ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6239 good J KOG1646 Translation, ribosomal structure and biogenesis 40S ribosomal protein S6
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6239 Similar to YPL090c SP|P02365 RPS10B ribosomal
protein S6.e {P2.61.f2.1} [INTRON]
(234 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL090c [J] KOG1646 40S ribosomal protein S6 329 2e-90
YBR181c [J] KOG1646 40S ribosomal protein S6 329 2e-90
SPAPB1E7.12 [J] KOG1646 40S ribosomal protein S6 273 2e-73
SPAC13G6.07c [J] KOG1646 40S ribosomal protein S6 272 3e-73
Hs17158044 [J] KOG1646 40S ribosomal protein S6 246 3e-65
At4g31700 [J] KOG1646 40S ribosomal protein S6 219 2e-57
CE24592 [J] KOG1646 40S ribosomal protein S6 219 3e-57
Hs18579097 [J] KOG1646 40S ribosomal protein S6 214 6e-56
At5g10360 [J] KOG1646 40S ribosomal protein S6 213 1e-55
7290846 [J] KOG1646 40S ribosomal protein S6 202 2e-52
Hs17458725 [J] KOG1646 40S ribosomal protein S6 151 9e-37
Hs17448285_2 [J] KOG1646 40S ribosomal protein S6 130 2e-30
ECU05g0670 [J] KOG1646 40S ribosomal protein S6 124 9e-29
Hs22045553 [J] KOG1646 40S ribosomal protein S6 110 1e-24
Hs20533870 [J] KOG1646 40S ribosomal protein S6 65 6e-11
Hs20477770 [J] KOG1646 40S ribosomal protein S6 60 2e-09
7290845 [J] KOG1646 40S ribosomal protein S6 55 8e-08
Hs20533412_2 [J] KOG1646 40S ribosomal protein S6 39 0.006
Hs22058488 [J] KOG1646 40S ribosomal protein S6 38 0.011
Hs22058926_1 [J] KOG1646 40S ribosomal protein S6 31 1.3
Hs22061530 [J] KOG1646 40S ribosomal protein S6 30 2.2
Hs17475469 [J] KOG1646 40S ribosomal protein S6 30 2.2
At4g21070_2 [LK] KOG4362 Transcriptional regulator BRCA1 30 3.8
Hs18780273 [W] KOG3544 Collagens (type IV and type XIII) and rel... 29 6.4
CE23982 [S] KOG4556 Predicted membrane protein 28 8.4
>YPL090c [J] KOG1646 40S ribosomal protein S6
Length = 236
Score = 329 bits (844), Expect = 2e-90
Identities = 165/234 (70%), Positives = 182/234 (77%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+NISYP+NG+QK EIDDEHR+RVF+DKRIGQEVDGE+VGDEFKGYVFKI+GGNDKQGFP
Sbjct: 3 LNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
MKQGVLLPTR+KLLL K SCYRPRR+GERKRKSVRGAIVGPDLAVLAL+I KKGEQE+E
Sbjct: 63 MKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELE 122
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTKGDKSYTKAPKIQRLVTPX 180
G+T+ TVPKRLGPKRANNIRKFFGL+KEDDVRD+VIRREVTKG+K+YTKAPKIQRLVTP
Sbjct: 123 GLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQ 182
Query: 181 XXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXKRLSXXXXXXXXXXXXXXSSLKA 234
N KRLS SSLKA
Sbjct: 183 RLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLKA 236
>YBR181c [J] KOG1646 40S ribosomal protein S6
Length = 236
Score = 329 bits (844), Expect = 2e-90
Identities = 165/234 (70%), Positives = 182/234 (77%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+NISYP+NG+QK EIDDEHR+RVF+DKRIGQEVDGE+VGDEFKGYVFKI+GGNDKQGFP
Sbjct: 3 LNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
MKQGVLLPTR+KLLL K SCYRPRR+GERKRKSVRGAIVGPDLAVLAL+I KKGEQE+E
Sbjct: 63 MKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELE 122
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTKGDKSYTKAPKIQRLVTPX 180
G+T+ TVPKRLGPKRANNIRKFFGL+KEDDVRD+VIRREVTKG+K+YTKAPKIQRLVTP
Sbjct: 123 GLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQ 182
Query: 181 XXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXKRLSXXXXXXXXXXXXXXSSLKA 234
N KRLS SSLKA
Sbjct: 183 RLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLKA 236
>SPAPB1E7.12 [J] KOG1646 40S ribosomal protein S6
Length = 239
Score = 273 bits (697), Expect = 2e-73
Identities = 137/182 (75%), Positives = 154/182 (84%), Gaps = 3/182 (1%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+NISYP NGTQK IEIDD+ R+RVF +KR+GQEV G+SVG EF GYVFKI GGNDKQGFP
