIGHAPKLEALKTLL-LECGIGI-QDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVE 1676
+ P + L+ C I I D+ KK ++VL+F Q MLD++E
Sbjct: 450 EALELPGADVSYDLVSSSCKIKILVDLLKKWRS--------EGNKVLVFSQTIRMLDIIE 501
Query: 1677 NDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTV 1736
+ K T++R+DG + R +V +FNED + A +
Sbjct: 502 RCVRK-----YTYLRMDGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRI 556
Query: 1737 IFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFK 1786
+ + DWNP D QA +RA R GQKK V +YR + K T+EEK+ Q FK
Sbjct: 557 VIYDPDWNPSTDTQAKERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQIFK 606
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 211 bits (538), Expect = 7e-54
Identities = 151/525 (28%), Positives = 252/525 (47%), Gaps = 72/525 (13%)
Query: 1290 YQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXX 1349
+Q + +NWL + IL D+MGLGKT+ ++S + E
Sbjct: 678 HQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYF-----------EFGVARP 726
Query: 1350 XXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQG------------QVPTA-- 1395
+W EF ++P LNV+ Y G R ++ + PT+
Sbjct: 727 CLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSYK 786
Query: 1396 -DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTP 1454
++++T+Y++ D L+ + V+DEGH +KNS+SKL + + HR++LTGTP
Sbjct: 787 FNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTP 846
Query: 1455 IQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQ 1514
+QNN+ E+++L +FL P + F+ERF ++ + + K
Sbjct: 847 LQNNIGEMYNLLNFLQPSSFPSLSSFEERFHDLTSAEKVEELK---------------KL 891
Query: 1515 VLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVEN 1574
V P MLRRLK++ + ++PPK + EL+ +Q + Y + K + + N +
Sbjct: 892 VAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQI----LRNIGKGVA 947
Query: 1575 KQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLL 1634
+Q + + +RK+CNHP L+ + P+ ++ LHD+ +++A L L
Sbjct: 948 QQSMLNIVMQLRKVCNHPYLI-PGTEPESGSLEF--------LHDM----RIKASAKLTL 994
Query: 1635 ECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDG 1694
+ + K +K HRVLIF Q+ +LD++E D L TF R+DG
Sbjct: 995 -----LHSMLKVLHK--------EGHRVLIFSQMTKLLDILE-DYLNIEFGPKTFERVDG 1040
Query: 1695 SVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDR 1754
SV DRQ + +FN+D + ADTVI + D+NP D+QAM+R
Sbjct: 1041 SVAVADRQAAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNR 1100
Query: 1755 AHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNA 1799
AHR+GQ K + VYR++ + ++EE+I+ L K K+ + VN+ +
Sbjct: 1101 AHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGS 1145
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 209 bits (531), Expect = 4e-53
Identities = 169/574 (29%), Positives = 268/574 (46%), Gaps = 86/574 (14%)
Query: 1256 RGREKERDFIQQMMDPSKAKPFKLPVAIKAT---LRKYQQDGVNWLAFLNKYHLHGILCD 1312
+GR+++R +D +K K PV +K L +Q +GV+WL + + IL D
Sbjct: 236 KGRQRDRP--APTIDLNK-KYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILAD 292
Query: 1313 DMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPT 1372
+MGLGKT+QT+ + Y + R T +WE+E + ++P
Sbjct: 293 EMGLGKTIQTVVFL----------YSLFKEGHCRGPFLISVPLSTLT-NWERELELWAPE 341
Query: 1373 LNVLVYAGGPSVRYPLQG------QVPTA-----------DIVVTSYDVARNDVDFLKKY 1415
L + Y GG + R ++ +V T ++++TSY+ D FL
Sbjct: 342 LYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCI 401
Query: 1416 DYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLG 1475
D+ V+DE H ++++QSK + + ++L+LTGTP+QNN+ EL+ L +FL G
Sbjct: 402 DWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFN 461
Query: 1476 TEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKI 1535
+ FQ F + + H+ + P MLRRLK +VL +PPK
Sbjct: 462 DLQTFQAEFTDVSKEEQVKRL---------------HEILEPHMLRRLKADVLKSMPPKS 506
Query: 1536 IQDYYCELSDLQKQLYNDFVKKQ-KNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSL 1594
ELS +QK+ Y + K K + +K + N + +RK CNHP L
Sbjct: 507 EFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLN------IMMDLRKCCNHPYL 560
Query: 1595 VLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSID 1654
+++ ++ +S +G L+++ K G D+ K K D
Sbjct: 561 FPSAAE------EATISPSG--LYEMSSLTKAS-----------GKLDLLSKMLKQLKAD 601
Query: 1655 NVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSI 1714
N HRVL+F Q+ ML+++E+ L + + R+DGS+ RQK + +FN+ S
Sbjct: 602 N----HRVLLFSQMTKMLNVLEHFLEGE---GYQYDRIDGSIKGDLRQKAIDRFNDPVSE 654
Query: 1715 D-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKG 1773
ADTVI + DWNP ND+QA RAHR+GQKK V +YR +T
Sbjct: 655 HFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHN 714
Query: 1774 TLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTH 1807
++EE+IM + K KM + +V G+G M T+
Sbjct: 715 SVEERIMQVAKHKMMLTHLVV---RPGMGGMTTN 745
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 208 bits (530), Expect = 6e-53
Identities = 157/539 (29%), Positives = 249/539 (46%), Gaps = 68/539 (12%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR+YQ +G+NWL F + IL D+MGLGKT+Q+I + S+ +LR
Sbjct: 459 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFL-SEIFLRGIH---------- 507
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRY---------------PLQGQ 1391
+WE+EF+ ++ +N +VY G R PL G
Sbjct: 508 -GPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSG- 564
Query: 1392 VPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLT 1451
V +V+T++++ D LKK ++ ++DE H +KN KL + +KL+ H+++LT
Sbjct: 565 VFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLT 624
Query: 1452 GTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXX 1511
GTP+QN+V EL+SL +FL P +E F E F + K S
Sbjct: 625 GTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTEEQVKKLQS------------- 671
Query: 1512 HKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAE 1571
+ P MLRRLK++V +L PK EL+++QK+ Y ++K + + K A
Sbjct: 672 --ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKG----AN 725
Query: 1572 VENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKT 1631
N ++ + +RK CNHP L+ + + ++ + D D ++A
Sbjct: 726 QHNMPNLINTMMELRKCCNHPYLINGAEE---KILEDFRKTHSPDAPDFQLQAMIQAAGK 782
Query: 1632 LLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMR 1691
L+L ++K K + H+VLIF Q+ LD++E+ L+++ T+ R
Sbjct: 783 LVL--------IDKLLPK-----LIAGGHKVLIFSQMVRCLDILEDYLIQRR---YTYER 826
Query: 1692 LDGSVDSRDRQKVVRKF-NEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
+DG V RQ + +F D ADT I + DWNP NDLQ
Sbjct: 827 IDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 886
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQL 1809
A R HR+GQ K V VYR+IT+ + E ++ K+ + ++ N G+ QL
Sbjct: 887 AQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQL 945
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 207 bits (527), Expect = 1e-52
Identities = 154/552 (27%), Positives = 247/552 (43%), Gaps = 89/552 (16%)
Query: 1279 LPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
+P I L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + S + S+ YK
Sbjct: 377 IPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHF--SKMYK 434
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVY--AGGPSVRYPLQGQVPTAD 1396
+ W +E Q++ P +V + + S QG+ +D
Sbjct: 435 PS----------IIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKASESD 484
Query: 1397 ----------------------------------IVVTSYDVARNDVDFLKKYDYNYCVL 1422
+++T+Y+ R + L ++ Y VL
Sbjct: 485 YDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVL 544
Query: 1423 DEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQE 1482
DEGH I+N S + K + + HR+++TG PIQN + ELWSLFDF+ PG LG +F+
Sbjct: 545 DEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEA 604
Query: 1483 RFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCE 1542
F+ PI + S ++P++LRR+K +V + L K +C
Sbjct: 605 EFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCS 664
Query: 1543 LSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQ 1602
L+ Q+ Y F+ + VE+ + N+ ++ + MRK+CNHP L L H
Sbjct: 665 LTVEQRSTYRAFLASSE--VEQIFDG-----NRNSLY-GIDVMRKICNHPDL-LEREH-- 713
Query: 1603 FQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRV 1662
S D + + K++ + +L V K+ HRV
Sbjct: 714 --------SHQNPDYGNPERSGKMKVVAEVL--------KVWKQQG-----------HRV 746
Query: 1663 LIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXX 1722
L+F Q + MLD++E+ L+ ++ R+DG + R ++ +FN +
Sbjct: 747 LLFSQTQQMLDILESFLVAN---EYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTK 803
Query: 1723 XXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGL 1782
A+ VI + DWNP ND+QA +RA R+GQKK V VYR+IT+GT+EEK+
Sbjct: 804 VGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHR 863
Query: 1783 QKFKMNIASTIV 1794
Q +K + + I+
Sbjct: 864 QIYKHFLTNKIL 875
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 206 bits (523), Expect = 4e-52
Identities = 163/557 (29%), Positives = 251/557 (44%), Gaps = 85/557 (15%)
Query: 1282 AIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQ 1341
A TL YQ +G+NWL F IL D+MGLGKT+QT + S YK+
Sbjct: 721 ATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSL-------YKEGH 773
Query: 1342 SEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD----- 1396
S+ +WE+EF+ ++P + V+ Y G R ++ + +
Sbjct: 774 SKGPFLVSAPLSTII----NWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIR 829
Query: 1397 -----------------IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAV 1439
+++TSY++ D+ L D+ ++DE H +KN+QSK + +
Sbjct: 830 GGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVL 889
Query: 1440 KLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSK 1499
+ H+L+LTGTP+QNN+ EL+ L +FL P + F E FA + K
Sbjct: 890 NGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKL--- 946
Query: 1500 XXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQK 1559
H + P MLRRLK +V ++P K ELS +QK+ Y K
Sbjct: 947 ------------HDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYY-------K 987
Query: 1560 NVVEKDIE--NTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDL 1617
++ ++ E N N+ + + ++K CNHP L F + +
Sbjct: 988 YILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYL--------FPVAAMEAPKMPNGM 1039
Query: 1618 HDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVEN 1677
+D G A + K LLL+ K KN HRVLIF Q+ MLD++E+
Sbjct: 1040 YD-GSALIRASGKLLLLQ----------KMLKNLKEGG----HRVLIFSQMTKMLDLLED 1084
Query: 1678 DLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTV 1736
L + + R+DG + RQ+ + +FN + C ADTV
Sbjct: 1085 FLEHE---GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTV 1141
Query: 1737 IFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
I + DWNP ND+QA RAHR+GQ K V +YR +T+ ++EE+I + K KM + +V
Sbjct: 1142 IIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRP 1201
Query: 1797 -QNAGLGSMNTHQLLDL 1812
+ GSM+ +L D+
Sbjct: 1202 GLGSKTGSMSKQELDDI 1218
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 204 bits (520), Expect = 8e-52
Identities = 129/425 (30%), Positives = 215/425 (50%), Gaps = 44/425 (10%)
Query: 1392 VPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLT 1451
V I++T+Y R D L K + Y VLDEGH I+N S+++ K + +++R++L+
Sbjct: 438 VTDGHILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILS 497
Query: 1452 GTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXX 1511
GTPIQNN+ ELWSLFDF+ PG LGT +FQ++F PI + ++
Sbjct: 498 GTPIQNNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVAL 557
Query: 1512 HKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAE 1571
+ P++LRR+K +V DLP K +C+L+ Q+ Y +F+ + +
Sbjct: 558 RDLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHS---------SDLNQ 608
Query: 1572 VEN-KQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALK 1630
++N K+++ + +RK+CNHP L+ + + D D + K++ +K
Sbjct: 609 IQNGKRNVLFGIDILRKICNHPDLLDRDT-----------KRHNPDYGDPKRSGKMQVVK 657
Query: 1631 TLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKK--HLPSVT 1688
LLL + K ++ L+F Q + MLD++E + K L +
Sbjct: 658 QLLL--------LWHKQG-----------YKALLFTQSRQMLDILEEFISTKDPDLSHLN 698
Query: 1689 FMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMND 1748
++R+DG+ + + RQ +V +FN + S D A+ +I + DWNP D
Sbjct: 699 YLRMDGTTNIKGRQSLVDRFNNE-SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTD 757
Query: 1749 LQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQ 1808
+QA +RA R+GQK+ V++YR++ G++EEKI Q FK + + I+ H+
Sbjct: 758 MQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQ-KRFFKIHE 816
Query: 1809 LLDLF 1813
L DLF
Sbjct: 817 LHDLF 821
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 204 bits (520), Expect = 8e-52
Identities = 157/545 (28%), Positives = 262/545 (47%), Gaps = 61/545 (11%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
L+ YQ G+NWL L + L GIL D+MGLGKT QTI + +K
Sbjct: 387 LQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFS------------LLMDKNI 434
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGP----SVRYPLQGQVPTADIVVTSY 1402
+W +EF ++ P L + +Y G +R + + ++++T+Y
Sbjct: 435 NGPHLVIAPASTMENWLREFAKFCPKLKIELYYGSQVEREEIRERINSNKDSYNVMLTTY 494
Query: 1403 DVA---RNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNV 1459
+A + D FL+ +N CV DEGH +KN S+ + + I ++ R++LTGTP+QNN+
Sbjct: 495 RLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNL 554
Query: 1460 VELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL-PF 1518
EL SL F++P + + I + + S S K ++ PF
Sbjct: 555 KELISLLAFILPHVFD----YGLKSLDVIFTMKKSPESDFERALLSEQRVSRAKMMMAPF 610
Query: 1519 MLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQ-------KNVVEKDIENTAE 1571
+LRR K +VL LP K +CE S+ +++ Y+DF KQ +NV++ +++ A
Sbjct: 611 VLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENVMKTNLDTNAN 670
Query: 1572 VENKQHIFQ-ALQYMRKLCNHPSL--------VLNS------SHPQFQQVQS-------- 1608
+ K+ L +RKL +HP L +L + PQ+++
Sbjct: 671 LAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEPQYKKANELYIFEDMQ 730
Query: 1609 YLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQL 1668
Y+S ++LH++ K ++ + L+ + + + K + V + RV++F Q
Sbjct: 731 YMSD--IELHNL--CCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDRVVLFSQF 786
Query: 1669 KDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXX 1728
+LD+++ L+ K L ++ F+R DGS RQ ++ +F D SI+
Sbjct: 787 TQVLDILQ--LVMKSL-NLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGI 843
Query: 1729 XXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMN 1788
A+ VI + +NP +DLQA DRAHR+GQKK V VY+ + K T+EE I L K+
Sbjct: 844 NLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIA 903
Query: 1789 IASTI 1793
+ +T+
Sbjct: 904 LDATL 908
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 204 bits (518), Expect = 1e-51
Identities = 155/546 (28%), Positives = 254/546 (46%), Gaps = 74/546 (13%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR +Q GVNW+A+L + +GIL D+MGLGKT+QT+ ++ YL +
Sbjct: 375 LRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLS---YLAHS--------LRQ 423
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQG--------QVPTADIV 1398
W++ ++ +N + Y G + R ++ Q +++
Sbjct: 424 HGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLL 483
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNN 1458
+T+Y+ D L + Y +DE H +KNS+S L +A+ +++RL++TGTP+QNN
Sbjct: 484 LTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNN 543
Query: 1459 VVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPF 1518
+ EL +L DFLMPG F+ R + + + + + + P+
Sbjct: 544 IRELAALVDFLMPG------KFEIREEINLEAPDEEQEA---------YIRSLQEHLQPY 588
Query: 1519 MLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHI 1578
+LRRLK++V LP K + ELSDLQ Y + + + V+ + I + +++ +
Sbjct: 589 ILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQIS----L 644
Query: 1579 FQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGI 1638
+ ++K NHP L Q++ S + E LK L++ G
Sbjct: 645 LNIVVELKKASNHPYLFDGVEESWMQKINS-------------QGRRDEVLKGLIMNSG- 690
Query: 1639 GIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLD 1693
K +D ++S+ HRVLIF Q+ MLD++ + L + P RLD
Sbjct: 691 ----------KMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPH---QRLD 737
Query: 1694 GSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAM 1752
G+V + R+ + FN S D ADTVI + DWNP DLQAM
Sbjct: 738 GTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAM 797
Query: 1753 DRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDL 1812
RAHR+GQK V VYR+++K T+EE ++ + KM + I+ + G+ + D
Sbjct: 798 ARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAII---SLGVTDKQKNSKNDK 854
Query: 1813 FDADNI 1818
F A+ +
Sbjct: 855 FSAEEL 860
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 204 bits (518), Expect = 1e-51
Identities = 163/586 (27%), Positives = 262/586 (43%), Gaps = 75/586 (12%)
Query: 1253 ELLRGREKERDFIQQM-MDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHG-IL 1310
E L RE E + +++ D K LR+YQ +GVNWL F N Y++ IL
Sbjct: 364 EKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLF-NWYNMRNCIL 422
Query: 1311 CDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYS 1370
D+MGLGKT+Q+I + + YL K +WE+EF+ ++
Sbjct: 423 ADEMGLGKTIQSITFLY-EIYL-----------KGIHGPFLVIAPLSTIPNWEREFRTWT 470
Query: 1371 PTLNVLVYAGGPSVRYPLQ----------GQVPTADI----VVTSYDVARNDVDFLKKYD 1416
LNV+VY G + R +Q G+V ++T++++ D L+
Sbjct: 471 E-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIP 529
Query: 1417 YNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGT 1476
+ V+DE H +KN KL + +K+++ H+++LTGTP+QN V EL+SL FL P +
Sbjct: 530 WRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPS 589
Query: 1477 EKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKII 1536
E F + F + K + + P MLRRLKE+V +L PK
Sbjct: 590 ETTFMQEFGDLKTEEQVQKLQA---------------ILKPMMLRRLKEDVEKNLAPKEE 634
Query: 1537 QDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVL 1596
EL+++QK+ Y ++K + K N ++ + +RK CNHP L+
Sbjct: 635 TIIEVELTNIQKKYYRAILEKNFTFLSKG----GGQANVPNLLNTMMELRKCCNHPYLIN 690
Query: 1597 NSSHPQFQQVQSYLSQTGMDLH---DIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSI 1653
+ ++ + + D I A KL + LL + G
Sbjct: 691 GAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAG-------------- 736
Query: 1654 DNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE-DP 1712
HRVLIF Q+ LD++E+ L+++ P + R+DG V RQ + +F++ D
Sbjct: 737 -----GHRVLIFSQMVRCLDILEDYLIQRRYP---YERIDGRVRGNLRQAAIDRFSKPDS 788
Query: 1713 SIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITK 1772
ADT I + DWNP NDLQA R HR+GQ K V +YR+IT+
Sbjct: 789 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 848
Query: 1773 GTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDADNI 1818
+ E ++ K+ + ++ + + N Q L + +++
Sbjct: 849 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 894
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 203 bits (517), Expect = 2e-51
Identities = 167/580 (28%), Positives = 261/580 (44%), Gaps = 72/580 (12%)
Query: 1281 VAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKT 1340
+A L+ YQ GVNWL L + L GIL D+MGLGKT Q + A
Sbjct: 544 LASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFA------------L 591
Query: 1341 QSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGP----SVRYPLQGQVPTAD 1396
E+ +W +E ++ P+L V Y G ++R ++ D
Sbjct: 592 LLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERANIREAIEENEIKYD 651
Query: 1397 IVVTSYDVARN---DVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGT 1453
I+VT+Y +A N D FLK +++ CV DEGH +KN S+ K + +N+N RL+LTGT
Sbjct: 652 ILVTTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGT 711
Query: 1454 PIQNNVVELWSLFDFLMPGFLGTEK-----MFQERFAKPIASSRNSKTSSKXXXXXXXXX 1508
P+QNN+ EL SL F++P ++ +F+ AKP A + +
Sbjct: 712 PLQNNLKELVSLLAFILPNMFDSDMDDLDVIFK---AKPTADA-----DIEQALLSKQRI 763
Query: 1509 XXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVV------ 1562
+ PF+LRR K +VL+DLP K +C+LS+ Q ++YN + QKN
Sbjct: 764 SRAKTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDK 823
Query: 1563 -EKDIENTAEVENKQ-HIFQALQYMRKLCNHPSLV--------LNSSHPQFQQVQSYLS- 1611
K +N E + K L +RK NH L L Q + Y +
Sbjct: 824 RNKRSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNA 883
Query: 1612 -----------QTGMDLHDIGHA-PKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQ 1659
+ +LH + + P L++ TL + + + P + S
Sbjct: 884 NEQYIYEDMEVMSDFELHRLCRSFPTLQSY-TLKDDPWMDSGKIRVLKELLPKMKEEGS- 941
Query: 1660 HRVLIFCQLKDMLDMVEN--DLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCX 1717
R+L+F Q MLD++E D LK ++++RLDGS RQ ++ +F+++ +
Sbjct: 942 -RILLFSQFTQMLDILEQVLDTLK-----ISYVRLDGSTQVEVRQDIIDQFHKEEDVTVF 995
Query: 1718 XXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEE 1777
A+ VI + +NP +DLQA DRAHR+GQ + V V R+IT T+EE
Sbjct: 996 LLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEE 1055
Query: 1778 KIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDADN 1817
I L K+ + ++ + + + D+ D +N
Sbjct: 1056 YIQKLANTKLALDMSL-SSDGKDREEIGERLVQDMLDEEN 1094
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 202 bits (513), Expect = 5e-51
Identities = 178/599 (29%), Positives = 269/599 (44%), Gaps = 100/599 (16%)
Query: 1250 LSEELLRGREKERDFIQQ------MMDPSKAKPFKLPVAIKAT---LRKYQQDGVNWLAF 1300
L + LL+ +K RD Q+ ++DP+ K K P I +T L YQ +G+NWL F
Sbjct: 655 LPKRLLKKGKKLRDDKQEKPPDTPIVDPT-VKFDKQPWYIDSTGGTLHPYQLEGLNWLRF 713
Query: 1301 LNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTG 1360
IL D+MGLGKT+QTI + S YK+ S+
Sbjct: 714 SWAQGTDTILADEMGLGKTVQTIVFLYS-------LYKEGHSKGPYLVSAPLSTII---- 762
Query: 1361 HWEQEFQQYSPTLNVLVYAGGPSVR---------------------YPLQGQVPTA-DIV 1398
+WE+EF+ ++P V+ Y G R + ++ +V ++
Sbjct: 763 NWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVL 822
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNN 1458
+TSY++ D L ++ V+DE H +KN+QSK + + +++L+LTGTP+QNN
Sbjct: 823 LTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNN 882
Query: 1459 VVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPF 1518
+ EL+ L +FL P + F E FA + K H + P
Sbjct: 883 LEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKK---------------LHDLLGPH 927
Query: 1519 MLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIE--NTAEVENKQ 1576
MLRRLK +V ++P K ELS +QK+ Y K ++ ++ E N+ N+
Sbjct: 928 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-------KFILTRNFEALNSKGGGNQV 980
Query: 1577 HIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLEC 1636
+ + ++K CNHP L P L D G + + K +LL
Sbjct: 981 SLLNIMMDLKKCCNHPYL-----FPVAAVEAPVLPNGSYD----GSSLVKSSGKLMLL-- 1029
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSV 1696
Q + KK HRVLIF Q+ MLD++E+ L + R+DG +
Sbjct: 1030 ----QKMLKKLRD--------EGHRVLIFSQMTKMLDLLEDFL---EYEGYKYERIDGGI 1074
Query: 1697 DSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRA 1755
RQ+ + +FN + C ADTVI + DWNP ND+QA RA
Sbjct: 1075 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 1134
Query: 1756 HRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMN---THQLLD 1811
HR+GQ K V +YR +T+ ++EE+I + K KM + +V GLGS + T Q LD
Sbjct: 1135 HRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV---RPGLGSKSGSMTKQELD 1190
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 201 bits (511), Expect = 9e-51
Identities = 158/566 (27%), Positives = 259/566 (44%), Gaps = 82/566 (14%)
Query: 1271 PSKAKPFKLPVAIKA-TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASD 1329
P K K P IK +R +Q G+NW+A+L + +GIL D+MGLGKT+QT+C ++
Sbjct: 373 PPYRKLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLS-- 430
Query: 1330 QYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQ 1389
YL S K W++ ++P LN + Y G R ++
Sbjct: 431 -YL-------VHSLKQHGPFLIVVPLSTVPA-WQETLANWTPDLNSICYTGNTESRANIR 481
Query: 1390 ---------GQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVK 1440
+ +I++T+Y+ D L + Y +DE H +KNS+S L + +
Sbjct: 482 EYEFYLSTNSRKLKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLS 541
Query: 1441 LINSNHRLVLTGTPIQNNVVELWSLFDFLMPG--FLGTEKMFQERFAKPIASSRNSKTSS 1498
+ +RL++TGTP+QNN+ EL SL +FLMPG ++ E F + A+ R+
Sbjct: 542 QFRTANRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELNFDQPNAEQERDIRD----- 596
Query: 1499 KXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQ 1558
+++ PF+LRRLK++V LP K + ELSD+Q + Y + + K
Sbjct: 597 ------------LQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKN 644
Query: 1559 KNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLH 1618
+ + ++ + + ++K+ NHP L ++ + ++ M
Sbjct: 645 YRALTGHTDGRGQLS----LLNIVVELKKVSNHPYLFPGAA-------EKWMMGRKMTRE 693
Query: 1619 DIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLD 1673
D ++ + S K +D ++ + HRVLIF Q+ ML+
Sbjct: 694 DT-------------------LRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLN 734
Query: 1674 MVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXX 1732
++ + L + RLDG++ + R+ + FN S D
Sbjct: 735 ILGEYM---SLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNT 791
Query: 1733 ADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
ADTVI + DWNP DLQAM RAHR+GQK VNVYR ++K T+EE I+ + KM +
Sbjct: 792 ADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYA 851
Query: 1793 IVNQQNAGLGSMNTHQLLDLFDADNI 1818
I+ + G+ + + D +DA +
Sbjct: 852 II---SLGVTEKSKNSKNDKYDAQEL 874
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 201 bits (510), Expect = 1e-50
Identities = 160/557 (28%), Positives = 246/557 (43%), Gaps = 85/557 (15%)
Query: 1282 AIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQ 1341
A TL YQ +G+NWL F IL D+MGLGKT+QTI + S L E + K
Sbjct: 731 ATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS---LYKEGHTKGP 787
Query: 1342 SEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD----- 1396
+WE+EFQ ++P V+ Y G R ++ + +
Sbjct: 788 --------FLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIK 839
Query: 1397 -----------------IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAV 1439
+++TSY++ D L + V+DE H +KN+QSK + +
Sbjct: 840 GGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVL 899
Query: 1440 KLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSK 1499
+H+L+LTGTP+QNN+ EL+ L +FL P + F E FA + K
Sbjct: 900 NGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKK---- 955
Query: 1500 XXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQK 1559
H + P MLRRLK +V ++P K ELS +QK+ Y K
Sbjct: 956 -----------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYY-------K 997
Query: 1560 NVVEKDIE--NTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDL 1617
++ ++ E N+ N+ + + ++K CNHP L + + ++ S + G +
Sbjct: 998 YILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALI 1056
Query: 1618 HDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVEN 1677
G L+ + L E G HRVLIF Q+ MLD++E+
Sbjct: 1057 KSSGKLMLLQKMLRKLKEQG----------------------HRVLIFSQMTKMLDLLED 1094
Query: 1678 DLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTV 1736
L + R+DG + RQ+ + +FN + C ADTV
Sbjct: 1095 FL---DYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTV 1151
Query: 1737 IFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
I + DWNP ND+QA RAHR+GQ V +YR +T+ ++EE+I + K KM + +V
Sbjct: 1152 IIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRP 1211
Query: 1797 -QNAGLGSMNTHQLLDL 1812
+ GSM+ +L D+
Sbjct: 1212 GLGSKAGSMSKQELDDI 1228
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 200 bits (509), Expect = 2e-50
Identities = 152/529 (28%), Positives = 245/529 (45%), Gaps = 79/529 (14%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR +Q G+NW+AFL +GIL D+MGLGKT+QT+ I+ + R ++
Sbjct: 376 LRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN---------- 425
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQV----PTA------- 1395
W F++++P LN + Y G R ++ P A
Sbjct: 426 -GPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMK 484
Query: 1396 -DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTP 1454
++++T+Y+ D L + + +DE H +KN++S L +++ +R+++TGTP
Sbjct: 485 FNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTP 544
Query: 1455 IQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQ 1514
+QNN+ EL +L +FLMPG RF ++ + H++
Sbjct: 545 LQNNIKELAALVNFLMPG----------RFTIDQEIDFENQDEEQEEYIHDL-----HRR 589
Query: 1515 VLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVEN 1574
+ PF+LRRLK++V LP K + ELSD+Q + Y KN++ K+
Sbjct: 590 IQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYY-------KNILTKNYSALTAGAK 642
Query: 1575 KQH--IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTL 1632
H + + ++K NHP L N+ Q+ G + L+ L
Sbjct: 643 GGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD------------GKMTRENVLRGL 690
Query: 1633 LLECGIGIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDLLKKHLPSV 1687
++ G K +D ++++ HRVLIF Q+ MLD++ + L K +
Sbjct: 691 IMSSG-----------KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK---GI 736
Query: 1688 TFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPM 1746
F RLDG+V S R+ + FN S D ADTV+ + DWNP
Sbjct: 737 NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQ 796
Query: 1747 NDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN 1795
DLQAM RAHR+GQK V VYR+++K T+EE+++ + KM + I++
Sbjct: 797 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIIS 845
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 200 bits (509), Expect = 2e-50
Identities = 149/538 (27%), Positives = 251/538 (45%), Gaps = 76/538 (14%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR+YQ +GVNWL F + IL D+MGLGKT+Q+I + ++ +
Sbjct: 183 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFL-----------QEVYNVGIH 231
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQ-----------VPTA 1395
T +WE+EF ++ +N +VY G + R +Q +P A
Sbjct: 232 GPFLVIAPLSTIT-NWEREFNTWTE-MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGA 289
Query: 1396 ---DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTG 1452
D ++T++++ +D L++ ++ ++DE H +KN KL ++K ++ H+++LTG
Sbjct: 290 YKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTG 349
Query: 1453 TPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXH 1512
TP+QN V EL+SL FL P +E F + F + K +
Sbjct: 350 TPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQA-------------- 395
Query: 1513 KQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEV 1572
+ P MLRRLKE+V +L PK EL+++QK+ Y ++K + + K +T
Sbjct: 396 -ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHT--- 451
Query: 1573 ENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTL 1632
N ++ + +RK CNHP L+ + + L++ H I H L+A+
Sbjct: 452 -NMPNLLNTMMELRKCCNHPYLINGAE-------EKILTEFREACHIIPHDFHLQAM--- 500
Query: 1633 LLECGIGIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDLLKKHLPSV 1687
+ + K ID ++ + H+VLIF Q+ LD++E+ L+++
Sbjct: 501 -----------VRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRR---Y 546
Query: 1688 TFMRLDGSVDSRDRQKVVRKFNE-DPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPM 1746
+ R+DG V RQ + +F++ D ADT I + DWNP
Sbjct: 547 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 606
Query: 1747 NDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSM 1804
NDLQA R HR+GQ K V VYR+IT+ + E ++ K+ + ++ + G++
Sbjct: 607 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 664
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 200 bits (509), Expect = 2e-50
Identities = 153/526 (29%), Positives = 237/526 (44%), Gaps = 96/526 (18%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR YQ G+NWL L + ++GIL D++ G + +
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEIP-GPHMVLV----------------------- 218
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVR--YPLQGQVPTA-DIVVTSYD 1403
+W EF+++ P+L V+ + G R + +P D+ VTSY+
Sbjct: 219 --------PKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYE 270
Query: 1404 VARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELW 1463
+ + KK+ + Y V+DE H IKN +SKL++ V+ S +RL+LTGTP+QNN+ ELW
Sbjct: 271 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 330
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRL 1523
+L +FL+P + F F +K H + PF+LRR+
Sbjct: 331 ALLNFLLPDVFNSADDFDSWF------------DTKNCLGDQKLVERLHAVLKPFLLRRI 378
Query: 1524 KEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQ 1583
K +V LPPK Y LS +Q++ Y + K + D+ N++ +K + L
Sbjct: 379 KTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-----DIDVLNSSGKMDKMRLLNILM 433
Query: 1584 YMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDV 1643
+RK CNHP L F + T D H + ++ K+ L LL +
Sbjct: 434 QLRKCCNHPYL--------FDGAEPGPPYT-TDEHIVSNSGKMVVLDKLLAKL------K 478
Query: 1644 EKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQ- 1702
E+ S RVLIF Q+ +LD++E+ + + + RLDG +R+
Sbjct: 479 EQGS-------------RVLIFSQMTRLLDILEDYCMWR---GYEYCRLDGQTPHEERED 522
Query: 1703 -----------KVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
+ + FN + S AD VI + DWNP DLQ
Sbjct: 523 KFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 582
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
AMDRAHR+GQKK V V+R+IT T+EE+I+ + K+ + S ++ Q
Sbjct: 583 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ 628
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 198 bits (504), Expect = 6e-50
Identities = 159/562 (28%), Positives = 252/562 (44%), Gaps = 76/562 (13%)
Query: 1274 AKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLR 1333
+KP+K+ + L K+QQ+GV WL + GIL D+MGLGKT+Q++ + S Q
Sbjct: 181 SKPWKVNAGVWNKLHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETA 240
Query: 1334 SEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLV------------YAGG 1381
YK T + W +E Q+ P V + Y G
Sbjct: 241 RTHYKTTGLD-----TALIVCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDYVG- 294
Query: 1382 PSVRYPLQG---QVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKA 1438
S+ LQ + P I++T+Y + + K+ + +LDEGH I+N +K + A
Sbjct: 295 -SIFRKLQRRRKEYPDGAIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNENTKCSIA 353
Query: 1439 VKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSS 1498
++ + + R +LTGTP QN + E W L DF+ PG L F F I + N S
Sbjct: 354 MRKLMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAGANLNCSP 413
Query: 1499 KXXXXXXXXXXXXHKQVLPFMLRRLKE---EVLSDLPPKIIQDYYCELSDLQKQLYNDFV 1555
+ H V P +LRRL+E EVL LP K CELS Q++LY ++
Sbjct: 414 EAAAKAYECLVALHIAVKPLILRRLQEDHKEVL-QLPEKQEIVLSCELSKRQRRLYMEYG 472
Query: 1556 KK-QKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLV--LNSSHPQFQQVQSYLSQ 1612
Q N + +E + F + ++ +CNHP + L+ + P+F ++
Sbjct: 473 NSHQVNEI---------IERRLKAFVGINHLTNICNHPGIYRSLSPASPKFGSIK----- 518
Query: 1613 TGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDML 1672
D G +E + D KS N RV++F Q + ++
Sbjct: 519 ------DSGK-----------VEMTFKLFDDWFKSPTN----------RVILFTQRRTVI 551
Query: 1673 DMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXX 1732
M+E L +K + V+ L G+ + R K+++KF +D SI
Sbjct: 552 TMMEYFLAEKGIKCVS---LTGADSAAARPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTC 608
Query: 1733 ADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
A+ VI + DWNP D QA +R +R+GQ V +YR+++ GT+E+ Q K N+A+
Sbjct: 609 ANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIYRLVSNGTIEDLKFFKQVQKENLAAR 668
Query: 1793 IVNQQNAGLGS-MNTHQLLDLF 1813
+++ NA + + + L DLF
Sbjct: 669 LLH--NAEIDQFVPNNTLADLF 688
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 198 bits (503), Expect = 8e-50
Identities = 161/584 (27%), Positives = 254/584 (42%), Gaps = 89/584 (15%)
Query: 1245 AAPVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKY 1304
A +G E+ + R K+R+ I + F L YQ +G+NWL
Sbjct: 576 AKGLGPKEDEVTSRRKKREKIDILKKYEVQPDFISETG--GNLHPYQLEGINWLRHCWSN 633
Query: 1305 HLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQ 1364
IL D+MGLGKT+Q++ + + L E + K +WE+
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYT---LMKEGHTKGP--------FLIAAPLSTIINWER 682
Query: 1365 EFQQYSPTLNVLVYAGGPSVRY-----------------PLQGQVPTAD-----IVVTSY 1402
E + + P V+ Y G R P ++ T + +++TSY
Sbjct: 683 EAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSY 742
Query: 1403 DVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVEL 1462
+ D L D+ V+DE H +KN+QS K ++ N +R++LTGTP+QNN+ EL
Sbjct: 743 ECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEEL 802
Query: 1463 WSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRR 1522
+ L +FL P + F F++ + K H + P MLRR
Sbjct: 803 FHLLNFLAPDRFNQLESFTAEFSEISKEDQIEK---------------LHNLLGPHMLRR 847
Query: 1523 LKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIE--NTAEVENKQHIFQ 1580
LK +VL+ +P K ELS +QK+ Y KN++ ++ + N + +
Sbjct: 848 LKADVLTGMPSKQELIVRVELSAMQKKYY-------KNILTRNFDALNVKNGGTQMSLIN 900
Query: 1581 ALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGI 1640
+ ++K CNHP L + + + + + I +A K L+ +L + G
Sbjct: 901 IIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSAL----IKNAGKFVLLQKMLRKLKDG- 955
Query: 1641 QDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRD 1700
HRVLIF Q+ MLD++E+ + + R+DGS+ +
Sbjct: 956 ------------------GHRVLIFSQMTMMLDILEDFC---DVEGYKYERIDGSITGQQ 994
Query: 1701 RQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLG 1759
RQ + ++N + ADTVI + DWNP ND+QA RAHRLG
Sbjct: 995 RQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLG 1054
Query: 1760 QKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGS 1803
QK V +YR +TKG++EE+I + K KM + +V AGLG+
Sbjct: 1055 QKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVV---RAGLGA 1095
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 196 bits (497), Expect = 4e-49
Identities = 158/554 (28%), Positives = 259/554 (46%), Gaps = 76/554 (13%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
L+ YQ GVN+L L K + G IL D+MGLGKT+Q I + L ++
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDP--------- 263
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQ-------GQVPTADIV 1398
+WE+E +++ P+ VL Y G Y + G+ P +++
Sbjct: 264 --GPHLVVCPASVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVL 321
Query: 1399 VTSYDV-------ARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLI--NSNHRLV 1449
+ Y + ++D LK++ ++ ++DE H +K+ S K + + N+N RL+
Sbjct: 322 LVCYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLM 381
Query: 1450 LTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXX 1509
LTGTP+QN++ ELWSL +F++P TE + K + ++ +++ ++
Sbjct: 382 LTGTPLQNDLHELWSLLEFMLPDIFTTENV----DLKKLLNAEDTELITRM--------- 428
Query: 1510 XXHKQVL-PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQK--------N 1560
K +L PF+LRRLK +V+ L PKI + Y + Q+ Y + +++ +
Sbjct: 429 ---KSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQARLVK 485
Query: 1561 VVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLN-SSHPQFQQVQSYLSQTGMDLHD 1619
+ K + + A+ K+ I RK+ NHP L+ S ++ L G +
Sbjct: 486 LSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSDEDVIRIARKLHPIGAFGFE 545
Query: 1620 IGHAPKLEALK--------TLLLECGIG-----IQDVE-KKSNKNPSIDNVI-----SQH 1660
+E +K LL + G+ + D S K ++ ++ S H
Sbjct: 546 CSLDRVIEEVKGFNDFRIHQLLFQYGVNDTKGTLSDKHVMLSAKCRTLAELLPSMKKSGH 605
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXX 1720
RVLIF Q MLD++E L + VT+ RLDGS DRQ +V FN D SI
Sbjct: 606 RVLIFSQWTSMLDILEWTL---DVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLS 662
Query: 1721 XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIM 1780
ADTVI + D+NP D QA DR HR+GQ K V ++R++TK T++E I
Sbjct: 663 TRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIY 722
Query: 1781 GLQKFKMNIASTIV 1794
+ K K+ + + ++
Sbjct: 723 EIAKRKLVLDAAVL 736
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 194 bits (492), Expect = 1e-48
Identities = 167/625 (26%), Positives = 278/625 (43%), Gaps = 87/625 (13%)
Query: 1276 PFKLPVAIKA-TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRS 1334
P +LP+ + TL YQ GV WL + L+ IL D+MGLGKT+Q + ++ YL+
Sbjct: 382 PLQLPLLKEGCTLHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLS---YLK- 437
Query: 1335 EDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPS----VRYPLQG 1390
Q KT +W EF ++ P++ +L Y G +R+ ++
Sbjct: 438 ------QIGKTGPHLIVVPSSTIE--NWIGEFHKWCPSIQLLTYYGSQDERKHLRHRVKK 489
Query: 1391 QVPTADIVVTSYDVARNDVD---FLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHR 1447
Q D+++T+Y++ + D F K + NY + DEGH++KN S+ + + + +
Sbjct: 490 QKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKK 549
Query: 1448 LVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIA------SSRNSKTSSKXX 1501
++LTGTP+QNN++EL SL F++ K+F ++ + I +K
Sbjct: 550 ILLTGTPLQNNLIELISLMYFVL------SKVFN-KYCEDITHLLQHFKQLGPALDTKNK 602
Query: 1502 XXXXXXXXXXHKQVL-PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKN 1560
K +L P++LRRLK +VL LP K Q E+ QKQLY++ V+ +
Sbjct: 603 ALYQQDRIEEAKAILQPYILRRLKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEALQQ 662
Query: 1561 VVE-----------KDIENTAEVENKQHIFQALQYMRK-LCNHPSLVLNSSHPQFQQVQS 1608
E + N + ++ Q L + K LC + + +
Sbjct: 663 SEESGDSYGSLMRLRQAANHPLLRRSEYTDQKLDKIAKMLCLREKAYADKKWQHVSEDLA 722
Query: 1609 YLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQ-----HRVL 1663
+LS + +H + + LL + + KS K +D ++ + +VL
Sbjct: 723 WLSD--IKIHQL--CERFRCTSKFLLN-----EQLALKSGKCEQLDVMLPEIQKKGDKVL 773
Query: 1664 IFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXX 1723
IF Q MLD++E L ++ ++ RLDG DRQ+++ +FN +
Sbjct: 774 IFSQFTSMLDILEVYL---NIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRA 830
Query: 1724 XXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQ 1783
A+ +I + D+NP ND QA DR HR+GQ+K V+V R+++KGT+E ++ L
Sbjct: 831 GGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALA 890
Query: 1784 KFKMNIASTIVNQQNAGLGSMN----------------THQLLDLFDADNIPSQXXXXXX 1827
K K+ + + + L ++ + DLF + NIP
Sbjct: 891 KKKLQLEKQVTDGVKGQLDEVHFIENFKFLLEEIEIYRKFRKFDLFKSPNIPE------- 943
Query: 1828 XXXXXXANESGLTGKAKEAVGELKE 1852
N TGK K A+ ELKE
Sbjct: 944 IQKKKSKNSDFFTGK-KYALRELKE 967
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 192 bits (488), Expect = 4e-48
Identities = 154/599 (25%), Positives = 265/599 (43%), Gaps = 76/599 (12%)
Query: 1249 GLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHG 1308
G E L+ E I + P +P +I L ++Q++GV ++ L K + G
Sbjct: 113 GPYEPLMLSSIGEIPIIHVIFLPKSLTFAHVPASINCRLLEHQREGVKFMYNLYKNNHGG 172
Query: 1309 ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQ 1368
IL DDMGLGKT+QTI +A+ Y + D ++ ++ +WE EF +
Sbjct: 173 ILGDDMGLGKTIQTIAFLAA-VYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSR 231
Query: 1369 YSPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHII 1428
++ V VY G + + +++VTS+D R L ++ + DE H +
Sbjct: 232 WASFFKVSVYHGSNRDMILEKLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRL 291
Query: 1429 KNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPI 1488
KN +SKL +A I + R+ LTGT +QN + EL++LF+++ PG LGT + F++ + +P+
Sbjct: 292 KNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPL 351
Query: 1489 ASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDL-PPKIIQDYYCELSDLQ 1547
+ + + + +MLRR KEE + L K +C++S LQ
Sbjct: 352 KLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQ 411
Query: 1548 KQLYNDFVK--KQKNVVEKDIENTAEVENKQH---------------------------- 1577
+++Y ++ + + +V KD KQ
Sbjct: 412 RRVYQRMIQLPEIQCLVNKDNPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCDSCP 471
Query: 1578 ---IFQALQYMRKLCNHPSLVLNS--SHPQFQQVQSYL-----------------SQTGM 1615
+ L ++++ NH L+ + P+ Q+ + S++ M
Sbjct: 472 FCLVLPCLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFM 531
Query: 1616 DLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMV 1675
DL D+ H K+ AL+ L+ + ++L+F MLD++
Sbjct: 532 DLSDVKHCGKMRALEKLMASW-------------------ISKGDKILLFSYSVRMLDIL 572
Query: 1676 ENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADT 1735
E L++K +F RLDGS + RQ +V FN PS A+
Sbjct: 573 EKFLIRK---GYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANR 629
Query: 1736 VIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
V+ + +WNP +DLQA DR+ R GQK+ V V+R+++ G+LEE + Q +K +++ V
Sbjct: 630 VVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAV 688
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 191 bits (485), Expect = 1e-47
Identities = 152/541 (28%), Positives = 244/541 (45%), Gaps = 56/541 (10%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
L YQ G+NWL ++K ++GIL D+MGLGKT+Q I +A YL+ +
Sbjct: 289 LADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLA---YLKENGLSQA------ 339
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA-----DIVVTS 1401
+WE E ++ P L V Y G R ++G+ D+++T+
Sbjct: 340 --AHLIVVPSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTT 397
Query: 1402 YDVARNDVDFLKKY---DYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNN 1458
Y + + + K + +Y + DE H++KN ++ + IN+ R++LTGTP+QNN
Sbjct: 398 YHIVGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNN 457
Query: 1459 VVELWSLFDFLMPGFLGTE-KMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
++EL SL F+MP F + + FAK S + S+ K P
Sbjct: 458 LLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMK---P 514
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEV--ENK 1575
F+LRRLK++VL +LP K+ +S QK Y++ V N N EV ++
Sbjct: 515 FVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYYSN-------NKGEVCSSSE 567
Query: 1576 QHIFQALQYMRKLCNHPSLV--------LNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLE 1627
+ + MR++ NHP L+ L + S+ + + +
Sbjct: 568 RAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFE--ELAVMS 625
Query: 1628 ALKTLLLECGIGIQDVEKKSN------KNPSIDNVISQ-----HRVLIFCQLKDMLDMVE 1676
+ + DV+ N K +D ++ + HRVL+F Q MLD+VE
Sbjct: 626 DFQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVE 685
Query: 1677 NDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTV 1736
L + F RLDG+ RQ ++ FN D SI ADT
Sbjct: 686 EYL---RIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTC 742
Query: 1737 IFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
+ + D+NP ND QA DR HR+GQ++ V +YR+I++ T+EE I+ + K+ + I +
Sbjct: 743 VIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLEKDITSN 802
Query: 1797 Q 1797
+
Sbjct: 803 E 803
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 191 bits (484), Expect = 1e-47
Identities = 161/541 (29%), Positives = 242/541 (43%), Gaps = 87/541 (16%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
L YQ +G+NWL IL D+MGLGKT+Q++ + S L E + K
Sbjct: 602 LHPYQLEGLNWLRHCWSNGTDAILADEMGLGKTVQSLTFLYS---LMKEGHCKGP----- 653
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPL--------QGQV---PTA 1395
+WE+E +Q+ P V+ Y G R L +G V P A
Sbjct: 654 ---FLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKA 710
Query: 1396 D-----------IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINS 1444
+++TSY+ D L ++ V+DE H +KN+QS K +
Sbjct: 711 SKMKTTENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTI 770