Sbjct: 3 LNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
M QGVLLP RV+LLL GH CYRPRR+GERKRKSVRG IVG DLAVLAL I K+GEQ+I
Sbjct: 63 MFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIP 122
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVT---KGDKSYTKAPKIQRLV 177
G+T+ TVPKRLGPKRA+ IR+FF L+KEDDVR +VIRREV +G K YTKAPKIQRLV
Sbjct: 123 GLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRLV 182
Query: 178 TP 179
TP
Sbjct: 183 TP 184
>SPAC13G6.07c [J] KOG1646 40S ribosomal protein S6
Length = 239
Score = 272 bits (696), Expect = 3e-73
Identities = 137/182 (75%), Positives = 154/182 (84%), Gaps = 3/182 (1%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+NISYP NGTQK IEIDD+ R+RVF +KR+GQEV G+SVG EF GYVFKI GGNDKQGFP
Sbjct: 3 LNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
M QGVLLP RV+LLL GH CYRPRR+GERKRKSVRG IVG DLAVLAL I K+GEQ+I
Sbjct: 63 MFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIP 122
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVT---KGDKSYTKAPKIQRLV 177
G+T+ TVPKRLGPKRA+ IR+FF L+KEDDVR +VIRREV +G K YTKAPKIQRLV
Sbjct: 123 GLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRLV 182
Query: 178 TP 179
TP
Sbjct: 183 TP 184
>Hs17158044 [J] KOG1646 40S ribosomal protein S6
Length = 249
Score = 246 bits (627), Expect = 3e-65
Identities = 119/180 (66%), Positives = 148/180 (82%), Gaps = 1/180 (0%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+NIS+P G QK IE+DDE ++R FY+KR+ EV +++G+E+KGYV +I+GGNDKQGFP
Sbjct: 3 LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
MKQGVL RV+LLL+KGHSCYRPRR GERKRKSVRG IV +L+VL L+I KKGE++I
Sbjct: 63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIP 122
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTK-GDKSYTKAPKIQRLVTP 179
G+T+ TVP+RLGPKRA+ IRK F L+KEDDVR YV+R+ + K G K TKAPKIQRLVTP
Sbjct: 123 GLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTP 182
>At4g31700 [J] KOG1646 40S ribosomal protein S6
Length = 250
Score = 219 bits (559), Expect = 2e-57
Identities = 114/183 (62%), Positives = 138/183 (75%), Gaps = 5/183 (2%)
Query: 2 NISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPM 61
N++ P G QK +EIDD+ ++R FYDKRI QEV G+++G+EFKGYVFKI GG DKQGFPM
Sbjct: 4 NVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPM 63
Query: 62 KQGVLLPTRVKLLLAKGHSCYR--PRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEI 119
KQGVL P RV+LLL +G C+R RR GER+RKSVRG IV PDL+VL L+I KKGE ++
Sbjct: 64 KQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDL 123
Query: 120 EGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV--IRREVT-KGDKSYTKAPKIQRL 176
G+T+ P+ GPKRA+ IRK F L KEDDVR YV RR+ T K K +KAPKIQRL
Sbjct: 124 PGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRL 183
Query: 177 VTP 179
VTP
Sbjct: 184 VTP 186
>CE24592 [J] KOG1646 40S ribosomal protein S6
Length = 246
Score = 219 bits (558), Expect = 3e-57
Identities = 106/180 (58%), Positives = 139/180 (76%), Gaps = 1/180 (0%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+N +YP G QK E+D+E ++R+F++KR+ QEV +++GDE+KGYV +I GGNDKQGFP
Sbjct: 3 LNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
MKQG+L RV+LLL KG SCYR R+NGERKRKSVRG IV +++ L+L+I KKG+ EIE
Sbjct: 63 MKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIE 122
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTKGD-KSYTKAPKIQRLVTP 179
G+T+ +P++LGPKRA+ IRK F LTK DDV YVI + T D + T APKIQRL+TP
Sbjct: 123 GLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTIAPKIQRLITP 182
>Hs18579097 [J] KOG1646 40S ribosomal protein S6
Length = 240
Score = 214 bits (546), Expect = 6e-56
Identities = 109/183 (59%), Positives = 140/183 (75%), Gaps = 4/183 (2%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFP 60