Query: 1445 NHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXX 1504
++R++LTGTP+QNN+ EL+ L +FL +ERF + A + SK
Sbjct: 771 HYRVLLTGTPLQNNLEELFHLLNFLS----------KERFNQLEAFTAEFNEISK----- 815
Query: 1505 XXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEK 1564
H + P MLRRLK +VL+ +P K ELS +QK+ Y KN++ +
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWY-------KNILTR 868
Query: 1565 DIE--NTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGH 1622
+ + N + + L ++K CNHP L + + ++ T + I +
Sbjct: 869 NFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTAL----IKN 924
Query: 1623 APKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKK 1682
+ K L+ +L + G HRVLIF Q+ MLD++E DL +
Sbjct: 925 SGKFVLLQKMLRKLKDG-------------------GHRVLIFSQMTRMLDIME-DLCE- 963
Query: 1683 HLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEH 1741
+ R+DGS+ + RQ + ++N + ADTVI +
Sbjct: 964 -YEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDS 1022
Query: 1742 DWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGL 1801
DWNP ND+QA RAHRLGQK V +YR +TK ++EEKI + K KM + +V AGL
Sbjct: 1023 DWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVV---RAGL 1079
Query: 1802 G 1802
G
Sbjct: 1080 G 1080
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 188 bits (478), Expect = 6e-47
Identities = 153/517 (29%), Positives = 234/517 (44%), Gaps = 71/517 (13%)
Query: 1286 TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
TLR YQ G+ W+ L L+GIL D+MGLGKT+Q + +IA YL K
Sbjct: 33 TLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA---YL--------MEFKG 81
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA--DIVVTSYD 1403
+W+ E + P+++ + Y G R L QV +++VT+Y+
Sbjct: 82 NYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKFEKFNVLVTTYE 141
Query: 1404 VARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELW 1463
D L K D+ Y ++DE +K+ +S LA+ + RL+LTGTP+QN++ ELW
Sbjct: 142 FIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 201
Query: 1464 SLFDFLMPGFLGTEKMFQERFAKPI---ASSRNSKTSSKXXXXXXXXXXXXHKQVLPFML 1520
SL + L+P K F + FA+P + N + H+ + PFML
Sbjct: 202 SLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFML 261
Query: 1521 RRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNV-VEKDIENTAEVENKQHIF 1579
RR E+V LP K+ C +S +Q +Y D++K + V+ D E +N I+
Sbjct: 262 RRRVEDVEGSLPAKVSVVLRCRMSAIQSAVY-DWIKATGTLRVDPDDEKLRAQKNP--IY 318
Query: 1580 QALQY---------MRKLCNHPSLVLNSSHPQFQQV-QSYLSQTGMDLHDIGHAPKLEAL 1629
QA Y +RK CNHP L ++P F + +L + KL L
Sbjct: 319 QAKIYRTLNNRCMELRKACNHPLL----NYPYFNDFSKDFL---------VRSCGKLWIL 365
Query: 1630 KTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTF 1689
+L++ + HRVL+F + +LD++E L + L +
Sbjct: 366 DRILIKL-------------------QRTGHRVLLFSTMTKLLDILEEYLQWRRL---VY 403
Query: 1690 MRLDGSVDSRDRQKVVRKFNEDPSIDC--XXXXXXXXXXXXXXXXADTVIFVEHDWNPMN 1747
R+DG+ DR+ + FN DP DC ADTV+ + D NP N
Sbjct: 404 RRIDGTTSLEDRESAIVDFN-DPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKN 462
Query: 1748 DLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQK 1784
+ QA+ RAHR+GQ + V ++I + EK+ QK
Sbjct: 463 EEQAVARAHRIGQTREV---KVIYMEAVVEKLSSHQK 496
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 185 bits (470), Expect = 5e-46
Identities = 143/543 (26%), Positives = 243/543 (44%), Gaps = 78/543 (14%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTR 1346
LR+YQ +G+NWL Y I+ D+MGLGKT+Q++ I + DY T
Sbjct: 302 LREYQLEGLNWLLNRWYYKQSCIMADEMGLGKTVQSVTFI--NTLFTKYDYCAPVLVVTP 359
Query: 1347 XXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQG----------QVPTAD 1396
HWE+EF+ ++ L VL Y R + ++ D
Sbjct: 360 LSIIP---------HWEREFEAWTD-LRVLKYHENRPGRALIAEYEFVLKKNNLEIRLFD 409
Query: 1397 IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
+++T+YD + + L ++ ++ + DE H +KN++SK A ++ + NH+++L+GTP+Q
Sbjct: 410 VLITTYDTVMAEQEHLSQFHFSVGIFDEAHRLKNAKSKAATILRTLKFNHKVLLSGTPLQ 469
Query: 1457 NNVVELWSLFDFL-------MPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXX 1509
NN+ ELWSL +F+ +P FLG KM N K
Sbjct: 470 NNISELWSLLNFIDPMRFSSLPHFLGEFKM------------ENINDVEKLQGL------ 511
Query: 1510 XXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENT 1569
+ P MLRR+KE+V +P K L+ +QK+ Y + ++EK+IE
Sbjct: 512 -----LRPLMLRRMKEDVEKSIPTKEETIIEVALTMIQKRFY-------RAILEKNIEFL 559
Query: 1570 AE--VENKQHIFQALQYMRKLCNHPSLVLNSSHP-------------QFQQVQSYLSQTG 1614
+ E+ ++ + +RK C HP L+ + + + ++ ++ T
Sbjct: 560 TKGGKESAPNLLNVMMELRKCCIHPYLIKGAEEQILSGYLKKKRERSKAEGAENDITLTS 619
Query: 1615 MDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDM 1674
L++ H + + I IQ K + + + H+VLIF Q+ LD+
Sbjct: 620 EVLNEDEHQDGNSVISDIDEYYKIFIQSSGKLVLLDKLLGKLKDGHKVLIFSQMTRCLDL 679
Query: 1675 VENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXA 1733
+ L + + R+DG + +RQ + +F++ S + A
Sbjct: 680 LAEYLAYR---KYKYERIDGGARTENRQAAIDRFSDKTSDVFVFLLSTRAGGVGINLTAA 736
Query: 1734 DTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTI 1793
DTVI + DWNP NDLQA R HR+GQ V VYR++T+ T E ++ K+ + +
Sbjct: 737 DTVIIFDSDWNPQNDLQAQARCHRIGQTSEVKVYRLVTENTYEREMFDKAGLKLGLDRAV 796
Query: 1794 VNQ 1796
+ +
Sbjct: 797 LQK 799
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 184 bits (468), Expect = 9e-46
Identities = 160/592 (27%), Positives = 264/592 (44%), Gaps = 63/592 (10%)
Query: 1246 APVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWL----AFL 1301
AP LSE +K+R + + DP K LR +Q+DGV ++ +
Sbjct: 172 APEHLSEHAQLKEDKDRK-VHVVADPVVGK----------ILRPHQRDGVKFMWDCVTGI 220
Query: 1302 NKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTG 1360
N HG I+ D+MGLGKTLQ I ++ + +S D T S+
Sbjct: 221 NIPEFHGCIMADEMGLGKTLQCISLLWT-LLRQSPDACPTVSKSI------IVCPSSLVK 273
Query: 1361 HWEQEFQQYSPT-LNVLVYAGGPSVRYPLQGQVPTAD--------IVVTSYDVARNDVDF 1411
+W++E +++ T LN + G + AD +++ SY+ R +
Sbjct: 274 NWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCAIPVLIISYETFRLYANI 333
Query: 1412 LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMP 1471
L D + DEGH +KNS++ +A+ + R++++GTPIQN+++E +SL +F+ P
Sbjct: 334 LHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNP 393
Query: 1472 GFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDL 1531
G LGT F+++F I R++ SS+ V ++RR + L
Sbjct: 394 GLLGTASEFRKKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYL 453
Query: 1532 PPKIIQDYYCELSDLQKQLYNDFV--KKQKNVVEKDIENTAEVENKQHIFQALQYMRKLC 1589
P K C+ S LQ+ LYN + +KQ +VEKD TA + +++KLC
Sbjct: 454 PVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDKGATASA------LSFITHLKKLC 507
Query: 1590 NHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNK 1649
NHP LV + +FQ+ + + + PK S K
Sbjct: 508 NHPYLV----YDEFQKPDNRFRNKCLSIFPESFNPK---------------SFDPSFSGK 548
Query: 1650 NPSIDNVISQHRVLI---FCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVR 1706
+D +++ R F + + ++ + L F+RLDGS+ + R K+V
Sbjct: 549 MKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVD 608
Query: 1707 KFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVN 1765
FN+ S I C A+ ++ + DWNP ND QAM R R GQKK+
Sbjct: 609 TFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCF 668
Query: 1766 VYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDADN 1817
+YR++ G++EEK+ Q K ++S +V+ ++ QL +LF ++
Sbjct: 669 IYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQLRELFKLES 720
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 183 bits (465), Expect = 2e-45
Identities = 158/574 (27%), Positives = 264/574 (45%), Gaps = 62/574 (10%)
Query: 1270 DPSKAKPFKLPVAI------KATLRKYQQDGVNWL-AFLNKYHLHG----ILCDDMGLGK 1318
D K KLPV + LR +Q++GV +L + + G I+ D+MGLGK
Sbjct: 130 DQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGK 189
Query: 1319 TLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY-SPTLNVLV 1377
TLQ CI LR K + +K +W E ++ + L
Sbjct: 190 TLQ--CITLMWTLLRQSPECKPEIDKA-----VVVSPSSLVKNWYNEVGKWLGGRIQPLA 242
Query: 1378 YAGGPS--VRYPLQGQVP------TADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIK 1429
GG + L+G + ++ I++ SY+ R V L+K + DEGH +K
Sbjct: 243 IDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLK 302
Query: 1430 NSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIA 1489
NS+++ +A+ +N++ R++++GTPIQN+++E +SL F+ G LGT F++ F PI
Sbjct: 303 NSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPIL 362
Query: 1490 SSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQ 1549
R++ S V ++RR + + LP KI Q C L+ LQ +
Sbjct: 363 KGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTE 422
Query: 1550 LYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSY 1609
LY F+++ K E+ +E V + ++ ++KLCNHP+L+ + ++ +
Sbjct: 423 LYKRFLRQAK-PAEELLEGKMSVSS----LSSITSLKKLCNHPALIYDKC---VEEEDGF 474
Query: 1610 LSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVI------SQHRVL 1663
+ +DL G++ K AL+ L S K +D ++ S +V+
Sbjct: 475 VG--ALDLFPPGYSSK--ALEPQL-------------SGKMLVLDYILAVTRSRSSDKVV 517
Query: 1664 IFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXX 1722
+ LD+ E + ++RLDG++ + R KVV +FN S D
Sbjct: 518 LVSNYTQTLDLFEKLCRARR---YLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574
Query: 1723 XXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGL 1782
A+ ++ + DWNP ND QAM R R GQKK +YR+++ GT+EEKI
Sbjct: 575 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQR 634
Query: 1783 QKFKMNIASTIVNQQNAGLGSMNTHQLLDLFDAD 1816
Q K ++S +V+++ + +L +LF D
Sbjct: 635 QSHKKALSSCVVDEEQDVERHFSLGELKELFILD 668
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 179 bits (453), Expect = 5e-44
Identities = 119/372 (31%), Positives = 179/372 (47%), Gaps = 40/372 (10%)
Query: 1245 AAPVGLSEELLRGREKERDFIQQMMDPSKAK---------PFKLPVAIKATLRKYQQDGV 1295
AA + + + + + RD I+ + + ++ K +P ++ LR YQ+ G+
Sbjct: 645 AATFERAGDFVHTQNENRDDIKDVEEDAETKVQEEQLSVVDVPVPSLLRGNLRTYQKQGL 704
Query: 1296 NWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXX 1355
NWLA L H +GIL D+MGLGKT+QTI ++A YL E K
Sbjct: 705 NWLASLYNNHTNGILADEMGLGKTIQTISLLA---YLACE--------KENWGPHLIVVP 753
Query: 1356 XXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD---IVVTSYDVARNDVDFL 1412
+WE EF++++P VL Y G P R + D + + SY + D
Sbjct: 754 TSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSF 813
Query: 1413 KKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMP- 1471
K+ + Y VLDE H IKN +S +A+ N+ RL+LTGTP+QNN+ ELWSL FLMP
Sbjct: 814 KRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQ 873
Query: 1472 ---------GFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRR 1522
GF + FQ+ F +P+ + + H+ + P++LRR
Sbjct: 874 TVIDGKKVSGFADLD-AFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRR 932
Query: 1523 LKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQAL 1582
LK +V +P K YC+LS Q+ LY+DF+ + + + T N I L
Sbjct: 933 LKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQT------KATLASGNFMSIVNCL 986
Query: 1583 QYMRKLCNHPSL 1594
+RK+CNHP+L
Sbjct: 987 MQLRKVCNHPNL 998
Score = 91.7 bits (226), Expect = 1e-17
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 1660 HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXX 1719
HR LIF Q+ +LD++E L + +MRLDG+ DRQ + +FN D I
Sbjct: 1263 HRALIFTQMTKVLDVLEQFL---NYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFIL 1319
Query: 1720 XXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKI 1779
ADTVIF + DWNP D Q DR HR+GQ + V++YR +++ T+E I
Sbjct: 1320 SSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNI 1379
Query: 1780 MGLQKFKMNIASTIVNQ 1796
+ K + + ++ +
Sbjct: 1380 LKKANQKRQLDNVVIQE 1396
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 178 bits (451), Expect = 8e-44
Identities = 109/315 (34%), Positives = 164/315 (51%), Gaps = 31/315 (9%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P +K TL++YQ G+NWL L ++GIL DDMGLGKT+Q+I ++A +E+
Sbjct: 268 PSILKCTLKEYQLRGLNWLVSLYDKGINGILADDMGLGKTVQSISLLA--HLYETEEVPG 325
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTADIVV 1399
T +W QEF ++ P+ V ++G PS R L+ + +D+V+
Sbjct: 326 PFLVVT---------ISSTLDNWAQEFARFLPSFRVCRFSGSPSERKELKKRFKNSDVVI 376
Query: 1400 TSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNV 1459
T+Y A +D LKK + Y +LDE IK+S S+ K + + +RL+LTGTPIQN++
Sbjct: 377 TTYQTAVSDEKMLKKIKWQYMILDEAQAIKSSMSRRWKTLLSFKARNRLLLTGTPIQNSM 436
Query: 1460 VELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFM 1519
ELW+L F+MP + F + F+K I +S K + H + PFM
Sbjct: 437 QELWALLHFIMPTLFDSLNEFSDWFSKEIETSAIMKKT-----VDEKSLQRLHAILKPFM 491
Query: 1520 LRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIF 1579
LRR K +V+ +L K D YC+LS QK LY + + ++ E+EN
Sbjct: 492 LRRHKSDVIHELGQKTQIDLYCDLSYRQKVLYKEITRSCSSM---------EMEN----- 537
Query: 1580 QALQYMRKLCNHPSL 1594
L ++K+CNHP L
Sbjct: 538 -LLMQLKKVCNHPDL 551
Score = 100 bits (248), Expect = 3e-20
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 1660 HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXX 1719
HR+L++ Q+ M+D++E+ L++K T++RLDGS+ + R +V+R +
Sbjct: 743 HRLLMYFQMTRMIDLIEDYLVRK---GYTYLRLDGSLKASARAEVIRDWQASDKF-IFLL 798
Query: 1720 XXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKI 1779
ADTV+F + DWNP D QAMDRAHRLGQ + V VYR+IT+GT+EEK+
Sbjct: 799 STRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 858
Query: 1780 MGLQKFKMNIASTIVN 1795
+ K I +++
Sbjct: 859 LESANRKDEIQKMVIH 874
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 174 bits (442), Expect = 9e-43
Identities = 158/562 (28%), Positives = 242/562 (42%), Gaps = 90/562 (16%)
Query: 1259 EKERDFIQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHG---ILCDDMG 1315
EKE F D S+ + ATL+ +Q +GV+WL + KY L + D MG
Sbjct: 30 EKEAKFSNTPPDCSE-------FGVTATLKPHQVEGVSWL--IQKYLLGVNVVLELDQMG 80
Query: 1316 LGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNV 1375
LGKTLQ I ++ YL+ + T W E +++P L V
Sbjct: 81 LGKTLQAISFLS---YLKFR--------QGLPGPFLVLCPLSVTDGWVSEINRFTPNLEV 129
Query: 1376 LVYAGGPSVRYPLQ------GQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIK 1429
L Y G R ++ G D+++T+YD+A D DFL + + Y ++DE +K
Sbjct: 130 LRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLK 189
Query: 1430 NSQSKLAKAV-KLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPI 1488
N S L + + RL++TGTPIQNN+ ELW+L F MP GT F F
Sbjct: 190 NPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAF---- 245
Query: 1489 ASSRNSKTSSKXXXXXXXXXXXXHKQVL-PFMLRRLKEEVLSD----LPPKIIQDYYCEL 1543
+T K +L FMLRR K ++ LPP L
Sbjct: 246 -----KETGDGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPL 300
Query: 1544 SDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQF 1603
LQK++Y ++K+ + +E ++ N + + +RK C+HP L F
Sbjct: 301 VSLQKKIYTSILRKE---LPGLLELSSGGSNHTSLQNIVIQLRKACSHPYLFPGIEPEPF 357
Query: 1604 QQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVL 1663
++ + + +G KL L LL + D S HRVL
Sbjct: 358 EEGEHLVQASG----------KLLVLDQLLKR----LHD---------------SGHRVL 388
Query: 1664 IFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE------DPSID-- 1715
+F Q+ LD++++ + L ++ RLDGSV + +R ++ F+ D +D
Sbjct: 389 LFSQMTSTLDILQDFM---ELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGS 445
Query: 1716 ---CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITK 1772
ADTVIF E DWNP D QA+ RAHR+GQ V ++T+
Sbjct: 446 NAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTE 505
Query: 1773 GTLEEKIMGLQKFKMNIASTIV 1794
++EE I+ + K+ ++ +V
Sbjct: 506 HSVEEVILRRAERKLQLSHNVV 527
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 174 bits (440), Expect = 2e-42
Identities = 143/525 (27%), Positives = 241/525 (45%), Gaps = 42/525 (8%)
Query: 1287 LRKYQQDGVNWL-AFLNKYHLHG----ILCDDMGLGKTLQTICIIASDQ----YLRSEDY 1337
LR +Q++G+ +L + ++G IL D+MGLGKTLQ I +I + Q Y
Sbjct: 194 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 253
Query: 1338 KKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTADI 1397
KKT +W++EFQ++ + + ++ + + +
Sbjct: 254 KKT----------LIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSV 303
Query: 1398 VVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQN 1457
++ SY++ +D +K ++ + DEGH +KNS K A+ ++ R++LTGTPIQN
Sbjct: 304 LIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQN 363
Query: 1458 NVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
++ E ++L DF+ PG LG+ +++ + +PI SR S +
Sbjct: 364 DLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGL 423
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
F+LRR +E + LPPKI +C LQ +LY + Q VV ++ +EN H
Sbjct: 424 FILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQ--VVRFCLQGL--LENSPH 479
Query: 1578 IFQALQYMRKLCNHPSLVLNS------SHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKT 1631
+ + ++KLCNHP L+ NS S + + L + + + + P L K
Sbjct: 480 LI-CIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEK- 537
Query: 1632 LLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMR 1691
E G ++ S I + +V++ L++++ ++ K+H + R
Sbjct: 538 ---ESG----KLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQ-EVCKRH--GYAYTR 587
Query: 1692 LDGSVDSRDRQKVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQ 1750
LDG RQ++V FN + S +I + DWNP D+Q
Sbjct: 588 LDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQ 647
Query: 1751 AMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN 1795
AM R R GQK V++YR++T GT+EEKI Q K + +V+
Sbjct: 648 AMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVD 692
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 173 bits (439), Expect = 2e-42
Identities = 141/529 (26%), Positives = 235/529 (43%), Gaps = 83/529 (15%)
Query: 1286 TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
TL YQ G+NWL H IL D+MGLGKT+Q I I+ Y +
Sbjct: 555 TLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFY------------RH 602
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVR-----YPLQGQ-----VPTA 1395
+ +WE+E ++++P L + V G R Y L Q V T
Sbjct: 603 KCFPVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTH 662
Query: 1396 DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPI 1455
+V+++ +V R ++ L+K+ + ++DEG +KN QS L + + S+ +L+LTGTP+
Sbjct: 663 VLVISASNVER-EISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPL 721
Query: 1456 QNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQV 1515
QNNV EL++L FL P + ++ + H+ +
Sbjct: 722 QNNVRELFNLLQFLNPMKINAAEL-----------------EKRYSIIDTEKVTELHQIL 764
Query: 1516 LPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQ----KNVVEKDIENTAE 1571
PF LRR+K EVL + P K+ ++ +QK LY + K +N+ +++
Sbjct: 765 KPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSG 824
Query: 1572 VENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKT 1631
+ + L +RK HP + ++P +E
Sbjct: 825 GQRTTSLNNILMQLRKTLAHPYI---------------------------YSPDIEDRN- 856
Query: 1632 LLLECGIGIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDLLKKHLPS 1686
L + ++ +E+ S K + ++ + HR+L+F Q LD++E+ K +
Sbjct: 857 --LPYELAMRSLEEASCKFLILRLLVPKLITRGHRILLFSQFIQQLDILEDWFEYK---N 911
Query: 1687 VTFMRLDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNP 1745
+ + R DG+ +RQ + FN S + C ADTVI ++ D+NP
Sbjct: 912 IAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASADTVIILDPDFNP 971
Query: 1746 MNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV 1794
D+QA+ RAHR GQKK V V+ + T+ ++EEKI+ + K+ + IV
Sbjct: 972 HQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIV 1020
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 173 bits (438), Expect = 3e-42
Identities = 143/529 (27%), Positives = 229/529 (43%), Gaps = 60/529 (11%)
Query: 1309 ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQ 1368
I+ D+MGLGKTLQ CI LR K +K +W E +
Sbjct: 332 IMADEMGLGKTLQ--CIALMWTLLRQGPQGKRLIDKC-----IIVCPSSLVNNWANELIK 384
Query: 1369 Y--SPTLNVLVYAGGPSVR--------------YPLQGQVPTADIVVTSYDVARNDVDFL 1412
+ TL L G S QG+ +++ SY+ R +VD L
Sbjct: 385 WLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQL 444
Query: 1413 KKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPG 1472
K + + DEGH +KN S A+ I+ R++L+GTPIQN++ E ++L F PG
Sbjct: 445 KNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPG 504
Query: 1473 FLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLP 1532
LG+ F++ F PI R++ + K V F++RR + + LP
Sbjct: 505 LLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDILAKYLP 564
Query: 1533 PKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHP 1592
K + L LQ +LYN +K ++++ + +A+ ++KLCNHP
Sbjct: 565 CKYEHVIFVNLKPLQNELYNKLIK------SREVKKVVKGVGGSQPLRAIGILKKLCNHP 618
Query: 1593 SLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPS 1652
+L+ F+ + + ++L D + P G +DV+ K + S
Sbjct: 619 NLL------NFE--DEFDDEDDLELPDDYNMP------------GSKARDVQTKYSAKFS 658
Query: 1653 I-------DNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVV 1705
I S ++++ LD++E KH +V RLDG++ RQK+V
Sbjct: 659 ILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAV---RLDGTMSINKRQKLV 715
Query: 1706 RKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVV 1764
+FN+ + A+ +I ++ DWNP D QA+ R R GQKK
Sbjct: 716 DRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDC 775
Query: 1765 NVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLF 1813
+YR I+ GT+EEKI Q KM+++S +V+ + ++ L LF
Sbjct: 776 FIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLF 824
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 171 bits (433), Expect = 1e-41
Identities = 152/568 (26%), Positives = 262/568 (45%), Gaps = 53/568 (9%)
Query: 1269 MDPSKAKPFKLPVAIKAT-LRKYQQDGVNWLAFL---NKYHLHG-ILCDDMGLGKTLQTI 1323
MDP+K + + + LR +Q++GV ++ + + +G I+ D+MGLGKTLQ +
Sbjct: 137 MDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCV 196
Query: 1324 CIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY-SPTLNVLVYAGGP 1382
++ + LR K K +WE+EF ++ L L GG
Sbjct: 197 TLVWT--LLRQGPECKPTINKA-----IVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGT 249
Query: 1383 ---SVRYPLQGQVPTA----DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKL 1435
++R Q + +A +++ SY+ R + L KY+ + DEGH +KNS +
Sbjct: 250 KENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLT 309
Query: 1436 AKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSK 1495
+A+ + + R++L+GTPIQN++ E +SL +F+ P LGT +F+ F I +N+
Sbjct: 310 YQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTD 369
Query: 1496 TSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFV 1555
++ + V ++RR + + LP K +L+ +Q +LY +F+
Sbjct: 370 STEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFL 429
Query: 1556 KKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLV---LNSSHPQFQQVQSYL-- 1610
K + V + + + E + + + ++K+C+HP L+ L + F+ Q+ L
Sbjct: 430 KSDQ--VRRSLADCNEKASLTALAD-ITTLKKICSHPDLIYEKLTAREKGFENSQNVLPS 486
Query: 1611 SQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKD 1670
+ DL+ P+L K +LL+ + E +V++
Sbjct: 487 NYKPKDLN-----PELSG-KFMLLDFMLAAIRAE-------------GNDKVVLISNYTQ 527
Query: 1671 MLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXX--XX 1728
LD+ E K+ F+RLDG++ + R KVV +FN DP D
Sbjct: 528 TLDLFEQLARKR---KYGFVRLDGTMSIKKRSKVVDRFN-DPESDSFLFMLSSKAGGCGL 583
Query: 1729 XXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMN 1788
A+ + + DWNP ND QAM R R GQKK +YR++ G++EEKI+ Q K +
Sbjct: 584 NLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKS 643
Query: 1789 IASTIVNQQNAGLGSMNTHQLLDLFDAD 1816
++STI++ + L DLF D
Sbjct: 644 LSSTIIDNNESAEKHFTRDDLKDLFTFD 671
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26 (contains
SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 171 bits (432), Expect = 1e-41
Identities = 143/537 (26%), Positives = 235/537 (43%), Gaps = 83/537 (15%)
Query: 1277 FKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSED 1336
+ LP I L +Q++G+NWL L+ GIL DDMGLGKT+Q +A + +
Sbjct: 367 YTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIK 426
Query: 1337 YKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSV--RYPLQGQVPT 1394
+ KT HW +E + Y G + Y L +
Sbjct: 427 RALVVAPKT------------LLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQG 474
Query: 1395 ADIVVTSYDVARNDVDFLKKYDY------------NYCVLDEGHIIKNSQSKLAKAVKLI 1442
I++T+YD+ RN+ L+ D+ +Y +LDEGH+IKN ++ AK++ I
Sbjct: 475 KGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEI 534
Query: 1443 NSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXX 1502
S+HR++++GTPIQNN+ L + F++ + I + + +
Sbjct: 535 PSSHRIIISGTPIQNNLKAL-------------SFNRFKQNYEHYILRGTDKNATDREQR 581
Query: 1503 XXXXXXXXXHKQVLPFMLRRLKEEVLSD------LPPKIIQDYYCELSDLQKQLYNDFVK 1556
+ + PF LRRLK EV D L K + L+ Q+QLY F+
Sbjct: 582 IGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLN 641
Query: 1557 KQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLN-SSHPQFQQVQSYLSQTGM 1615
+ + D A AL ++K+C+HP L+ ++ + + S L+Q
Sbjct: 642 SEIVLSAFDGSPLA----------ALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQ--- 688
Query: 1616 DLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMV 1675
+ G A +L + + + D + K++ I C+L ++ ++
Sbjct: 689 --EEAGVAERL----AMHIADNVDTDDFQTKNDS--------------ISCKLSFIMSLL 728
Query: 1676 ENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADT 1735
++ + +F+R+DG+ + DR K V +F E AD
Sbjct: 729 DSLTSNGY----SFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADR 784
Query: 1736 VIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
VI V+ WNP D Q++DRA+R+GQ K V VYR++T T+EEKI Q +K + T
Sbjct: 785 VIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKT 841
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 169 bits (427), Expect = 5e-41
Identities = 144/544 (26%), Positives = 244/544 (44%), Gaps = 69/544 (12%)
Query: 1287 LRKYQQDGVNWLAFLNKYHLHG-------ILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
LR +Q++GV ++ F LHG IL DDMGLGKTLQ+I ++ + L + +
Sbjct: 76 LRPHQREGVQFM-FDCVSGLHGSANINGCILADDMGLGKTLQSITLLYT---LLCQGFDG 131
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPT----- 1394
T K +WE E +++ + + A S R + + +
Sbjct: 132 TPMVKK----AIIVTPTSLVSNWEAEIKKWVGD-RIQLIALCESTRDDVLSGIDSFTRPR 186
Query: 1395 --ADIVVTSYDVAR-NDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLT 1451
+++ SY+ R + F + + + DE H +KN Q+ +A+ + R++L+
Sbjct: 187 SALQVLIISYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLLS 246
Query: 1452 GTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXX 1511
GTP+QN++ E +++ +F PG LG F+ + PI R + +
Sbjct: 247 GTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAEL 306
Query: 1512 HKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAE 1571
+V F+LRR + + LPPKII+ C+++ LQ LYN F+ KN+ +N +
Sbjct: 307 SSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFI-SSKNLKRALADNAKQ 365
Query: 1572 VENKQHIFQALQYMRKLCNHPSLV---LNSSHP---------QFQQVQSYLSQ----TGM 1615
+ + + ++KLCNHP L+ + S +P +F + + + TG
Sbjct: 366 TK----VLAYITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGG 421
Query: 1616 DLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMV 1675
D + + K+ L LL ++ +K++ R+++ LD+
Sbjct: 422 DGAWVELSGKMHVLSRLL-------ANLRRKTD-----------DRIVLVSNYTQTLDLF 463
Query: 1676 ENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID--CXXXXXXXXXXXXXXXXA 1733
++ P F+RLDGS RQK+V + N DP+ D A
Sbjct: 464 AQLCRERRYP---FLRLDGSTTISKRQKLVNRLN-DPTKDEFAFLLSSKAGGCGLNLIGA 519
Query: 1734 DTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTI 1793
+ ++ + DWNP ND QA R R GQKK V VYR ++ GT+EEK+ Q K + I
Sbjct: 520 NRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVI 579
Query: 1794 VNQQ 1797
++Q
Sbjct: 580 QHEQ 583
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 166 bits (421), Expect = 3e-40
Identities = 146/562 (25%), Positives = 244/562 (42%), Gaps = 65/562 (11%)
Query: 1265 IQQMMDPSKAKPFKLPVAI------KATLRKYQQDGVNWL-----AFLNKYHLHGILCDD 1313
++ ++ K KP PVA+ LR +Q +GV +L +++ I+ D+
Sbjct: 236 LKDLLGIQKEKPPPPPVAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADE 295
Query: 1314 MGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY--SP 1371
MGLGKTLQ I ++ + L+ + Q+ K +W E ++
Sbjct: 296 MGLGKTLQCIALLWT--LLK----QSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKD 349
Query: 1372 TLNVLVYAGGPSVRY---------PLQGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVL 1422
+ + G S + + G+ T +++ SY+ R+ V+ L + +
Sbjct: 350 AITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLC 409
Query: 1423 DEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQE 1482
DEGH +KNS S A+ +N R++L+GTPIQN++ E +SL +F PG LG+ + F++
Sbjct: 410 DEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRK 469
Query: 1483 RFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCE 1542
+ PI R++ + K K V F++RR + + LP K +C
Sbjct: 470 NYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCN 529
Query: 1543 LSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLV-----LN 1597
LS+ Q LY F+ + + K + T K A+ ++K+CNHP L+ L
Sbjct: 530 LSEFQLSLYKHFITSPE--INKILRGTGSQPLK-----AIGLLKKICNHPDLLNLTEDLE 582
Query: 1598 SSHPQFQQVQSYLSQTGMDLH-DIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNV 1656
F G D + D + K+ L+ +L + D
Sbjct: 583 GCEALFPPGFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDD-------------- 628
Query: 1657 ISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDC 1716
++++ LD+ E + + +RLDG+++ RQ++V FN DP D
Sbjct: 629 ----KIVLISNYTSTLDLFEQLCRARGYKA---LRLDGTMNVNKRQRLVDTFN-DPEKDA 680
Query: 1717 XXXXXXXXXX--XXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGT 1774
A+ +I + DWNP D QA+ R R GQKK VYR I GT
Sbjct: 681 FVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGT 740
Query: 1775 LEEKIMGLQKFKMNIASTIVNQ 1796
+EEKI Q K +++S +V++
Sbjct: 741 IEEKIFQRQSHKQSLSSCVVDE 762
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 166 bits (421), Expect = 3e-40
Identities = 102/320 (31%), Positives = 158/320 (48%), Gaps = 25/320 (7%)
Query: 1278 KLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDY 1337
KLP +K +LR+YQ G++WL + + L+GIL D+MGLGKT+ TI ++A
Sbjct: 112 KLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAH--------- 162
Query: 1338 KKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVR-YPLQG--QVPT 1394
+K +WE EF ++ P +L Y G R QG ++ +
Sbjct: 163 --LACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNS 220
Query: 1395 ADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTP 1454
+ +T+Y + D K+ + Y +LDE H+IKN +S+ + + NS R++LTGTP
Sbjct: 221 FHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTP 280
Query: 1455 IQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQ 1514
+QN+++ELWSL FLMP + + F++ F PIA + H
Sbjct: 281 LQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQEK-----INKEVIDRLHNV 335
Query: 1515 VLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVEN 1574
+ PF+LRRLK +V LP K +C LS Q+ LY DF + + + T +
Sbjct: 336 LRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDF------IASTETQATLTSGS 389
Query: 1575 KQHIFQALQYMRKLCNHPSL 1594
+ + +RK+CNHP L
Sbjct: 390 FFGMISIIMQLRKVCNHPDL 409
Score = 103 bits (257), Expect = 3e-21
Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECG 1637
+F + Y K+ + S +L+ P + Q Y + D G KL+ L LL +
Sbjct: 617 VFLSPSYKEKVTDLLSPLLSPIRPAIVRRQVYFPDRRLIQFDCG---KLQELAMLLRKLK 673
Query: 1638 IGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVD 1697
G HR LIF Q+ MLD++E + +L T+MRLDGS
Sbjct: 674 FG-------------------GHRALIFTQMTKMLDVLEAFI---NLYGYTYMRLDGSTP 711
Query: 1698 SRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHR 1757
+RQ ++++FN +P I ADTVIF + DWNP D QA DR HR
Sbjct: 712 PEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHR 771
Query: 1758 LGQKKVVNVYRIITKGTLEEKIM 1780
+GQ + V++YR+I++ T+EE I+
Sbjct: 772 IGQTREVHIYRLISESTIEENIL 794
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 165 bits (417), Expect = 7e-40
Identities = 99/319 (31%), Positives = 157/319 (49%), Gaps = 25/319 (7%)
Query: 1279 LPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
+P I+ LR+YQ G++W+ L + +L+GIL D+MGLGKT+QTI ++A
Sbjct: 589 VPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAH---------- 638
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQG---QVPTA 1395
++ +WE EF+++ P L +L Y G R + +
Sbjct: 639 -MACSESIWGPHLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCF 697
Query: 1396 DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPI 1455
+ +TSY D+ K+ + Y +LDE IKN +S+ +A+ + + RL+LTGTP+
Sbjct: 698 HVCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPL 757
Query: 1456 QNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQV 1515
QN+++ELWSL FLMP + F++ F+ P+ HK +
Sbjct: 758 QNSLMELWSLMHFLMPTIFSSHDDFKDWFSNPLTGMMEGNME-----FNAPLIGRLHKVL 812
Query: 1516 LPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENK 1575
PF+LRRLK+EV LP K C LS Q+ LY+DF+ + + + + N
Sbjct: 813 RPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSR------RSTKENLKSGNM 866
Query: 1576 QHIFQALQYMRKLCNHPSL 1594
+ + +RK CNHP+L
Sbjct: 867 MSVLNIVMQLRKCCNHPNL 885
Score = 103 bits (258), Expect = 2e-21
Identities = 57/163 (34%), Positives = 86/163 (51%), Gaps = 8/163 (4%)
Query: 1659 QHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXX 1718
+HR LIF Q+ MLD+++ L H + RLDG+ RQ ++ +FN DP + C
Sbjct: 1255 KHRCLIFTQMSKMLDVLQT-FLSHH--GYQYFRLDGTTGVEQRQAMMERFNADPKVFCFI 1311
Query: 1719 XXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEK 1778
ADTVIF + DWNP D QA DR HR+GQ + V++YR+I++ T+EE
Sbjct: 1312 LSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEEN 1371
Query: 1779 IMGLQKFKMNIASTIVNQQNAGLGS---MNTHQLLDLFDADNI 1818
I+ K + +++ AG + + DLFD +N+
Sbjct: 1372 ILRKATQKRRLGELAIDE--AGFTPEFFKQSDSIRDLFDGENV 1412
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 164 bits (414), Expect = 2e-39
Identities = 110/336 (32%), Positives = 163/336 (47%), Gaps = 39/336 (11%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P + TL++YQ G+NWLA L ++GIL D+MGLGKT+Q+I ++A
Sbjct: 699 PKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAH----------- 747
Query: 1340 TQSEKTRXXXXXXXXXXXXTGH-WEQEFQQYSPTLNVLVYAGGPSVRYPLQ--------- 1389
+E T H W E ++ P +L Y G + R L+
Sbjct: 748 -LAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLR 806
Query: 1390 -GQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRL 1448
+ ++VTSY + D ++L+K + Y +LDE IK+SQS K + + +RL
Sbjct: 807 YNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRL 866
Query: 1449 VLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXX 1508
+LTGTPIQN++ ELW+L F+MP + F E F+K I S + T
Sbjct: 867 LLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDIESHAEANTK-----LNQQQL 921
Query: 1509 XXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIEN 1568
H + PFMLRR+K+ V S+L KI D C+L+ Q +LY +K Q + IEN
Sbjct: 922 RRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLY-QVLKSQISTNYDAIEN 980
Query: 1569 TAEVE----------NKQHIFQALQYMRKLCNHPSL 1594
A + + Q++ A+ RK+CNHP L
Sbjct: 981 AATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDL 1016
Score = 97.8 bits (242), Expect = 1e-19
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 1660 HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXX 1719
HRVLI+ Q+ M+D++E L + + RLDGS DR+ +V + +P I
Sbjct: 1316 HRVLIYFQMTKMMDLMEEYLTYRQYNHI---RLDGSSKLEDRRDLVHDWQTNPEIFVFLL 1372
Query: 1720 XXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKI 1779
ADTVIF + DWNP D QAMDRAHRLGQ + V VYR++ +GT+EE++
Sbjct: 1373 STRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLLVRGTIEERM 1432
Query: 1780 MGLQKFKMNIASTIV 1794
K K + ++
Sbjct: 1433 RDRAKQKEQVQQVVM 1447
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 164 bits (414), Expect = 2e-39
Identities = 101/319 (31%), Positives = 159/319 (49%), Gaps = 25/319 (7%)
Query: 1279 LPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
+P+ ++ LR+YQ G++WL + + L+GIL D+MGLGKT+QTI ++A
Sbjct: 413 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAH---------- 462
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVR-YPLQGQV-PTA- 1395
EK +WE E +++ P+ +L Y G R QG P A
Sbjct: 463 -LACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAF 521
Query: 1396 DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPI 1455
+ +TSY + D ++ ++ Y +LDE IKN +S+ +++ NS RL+LTGTP+
Sbjct: 522 HVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPL 581
Query: 1456 QNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQV 1515
QN+++ELWSL FLMP + + F+E F+ P+ HK +
Sbjct: 582 QNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQE-----YNEGLVKRLHKVL 636
Query: 1516 LPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENK 1575
PF+LRR+K +V +P K C LS Q+ LY+DF + + + T +
Sbjct: 637 RPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDF------MAQTTTKETLATGHF 690
Query: 1576 QHIFQALQYMRKLCNHPSL 1594
+ L +RK+CNHP+L
Sbjct: 691 MSVINILMQLRKVCNHPNL 709
Score = 100 bits (250), Expect = 2e-20
Identities = 57/156 (36%), Positives = 80/156 (50%), Gaps = 5/156 (3%)
Query: 1660 HRVLIFCQLKDMLDMVENDLLKK-HLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXX 1718
HRVLIF Q+ MLD++E L HL ++RLDGS RQ ++ +FN D I C
Sbjct: 1801 HRVLIFTQMTRMLDVLEQFLTYHGHL----YLRLDGSTRVEQRQALMERFNADKRIFCFI 1856
Query: 1719 XXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEK 1778
ADTV+F + DWNP D QA DR HR+GQ + V++YR+I++ T+EE
Sbjct: 1857 LSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEEN 1916
Query: 1779 IMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFD 1814
I+ K + + N + +LFD
Sbjct: 1917 ILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFD 1952
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 163 bits (412), Expect = 3e-39
Identities = 126/463 (27%), Positives = 214/463 (46%), Gaps = 50/463 (10%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMF 1480
V DE HIIKN+++ +A+K + R+ LTG+P+QNN++E + + DF+ GFLG+ F
Sbjct: 841 VCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEF 900
Query: 1481 QERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYY 1540
+ RF PI + ++ ++++ ++Q+ F+ R V DLPPK +
Sbjct: 901 RNRFQNPIENGQHMNSTAEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVIS 960
Query: 1541 CELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSL------ 1594
+LS LQ+ LY F++ + + + +++ F A Q + ++ NHP +
Sbjct: 961 VKLSPLQRILYQRFLE-----LYGFSDGRTDERMRKNFFAAYQVLAQILNHPGIPQLRSE 1015
Query: 1595 ----------------VLNSSHPQFQQVQSYLSQTGMDLHD--IGHAPKLEALKTLLLEC 1636
+ + + V +T DL D G+ K + LL +
Sbjct: 1016 DSKNGRRGSIVDIPDDCSSDENIDYNMVTGEKQRTMNDLQDKVDGYLQK-DWWVDLLQKN 1074
Query: 1637 GIGIQDVEKKSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDL--LKKHLPSVTF 1689
+ D S K + +++S + L+F Q LD++E L + +H F
Sbjct: 1075 NYKVSDF---SGKMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKF 1131
Query: 1690 -------MRLDGSVDSRDRQKVVRKFNE--DPSIDCXXXXXXXXXXXXXXXXADTVIFVE 1740
R+DG +S +RQK+V +FNE + + C A+ VI V+
Sbjct: 1132 WKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVD 1191
Query: 1741 HDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAG 1800
WNP DLQA+ RA R GQKK V YR++ +GT+EEKI Q K +A+ +V++Q
Sbjct: 1192 GSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVVDRQQVH 1251
Query: 1801 LGSMNTHQLLDLFDADNIPSQXXXXXXXXXXXXANESGLTGKA 1843
+++ ++L LF+ D+ + A S L +A
Sbjct: 1252 -RTISKEEMLHLFEFDDDDEKSEAVTEISKQNEAGHSNLVEQA 1293
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 162 bits (411), Expect = 4e-39
Identities = 146/539 (27%), Positives = 250/539 (46%), Gaps = 77/539 (14%)
Query: 1309 ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXT-------GH 1361
+L DDMGLGKTL +I +I + +R + S G+
Sbjct: 343 LLADDMGLGKTLMSITLIWT--LIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGN 400
Query: 1362 WEQEFQQYS--PTLNVLVYAGGPS-------VRYPLQGQVPTADIVVTSYDVARNDVDFL 1412
W++EF ++ + VL + S VR L+ Q T +++ Y+ + + L
Sbjct: 401 WKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQ-RTYQVLIIGYEKLLSVSEEL 459
Query: 1413 KKYDY--NYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLM 1470
+K + + V DEGH +KN SK+ +K ++ +L+LTGTPIQN++ E +++ DF+
Sbjct: 460 EKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFIN 519
Query: 1471 PGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP----FMLRRLKEE 1526
PG LG+ F+ RF PI +R+ T+++ K+++ F+LRR
Sbjct: 520 PGILGSFASFKRRFIIPITRARD--TANRYNEELLEKGEERSKEMIEITKRFILRRTNAI 577
Query: 1527 VLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQA----L 1582
+ LPPK +C+ Q+ + KDI A ++ Q F + +
Sbjct: 578 LEKYLPPKTDIILFCK------------PYSQQILAFKDILQGARLDFGQLTFSSSLGLI 625
Query: 1583 QYMRKLCNHPSLVLNSSHPQFQQVQSYLSQT-GMDLHDIG-HAPKLEALKTLLLECGIGI 1640
++K+CN P LV S P + +S++ T D + ++ KL+ L TLL
Sbjct: 626 TLLKKVCNSPGLV--GSDPYY---KSHIKDTQSQDSYSRSLNSGKLKVLMTLL------- 673
Query: 1641 QDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRD 1700
+ + K ++ +V++ LD++EN + ++ ++ RLDGS+ ++
Sbjct: 674 EGIRKG-----------TKEKVVVVSNYTQTLDIIENLM---NMAGMSHCRLDGSIPAKQ 719
Query: 1701 RQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQ 1760
R +V FN +P+I +I ++DWNP DLQAM R HR GQ
Sbjct: 720 RDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQ 779
Query: 1761 KKVVNVYRIITKGTLEEKIMGLQKFKMNIA------STIVNQQNAGLGSMNTHQLLDLF 1813
KK +YR++T G ++EKI+ Q K +++ S + N++++ N L DLF
Sbjct: 780 KKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLF 838
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 156 bits (395), Expect = 3e-37
Identities = 101/326 (30%), Positives = 153/326 (45%), Gaps = 28/326 (8%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK 1339
P K TL++YQ G+ WL + L+GIL D+MGLGKT+Q + +A
Sbjct: 579 PELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAH----------- 627
Query: 1340 TQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTA---- 1395
EK +W E ++ P L L Y GG R L+ +
Sbjct: 628 LAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYR 687
Query: 1396 -----DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVL 1450
I++TSY + D + ++ + Y VLDE IK+S S K + N +RL+L
Sbjct: 688 RDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLL 747
Query: 1451 TGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXX 1510
TGTPIQNN+ ELW+L F+MP F E F+K I + +
Sbjct: 748 TGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENH-----AEHGGTLNEHQLNR 802
Query: 1511 XHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTA 1570
H + PFMLRR+K++V+S+L K +C+LS Q+ Y +K + ++ E N
Sbjct: 803 LHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFY-QAIKNKISLAELFDSNRG 861
Query: 1571 EVENKQ--HIFQALQYMRKLCNHPSL 1594
+ +K+ ++ + +RK+CNHP L
Sbjct: 862 QFTDKKVLNLMNIVIQLRKVCNHPEL 887
Score = 84.3 bits (207), Expect = 2e-15
Identities = 68/205 (33%), Positives = 98/205 (47%), Gaps = 26/205 (12%)
Query: 1590 NHPSLVLNSSHPQFQQVQSYLS--QTGMDL-HDI-GHAPKLEALKTLLLECGIGIQDVEK 1645
N P + HP Q++ S L Q + L H I G P +++ L + D
Sbjct: 1153 NGPRKPNSFPHPLIQEIDSELPVVQPALQLTHRIFGSCPPMQSFDPAKL-----LTD--- 1204
Query: 1646 KSNKNPSIDNVISQ-----HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRD 1700
S K ++D ++ + HRVL+F Q+ ML+++E+ + + ++RLDGS D
Sbjct: 1205 -SGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYM---NYRKYKYLRLDGSSTIMD 1260
Query: 1701 RQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQ 1760
R+ +VR F I ADTVIF E DWNP DLQAMDRAHRLGQ
Sbjct: 1261 RRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQ 1320
Query: 1761 KKVVNV-----YRIITKGTLEEKIM 1780
K V +R K T+++ +M
Sbjct: 1321 TKDETVEEKILHRASQKNTVQQLVM 1345
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 155 bits (392), Expect = 6e-37
Identities = 132/526 (25%), Positives = 222/526 (42%), Gaps = 64/526 (12%)
Query: 1287 LRKYQQDGVNWL-----AFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQ 1341
L +Q++GV++L K IL D+MGLGKTLQTI ++ + L + Y +
Sbjct: 162 LYSHQREGVSFLYDCLLGMEGKCGYSAILADEMGLGKTLQTITVVWT---LLKQSYYANR 218
Query: 1342 SEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTADIVVTS 1401
S +WE EF + + VY + + T I++T
Sbjct: 219 SSTINNAMVVAPVTLLK--NWENEFYNWLGHERIHVYIARCAEDFQEFTSNKTYSIIITG 276
Query: 1402 YDVARNDVDFLKKY----DYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQN 1457
Y+ +L+ Y D + + DE H +K+ S+ + + + RL+LTGTP+QN
Sbjct: 277 YETV---CTYLRNYGCGIDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQN 333
Query: 1458 NVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLP 1517
++ E +S+ +F++PG LGT F+ ++ +PI SR+ SS+ +
Sbjct: 334 DLSEYFSMVNFIIPGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTSN 393
Query: 1518 FMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
F LRR + LPP+ + + + Q+ +Y + K + V+ K +
Sbjct: 394 FTLRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLDGFK----------SSVDQKGY 443
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGH------APKLEALKT 1631
+ L + K+CN L+ N + +++LS D H + KL+ L
Sbjct: 444 YLKILTRLSKICNSTILLRN-------EKENFLSTELQDKHVFEQENMLLSSSKLQILAA 496
Query: 1632 LLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMR 1691
LL G Q + +I Q K+ L+++E L H V F +
Sbjct: 497 LLKSFQRGCQ-------------------KAVIVSQYKETLELIELFLSILH---VRFCK 534
Query: 1692 LDGSVDSRDRQKVVRKFNED--PSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDL 1749
L GS +R +V FN + +I E WNP DL
Sbjct: 535 LLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDL 594
Query: 1750 QAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN 1795
QA+ R +R GQK+ V +Y ++ G L+E+I Q K ++S+ ++
Sbjct: 595 QALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFID 640
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 150 bits (380), Expect = 1e-35
Identities = 157/666 (23%), Positives = 257/666 (38%), Gaps = 112/666 (16%)
Query: 1239 PLEAGIAAPVGL-SEELLRGREK--------ERDFIQQMMDPSKAKPFKLPVAIKATLRK 1289
P P+G+ +EE+L + E + + + D S + + L
Sbjct: 176 PTSENRKGPIGIPTEEILTSQNTQAMLHKLFENNVLDNVKDDSMQRQSSFIPGMHIRLLD 235
Query: 1290 YQQDGVNWLAFLNKYHLH----GILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
+Q G+ WL GIL DDMGLGKT+Q I +I S KK S K+
Sbjct: 236 HQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLP-----KKKHSIKS 290
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVA 1405
WE E Q S L +VY G RY L + D+V+T+Y +
Sbjct: 291 TLVVAPLSLIK----QWESEVQTKSK-LTAIVYHGAS--RYKLLKVIHEYDVVITTYQIL 343
Query: 1406 RND-----------------VDFLKKYDYNYC------VLDEGHIIKNSQSKLAKAVKLI 1442
++ + KK + +LDE H IKN SK A A +
Sbjct: 344 VSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCAL 403
Query: 1443 NSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXX 1502
+R LTGTP+QNNV EL+SL FL + +++++ + P+ + +
Sbjct: 404 QGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVFKRLRM 463
Query: 1503 XXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVV 1562
K +L + L +++ C+ + ++ Y++ + + +
Sbjct: 464 LLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSNLARNMERTM 523
Query: 1563 EKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQ-VQSYLSQTG------- 1614
+ + +N +I L +R+ CNHP S + QF+Q V ++ + G
Sbjct: 524 SNFVNSGKLGKNYTNILCLLLRLRQACNHPQ----SLNFQFEQDVDAFNALDGAANTNKL 579
Query: 1615 ---MDLHDIG---------------------------HAPKLEALKTLLLECGIGIQDVE 1644
D+ D+ H K + E GIQD
Sbjct: 580 ASDQDVDDLANLLETVEIGSRKKSFCTICMAELPPDFHEKKCKDCSRNFKELDKGIQDPN 639
Query: 1645 KKS----------------NKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVT 1688
K+ ++ D V + +IF Q LD+++ L K +
Sbjct: 640 DKTLYKSSKIREILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHLRKA---GIG 696
Query: 1689 FMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMND 1748
F+R DG +++R R+K + D A VI + WNP +
Sbjct: 697 FVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIE 756
Query: 1749 LQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQ 1808
QA+DR HR+GQ++ V VY+++ + T+EEKI+ LQ K ++A + G S+ T +
Sbjct: 757 EQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNLKRDLAKQALGD---GKKSVFTSK 813
Query: 1809 LLDLFD 1814
L L D
Sbjct: 814 KLTLND 819
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 147 bits (372), Expect = 1e-34
Identities = 106/357 (29%), Positives = 164/357 (45%), Gaps = 61/357 (17%)
Query: 1259 EKERDFIQQMMDPSKAKP------FKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCD 1312
++E + Q+ ++ K +P P K TL+ YQ G+ WLA + + GIL D
Sbjct: 501 KEEEEQAQESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGISGILAD 560
Query: 1313 DMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPT 1372
+MGLGKT+Q+I + H + + + P
Sbjct: 561 EMGLGKTVQSIAFLC---------------------------------HIAEHYGVFVPD 587
Query: 1373 LNVLVYAGGPSVRYPL-----QGQVPTAD----IVVTSYDVARNDVDFLKKYDYNYCVLD 1423
V+ Y G P+ R L Q + T D +V+TSY + +D + + + Y VLD
Sbjct: 588 FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLD 647
Query: 1424 EGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQER 1483
E IK++ S+ K + + +RL+L+GTPIQN++ ELW+L F+MP + F E
Sbjct: 648 EAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEW 707
Query: 1484 FAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCEL 1543
F+K I S +KT H + PFMLRR+K++V ++L KI YC L
Sbjct: 708 FSKDIESHAENKTG-----IDEKQISRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPL 762
Query: 1544 SDLQKQLYNDFVKKQKNVVEKDIE------NTAEVENKQHIFQALQYMRKLCNHPSL 1594
+ QK LY KQK +E + T+ + ++ + RK+CNHP L
Sbjct: 763 TIRQKLLYR--ALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNHPEL 817
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 141 bits (355), Expect = 1e-32
Identities = 164/708 (23%), Positives = 274/708 (38%), Gaps = 135/708 (19%)
Query: 1216 MSDSNEDIRKLATTTFASIIKLVPLEAGIAAPVGLSEELLRGREKERDFIQQMMDPSKAK 1275
+SD +E + K TT K + LR E + D A
Sbjct: 108 VSDDDEPLTKKRKTTARKKKKKTSTKKKSPKVTPYERNTLRLYEHHPELRNVFTDLKNAP 167
Query: 1276 PF-----KLPVAIKATLRKYQQDGVNWLAFLNK-YHLHGILCDDMGLGKTLQTICIIASD 1329
P+ K P + L +Q +G++WL + + G+L D+MG+GKT+QTI ++ +D
Sbjct: 168 PYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLMND 227
Query: 1330 QYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSP-TLNVLVYAGGPSVR--Y 1386
T+S W+ E +Q++ L + +Y G
Sbjct: 228 L---------TKSPSLVVAPTVALM------QWKNEIEQHTKGQLKIYIYHGASRTTDIK 272
Query: 1387 PLQGQVPTADIVVTSYDVARN-----------------DVDFLKKYDYNYCVLDEGHIIK 1429
LQG D+V+T+Y V + L D+ +LDE H IK
Sbjct: 273 DLQGY----DVVLTTYAVLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIK 328
Query: 1430 NSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFL----------------MPGF 1473
+ QS A+AV + + R L+GTP+QN + E++SL FL +
Sbjct: 329 DRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDW 388
Query: 1474 LGTEKMFQERFAKPIASSRN------SKTSSKXXXXXXXXXXXXHKQVL--PFMLRRLKE 1525
T++M + + I N K K + Q L MLRR K
Sbjct: 389 KFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKNIMLRRTKV 448
Query: 1526 EVLSD--LPPKII---QDYYC-ELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIF 1579
E D LPP+I+ +D++ E DL + LY D +K + VE+ + + N +IF
Sbjct: 449 ERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGV----VLNNYANIF 504
Query: 1580 QALQYMRKLCNHPSLVL----------------------------NSSHPQF------QQ 1605
+ MR+L +HP LVL + H +F +
Sbjct: 505 TLITRMRQLADHPDLVLKRLNNFPGDDIGVVICQLCNDEAEEPIESKCHHKFCRLCIKEY 564
Query: 1606 VQSYLSQT------------GMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSI 1653
V+S++ +DL L++ K + + + + S K ++
Sbjct: 565 VESFMENNNKLTCPVCHIGLSIDLSQPALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEAL 624
Query: 1654 DNVISQHR-------VLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVR 1706
+ + R ++F Q MLD+VE L + +V +L GS+ R + ++
Sbjct: 625 VEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTV---KLQGSMSPTQRDETIK 681
Query: 1707 KFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNV 1766
F + + A V ++ WNP + Q+ DR HR+GQ + V +
Sbjct: 682 YFMNNIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKI 741
Query: 1767 YRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFD 1814
R + ++E +I+ LQ+ K N+ +NQ A + + L LF+
Sbjct: 742 TRFCIEDSIEARIIELQEKKANMIHATINQDEAAISRLTPADLQFLFN 789
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 138 bits (347), Expect = 1e-31
Identities = 120/444 (27%), Positives = 199/444 (44%), Gaps = 69/444 (15%)
Query: 1361 HWEQEFQQYSPTLN---VLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKYDY 1417
+W+ EF ++ + V+ Y Q + +V SYD+A+ V+ LK +
Sbjct: 198 NWKAEFDKWWRLMRFPAVIALTANDITTY--QSTIKLMPYLVISYDLAQRHVEKLKIIRF 255
Query: 1418 NYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTE 1477
+ V DEGH +KN KL K + + RL+LTGTP+QN+ E +SL DF+ P G+
Sbjct: 256 DVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSI 315
Query: 1478 KMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEV-LSDLPPKII 1536
F++ + S R + ++ + MLRR +V L LP K
Sbjct: 316 VEFRK-----MCSDRPEQ---------------LNELIDECMLRRTAADVDLKHLPEKHE 355
Query: 1537 QDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVL 1596
+C S +QK ++++ + + R+L NHP L+L
Sbjct: 356 YILFCAASPIQKHVHSEICDYMTG----------------DALSLIFFARQLANHPKLLL 399
Query: 1597 NSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNV 1656
++ + ++ +++ + D H P+ G+ K+S K ++ ++
Sbjct: 400 DNLREKTEKSKAHKHSPLLLAFDGAHMPR----------GGV------KESGKLTALVDM 443
Query: 1657 ISQHRVLIFCQL-----KDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE- 1710
I R+L C + + LDM++ L ++L + +RLDG DRQK+VR FN+
Sbjct: 444 IKCFRLLQECTVIVSNYIETLDMIQQ--LCEYL-NFKVLRLDGKTQVPDRQKLVRTFNDH 500
Query: 1711 -DPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRI 1769
DPS + A ++ + DWNP ND QAM R R GQ + ++YR+
Sbjct: 501 RDPS-NIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRL 559
Query: 1770 ITKGTLEEKIMGLQKFKMNIASTI 1793
IT GT+EEK++ Q K + I
Sbjct: 560 ITTGTIEEKMLQRQIKKTGLGCVI 583
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 137 bits (344), Expect = 2e-31
Identities = 110/476 (23%), Positives = 201/476 (42%), Gaps = 88/476 (18%)
Query: 1398 VVTSYDVARNDVDFLKKYDYNYC-------VLDEGHIIKNSQSKLAKAVKLINSNHRLVL 1450
V+ D +F ++++ C + DEGH IKN Q+ ++A+K I S R+VL
Sbjct: 323 VIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVL 382
Query: 1451 TGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXX 1510
TG P+QNN++E W + DF+ P FLGT + F F +PI + + ++ +
Sbjct: 383 TGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHV 442
Query: 1511 XHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTA 1570
H + F+ RR + LP K LS +Q+ LY F+ + ++
Sbjct: 443 LHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGL- 501
Query: 1571 EVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKL---- 1626
+ +A K+ NHP ++ + Q +S ++ +D+ ++G A
Sbjct: 502 ------NPLKAFCVCCKIWNHPDVLYEA-----LQKESLANEQDLDVEELGSAGTSARCP 550
Query: 1627 ------------------EALKTLLLECGIGIQDVEKKSN-------------------- 1648
EA + L+ G+G +++ N
Sbjct: 551 PQGTKGKGEDSTLASSMGEATNSKFLQ-GVGFNPFQERGNNIVTYEWAKDLLTNYQTGVL 609
Query: 1649 -KNPSI--------DNVISQHRVLIFCQLKDMLDMVENDLLKKHLP-------------- 1685
+P + ++V ++L+F Q L ++E L K+ +P
Sbjct: 610 ENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWV 669
Query: 1686 -SVTFMRLDGSVDSRDRQKVVRKFNEDPSID--CXXXXXXXXXXXXXXXXADTVIFVEHD 1742
++++ RLDGS + +R++++ +FN+ ++ A+ V+ +
Sbjct: 670 RNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDAS 729
Query: 1743 WNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
WNP +D QA+ R +R GQKK +YR++ TLE+KI Q K ++ +V+ N
Sbjct: 730 WNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 785
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 131 bits (330), Expect = 9e-30
Identities = 138/576 (23%), Positives = 230/576 (38%), Gaps = 55/576 (9%)
Query: 1274 AKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYL 1332
A+ + P+ + L KYQ++ + W + G IL D+MG+GKT+Q I ++ +
Sbjct: 121 AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLAR--- 177
Query: 1333 RSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY-SPTLNVLVYAGGPSVRYPLQGQ 1391
R D K++ W E + SP ++ GP +Q +
Sbjct: 178 REVDRAKSREA---VGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQ-K 233
Query: 1392 VPTADIVVTSYDVARND----------VDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKL 1441
+ D V+T+ + N+ + L +N ++DE H IKN S+ AKAV
Sbjct: 234 LMNYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFA 293
Query: 1442 INSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXX 1501
+ + +R L+GTP+QN+V EL+SL + F F +A A T ++
Sbjct: 294 LEATYRWALSGTPLQNDVDELYSLVSYSFLNF------FYSTYAS-FAFRHTHITFARNV 346
Query: 1502 XXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNV 1561
+P + + ++ + + LS ++ Y K K
Sbjct: 347 TVKFLIGGNILPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTT 406
Query: 1562 VEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIG 1621
+ I+ + N HIF L +R+ +HP LV SS P + G
Sbjct: 407 FDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVSYSS-PSGANANLLDANKNEKECGFG 465
Query: 1622 HAP----------------KLEALKTLLLECGIGIQDVEKKSNKNPSIDNVIS------- 1658
H P KL+ + + I + D K S K ++ I
Sbjct: 466 HDPSKDYFVTSSEHQASKTKLKGFRASSILNRINLDDF-KTSTKIEALREEIRFMVERDW 524
Query: 1659 QHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXX 1718
+ ++F Q LD++ L K V+ ++L GS+ + ++ F E+P
Sbjct: 525 SAKAIVFSQFTSFLDLISYALGKS---GVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLL 581
Query: 1719 XXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEK 1778
A V ++ WNP + QA DR HR+GQ K V V R I + T+EEK
Sbjct: 582 MSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEK 641
Query: 1779 IMGLQKFKMNI-ASTIVNQQNAGLGSMNTHQLLDLF 1813
I+ LQK K ++ ST+ + + A + + + LF
Sbjct: 642 ILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSLF 677
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 129 bits (323), Expect = 6e-29
Identities = 139/621 (22%), Positives = 253/621 (40%), Gaps = 110/621 (17%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
P +K L +Q+ + WL + G IL DDMGLGKTL I +I + ++++ K
Sbjct: 563 PAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQ---KNQEKK 619
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGH-------------WEQEFQQYSPTLNVLVYAGGPSVR 1385
+ + + T T H W+ E ++ + + VY R
Sbjct: 620 EEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNR 679
Query: 1386 YPLQGQVPTADIVVTSYDVARNDVDFLK--------------------KYDYNYCVLDEG 1425
+ T DIV+T+Y + ++ K + + +LDE
Sbjct: 680 DSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEA 739
Query: 1426 HIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFA 1485
H +KN + + + AV + + R +TGTPIQNN+++++SL FL +++ +
Sbjct: 740 HNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQV- 798
Query: 1486 KPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSD------LPPKIIQDY 1539
SK + +LRR K+++ S LP + Q +
Sbjct: 799 -----DNGSKKGGERLSILTKS----------LLLRRTKDQLDSTGRPLVILPQRKFQLH 843
Query: 1540 YCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQ----------------------- 1576
+ +LS+ ++ +YN F + ++ ++ ++ N+
Sbjct: 844 HLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHS 903
Query: 1577 -----------HIFQALQYMRKLCNHPSLVLNSSHPQ-------FQQVQSYLSQ-TGMDL 1617
HI L +R+ C H SL+ ++ P ++ LS T +L
Sbjct: 904 EAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSEL 963
Query: 1618 HDIGHAPKLEALKTLL-LECGIGIQDVEKKSNKNPSID----NVISQHRVLIFCQLKDML 1672
D + + T +E G+++ K S+ ++ N SQ V++ Q +ML
Sbjct: 964 RDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIV-SQWTNML 1022
Query: 1673 DMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXX 1732
+V L KKH +T+ +DGSV+ + R +V FN
Sbjct: 1023 KVVALHL-KKH--GLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTG 1079
Query: 1733 ADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
+ + ++ WNP + QA DR +R+GQ+K V ++R + +GT+EEKI+ LQ+ K ++A
Sbjct: 1080 GNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQ 1139
Query: 1793 IVNQQNAGLGSMNTHQLLDLF 1813
+++ + + L LF
Sbjct: 1140 VLSGSGESVTKLTLAHLRVLF 1160
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 129 bits (323), Expect = 6e-29
Identities = 147/634 (23%), Positives = 259/634 (40%), Gaps = 130/634 (20%)
Query: 1271 PSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKY-HLHGILCDDMGLGKTLQTICIIASD 1329
P + + P K L +Q+ G+ W+ + GIL DDMGLGKTL I +IA
Sbjct: 455 PDETELTDTPKGFKLELMPHQKAGLTWMRWRETQPQPGGILADDMGLGKTLSMISLIAHQ 514
Query: 1330 QYLRS---EDYKKTQSEKTR----------XXXXXXXXXXXXTGHWEQEFQQY--SPTLN 1374
+ R ED + ++ R W+ E + L+
Sbjct: 515 KAARRARREDGNDDKDKEKRKVVKEQGLIPSNGTLIVAPASLIHQWDAEIDRRLDDSVLS 574
Query: 1375 VLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDV------------------------- 1409
++ G R ++ D+V+T++++ N++
Sbjct: 575 TYMFHGTKKQRDIDARRLARYDVVITTFNLIANELIEKIRTKSKADDSSDGESDSNHTGI 634
Query: 1410 --------DFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVE 1461
L + ++ +LDE H IKN QS +KAV +++ R L+GTPI NN+ +
Sbjct: 635 RRAVGKDDSVLAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWD 694
Query: 1462 LWSLFDFLMPGFLGTEKMFQERFA--KPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFM 1519
L+SL FL +K ++E KPI + R + + +
Sbjct: 695 LYSLVRFLRIRPFSDDKYWKESIMPMKPIMADRVNLLTKN------------------LL 736
Query: 1520 LRRLKEEV-------LSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEV 1572
LRR K++ L LPPK ++ + EL + Q Y ++ K V+K ++++ ++
Sbjct: 737 LRRTKDQTCAVTNQKLVQLPPKNVEVHELELDGDEAQAYEIMMEAAKKFVKKLLQDSNDM 796
Query: 1573 ENKQHIFQALQYMRKL--CNHP------SLVLNSSHPQFQQVQSYL------------SQ 1612
+N I + + K +P L S+ + V L ++
Sbjct: 797 KNHGFIPRRNRRAGKEGEVQNPFNFGPRDLAAGSNFEKMSCVLMLLLRLRQACVHFNITK 856
Query: 1613 TGMDLH-------DIGHAPKLEALKTLL---LECGIGIQDVEKKSNKNPSIDNVISQHRV 1662
TG+D+ D ++ L LL + +G D E++ + +
Sbjct: 857 TGVDMDAFSLIGGDNAEEANVDDLNELLEKTMNMTLGNGDNEERDKPRATTRIFDPDY-- 914
Query: 1663 LIFCQLKDMLDMVENDLLKK------------------HLPSVTFM--RLDGSVDSRDRQ 1702
+ C++K+ L++VEN + KK H+ S F + G V +DRQ
Sbjct: 915 -LSCKIKNTLEIVENIMEKKEKVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQ 973
Query: 1703 KVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQK 1761
+ V FN E + ++ V+ WNP + QA DR +R+GQK
Sbjct: 974 ERVDSFNREKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQK 1033
Query: 1762 KVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN 1795
K V ++R++TKGT+E++++ LQK K+ +AS++++
Sbjct: 1034 KDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLD 1067
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 127 bits (320), Expect = 1e-28
Identities = 146/644 (22%), Positives = 249/644 (37%), Gaps = 124/644 (19%)
Query: 1271 PSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASD 1329
P + K + P + L +Q++GV WL G IL D+MG+GKT+QTI ++ S+
Sbjct: 341 PREVKQIEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLSE 400
Query: 1330 QYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYS-PTLNVLVYAGGPSVRYPL 1388
R W++E ++ L+ +Y G R
Sbjct: 401 P---------------RGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYLYYG--QARDIS 443
Query: 1389 QGQVPTADIVVTSYDVARN-----------------DVDFLKKYDYNYCVLDEGHIIKNS 1431
++ + D+V+TSY+V + + L + ++ +LDE H IK+
Sbjct: 444 GEELSSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAHGIKSR 503
Query: 1432 QSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPG------FLGTE-KMFQERF 1484
A+AV + + ++ L+GTP+QN + EL+SL FL L E K RF
Sbjct: 504 TCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRF 563
Query: 1485 A----------KPIA-----SSRNSKTSSKXXXX--XXXXXXXXHKQVLPFMLRRLKEEV 1527
+ KP++ ++ K K H + MLRR K E
Sbjct: 564 SDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVHSLLKHIMLRRTKLER 623
Query: 1528 LSD--LPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYM 1585
D LPP++++ ++ ++ +Y K + + N +IFQ + M
Sbjct: 624 ADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRM 683
Query: 1586 RKLCNHPSLVLNSS-----------------------------HPQFQQ--VQSYLSQTG 1614
R++ +HP LVL S H F + V Y++ G
Sbjct: 684 RQMADHPDLVLASKRKTVDIENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAG 743
Query: 1615 MDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQH-------------- 1660
D ++ + P ++ L ++D ++ KN SI N I +
Sbjct: 744 -DGENV-NCPSCFIPLSIDLSAP-ALEDFSEEKFKNASILNRIDMNSWRSSTKIEALVEE 800
Query: 1661 -----------RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFN 1709
+ ++F Q MLD++ L K V +LDG + + R + F+
Sbjct: 801 LYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCV---KLDGGMTPKARAATIEAFS 857
Query: 1710 EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRI 1769
D +I A V ++ WN QAMDR HR+GQK+ + V +
Sbjct: 858 NDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKVITL 917
Query: 1770 ITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLF 1813
+ ++E KI+ LQ+ K + ++Q L ++ + LF
Sbjct: 918 CIENSIESKIIELQEKKAQMIHATIDQDEKALNQLSVEDMQFLF 961
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 126 bits (316), Expect = 4e-28
Identities = 91/299 (30%), Positives = 137/299 (45%), Gaps = 38/299 (12%)
Query: 1217 SDSNEDIRKLATTTFASIIKLVPLEAGI------AAPVGLSEELLRGREKERDFIQQMMD 1270
SD EDIR+LA + ++ + + +P S ++ G +
Sbjct: 771 SDEEEDIRRLAVESAQEAVQKAREHSQLFDANRQQSPNNSSSDMNEGE-------MNFQN 823
Query: 1271 PSKAKPF--KLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIAS 1328
P+ F K P + L++YQ G+NWLA L + ++GIL D+MGLGKT+Q+I ++A
Sbjct: 824 PTLVNAFEVKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMA- 882
Query: 1329 DQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGH-WEQEFQQYSPTLNVLVYAGGPSVRYP 1387
YL +E T H W+QE ++ P L + Y G R
Sbjct: 883 --YL---------AETHNIWGPFLVIAPASTLHNWQQEITRFVPKLKCIPYWGSTKDRKI 931
Query: 1388 LQ----------GQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAK 1437
L+ + +VVTSY + D + + + Y +LDE IK+S S K
Sbjct: 932 LRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWK 991
Query: 1438 AVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKT 1496
++ +RL+LTGTPIQN + ELW+L F+MP + F E F+K I S S T
Sbjct: 992 SLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNT 1050
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 119 bits (297), Expect = 6e-26
Identities = 147/691 (21%), Positives = 266/691 (38%), Gaps = 145/691 (20%)
Query: 1252 EELLRGREKERDFIQQMMDPSKAKPFKL-----PVAIKATLRKYQQDGVNWLAFLN-KYH 1305
+++L+ + +QQ+ D + P + P + L +Q+ G+ WL + + H
Sbjct: 349 QKILKVNKISDRLMQQLADATHTIPAETDLTDTPDGLLVELMPHQKAGLRWLVWREGQPH 408
Query: 1306 LHGILCDDMGLGKTLQTICIIASDQYLRSEDYKK----TQSEKTRXXXXXXXXXXXXT-- 1359
GIL DDMGLGKTL + +I + R + EK R T
Sbjct: 409 SGGILADDMGLGKTLSMLSLIVHQKAARRARKESGDNAADKEKRRVAKEEGLYPSNGTLI 468
Query: 1360 -------GHWEQEFQQY--SPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDV- 1409
WE E + S L+V ++ G R ++ D+V+T+Y +A N++
Sbjct: 469 IAPASLIHQWEAEINRRLESDLLSVFMFHGTKKQRQIEPKELARYDVVITTYTLAANELM 528
Query: 1410 -------------------------------DFLKKYDYNYCVLDEGHIIKNSQSKLAKA 1438
L + ++ +LDE H IKN S+ +KA
Sbjct: 529 EKKAAGSKKEEDSDDESENEENPRRPAGKNDSPLARVAWSRVILDEAHAIKNRLSQCSKA 588
Query: 1439 VKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSS 1498
V ++S R L+GTPI NN+ +L+SL FL G K + E P+ + + +
Sbjct: 589 VCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLRIPLFGDRKFWAESIM-PMKTGMADRVNL 647
Query: 1499 KXXXXXXXXXXXXHKQVLPFMLRRLKEE------------------VLSDLPPKIIQDYY 1540
+ + LKE+ ++ + K+++
Sbjct: 648 LTKNLMLRRTKDQQCALTNKKIVNLKEKKIEIHELEMVGDEANGYAIMMEAAQKLVKQIV 707
Query: 1541 CELSDLQKQLYNDFVKKQK-----------NVVEKDIENTAEVENKQHIFQALQYMRKLC 1589
D+QK Y ++++ NV +++ + +N I L +R+ C
Sbjct: 708 TNTDDIQK--YGQIRRRRQRGNDDEFANPYNVGPRNLAGNSNFQNMSCILLLLMRLRQAC 765
Query: 1590 NHPSLVLNSSHPQFQQVQSYLSQTGMDLHDI---GHAPKLEALKTL--LLECGIGIQDVE 1644
H +++++GMDL G + +K L L+E + +
Sbjct: 766 VH----------------FHITKSGMDLDAFKINGGDDEDADMKELENLMEKTMADLTIA 809
Query: 1645 KKSNKNPSIDNVISQHRV---------LIFCQLKDMLDMVEN------------------ 1677
N +D + + I C++ L++V
Sbjct: 810 DSDNDEEGVDTNKEEPKQPPTRIFEPDFISCKMAKTLEVVREILEKKEKVVIVSQWTSVL 869
Query: 1678 DLLKKHLPSV--TFMRLDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXAD 1734
+L++KH+ + + + G V +DRQ+ V FN++ +
Sbjct: 870 NLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVMLLSLTAGGVGLNLIGGN 929
Query: 1735 TVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVY--------RIITKGTLEEKIMGLQKFK 1786
+I V+ WNP + QA DR +R+GQKK V ++ R+I KGT+E+++M LQ+ K
Sbjct: 930 HLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLNISKFCRLIVKGTIEQRVMDLQEKK 989
Query: 1787 MNIASTIV-NQQNAGLGSMNTHQLLDLFDAD 1816
+ +A++++ L + T + LF D
Sbjct: 990 LALAASVLEGTATRKLNKLTTADIRMLFGLD 1020
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 117 bits (294), Expect = 1e-25
Identities = 92/339 (27%), Positives = 152/339 (44%), Gaps = 56/339 (16%)
Query: 1361 HWEQEFQQYSPTLNVLVYAGGPSVRYPLQ----------GQVPTA----DIVVTSYDVAR 1406
+WE+EF+ ++ +NV+VY G R +Q G++ ++T++++
Sbjct: 36 NWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMIL 94
Query: 1407 NDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLF 1466
L ++ ++DE H +KN KL + +KL+N H+++LTGTP+QN V EL+SL
Sbjct: 95 GGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLL 154
Query: 1467 DFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEE 1526
FL P +E F + F + K + + P MLRRLKE+
Sbjct: 155 HFLEPLRFPSESTFMQEFGDLETEEQVQKLQA---------------ILKPMMLRRLKED 199
Query: 1527 VLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMR 1586
V L PK EL+++QK+ Y ++K + + K T N ++ + +R
Sbjct: 200 VEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQT----NVPNLVNTMMELR 255
Query: 1587 KLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLH---DIGHAPKLEALKTLLLECGIGIQDV 1643
K CNHP L+ + + + + D H I A KL + LL + G
Sbjct: 256 KCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAG---- 311
Query: 1644 EKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKK 1682
H+VLIF Q+ LD++E+ L+ K
Sbjct: 312 ---------------GHKVLIFSQMVRCLDILEDYLIHK 335
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 116 bits (290), Expect = 4e-25
Identities = 81/263 (30%), Positives = 128/263 (47%), Gaps = 32/263 (12%)
Query: 1536 IQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLV 1595
I D+ EL L Q+ + V +++ VVE +I +EV K + + +RK CNHP L+
Sbjct: 31 IDDFPNELEKLISQIQPE-VDRERAVVEVNIPVESEVNLK--LQNIMMLLRKCCNHPYLI 87
Query: 1596 LNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDN 1655
P Q+ + +D + ++ K L +L E ++K+
Sbjct: 88 EYPIDPVTQEFK-------IDEELVTNSGKFLILDRMLPE-------LKKRG-------- 125
Query: 1656 VISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSID 1715
H+VL+F Q+ MLD++ + HL F RLDGS+ +R+K + FN DP +
Sbjct: 126 ----HKVLLFSQMTSMLDILMDYC---HLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVF 178
Query: 1716 CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTL 1775
ADTVI + DWNP +DLQA DR HR+GQ K V VYR++T T+
Sbjct: 179 IFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTI 238
Query: 1776 EEKIMGLQKFKMNIASTIVNQQN 1798
++KI+ K + I+++ +
Sbjct: 239 DQKIVERAAAKRKLEKLIIHKNH 261
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 114 bits (286), Expect = 1e-24
Identities = 85/328 (25%), Positives = 138/328 (41%), Gaps = 32/328 (9%)
Query: 1277 FKLPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSED 1336
F P + LR YQ+ G++WLA L + +L+GIL D+ GLGKT+Q I A
Sbjct: 1045 FNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAH-------- 1096
Query: 1337 YKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGP---SVRYPLQGQVP 1393
+ WE E +++ P L +L Y G + +
Sbjct: 1097 ---LACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQEWAEPN 1153
Query: 1394 TADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGT 1453
+ + +TSY + + + V+DE +K + +AV + S RL+L +
Sbjct: 1154 SFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDS 1213
Query: 1454 PIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHK 1513
P+ N +ELW++ FL+PG ++P SS S + H+
Sbjct: 1214 PLHNTFLELWTMVHFLVPG-----------ISRPYLSSPLRAPSEESQDYYHKVVIRLHR 1262
Query: 1514 QVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVE 1573
PF+LRR K +V L K C LS+ QK LY D +++ + +
Sbjct: 1263 VTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDV------ILQPGTQEALKSG 1316
Query: 1574 NKQHIFQALQYMRKLCNHPSLVLNSSHP 1601
+ ++ L ++++CNHP LV HP
Sbjct: 1317 HFVNVLSILVRLQRICNHPGLV-EPRHP 1343
Score = 78.6 bits (192), Expect = 9e-14
Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXX 1720
RVLI Q+ MLD++E L +L T++R+D + S RQ+++R FN D I C
Sbjct: 1880 RVLILSQMILMLDILEMFLNFHYL---TYVRIDENASSEQRQELMRSFNRDRRIFCAILS 1936
Query: 1721 XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIM 1780
ADTV+F ++D NP+ D +A + R+G+ K +++YR+++ ++EEK++
Sbjct: 1937 THSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLL 1996
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 113 bits (282), Expect = 3e-24
Identities = 85/280 (30%), Positives = 133/280 (47%), Gaps = 39/280 (13%)
Query: 1521 RRLKEEVLSD-LPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIF 1579
+RLK++VL D +PPK ++S QK++Y + V+ K + A++ N
Sbjct: 325 KRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTK--KRDAKISN----- 377
Query: 1580 QALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIG 1639
L +R++C+HP L L P+F+ ++ L G L+ + L E G
Sbjct: 378 -VLMKLRQVCSHPYL-LPDFEPRFEDANEAFTKL---LEASGKLQLLDKMMVKLKEQG-- 430
Query: 1640 IQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSR 1699
HRVLI+ Q + L ++E+ K+ + R+DG +
Sbjct: 431 --------------------HRVLIYTQFQHTLYLLEDYFTFKNW---NYERIDGKISGP 467
Query: 1700 DRQKVVRKFN-EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRL 1758
+RQ + +FN E+ + C ADTVI + DWNP DLQAM R HRL
Sbjct: 468 ERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRL 527
Query: 1759 GQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
GQ V +YR+I KGT+EE++M + K KM + +V +Q+
Sbjct: 528 GQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQH 567
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 108 bits (269), Expect = 1e-22
Identities = 107/432 (24%), Positives = 181/432 (41%), Gaps = 96/432 (22%)
Query: 1243 GIAAPVGLSEELLRGREKERDFIQQMMDPSKAKPFKLPVA------IKATLRKYQQDGVN 1296
G++ V + E++ G ++ D I +++D + KL A IK+ L +Q++G+
Sbjct: 181 GLSEAVVVKEQMGNGDKRSVDKIFKLVDENVKLMGKLVAAEPPREVIKSELFAHQKEGLG 240
Query: 1297 WLA------------------FLNKYHLH-----------GILCDDMGLGKTLQTICIIA 1327
WL FLN + G+ DDMGLGKTL + +IA
Sbjct: 241 WLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIA 300
Query: 1328 SDQY-------------------LRSEDYKKTQSEKTRXXXXXXXXXXXXTGH------- 1361
D+Y + + K+ + + + G
Sbjct: 301 FDRYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTT 360
Query: 1362 -----------WEQEFQQYSPT--LNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARND 1408
W + ++++ L V +Y GG R ++ DIV+T+Y +
Sbjct: 361 LIVCPPSVISAWITQLEEHTVPGILKVYMYHGGE--RTDDVNELMKYDIVLTTYGTLAVE 418
Query: 1409 VDF----LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWS 1464
+ +KK ++ +LDE H IKN+ ++ ++ V + ++ R +TGTPIQN +L+S
Sbjct: 419 ESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYS 478
Query: 1465 LFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVL--PFMLRR 1522
L FL + +Q +P+ N K S+ QVL LRR
Sbjct: 479 LMAFLRFEPFSIKSYWQSLIQRPLGQG-NKKGLSRL-------------QVLMATISLRR 524
Query: 1523 LKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQAL 1582
KE+ L LPPK ++ Y ELS ++QLY+ + K VV+ I N + + N + +
Sbjct: 525 TKEKSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNLINNGSLMRNYSTVLSII 584
Query: 1583 QYMRKLCNHPSL 1594
+R+LC+ SL
Sbjct: 585 LRLRQLCDDMSL 596
Score = 70.1 bits (170), Expect = 3e-11
Identities = 65/264 (24%), Positives = 113/264 (42%), Gaps = 29/264 (10%)
Query: 1533 PKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCN-- 1590
P+++Q L D + + N++ I A + + I Q LQ + LC
Sbjct: 617 PELLQKLVAALQDGEDFDCPICISPPTNII---ITRCAHIFCRACILQTLQRSKPLCPLC 673
Query: 1591 HPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKN 1650
SL + + + G D + K+ AL +LL+ +N
Sbjct: 674 RGSLTQSDLYNAPPPPPDSSNTDGEDAKSSTKSSKVSALLSLLMA----------SRQEN 723
Query: 1651 PSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE 1710
P+ +V+ F Q + ML ++E L T +RLDG++ + R +V+ +F
Sbjct: 724 PNTKSVV-------FSQFRKMLLLLETPL---KAAGFTILRLDGAMTVKKRTQVIGEFG- 772
Query: 1711 DPSID---CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVY 1767
+P + A V + WNP + QAMDR HR+GQK+ V +
Sbjct: 773 NPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMI 832
Query: 1768 RIITKGTLEEKIMGLQKFKMNIAS 1791
R+I + ++EE+++ LQ+ K N+A+
Sbjct: 833 RMIARNSIEERVLELQQKKKNLAN 856
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 107 bits (267), Expect = 2e-22
Identities = 66/214 (30%), Positives = 115/214 (52%), Gaps = 29/214 (13%)
Query: 1286 TLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEK 1344
+LR YQ +G+NWL F + Y+ H IL D+MGLGKT+Q++ + S E
Sbjct: 2021 SLRPYQLEGLNWLKF-SWYNTHNCILADEMGLGKTIQSLTFVHSVY------------EY 2067
Query: 1345 TRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQ----------GQVPT 1394
+W++EF+ ++ +NV+VY G + + +Q G+V
Sbjct: 2068 GIRGPFLVIAPLSTIPNWQREFEGWTD-MNVVVYHGSVTSKQMIQDYEYYYKTESGKVLK 2126
Query: 1395 A----DIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVL 1450
++++T++++ D LK +++ CV+DE H +KN KL + ++ +N HR++L
Sbjct: 2127 EPIKFNVLITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLL 2186
Query: 1451 TGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERF 1484
+GTP+QNN+ EL+SL +FL P +++ F F
Sbjct: 2187 SGTPLQNNISELFSLLNFLEPSQFSSQEEFMSEF 2220
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 106 bits (265), Expect = 3e-22
Identities = 67/217 (30%), Positives = 105/217 (47%), Gaps = 29/217 (13%)
Query: 1582 LQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQ 1641
+ +RK CNHP L+ P Q+ + +D + ++ K L +L E
Sbjct: 1 MMLLRKCCNHPYLIEYPIDPVTQEFK-------IDEELVTNSGKFLILDRMLPE------ 47
Query: 1642 DVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDR 1701
++K+ H+VL+F Q+ MLD++ + HL F RLDGS+ +R
Sbjct: 48 -LKKRG------------HKVLLFSQMTSMLDILMDYC---HLRDFNFSRLDGSMSYSER 91
Query: 1702 QKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQK 1761
+K + FN DP + ADTVI + DWNP +DLQA DR HR+GQ
Sbjct: 92 EKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQT 151
Query: 1762 KVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN 1798
K V VYR++T T+++KI+ K + I+++ +
Sbjct: 152 KPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNH 188
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 102 bits (254), Expect = 6e-21
Identities = 93/331 (28%), Positives = 149/331 (44%), Gaps = 54/331 (16%)
Query: 1308 GILCDDMGLGKTLQTICIIAS-------------------DQYLRSEDYKKTQSEKTRXX 1348
GIL D MGLGKT+ TI +I + D+ R E + + K +
Sbjct: 683 GILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGG 742
Query: 1349 XXXXXXXXXXTGHWEQEFQQYSP--TLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVA- 1405
+ W+ E + +S T++VLVY GG R + + D+V+T+Y V
Sbjct: 743 TLIICPMALLS-QWKDELETHSKPDTVSVLVYYGGD--RTHDAKAIASHDVVLTTYGVLT 799
Query: 1406 ---RNDV--DFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVV 1460
+ D+ + D+ VLDE H IK+ +++ AKA ++S+ R LTGTP+QN +
Sbjct: 800 SAYKQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLE 859
Query: 1461 ELWSLFDFLMPGFLGTEKMFQERFAKPIASS--RNSKTSSKXXXXXXXXXXXXHKQVL-P 1517
+L+SL FL + + KP + R K K +L P
Sbjct: 860 DLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLKLI---------------KAILRP 904
Query: 1518 FMLRRLKE------EVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAE 1571
MLRR KE ++ +LPP +Q CE S+ ++ Y K+ K ++ +
Sbjct: 905 LMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKV 964
Query: 1572 VENKQHIFQALQYMRKLCNHPSLVLNSSHPQ 1602
+ N +I + L +R+ CNHP LV++ + Q
Sbjct: 965 LHNYANILELLLRLRQCCNHPFLVMSRADSQ 995
Score = 71.2 bits (173), Expect = 1e-11
Identities = 42/141 (29%), Positives = 71/141 (49%), Gaps = 4/141 (2%)
Query: 1658 SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCX 1717
S + ++F Q LD++E L ++ F+R DG + + R+KV+++FNE
Sbjct: 1126 SGEKSIVFSQWTSFLDLLEIPLRRR---GFEFLRFDGKLAQKGREKVLKEFNETKQKTIL 1182
Query: 1718 XXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEE 1777
A +V ++ WNP + QA+ R HR+GQK+ V V R I K T+EE
Sbjct: 1183 LMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEE 1242
Query: 1778 KIMGLQKFKMN-IASTIVNQQ 1797
++ +Q K IA + +++
Sbjct: 1243 RMQQVQARKQRMIAGALTDEE 1263
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 102 bits (253), Expect = 8e-21
Identities = 82/317 (25%), Positives = 135/317 (41%), Gaps = 39/317 (12%)
Query: 1309 ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQ 1368
IL MGLGKTLQ + + S L + +T +W +EF
Sbjct: 486 ILAHCMGLGKTLQVVTL--SHTLL-------VNTRRTGVDRVLIISPLSTVNNWAREFTS 536
Query: 1369 YSPTLN--------VLVYAGGPSVRYPLQGQVPTADIVVTSYDV----ARNDVDFLKKYD 1416
+ N + Y P+ + L + + YD+ A L+K
Sbjct: 537 WMKFANRNDIEVYDISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQ 596
Query: 1417 Y------------NYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWS 1464
+ V DEGH++KN ++ ++KAV + + R+VLTGTP+QNN+ E +
Sbjct: 597 REQLMQALVDPGPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYC 656
Query: 1465 LFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLK 1524
+ F+ P LGT K + RF PI + + + ++ + HK + + RR
Sbjct: 657 MIQFVKPNLLGTYKEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDY 716
Query: 1525 EEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQY 1584
+ LPPK Y LS+LQ++LY ++ + D+ V +FQ Q
Sbjct: 717 SVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHREQSGGDV-----VGKGARLFQDFQD 771
Query: 1585 MRKLCNHP-SLVLNSSH 1600
+R++ HP +L +NS +
Sbjct: 772 LRRIWTHPMNLRVNSDN 788
Score = 67.0 bits (162), Expect = 3e-10
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 5/208 (2%)
Query: 1616 DLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDM-LDM 1674
+L+++ H+PKL L LL +C + S S+D VI L+ K+ +
Sbjct: 890 ELNNVHHSPKLLILLRLLQQCEAIGDKLLVFSQSLQSLD-VIEHFLSLVDSNTKNYEFEG 948
Query: 1675 VENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXX--X 1732
D + RLDGS R+ + ++FN ++
Sbjct: 949 DVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVA 1008
Query: 1733 ADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
A+ V+ + WNP +D Q++ R +R GQ K +YR+I GT+E+K+ Q K A
Sbjct: 1009 ANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKR 1068
Query: 1793 IVNQQNAGLGSMNTHQLLDLFDADNIPS 1820
++++Q N L++L+ + PS
Sbjct: 1069 VIDEQQIS-RHYNQTDLMELYSYELKPS 1095
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 101 bits (251), Expect = 1e-20
Identities = 95/400 (23%), Positives = 163/400 (40%), Gaps = 62/400 (15%)
Query: 1399 VTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLI--NSNHRLVLTGTPIQ 1456
+ SYDV L D+ + DE H +KN Q+K A + + + ++L+GTP
Sbjct: 301 IVSYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKKAQYAILLSGTPAL 360
Query: 1457 NNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKT--SSKXXXXXXXXXXXXHKQ 1514
+ +EL+ + L P + R+ K ++ K SS H +
Sbjct: 361 SRPIELFKQLEALYPDVYRNIHEYGGRYCKGVSPLHIEKLPRSSYKGFFGTYQGASNHDE 420
Query: 1515 V-----LPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENT 1569
+ M+RRLK++VL++LP K Q + +L+ + N + K V K +
Sbjct: 421 LHNLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAAKDMKQINALFHELKVVKSKIKDCI 480
Query: 1570 AEVENKQHIFQALQYMRK-LCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEA 1628
+E + K +L+++ K L N + +S+ + V YL
Sbjct: 481 SEDDIK-----SLKFIEKNLIN--KIYTDSAVAKIPAVLDYLEN---------------- 517
Query: 1629 LKTLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVT 1688
++E G + L+F + ML+ + L KK V
Sbjct: 518 ----VIEAGC----------------------KFLVFAHHQSMLEELHQFLKKK---KVG 548
Query: 1689 FMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMND 1748
+R+DGS + RQ +V F + I A TVIF E W P +
Sbjct: 549 CIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDL 608
Query: 1749 LQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMN 1788
+QA DRAHR+GQ VN++ ++ T+++ I + + K++
Sbjct: 609 IQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLD 648
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 100 bits (249), Expect = 2e-20
Identities = 124/489 (25%), Positives = 177/489 (35%), Gaps = 93/489 (19%)
Query: 1412 LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFL-- 1469
L +N +LDE H IK +S A+AV + + +R L+GTP+QN V EL+SL FL
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 1470 --------------MPGFLGTEK-------------MFQERFAKPIASSRNSKTSSKXXX 1502
+ ++ + + + AKPI
Sbjct: 409 RPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPIT------VYGSFGL 462
Query: 1503 XXXXXXXXXHKQVLPFMLRRLKEEVLSD--LPPKIIQDYYCELSDLQKQLYNDFVKKQKN 1560
HK + +LRR K +D LPP+II L + Y K +
Sbjct: 463 GKRAMILLKHKVLKDILLRRTKLGRAADLALPPRIITLRRDTLDVKEFDYYESLYKNSQA 522
Query: 1561 VVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVL--NSSHPQFQQVQSYLSQTGMDL- 1617
IE + N HIF L +R+ +HP LV+ NSS V S+ L
Sbjct: 523 EFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANANLVDENKSEQECGLC 582
Query: 1618 HD-------------------IGHAPKL-----EALKTLLLECGIGIQDVEKKSNKN--- 1650
HD IG + L LL D E K++K
Sbjct: 583 HDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTCSKLLTVDWTTKADTEHKASKTTLK 642
Query: 1651 ----PSIDNVIS----QHRVLIFCQLKDMLDMVENDLLKKHLP----------------- 1685
SI N I Q I +++ MVE D K +
Sbjct: 643 GFRASSILNRIKLDDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGK 702
Query: 1686 -SVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWN 1744
V+ ++L GS+ R + KF EDP A V ++ WN
Sbjct: 703 CGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWN 762
Query: 1745 PMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSM 1804
P + QA DR HR+GQ K + V R I + T+EE+I+ LQK K + V +G +
Sbjct: 763 PAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAIGKL 822
Query: 1805 NTHQLLDLF 1813
+ LF
Sbjct: 823 TEEDMRFLF 831
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 99.4 bits (246), Expect = 5e-20
Identities = 88/341 (25%), Positives = 138/341 (39%), Gaps = 65/341 (19%)
Query: 1308 GILCDDMGLGKTLQTICIIASDQY------------------------LRSEDYKKT--- 1340
GIL D MGLGKT+ TI ++ + + L S K T
Sbjct: 415 GILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKFL 474
Query: 1341 --------QSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQV 1392
Q + G W+ E + ++ ++ VY R +
Sbjct: 475 GFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLL 534
Query: 1393 PTADIVVTSYDVARNDVDFLKKYDYN--------YCVLDEGHIIKNSQSKLAKAVKLINS 1444
+D+V+T+Y V ++ D+ VLDE H IKNS+S+++ A + +
Sbjct: 535 SQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVA 594
Query: 1445 NHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPI--ASSRNSKTSSKXXX 1502
+ R LTGTPIQNN+ +L+SL FL GT + + KP R K
Sbjct: 595 DRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSI-- 652
Query: 1503 XXXXXXXXXHKQVLPFMLRRLKEEV------LSDLPPKIIQDYYCELSDLQKQLYNDFVK 1556
+ P MLRR K + LPP + YCELS+ ++ Y+ K
Sbjct: 653 ------------LKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFK 700
Query: 1557 KQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLN 1597
+ K ++ +E + N I + L +R+ C+HP LV++
Sbjct: 701 RSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMS 741
Score = 75.9 bits (185), Expect = 6e-13
Identities = 43/140 (30%), Positives = 73/140 (51%), Gaps = 3/140 (2%)
Query: 1658 SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCX 1717
S + ++F Q LD+++ L + + +F+RLDG++ + R+KV+++F+ED SI
Sbjct: 878 SGSKSILFSQWTAFLDLLQIPLSRNNF---SFVRLDGTLSQQQREKVLKEFSEDGSILVL 934
Query: 1718 XXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEE 1777
A ++ WNP + QA+ R HR+GQ K V + R I KGT+EE
Sbjct: 935 LMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEE 994
Query: 1778 KIMGLQKFKMNIASTIVNQQ 1797
++ +Q K + S + Q
Sbjct: 995 RMEAVQARKQRMISGALTDQ 1014
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 93.2 bits (230), Expect = 4e-18
Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 50/346 (14%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
P + TL ++Q++G+ WL L + G IL DDMGLGKT+Q + ++ +
Sbjct: 383 PAGLIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQALALLVTRP-------P 435
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGHWEQEF-QQYSPTLNVLVYAG-GPSVRYPLQGQVPTAD 1396
+++S KT W E + +P+ VY G S ++ + Q+ + D
Sbjct: 436 ESKSVKTTLIITPVSLLQ----QWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYD 491
Query: 1397 IVVTSYDVA----RNDVDF---------LKKYDY--------NYCVLDEGHIIKNSQSKL 1435
IV+T+Y+V +N + + +KK+++ +LDE IKN +
Sbjct: 492 IVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRVILDEAQTIKNRNTLA 551
Query: 1436 AKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSK 1495
A+ L+ S +R L+GTP+QN V E +SL FL F + F P++S+ N+
Sbjct: 552 ARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTS 611
Query: 1496 TSSKXXXXXXXXXXXXHKQVLPFMLRRLKE-----EVLSDLPPKIIQDYYCELSDLQKQL 1550
K K VL LRR K + + LPPK +LS + +
Sbjct: 612 APMKRFRGLL-------KAVL---LRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEF 661
Query: 1551 YNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVL 1596
YN + + K ++ + + L +R+ C HP L++
Sbjct: 662 YNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLIV 707
Score = 78.2 bits (191), Expect = 1e-13
Identities = 46/172 (26%), Positives = 83/172 (47%), Gaps = 4/172 (2%)
Query: 1643 VEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQ 1702
+EK N I ++LIF Q L++ ++ + ++ G + + +R
Sbjct: 867 IEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQE---GIKYLMYTGGLSTAERN 923
Query: 1703 KVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKK 1762
+ + F DP++ A+ VI ++ WNP + QA+DRAHR+GQ K
Sbjct: 924 QALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDK 983
Query: 1763 VVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQN-AGLGSMNTHQLLDLF 1813
VN+ RI+T T+EE+++ LQ K + + + ++ + +NT +L LF
Sbjct: 984 PVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLNTKELSFLF 1035
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 92.0 bits (227), Expect = 8e-18
Identities = 79/336 (23%), Positives = 146/336 (42%), Gaps = 36/336 (10%)
Query: 1286 TLRKYQQDGVNWLAFLNKYH-LHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEK 1344
+L +Q +G W+ + + G++ DDMGLGKT+QTI ++ + + + +KT
Sbjct: 249 SLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLLTQK--SQDPLRKTN--- 303
Query: 1345 TRXXXXXXXXXXXXTGHWEQEFQ-QYSPTLNVLVYAGGPSVRYPLQG-QVPTADIVVTSY 1402
W +E + P+ + VY S + L ++ D+V+T+Y
Sbjct: 304 ------LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTY 357
Query: 1403 -----DVARNDVD--------------FLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLIN 1443
++ +ND L + + VLDE H I+N + AK ++
Sbjct: 358 SMLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLD 417
Query: 1444 SNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXX 1503
+ +R L+GTPIQN++ E +SL FL +F + ++P+ S R +
Sbjct: 418 AKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYRADIVEAALKRL 477
Query: 1504 XXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVE 1563
++ + L + +LPPK I+ L ++ LYN+ + +++V+
Sbjct: 478 RILLASTVFRRTKETRVNNLP---IVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVD 534
Query: 1564 KDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSS 1599
N ++ + +L +R+ C HP LV +SS
Sbjct: 535 NYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSS 570
Score = 84.3 bits (207), Expect = 2e-15
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXX 1720
++L++ Q L +V + L L ++ +R DG++ + RQK + FN D +
Sbjct: 743 KILVYSQFSQYLCLVSHML---KLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVS 799
Query: 1721 XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIM 1780
A+ VI E +NP + QA+DR HRLGQ+K V VYR ITK T+EE+I+
Sbjct: 800 LKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIV 859
Query: 1781 GLQKFKMN-IASTIVNQQNAGLGSMNTHQLLDLF 1813
+Q+ K + + + +N L ++ +LL LF
Sbjct: 860 SVQRKKRQLVKEALDSNENNPLSRLDKEELLYLF 893
>7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1534
Score = 90.9 bits (224), Expect = 2e-17
Identities = 60/209 (28%), Positives = 99/209 (46%), Gaps = 11/209 (5%)
Query: 1389 QGQVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRL 1448
+G V D + +S D+ + L K + + DEGH IKNS + ++ A+K I + R+
Sbjct: 528 KGSVIRPDGMDSSSDLMNLVYEALVKPGPDLVICDEGHRIKNSHAGISLALKEIRTRRRI 587
Query: 1449 VLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXX 1508
VLTG P+QNN++E W + DF+ P +LGT F F +PI + + ++
Sbjct: 588 VLTGYPLQNNLLEYWCMVDFVRPNYLGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYRA 647
Query: 1509 XXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIEN 1568
H +L F+ RR + LP K +++ Q++LY+ F+ D+
Sbjct: 648 HVLHSLLLGFVQRRSHTVLQLTLPQKYEYVILVKMTAFQRKLYDTFM--------TDVVR 699
Query: 1569 TAEVENKQHIFQALQYMRKLCNHPSLVLN 1597
T N +A K+ NHP ++ N
Sbjct: 700 TKAFPNP---LKAFAVCCKIWNHPDVLYN 725
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 90.1 bits (222), Expect = 3e-17
Identities = 89/389 (22%), Positives = 156/389 (39%), Gaps = 66/389 (16%)
Query: 1258 REKERDFIQQMMDPSKAKPFKLPVAIKATL---------------------RKYQQDGVN 1296
RE+ER+ ++++++ A P K P+ K L + +Q DGV
Sbjct: 1510 REREREKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQ 1569
Query: 1297 WL--------AFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRX 1347
++ K G IL MGLGKTLQ + + + +K
Sbjct: 1570 FMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFL----------HTVLLCDKLDF 1619
Query: 1348 XXXXXXXXXXXTGHWEQEFQQYSPTL--------NVLVYAGGPSVR-YPLQGQVPTADIV 1398
+W EF+++ L + L P R Y LQ ++
Sbjct: 1620 STALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVM 1679
Query: 1399 VTSYDVARN-----DVDFLKKYDY----------NYCVLDEGHIIKNSQSKLAKAVKLIN 1443
+ Y++ RN +V K + ++ V DEGHI+KN S ++KA+ I
Sbjct: 1680 IIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIR 1739
Query: 1444 SNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXX 1503
S R++LTGTP+QNN++E + +F+ LG+ K F+ RF PI + + + ++
Sbjct: 1740 SRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRV 1799
Query: 1504 XXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVE 1563
++ + + R+ + LPPK ++ +Q +LY ++ V
Sbjct: 1800 MKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGN 1859
Query: 1564 KDIENTAEVENKQHIFQALQYMRKLCNHP 1592
+ K +FQ Q + ++ HP
Sbjct: 1860 NSEGGRGKAGAK--LFQDFQMLSRIWTHP 1886
Score = 73.9 bits (180), Expect = 2e-12
Identities = 47/159 (29%), Positives = 78/159 (48%), Gaps = 23/159 (14%)
Query: 1661 RVLIFCQLKDMLDMVENDLLK--------------------KHLPSVTFMRLDGSVDSRD 1700
+VL+F Q LD++E D L+ K L ++ + RLDGS ++
Sbjct: 2036 KVLVFSQSLISLDLIE-DFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQS 2094
Query: 1701 RQKVVRKFNEDPSID--CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRL 1758
R+K +FN++ ++ A+ VI + WNP D+Q++ R +R
Sbjct: 2095 RKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRF 2154
Query: 1759 GQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQ 1797
GQ K V VYR + +GT+E+KI Q K +++ +V+QQ
Sbjct: 2155 GQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQ 2193
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 90.1 bits (222), Expect = 3e-17
Identities = 89/389 (22%), Positives = 156/389 (39%), Gaps = 66/389 (16%)
Query: 1258 REKERDFIQQMMDPSKAKPFKLPVAIKATL---------------------RKYQQDGVN 1296
RE+ER+ ++++++ A P K P+ K L + +Q DGV
Sbjct: 1306 REREREKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQ 1365
Query: 1297 WL--------AFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRX 1347
++ K G IL MGLGKTLQ + + + +K
Sbjct: 1366 FMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFL----------HTVLLCDKLDF 1415
Query: 1348 XXXXXXXXXXXTGHWEQEFQQYSPTL--------NVLVYAGGPSVR-YPLQGQVPTADIV 1398
+W EF+++ L + L P R Y LQ ++
Sbjct: 1416 STALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVM 1475
Query: 1399 VTSYDVARN-----DVDFLKKYDY----------NYCVLDEGHIIKNSQSKLAKAVKLIN 1443
+ Y++ RN +V K + ++ V DEGHI+KN S ++KA+ I
Sbjct: 1476 IIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIR 1535
Query: 1444 SNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXX 1503
S R++LTGTP+QNN++E + +F+ LG+ K F+ RF PI + + + ++
Sbjct: 1536 SRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRV 1595
Query: 1504 XXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVE 1563
++ + + R+ + LPPK ++ +Q +LY ++ V
Sbjct: 1596 MKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGN 1655
Query: 1564 KDIENTAEVENKQHIFQALQYMRKLCNHP 1592
+ K +FQ Q + ++ HP
Sbjct: 1656 NSEGGRGKAGAK--LFQDFQMLSRIWTHP 1682
Score = 73.9 bits (180), Expect = 2e-12
Identities = 47/159 (29%), Positives = 78/159 (48%), Gaps = 23/159 (14%)
Query: 1661 RVLIFCQLKDMLDMVENDLLK--------------------KHLPSVTFMRLDGSVDSRD 1700
+VL+F Q LD++E D L+ K L ++ + RLDGS ++
Sbjct: 1832 KVLVFSQSLISLDLIE-DFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQS 1890
Query: 1701 RQKVVRKFNEDPSID--CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRL 1758
R+K +FN++ ++ A+ VI + WNP D+Q++ R +R
Sbjct: 1891 RKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRF 1950
Query: 1759 GQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQ 1797
GQ K V VYR + +GT+E+KI Q K +++ +V+QQ
Sbjct: 1951 GQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQ 1989
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 90.1 bits (222), Expect = 3e-17
Identities = 89/389 (22%), Positives = 156/389 (39%), Gaps = 66/389 (16%)
Query: 1258 REKERDFIQQMMDPSKAKPFKLPVAIKATL---------------------RKYQQDGVN 1296
RE+ER+ ++++++ A P K P+ K L + +Q DGV
Sbjct: 1472 REREREKLREVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQ 1531
Query: 1297 WL--------AFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRX 1347
++ K G IL MGLGKTLQ + + + +K
Sbjct: 1532 FMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFL----------HTVLLCDKLDF 1581
Query: 1348 XXXXXXXXXXXTGHWEQEFQQYSPTL--------NVLVYAGGPSVR-YPLQGQVPTADIV 1398
+W EF+++ L + L P R Y LQ ++
Sbjct: 1582 STALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQEDGGVM 1641
Query: 1399 VTSYDVARN-----DVDFLKKYDY----------NYCVLDEGHIIKNSQSKLAKAVKLIN 1443
+ Y++ RN +V K + ++ V DEGHI+KN S ++KA+ I
Sbjct: 1642 IIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIR 1701
Query: 1444 SNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXX 1503
S R++LTGTP+QNN++E + +F+ LG+ K F+ RF PI + + + ++
Sbjct: 1702 SRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRV 1761
Query: 1504 XXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVE 1563
++ + + R+ + LPPK ++ +Q +LY ++ V
Sbjct: 1762 MKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGN 1821
Query: 1564 KDIENTAEVENKQHIFQALQYMRKLCNHP 1592
+ K +FQ Q + ++ HP
Sbjct: 1822 NSEGGRGKAGAK--LFQDFQMLSRIWTHP 1848
Score = 73.9 bits (180), Expect = 2e-12
Identities = 47/159 (29%), Positives = 78/159 (48%), Gaps = 23/159 (14%)
Query: 1661 RVLIFCQLKDMLDMVENDLLK--------------------KHLPSVTFMRLDGSVDSRD 1700
+VL+F Q LD++E D L+ K L ++ + RLDGS ++
Sbjct: 1998 KVLVFSQSLISLDLIE-DFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQS 2056
Query: 1701 RQKVVRKFNEDPSID--CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRL 1758
R+K +FN++ ++ A+ VI + WNP D+Q++ R +R
Sbjct: 2057 RKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRF 2116
Query: 1759 GQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQ 1797
GQ K V VYR + +GT+E+KI Q K +++ +V+QQ
Sbjct: 2117 GQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQ 2155
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 89.7 bits (221), Expect = 4e-17
Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMF 1480
V DEGH IKN ++++ + IN+ R+VLTG P+QNN++E + + DF+ P +LGT K F
Sbjct: 461 VCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPKYLGTRKSF 520
Query: 1481 QERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYY 1540
+RF KPI + + +S + V F+ RR + LP
Sbjct: 521 IDRFEKPIKNGQCVDSSPDDVKIALQRTHVLVELVKGFVQRRTHHLLKKILPESKEYVLL 580
Query: 1541 CELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLV 1595
S +Q+QLY +FV KN + N V N F A K+ NHP ++
Sbjct: 581 LRKSQIQRQLYRNFVLWAKNEI---AANNDAVFNPLMAFSACS---KIWNHPDIL 629
Score = 79.0 bits (193), Expect = 7e-14
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHL-----------PSVTFMRLDGSVDSRDRQKVVRKFN 1709
++LIF Q LDM+E L K+ + + ++RLDG+ DR+K++ +FN
Sbjct: 795 KILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLINRFN 854
Query: 1710 EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRI 1769
+P + A+ I ++ WNP +D QA+ R +R GQ+K VYR+
Sbjct: 855 SEPGLSLFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFVYRL 914
Query: 1770 ITKGTLEEKIMGLQKFKMNIASTIVN--QQNAGLGSMNTHQLLDLFDADNI 1818
I ++E I Q K + +V+ Q +A + LL +A ++
Sbjct: 915 IMDNSMERSIFNRQISKHGLQQRVVDDAQVDANISQKELETLLMYDEAQDV 965
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 87.8 bits (216), Expect = 1e-16
Identities = 55/159 (34%), Positives = 85/159 (52%), Gaps = 7/159 (4%)
Query: 1643 VEKKSNKN-PSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDR 1701
VEK S K+ PS I + +IF Q MLD+VE L++ S+ F RLDG++ R
Sbjct: 887 VEKTSLKSTPSNGGPI---KTIIFSQWTGMLDLVELSLIEN---SIEFRRLDGTMSLIAR 940
Query: 1702 QKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQK 1761
+ V++F+ DP + A VI ++ WNP + QA+DRAHR+GQ
Sbjct: 941 DRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQT 1000
Query: 1762 KVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQNAG 1800
+ V V RI K T+E++I+ LQ+ K + ++ + + G
Sbjct: 1001 RPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGG 1039
Score = 65.1 bits (157), Expect = 1e-09
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 1403 DVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVEL 1462
D + D L K + VLDE IKN ++++A+A + + R L+GTPIQN + +L
Sbjct: 532 DSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDL 591
Query: 1463 WSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRR 1522
+S F FL K F + PI SRNS K + MLRR
Sbjct: 592 YSYFRFLKYDPYAVYKSFCHQIKGPI--SRNSLQGYKKLQAV----------LRAIMLRR 639
Query: 1523 LKEEVLS-----DLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
K +L +LPPK I + S ++ Y ++ + +N +
Sbjct: 640 TKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLESDSRSQFKAYAAAGTLNQNYAN 699
Query: 1578 IFQALQYMRKLCNHPSLV 1595
I L +R+ C+HP LV
Sbjct: 700 ILLMLLRLRQACDHPQLV 717
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 87.0 bits (214), Expect = 3e-16
Identities = 50/151 (33%), Positives = 74/151 (48%), Gaps = 4/151 (2%)
Query: 1660 HRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKF-NEDPSIDCXX 1718
H+VLIF Q+ LD++E+ L+++ T+ R+DG V RQ + +F D
Sbjct: 23 HKVLIFSQMVRCLDILEDYLIQRRY---TYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 79
Query: 1719 XXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEK 1778
ADT I + DWNP NDLQA R HR+GQ K V VYR+IT+ + E +
Sbjct: 80 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 139
Query: 1779 IMGLQKFKMNIASTIVNQQNAGLGSMNTHQL 1809
+ K+ + ++ N G+ QL
Sbjct: 140 MFDKASLKLGLDKAVLQDINRKGGTNGVQQL 170
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 87.0 bits (214), Expect = 3e-16
Identities = 93/370 (25%), Positives = 145/370 (39%), Gaps = 73/370 (19%)
Query: 1265 IQQMMDPSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKYHLH---GILCDDMGLGKTLQ 1321
+Q + P K P + L ++Q+ +NW+ K H GIL DD GLGKT+
Sbjct: 32 LQDLKQPKTEKDLP-PGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTIS 90
Query: 1322 TICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQY---SPTLNVLVY 1378
TI +I Q L+S+ K+ + + W +E ++ L+VLV+
Sbjct: 91 TISLILL-QKLKSQS-KQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVH 148
Query: 1379 AGGPSVRYPLQGQVPTADIVVTSYDVARNDVD---FLKKYD------------------- 1416
G + P + + D+V+T+Y + N+V L +YD
Sbjct: 149 HGSHRTKDPTE--IAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVG 206
Query: 1417 ------YNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLM 1470
+ VLDE H IKN ++ +AKA + + R LTGTPI+N V +L+S F FL
Sbjct: 207 ALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLR 266
Query: 1471 PGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSD 1530
F +R PI + MLRR KE
Sbjct: 267 YHPYAMCNSFHQRIKAPIDKK------------PLHGYKKLQAILRGIMLRRTKE----- 309
Query: 1531 LPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCN 1590
+Y +L + + ++ + T E+ ++ L +R+ CN
Sbjct: 310 ------WSFYRKLELNSRWKFEEYA----------ADGTLH-EHMAYLLVMLLRLRQACN 352
Query: 1591 HPSLVLNSSH 1600
HP LV SH
Sbjct: 353 HPQLVNGYSH 362
Score = 60.8 bits (146), Expect = 2e-08
Identities = 29/66 (43%), Positives = 44/66 (65%)
Query: 1733 ADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
A VI ++ WNP + QA+DRAHR+GQ + V V RI K T+EE+I+ L + K NI ++
Sbjct: 526 ASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVAS 585
Query: 1793 IVNQQN 1798
+ ++N
Sbjct: 586 ALGEKN 591
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 85.9 bits (211), Expect = 6e-16
Identities = 87/370 (23%), Positives = 159/370 (42%), Gaps = 57/370 (15%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLG----- 1475
VLDE H +N +S + K + + + R++L+GTP QNN +EL ++ P +L
Sbjct: 187 VLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLTST 246
Query: 1476 ---TEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLP 1532
+ +R K + + N++ + +L L L+E V+ P
Sbjct: 247 LKKSGMTVTKRGKKNLGNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLRECVVVLNP 306
Query: 1533 PKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHP 1592
P++ Q+ V+E IE T + K ++F+ + + HP
Sbjct: 307 PEL----------------------QRRVLES-IEVTHNRKTK-NVFETEHKLSLVSVHP 342
Query: 1593 SLVLNSSHPQFQQV---QSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNK 1649
SLV + +++ ++ L+Q L + P +++KT L + + +V K+
Sbjct: 343 SLVSRCKISEKERLSIDEALLAQ----LKKVRLDPN-QSVKTRFLMEFVELCEVIKE--- 394
Query: 1650 NPSIDNVISQHRVLIFCQLKDMLDMVENDLLK--KHLPSVTFMRLDGSVDSRDRQKVVRK 1707
+VL+F Q D L ++ L+ K P + + G ++ + RQ ++ +
Sbjct: 395 -----------KVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINE 443
Query: 1708 FNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNV 1766
FN+ S A VI ++ WNP + QA+ RA+R+GQK++V
Sbjct: 444 FNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYT 503
Query: 1767 YRIITKGTLE 1776
Y ++ KGT E
Sbjct: 504 YHLVAKGTPE 513
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 82.4 bits (202), Expect = 6e-15
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXX 1720
+ +IF Q MLD+VE +L+ + F RLDG++ R + V++F++ P +
Sbjct: 894 KTIIFSQWTGMLDLVELRILES---GIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMS 950
Query: 1721 XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIM 1780
A VI ++ WNP + QA+DRAHR+GQ + V V RI K T+E++I+
Sbjct: 951 LKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRIL 1010
Query: 1781 GLQKFKMNIASTIVNQQNAG 1800
LQ+ K + ++ +++ G
Sbjct: 1011 KLQEEKRTMVASAFGEEHGG 1030
Score = 67.8 bits (164), Expect = 2e-10
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 1412 LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMP 1471
L K + VLDE IKN ++++A++ + + R L+GTPIQN + +L+S F FL
Sbjct: 537 LGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRY 596
Query: 1472 GFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLS-- 1529
K F PI SRNS K + MLRR K +L
Sbjct: 597 DPYAVYKSFYSTIKVPI--SRNSCQGYKKLQAV----------LRAIMLRRTKGTLLDGK 644
Query: 1530 ---DLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMR 1586
+LPPK++ + S ++ Y ++ + + +N +I L +R
Sbjct: 645 PIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLR 704
Query: 1587 KLCNHPSLV 1595
+ C+HP LV
Sbjct: 705 QACDHPQLV 713
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 82.0 bits (201), Expect = 8e-15
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 32/207 (15%)
Query: 1630 KTLLLECGIGIQDVEKKSNKNPSID-NVISQHR-----------------------VLIF 1665
+ ++LEC G QD +K S+D NV+ Q+R ++F
Sbjct: 342 RQVVLEC-TGRQDDPRKDLVGESVDTNVVMQYREAVGLKVDPVKQYLATMVEKGMKFVVF 400
Query: 1666 CQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXX 1725
C +M++ +E ++++P + R+DGSV S R +V+KF E+ +
Sbjct: 401 CHHTEMMESLEGFFAERNVPMI---RIDGSVPSTSRHLLVKKFQENEEVMVALLSITACS 457
Query: 1726 XXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKF 1785
V+F E WNP LQA DR HR+GQK V++ ++ KGT++E +
Sbjct: 458 TGLTLTAGRAVVFAELYWNPGVLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYVWPKLLS 517
Query: 1786 KMNIASTI---VNQ-QNAGLGSMNTHQ 1808
K+N+ ++ NQ +N G+ S Q
Sbjct: 518 KLNVLESLGVGSNQLKNVGVSSQAAGQ 544
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 82.0 bits (201), Expect = 8e-15
Identities = 57/185 (30%), Positives = 91/185 (48%), Gaps = 10/185 (5%)
Query: 1637 GIGIQDVEKKSNKNPSIDNVI--SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDG 1694
G+ I V+ N+ S+D I + + ++F Q ML+++E L+ H + + RLDG
Sbjct: 1109 GLSITPVK---NEGMSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSH---IQYRRLDG 1162
Query: 1695 SVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDR 1754
++ R K V+ FN P + A V+ ++ WNP + QA+DR
Sbjct: 1163 TMSVAARDKAVQDFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDR 1222
Query: 1755 AHRLGQKKVVNVYRIITKGTLEEKIMGL-QKFKMNIASTIVNQQNAGLGS-MNTHQLLDL 1812
AHR+GQ + V V R K T+E++I+ L QK +M +AS + S + L L
Sbjct: 1223 AHRIGQTRPVTVVRFTVKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYL 1282
Query: 1813 FDADN 1817
F AD+
Sbjct: 1283 FMADS 1287
Score = 60.8 bits (146), Expect = 2e-08
Identities = 51/189 (26%), Positives = 84/189 (43%), Gaps = 17/189 (8%)
Query: 1412 LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMP 1471
L K + VLDE IKN ++++A+A + + R L+GTPIQN++ +L+S F FL
Sbjct: 789 LAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 848
Query: 1472 GFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLS-- 1529
+ +F PI +RN + + MLRR K +L
Sbjct: 849 DPYSSYVLFCSTIKNPI--TRNPVKGYQKLQAI----------LKTVMLRRTKGSLLDGK 896
Query: 1530 ---DLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMR 1586
LPPK I+ + + ++ Y+ + + + E +N +I L +R
Sbjct: 897 PIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLR 956
Query: 1587 KLCNHPSLV 1595
+ C+HP LV
Sbjct: 957 QACDHPLLV 965
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 82.0 bits (201), Expect = 8e-15
Identities = 94/368 (25%), Positives = 156/368 (41%), Gaps = 67/368 (18%)
Query: 1283 IKATLRKYQQDGVNWLAFLNKYH---LHGILCDDMGLGKTLQTICIIASDQ---YLRSED 1336
+ +L ++Q+ ++W++ GIL DD GLGKT+ TI +I +++ YL E+
Sbjct: 538 LAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALILTERSTPYLPCEE 597
Query: 1337 YKKT----QSE-----------------KTRXXXXXXXXXXXXTG---HWEQEFQQ---Y 1369
K QS+ K R T W E ++
Sbjct: 598 DSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLIVCPTSLMRQWADELRKKVTL 657
Query: 1370 SPTLNVLVYAGGPSVRYPLQGQVPTADIVVTSYDVARN-------DVDFLK----KYDYN 1418
L+VLVY G + P ++ D+V+T+Y + V+FL + +
Sbjct: 658 EAHLSVLVYHGCSRTKDP--HELAKYDVVITTYSLVSKRKHMDCEPVEFLSGPLAQVSWF 715
Query: 1419 YCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEK 1478
VLDE IKN +++ + A +++ R L+GTPIQN++ +L+S F FL + +
Sbjct: 716 RVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQ 775
Query: 1479 MFQERFAKPIAS--SRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLS-----DL 1531
F E PI+S KT K+V MLRR K+ +L L
Sbjct: 776 TFCETIKNPISSYPGEGYKTLQAIL-----------KKV---MLRRTKDTLLDGKPVISL 821
Query: 1532 PPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNH 1591
PPK I+ + + ++ Y+ ++ ++ E +N +I L +R+ C H
Sbjct: 822 PPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGH 881
Query: 1592 PSLVLNSS 1599
P LV + S
Sbjct: 882 PLLVSSLS 889
Score = 73.9 bits (180), Expect = 2e-12
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 1657 ISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDC 1716
++ + ++F Q MLD++E L + + R DG + R V+ FN P +
Sbjct: 1070 VAGEKAIVFTQWTKMLDLLEAGLKSS---GIQYRRFDGKMTVPARDAAVQDFNTLPDVSV 1126
Query: 1717 XXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLE 1776
A VI ++ WNP + QA+DRAHR+GQ + V V R K T+E
Sbjct: 1127 MIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVE 1186
Query: 1777 EKIMGLQKFKMN-IASTIVNQQNAGLGSMNTH 1807
++I+ LQ+ K +AS +N GS +H
Sbjct: 1187 DRILALQQKKRKMVASAFGEHEN---GSRESH 1215
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 81.6 bits (200), Expect = 1e-14
Identities = 87/359 (24%), Positives = 148/359 (40%), Gaps = 54/359 (15%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFL-NKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
P + L K+Q+ G++WL + N G+L DDMGLGKT+Q I ++ ++ RSE+ K
Sbjct: 936 PEDMTVNLLKHQRLGLHWLLQVENSAKKGGLLADDMGLGKTIQAIALMLAN---RSEESK 992
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTADIV 1398
KT G E + ++ + ++ G + + + D V
Sbjct: 993 C----KTNLIVAPVSVLRVWKGELETKVKKRAK-FTTFIFGGSGNGKVKHWRDLARYDAV 1047
Query: 1399 VTSYDVARNDVD--FLKKYDYN--------------------------YC--------VL 1422
+ SY N+ + KK D +C +L
Sbjct: 1048 LVSYQTLANEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILL 1107
Query: 1423 DEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQE 1482
DEG IKN ++ +KA IN +R VL+GTPIQN++ EL+SL FL E+ F+
Sbjct: 1108 DEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHKEQRFKL 1167
Query: 1483 RFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLS-----DLPPKIIQ 1537
+ ++ + ++ + MLRR K + + +LPPKI++
Sbjct: 1168 DIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAI---MLRRSKADKIDGKPLLELPPKIVE 1224
Query: 1538 DYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVL 1596
L + + Y K + + +K + N+ + + L +R+ C H LV+
Sbjct: 1225 VDESRLKGEELKFYTALESKNQALAKKLLNNSTR-GSYSSVLTLLLRLRQACCHSELVV 1282
Score = 65.1 bits (157), Expect = 1e-09
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Query: 1622 HAPKLEALK--TLLLECGIGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDL 1679
+ P E+L+ T + +C IQ V +S + +++IF Q +++E+ L
Sbjct: 1432 YVPNFESLEPSTKIEQCIQVIQRVFDES----------ATEKIIIFSQFTTFFEILEHFL 1481
Query: 1680 LKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFV 1739
K+ + +++ GS++++ R V+ +F DP A+ V+ V
Sbjct: 1482 --KNKLNFPYLKYIGSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVIV 1539
Query: 1740 EHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN 1795
+ WNP + QA DR +R+ Q K V V+++ K ++E++I LQK K + + ++
Sbjct: 1540 DPFWNPYVEEQAQDRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMD 1595
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 78.2 bits (191), Expect = 1e-13
Identities = 65/272 (23%), Positives = 116/272 (41%), Gaps = 18/272 (6%)
Query: 1335 EDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPT---LNVLVYAGGPSVRYPLQGQ 1391
E KKT E+ R +W +F Q+ + LN VY G +R P
Sbjct: 464 EGSKKTDVEE-RPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREP--AL 520
Query: 1392 VPTADIVVTSYDVARNDVDF-----LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNH 1446
+ DIV+T+Y++ +D L + +LDEGH I+N ++ KAV + S
Sbjct: 521 LSKQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESER 580
Query: 1447 RLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXX 1506
R VLTGTPIQN++ +LWSL FL + + +P+ T
Sbjct: 581 RWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPV-------TMGDEGGLRRL 633
Query: 1507 XXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDI 1566
+ + ++K + + +LP + + + LSD ++++Y + + + +
Sbjct: 634 QSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYF 693
Query: 1567 ENTAEVENKQHIFQALQYMRKLCNHPSLVLNS 1598
+ + + L +R++C H L+ N+
Sbjct: 694 NEGTVLAHYADVLGLLLRLRQICCHTYLLTNA 725
Score = 57.0 bits (136), Expect = 3e-07
Identities = 41/145 (28%), Positives = 64/145 (43%), Gaps = 12/145 (8%)
Query: 1649 KNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKF 1708
KNP+I + L+ Q L ++E L F RLDGS+ + R + ++ F
Sbjct: 848 KNPNIKS-------LVVSQFTTFLSLIEIPLKAS---GFVFTRLDGSMAQKKRVESIQCF 897
Query: 1709 N--EDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNV 1766
E S A V ++ WNP + Q DR HRLGQK+ V +
Sbjct: 898 QNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVII 957
Query: 1767 YRIITKGTLEEKIMGLQKFKMNIAS 1791
+ I K ++EE ++ +Q K +A+
Sbjct: 958 TKFIVKDSVEENMLKIQNKKRELAA 982
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 78.2 bits (191), Expect = 1e-13
Identities = 130/539 (24%), Positives = 201/539 (37%), Gaps = 86/539 (15%)
Query: 1279 LPVAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYK 1338
LP + L +Q DG L F + + D+MGLGKTLQ I I ++
Sbjct: 196 LPRKLVNALLPFQLDG---LRFGLRRGGRCFIADEMGLGKTLQAIAIAGC--FISEGSIL 250
Query: 1339 KTQSEKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLN------VLVYAGGPSV--RYPLQG 1390
R W +E +++ P+ V + P+ R+P
Sbjct: 251 VVCPAVLRFT-------------WAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWP--- 294
Query: 1391 QVPTADIVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSK-----------LAKAV 1439
+VV SY + ++ + + ++ ++DE H ++ S+ K +A+ V
Sbjct: 295 -----KVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKV 349
Query: 1440 KLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSK-TSS 1498
K H ++L+GTP + PG LG +K FAK +
Sbjct: 350 K-----HIILLSGTPSVSR------------PGLLGKDKY---EFAKTYCEVGLVRGIQG 389
Query: 1499 KXXXXXXXXXXXXHKQVL---PFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQLYNDFV 1555
K +L M+RRLK+ +L+ LPPK Q L L V
Sbjct: 390 KIFQDFSKGTRLLELNILLNQTVMIRRLKQHLLTQLPPKRRQIVTILLKKSDIALAMAIV 449
Query: 1556 KKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGM 1615
+ K + I AEV K H H + NS P + + +
Sbjct: 450 SEAKKQKDGAI---AEVTEKSHEPDQNARGSNEAGHVNAE-NSDGPNSDKENQLCGK--L 503
Query: 1616 DLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPS-IDNVISQHRVLIFCQLKDMLDM 1674
+G A KL A + L + + + P ID S ++++F +LD
Sbjct: 504 SYQQLGIA-KLSAFREWL-----SLHPLLSGLDYTPEEIDGDRSSTKMVVFAHHHKVLDG 557
Query: 1675 VENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXAD 1734
++ + K + F+R+DG+ RDRQ V+ F + A
Sbjct: 558 IQEFICDK---GIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGVEAGGVGLDFSAAQ 614
Query: 1735 TVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEE-KIMGLQKFKMNIAST 1792
V+F+E P LQA DRAHR GQ VNVY K T++E L K I+ST
Sbjct: 615 NVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQNLNKKLHRISST 673
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 77.8 bits (190), Expect = 2e-13
Identities = 101/431 (23%), Positives = 172/431 (39%), Gaps = 75/431 (17%)
Query: 1253 ELLRGREKERDFIQQMMDPSKA-------KPFKLPVAIKATLRKYQQDGVNWL---AFLN 1302
E+L G +R ++DP + KP ++ ++ L+ +Q G+ ++ AF +
Sbjct: 422 EMLTGTSSQRKLKSVVLDPDSSTVDEESKKPVEVHNSLVRILKPHQAHGIQFMYDCAFES 481
Query: 1303 KYHLH-----GILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXX 1357
L GIL MGLGKTLQ I +L + + EK +
Sbjct: 482 LDRLDTEGSGGILAHCMGLGKTLQVIT------FLHTVLMHEKIGEKCKRVLVVVPKNVI 535
Query: 1358 XTGHWEQEFQQYS-------PTLNVLVYAGGPSV---RYPLQG--QVPTADIVVTSYDVA 1405
+W +EFQ++ T++V ++ R L+ T +++ YD+
Sbjct: 536 I--NWFKEFQKWLVDNDEELDTIDVNELDSYKTIEDRRRALKAWHSSKTPSVMIIGYDLF 593
Query: 1406 R---------------------NDVDFLKKYDYN----YCVLDEGHIIKNSQSKLAKAVK 1440
R + +KY N V DE H +KN S L+K +
Sbjct: 594 RILTVEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPDMVVCDEAHKLKNDDSALSKCMV 653
Query: 1441 LINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKX 1500
I + R+ LTGTP+QNN++E + +F+ PG LGT+ F RF I R S
Sbjct: 654 KILTKRRICLTGTPLQNNLMEYHCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLE 713
Query: 1501 XXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYYCELSDLQKQ--LYNDFVKKQ 1558
+ + + R+ + +PPK Q+Y + ++Q LYN F+
Sbjct: 714 VSFMKRRCHVLYDHLKKCVDRKDYRVLTEAIPPK--QEYVINVRQTERQCALYNAFL--- 768
Query: 1559 KNVVEKDIENTAEVENKQHIFQALQYMRKLCNHP-SLVLNSSHPQFQQVQSYLSQTGMDL 1617
N + D + + H+F ++ HP LVL+ + ++V ++ D
Sbjct: 769 -NDIVGDSGLSKRLLPDYHMFS------RIWTHPYQLVLHEQRMERERVMREDAEEEADF 821
Query: 1618 HDIGHAPKLEA 1628
D G + E+
Sbjct: 822 IDDGDGSESES 832
Score = 62.0 bits (149), Expect = 9e-09
Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 2/110 (1%)
Query: 1689 FMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXX--XADTVIFVEHDWNPM 1746
+M +DGSV S R V FN+ ++ A+ VI + WNP
Sbjct: 1016 YMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDACWNPS 1075
Query: 1747 NDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
+D Q++ R +R GQ K V +YR I +GT+EE+I Q K + + +V++
Sbjct: 1076 HDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDE 1125
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 75.1 bits (183), Expect = 1e-12
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 1280 PVAIKATLRKYQQDGVNWLAFLN-KYHLHGILCDDMGLGKTLQTICII------------ 1326
PV +K +L +Q+ + W+++ K GIL DDMGLGKTL I +
Sbjct: 432 PVGLKVSLMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEMSEG 491
Query: 1327 ---ASDQYLRSEDYKKTQS---------EKTRXXXXXXXXXXXXTGHWEQEFQQYSPTLN 1374
+SD + KK +S + TR WE E +
Sbjct: 492 KDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQWESEVESKVSRQK 551
Query: 1375 VLVYAGGPSVRYPLQGQVPTADIVVTSYDVARNDVDFLKKY---DYNYCVLDEGHIIKNS 1431
+ V + R + DIVVT+Y + + L + +LDE H+++N
Sbjct: 552 LTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSLSAVFGVKWRRIILDEAHVVRNH 611
Query: 1432 QSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFL 1469
+S+ + AV + +R LTGTPIQN +++++L FL
Sbjct: 612 KSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFL 649
Score = 65.9 bits (159), Expect = 6e-10
Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 4/138 (2%)
Query: 1658 SQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNE-DPSIDC 1716
S + ++ Q +LD++ + L K V + L+G++ ++RQ +V +FN+ +
Sbjct: 907 SDDKAIVVSQWTSVLDILRDHLSKD---GVATLSLNGTIPVKNRQDIVNEFNDRNNQKRV 963
Query: 1717 XXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLE 1776
A+ ++ ++ WNP + QA DR +R+GQKK V +Y+ + T+E
Sbjct: 964 LLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVE 1023
Query: 1777 EKIMGLQKFKMNIASTIV 1794
++I GLQ K+++A ++
Sbjct: 1024 QRIKGLQDKKLDLADGVL 1041
>At5g20420 [L] KOG0390 DNA repair protein SNF2 family
Length = 1261
Score = 74.7 bits (182), Expect = 1e-12
Identities = 92/384 (23%), Positives = 160/384 (40%), Gaps = 64/384 (16%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKM- 1479
VLDEGH ++++S+L KA+ + ++ R++L+GT QNN E ++ P F+ M
Sbjct: 853 VLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLME 912
Query: 1480 FQERF--------AKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSD- 1530
++F A + +R K + ML+ + + +
Sbjct: 913 LDQKFKTNHGVNKAPHLLENRARKLFLDIIAKKIDASVGDERLQGLNMLKNMTNGFIDNY 972
Query: 1531 ----------LPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQ 1580
LP I +D+Q ++ + K ++V++ EVE Q
Sbjct: 973 EGSGSGSGDALPGLQIYTLVMNSTDIQHKI----LTKLQDVIKTYFGYPLEVE-LQITLA 1027
Query: 1581 ALQYMRKLCNHPSLVLNSSH-PQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIG 1639
A+ HP LV +S+ +F Q LS+ G HD K+ + L+
Sbjct: 1028 AI--------HPWLVTSSNCCTKFFNPQE-LSEIGKLKHDAKKGSKVMFVLNLIFR---- 1074
Query: 1640 IQDVEKKSNKNPSIDNVISQHRVLIFCQ----LKDMLDMVENDLLKKHLPSVTFMRLDGS 1695
V+ + ++LIFC ++ ++ EN + + + L G
Sbjct: 1075 ----------------VVKREKILIFCHNIAPIRMFTELFEN--IFRWQRGREILTLTGD 1116
Query: 1696 VDSRDRQKVVRKFNE--DPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMD 1753
++ +R +V+ KF E +PS A VI ++ +WNP QA+
Sbjct: 1117 LELFERGRVIDKFEEPGNPS-RVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIA 1175
Query: 1754 RAHRLGQKKVVNVYRIITKGTLEE 1777
RA R GQ+KVV VY+++++GTLEE
Sbjct: 1176 RAFRPGQQKVVYVYQLLSRGTLEE 1199
>At3g42670 [L] KOG0390 DNA repair protein SNF2 family
Length = 1256
Score = 74.7 bits (182), Expect = 1e-12
Identities = 94/408 (23%), Positives = 164/408 (40%), Gaps = 72/408 (17%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMF 1480
VLDEGH ++++S+L KA+ ++++ R++L+GT QNN E ++ P
Sbjct: 847 VLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARP--------- 897
Query: 1481 QERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYY 1540
+F + + K + +Q P +L + D+ K I
Sbjct: 898 --KFVHEVLVELDKKFQTNQA-----------EQKAPHLLENRARKFFLDIIAKKIDT-- 942
Query: 1541 CELSDLQKQLYNDFVKKQKNVVEKDIEN-TAEVENKQHIFQALQYMRKLCNHPSLVLNSS 1599
++ D + Q N +N+ I+N + LQ L N +
Sbjct: 943 -KVGDERLQGLNML----RNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDV----Q 993
Query: 1600 HPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTL----------------------LLECG 1637
H ++Q+ +S G+ +LE L TL LLE
Sbjct: 994 HKSLTKLQNIMSTYH------GYPLELELLITLAAIHPWLVKTTTCCAKFFNPQELLEIE 1047
Query: 1638 IGIQDVEKKSNKNPSID---NVISQHRVLIFCQ----LKDMLDMVENDLLKKHLPSVTFM 1690
D +K S ++ V+ + ++LIFC ++ L++ EN K +
Sbjct: 1048 KLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKR--GRELL 1105
Query: 1691 RLDGSVDSRDRQKVVRKFNEDPSID-CXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDL 1749
L G ++ +R +V+ KF E A VI ++ +WNP
Sbjct: 1106 TLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTK 1165
Query: 1750 QAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQQ 1797
QA+ RA R GQ+KVV VY+++++GTLEE +K ++S I +++
Sbjct: 1166 QAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEE 1213
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 73.6 bits (179), Expect = 3e-12
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 60/278 (21%)
Query: 1519 MLRRLKEEVLSDLPPKIIQDYYCEL-SDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQH 1577
M+RRLK EVL+ LPPK+ Q +L S K+L F + +K I T +
Sbjct: 1 MIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEK------IMRTPNSGAMET 54
Query: 1578 IFQALQYMRKLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECG 1637
+ + M K Q+ +++ G
Sbjct: 55 VMGLITRMFK-------------------QTAIAKAG----------------------- 72
Query: 1638 IGIQDVEKKSNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVD 1697
++D K +N S+ + L+F ML +++ ++R+DGSV
Sbjct: 73 -AVKDYIKMMLQNDSL-------KFLVFAHHLSMLQACTEAVIEN---KTRYIRIDGSVS 121
Query: 1698 SRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHR 1757
S +R +V +F +DP A V+F E W+P + QA DRAHR
Sbjct: 122 SSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHR 181
Query: 1758 LGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVN 1795
+GQ VN++ +I GTL+ + G+ K + + +N
Sbjct: 182 IGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLN 219
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 72.4 bits (176), Expect = 6e-12
Identities = 43/156 (27%), Positives = 74/156 (46%), Gaps = 9/156 (5%)
Query: 1659 QHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXX 1718
+ + L+F K +LD + +L +KH V +R+DGS S +R+ + ++F
Sbjct: 725 REKFLVFAHHKVVLDAITQELERKH---VQHIRIDGSTSSAEREDLCQQFQLSERHAVAV 781
Query: 1719 XXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEK 1778
AD V+F E WNP +QA DR HR+GQ V ++ ++ KGT ++
Sbjct: 782 LSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDY 841
Query: 1779 IMGLQKFKMNIASTIVNQQNAGLGSMNTHQLLDLFD 1814
+ L + K+ + + AGL N ++ + D
Sbjct: 842 LWPLIQEKIKVLA------EAGLSETNFSEMTESTD 871
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 72.4 bits (176), Expect = 6e-12
Identities = 85/381 (22%), Positives = 150/381 (39%), Gaps = 43/381 (11%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFLGTEKMF 1480
VLDEGH +N S + K + + + R+ L+GT QNN EL ++ P T
Sbjct: 745 VLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARPADKDTISSR 804
Query: 1481 QERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVLSDLPPKIIQDYY 1540
+K + + + + L+ + + I+Q+
Sbjct: 805 IHELSKCSQEGEHGRVNEENRIVD---------------LKAMIAHFVHVHEGTILQESL 849
Query: 1541 CELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLVLNSSH 1600
L D L F +QK ++++ ++ Q+ F+ + + HPSL L +
Sbjct: 850 PGLRDCVVVLNPPF--QQKKILDR-------IDTSQNTFEFEHKLSAVSVHPSLYLCCNP 900
Query: 1601 PQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDNVISQH 1660
+ + + IG A L LK L L+ G++ K I + +
Sbjct: 901 TKKEDLV------------IGPAT-LGTLKRLRLKYEEGVKT--KFLIDFIRISGTVKE- 944
Query: 1661 RVLIFCQLKDMLDMVENDLLKK--HLPSVTFMRLDGSVDSRDRQKVVRKFNE-DPSIDCX 1717
+VL++ Q D L ++ L+ + + + G V+ RDRQ ++ FN+ D
Sbjct: 945 KVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVL 1004
Query: 1718 XXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEE 1777
A V+ ++ WNP + QA+ RA R+GQK+ V +Y ++ K T E
Sbjct: 1005 LASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEW 1064
Query: 1778 KIMGLQKFKMNIASTIVNQQN 1798
Q K I+ + + N
Sbjct: 1065 NKYCKQSEKHRISELVFSSTN 1085
>Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 220
Score = 72.0 bits (175), Expect = 8e-12
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 42/202 (20%)
Query: 1294 GVNWLAFLNKYHLHG--ILCDDMGLGKTLQTICIIA------SDQ--------YLRSEDY 1337
G NWLA ++H IL D+MGLGKT QTI + +D+ Y+ E
Sbjct: 15 GSNWLA--QRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPYVCFEQL 72
Query: 1338 KKTQSEK-TRXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGGPSVRYPLQGQVPTAD 1396
++ +E +R +Q+ +Q S
Sbjct: 73 ERRNAEICSRSFLCNICSDKEERACLQQDLKQES-----------------------RFH 109
Query: 1397 IVVTSYDVARNDVDFLKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQ 1456
+++T+Y++ D FLK + ++ V+DE H +KN S L K + + L+LTGTPIQ
Sbjct: 110 VLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQ 169
Query: 1457 NNVVELWSLFDFLMPGFLGTEK 1478
N++ EL+SL F+ P E+
Sbjct: 170 NSLQELYSLLSFVEPDLFSKEE 191
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 71.6 bits (174), Expect = 1e-11
Identities = 97/387 (25%), Positives = 150/387 (38%), Gaps = 81/387 (20%)
Query: 1275 KPFKLPVAIKATLRKYQQDGVNWLAFLNKY-HLH-----------------GILCDDMGL 1316
K FK P + + QQD VN + Y +LH GIL D+MGL
Sbjct: 477 KQFKWPNDMSWAAQNLQQDHVNVEDGIFFYANLHSGEFSLAKPILKTMIKGGILSDEMGL 536
Query: 1317 GKTLQTICIIAS--------DQYLRS--------------EDYKKTQSEKTRXXXXXXXX 1354
GKT+ ++ S D+ L +D KK + KT
Sbjct: 537 GKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKKPYASKTTLIVVPMSL 596
Query: 1355 XXXXTGHWEQEFQQY--SPTLNVLVYAGG--PSVRYPLQGQVPTADIVVTSYDVARN--- 1407
W EF + SP + VY GG S++ L +V+T+Y + +N
Sbjct: 597 LT----QWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLTKTKTPPTVVLTTYGIVQNEWT 652
Query: 1408 ----------DVDF---LKKYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTP 1454
DV+ L ++ ++DEGH I+N + +KAV + + VLTGTP
Sbjct: 653 KHSKGRMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTP 712
Query: 1455 IQNNVVELWSLFDFLMPGFLGTEKMFQERFAKPIASSRNSKTSSKXXXXXXXXXXXXHKQ 1514
I N + +L+SL FL + Q + K S+ + K
Sbjct: 713 IINRLDDLYSLVK-----FLELDPWRQINYWKTFVSTPFESKNYKQAFDVVNAI------ 761
Query: 1515 VLPFMLRRLKE------EVLSDLPPKIIQDYYCELSDLQKQLYNDFVKKQKNVVEKDIEN 1568
+ P +LRR K+ + L +LPPK + S Q LY + K + V+ I
Sbjct: 762 LEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIAR 821
Query: 1569 TAEVENKQHIFQALQYMRKLCNHPSLV 1595
++ I + +R++C HP L+
Sbjct: 822 GDLLKKYSTILVHILRLRQVCCHPGLI 848
Score = 53.1 bits (126), Expect = 4e-06
Identities = 69/330 (20%), Positives = 127/330 (37%), Gaps = 32/330 (9%)
Query: 1471 PGFLGTEKMFQERFAK--PIASSRNSKTSSKXXXXXXXXXXXXHKQVLPFMLRRLKEEVL 1528
PG +G++ E +K + + + + S K+ L M++RLK +
Sbjct: 845 PGLIGSQDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYP 904
Query: 1529 SDLPPKIIQDYYC--ELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMR 1586
+ + ++ C E DL K L F + + EK + E +N +++ R
Sbjct: 905 DNKSFQSLECSICTTEPMDLDKAL---FTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCR 961
Query: 1587 KLCNHPSLVLNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKK 1646
+ L+ VQ+ + ++ A K + LL E + +QD
Sbjct: 962 NQIDACRLLA--------LVQTNSNSKNLEFKPYSPASKSSKITALLKELQL-LQDSS-- 1010
Query: 1647 SNKNPSIDNVISQHRVLIFCQLKDMLDMVENDLLKKHLPSVT-FMRLDGSVDSRDRQKVV 1705
+ +V+IF Q LD++E +L V + DG + ++R V+
Sbjct: 1011 -----------AGEQVVIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVL 1059
Query: 1706 RKF--NEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKV 1763
F + A ++ W+P + QA+DR HR+GQ
Sbjct: 1060 ADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNS 1119
Query: 1764 VNVYRIITKGTLEEKIMGLQKFKMNIASTI 1793
V V R I + ++EEK++ +Q+ K I +
Sbjct: 1120 VKVMRFIIQDSIEEKMLRIQEKKRTIGEAM 1149
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 68.6 bits (166), Expect = 9e-11
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 1733 ADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIAST 1792
ADTVI + DWNP DLQA DRAHR+GQ K V + R+IT+ ++EE I+ ++K+++
Sbjct: 25 ADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGK 84
Query: 1793 IV 1794
++
Sbjct: 85 VI 86
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 67.8 bits (164), Expect = 2e-10
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 1689 FMRLDGSVDSRDRQKVVRKFNEDPS-IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMN 1747
+ + G V +DRQ+ V FN++ + +I V+ WNP
Sbjct: 382 YTSITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNHLIMVDLHWNPAL 441
Query: 1748 DLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIV-NQQNAGLGSMNT 1806
+ QA DR +R+GQKK V+++R+I K T+E+++M LQ+ K+ +A++++ G+ +
Sbjct: 442 EQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEGSATRGMNKLTN 501
Query: 1807 HQLLDLFDAD 1816
+ LF D
Sbjct: 502 SDIRTLFGLD 511
Score = 66.6 bits (161), Expect = 4e-10
Identities = 61/226 (26%), Positives = 95/226 (41%), Gaps = 30/226 (13%)
Query: 1255 LRGREKERDFIQQMMD-----PSKAKPFKLPVAIKATLRKYQQDGVNWLAFLNKY-HLHG 1308
L+ E QQ+ D P++ + P L +Q+ G+ WL + H G
Sbjct: 107 LKINETFNKLTQQLADATHTIPAETDLTETPDGFLVDLMPHQKAGLCWLLWRESQPHSGG 166
Query: 1309 ILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKTRXXXXXXXXXXXXTGHWEQEFQQ 1368
IL DMGLGKTL I +I ++K + + HWE E +
Sbjct: 167 ILGGDMGLGKTLSMISLIV---------HQKAARKTRKDAGDDAIAPESLVHHWEAEIAR 217
Query: 1369 Y--SPTLNVLVYAGGP------------SVRYPLQGQV-PTADIVVTSYDVARNDVDFLK 1413
L+VLVY G + Y L+ + P + + A + L
Sbjct: 218 RLKQDLLSVLVYHGNRRHINPKDLKKHIELDYDLEDEHNPCSKLRPRVCPKADKNSSPLA 277
Query: 1414 KYDYNYCVLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNV 1459
+ ++Y +LDE HIIKN ++ ++A I++ R L+GTPI NN+
Sbjct: 278 RIAWSYVILDEAHIIKNRNAQCSEAACKISAFSRWCLSGTPIHNNM 323
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 67.0 bits (162), Expect = 3e-10
Identities = 82/365 (22%), Positives = 144/365 (38%), Gaps = 30/365 (8%)
Query: 1421 VLDEGHIIKNSQSKLAKAVKLINSNHRLVLTGTPIQNNVVELWSLFDFLMPGFL--GTEK 1478
+LDEGH +N + L +++ + + ++VL+GT QN+V E++++ + + P FL T K
Sbjct: 490 ILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSK 549
Query: 1479 MFQERF-AKPIASSRNSKTSSKXXXXXXXXXXXXH--KQVLPFMLRRLKEEVLSDLPPKI 1535
+R A R T S H ++ F ++ + L ++ K+
Sbjct: 550 SAVKRILAYTPCDVRGRLTGSNSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKV 609
Query: 1536 IQDYYCELSDLQKQLYNDFVKKQKNVVEKDIENTAEVENKQHIFQALQYMRKLCNHPSLV 1595
+ Y + D L + V N+ K + ++ ++ F+ + HP L
Sbjct: 610 LHYYKGDFLDELPGLADFTVVL--NLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKLK 667
Query: 1596 LNSSHPQFQQVQSYLSQTGMDLHDIGHAPKLEALKTLLLECGIGIQDVEKKSNKNPSIDN 1655
+ F +S T MD E ++ L L G+ + N S
Sbjct: 668 V------FSDKSDDVSDTTMD----------EMVEKLDLNEGVKAKFFLNLINLCDS--- 708
Query: 1656 VISQHRVLIFCQLKDMLDMVEN--DLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPS 1713
+ ++L+F Q L +E L K L G+ S R+ + FN P
Sbjct: 709 --AGEKLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPD 766
Query: 1714 IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKG 1773
A ++ ++ NP QA+ RA R GQKK+V+ YR+I
Sbjct: 767 AKIFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGS 826
Query: 1774 TLEEK 1778
+ EE+
Sbjct: 827 SPEEE 831
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 65.1 bits (157), Expect = 1e-09
Identities = 38/143 (26%), Positives = 72/143 (49%), Gaps = 7/143 (4%)
Query: 1679 LLKKHLPSVTFMRLD--GSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXXXXXXADTV 1736
+++K L +++ LD G + +++R+ V+R FN + A+ +
Sbjct: 822 IVRKRLQDLSWETLDFNGQLTAKEREIVLRDFNANNEKRVLLLSLTAGGVGLNLNVANHM 881
Query: 1737 IFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTIVNQ 1796
+ V+ WNP + QA DR +R GQ K +YR + + T+E++I LQ K+ IA ++ +
Sbjct: 882 LIVDLHWNPQLERQAQDRIYRYGQTKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVLPE 941
Query: 1797 QNAGL-----GSMNTHQLLDLFD 1814
+ + G +N +L LF+
Sbjct: 942 EGGEVTKCVGGGLNLAELKKLFE 964
Score = 54.7 bits (130), Expect = 1e-06
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 13/88 (14%)
Query: 1396 DIVVTSYDVARNDVDFLKKYD---------YNYCVLDEGHIIKNSQSKLAKAVKLINSNH 1446
D+V+TSY++ N+ LK+Y +N +LDE HII+NS++ +V + ++
Sbjct: 439 DLVITSYNLVVNE---LKRYGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHC 495
Query: 1447 RLVLTGTPIQNNVVELWSLFDFL-MPGF 1473
LTGTP+QN V++++L F+ +P F
Sbjct: 496 HWALTGTPVQNRGVDVFALLRFVNVPNF 523
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 63.5 bits (153), Expect = 3e-09
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXX 1720
+VLIF + +LD ++ ++ K+ L S+ R+DG S R + F D +I
Sbjct: 494 KVLIFAHHQIVLDTIQVEVNKRKLGSI---RIDGKTPSHRRTALCDSFQTDDNIRVAVLS 550
Query: 1721 XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIM 1780
A V+F E +NP +QA DRAHR+GQK V V +I K T ++ +
Sbjct: 551 ITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMW 610
Query: 1781 GLQKFKMNIASTI 1793
+ + K+++ +
Sbjct: 611 NMVQQKLDVLGQV 623
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 63.5 bits (153), Expect = 3e-09
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 1661 RVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXX 1720
+VLIF + +LD ++ ++ K+ L S+ R+DG S R + F D +I
Sbjct: 492 KVLIFAHHQIVLDTIQVEVNKRKLGSI---RIDGKTPSHRRTALCDSFQTDDNIRVAVLS 548
Query: 1721 XXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIM 1780
A V+F E +NP +QA DRAHR+GQK V V +I K T ++ +
Sbjct: 549 ITAAGVGITLTAASVVVFAEIHFNPGYLVQAEDRAHRVGQKDSVFVQYLIAKKTADDVMW 608
Query: 1781 GLQKFKMNIASTI 1793
+ + K+++ +
Sbjct: 609 NMVQQKLDVLGQV 621
>Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 619
Score = 63.2 bits (152), Expect = 4e-09
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 1286 TLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRSEDYKKTQSEKT 1345
+L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q I +A YL E
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA---YLYQEG--------- 543
Query: 1346 RXXXXXXXXXXXXTGHWEQEFQQYSPTLNVLVYAGG----PSVRYPLQGQVPTADIVVTS 1401
+W +E + PTL VL Y G +R+ + + +++VT
Sbjct: 544 NNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTD 603
Query: 1402 YDV 1404
V
Sbjct: 604 ITV 606
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 62.0 bits (149), Expect = 9e-09
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 1656 VISQHRVLIFCQLKDMLDMVENDL--LKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPS 1713
V Q + +IF + M+D + + L LK H ++R+DG S R V F + S
Sbjct: 532 VKEQKKFIIFAHHRVMMDAISDFLSGLKVH-----YIRIDGQTRSDHRSDSVDTFQKKSS 586
Query: 1714 IDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKG 1773
A+ ++F E DWNP QA RAHR+GQ K V +I
Sbjct: 587 CKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHN 646
Query: 1774 TLEEKIMGLQKFKMNIASTI 1793
T ++ I + K K + S +
Sbjct: 647 TADDIIWNMLKNKQEVLSKV 666
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 58.2 bits (139), Expect = 1e-07
Identities = 50/175 (28%), Positives = 74/175 (41%), Gaps = 26/175 (14%)
Query: 1659 QHRVLIFCQLKDMLDMVENDLLKKHLPSVTFMRLDGSVDS-----------RDRQKVVRK 1707
Q +VL+F D+LD++E+ S+T +R+ G S ++ QK
Sbjct: 1433 QTKVLVFSSWNDVLDVLEHAFAAN---SITCIRMKGGRKSQTAISKFKGSEKETQKTNSH 1489
Query: 1708 FNEDPSIDCXXXXXXXXXXXXXXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVY 1767
E+ SI A VI VE NP + QA+ R HR+GQ+K V+
Sbjct: 1490 QKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVH 1549
Query: 1768 RIITKGTLEEKIMGLQKFKMNIASTIVNQQNAGLGSMNT----HQLLDLFDADNI 1818
R + GT+EE I L + K N + S NT Q L L D +++
Sbjct: 1550 RFLVSGTVEESIYKLNRNK--------NTNLSSFSSRNTKNQDQQFLTLKDLESL 1596
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 53.5 bits (127), Expect = 3e-06
Identities = 32/116 (27%), Positives = 54/116 (45%), Gaps = 6/116 (5%)
Query: 1669 KDMLDMVENDLLKKHLPSVTFMRLDGSVDSRDRQKVVRKFNEDPSIDCXXXXXXXXXXXX 1728
+D+LD++ L ++ R+ + Q+ + F DP I+
Sbjct: 1548 QDVLDIISKALTDNNMEFAQISRV------KTFQENLSAFKRDPQINILLLPLHTGSNGL 1601
Query: 1729 XXXXADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRIITKGTLEEKIMGLQK 1784
A V+ VE NP ++LQA+ R HR+GQ K V+R + K T+EE++ + K
Sbjct: 1602 TIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLK 1657
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,738,608
Number of Sequences: 60738
Number of extensions: 4108420
Number of successful extensions: 15011
Number of sequences better than 1.0e-05: 150
Number of HSP's better than 0.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13927
Number of HSP's gapped (non-prelim): 472
length of query: 1873
length of database: 30,389,216
effective HSP length: 121
effective length of query: 1752
effective length of database: 23,039,918
effective search space: 40365936336
effective search space used: 40365936336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)