+NIS+P+ G QK IE+DDE ++R FY+K + EV +++G+E+KGYV +I+GGN+KQGFP
Sbjct: 3 LNISFPVTGCQKLIEVDDECKLRTFYEKLMATEVAADTLGEEWKGYVVRISGGNNKQGFP 62
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKG---EQ 117
MKQGVL RV LLL+KGHSCYRPRR GERKRKSVRG IV +L++L LII KK ++
Sbjct: 63 MKQGVLTHGRVHLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSILNLIIVKKKKKVKK 122
Query: 118 EIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTKGDKS-YTKAPKIQRL 176
+I G+T+ VP RLGPK+A+ I K L++EDDVR YV+R+ KG K TKAPKIQ L
Sbjct: 123 DIPGLTDTMVPCRLGPKKASRICKLSNLSEEDDVRQYVVRKPSNKGGKKPRTKAPKIQHL 182
Query: 177 VTP 179
VTP
Sbjct: 183 VTP 185
>At5g10360 [J] KOG1646 40S ribosomal protein S6
Length = 249
Score = 213 bits (543), Expect = 1e-55
Identities = 111/183 (60%), Positives = 136/183 (73%), Gaps = 5/183 (2%)
Query: 2 NISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPM 61
N++ P G QK +EIDD+ ++R F+DKR+ QEV G+++G+EFKGYVFKI GG DKQGFPM
Sbjct: 4 NVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPM 63
Query: 62 KQGVLLPTRVKLLLAKGHSCYR--PRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEI 119
KQGVL P RV+LLL +G C+R RR GER+RKSVRG IV PDL+VL L+I KKG ++
Sbjct: 64 KQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDL 123
Query: 120 EGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV--IRREVT-KGDKSYTKAPKIQRL 176
G+T+ P+ GPKRA+ IRK F L KEDDVR YV RR T K K +KAPKIQRL
Sbjct: 124 PGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRL 183
Query: 177 VTP 179
VTP
Sbjct: 184 VTP 186
>7290846 [J] KOG1646 40S ribosomal protein S6
Length = 217
Score = 202 bits (515), Expect = 2e-52
Identities = 98/152 (64%), Positives = 125/152 (81%), Gaps = 2/152 (1%)
Query: 30 IGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLLAKGHSCYRPRRNGE 89
+GQ V+ + +GDE+KGY +IAGGNDKQGFPMKQGVL RV+LLL KGHSCYRPRR GE
Sbjct: 1 MGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCYRPRRTGE 60
Query: 90 RKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKED 149
RKRKSVRG IV +++VLAL++ KKGE++I G+T+ T+P+RLGPKRA+ IRK + L+KED
Sbjct: 61 RKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKED 120
Query: 150 DVRDYVIRREVTKGD--KSYTKAPKIQRLVTP 179
DVR +V+RR + D K+ +KAPKIQRL+TP
Sbjct: 121 DVRRFVVRRPLPAKDNKKATSKAPKIQRLITP 152
>Hs17458725 [J] KOG1646 40S ribosomal protein S6
Length = 248
Score = 151 bits (381), Expect = 9e-37
Identities = 81/170 (47%), Positives = 110/170 (64%), Gaps = 17/170 (10%)
Query: 11 QKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTR 70
QK IE+D+EH++ FY+K + EV +++G E+KGYV GVL
Sbjct: 12 QKLIEVDNEHKLHTFYEKCMATEVAADALGKEWKGYV----------------GVLTHGH 55
Query: 71 VKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKR 130
V LLL K H+CYRPRR G+RK+KS RG IV +L++L L+I KKGE++I G+T+ VP
Sbjct: 56 VHLLLNKRHACYRPRRTGKRKQKSARGCIVDANLSILNLVIVKKGEKDIPGLTDTMVPCH 115
Query: 131 LGPKRANNIRKFFGLTKEDDVRDYVIRREVTK-GDKSYTKAPKIQRLVTP 179
LGPKRA+ I K F L+++DDV V+R+ + K G K TKAP + LVTP
Sbjct: 116 LGPKRASRICKLFSLSEDDDVHQCVVRKALNKEGKKPRTKAPTTKYLVTP 165
>Hs17448285_2 [J] KOG1646 40S ribosomal protein S6
Length = 155
Score = 130 bits (326), Expect = 2e-30
Identities = 72/172 (41%), Positives = 99/172 (56%), Gaps = 40/172 (23%)
Query: 9 GTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLP 68
G QK IE+DD+ ++ FY+K + EV +++ +E+KGYV I+GGNDKQ FPMK+GVL+
Sbjct: 3 GCQKLIEVDDKRKLCTFYEKHMATEVAADALVEEWKGYVVLISGGNDKQWFPMKRGVLIH 62
Query: 69 TRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVP 128
RV+LL+ ++ I G+T+ T+P
Sbjct: 63 GRVRLLMR---------------------------------------DKNIPGLTDTTMP 83
Query: 129 KRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTK-GDKSYTKAPKIQRLVTP 179
LGPKRA+ I K F L+KEDDV YV+R+ + K G K TKAPKIQRL+TP
Sbjct: 84 HHLGPKRASRIHKLFNLSKEDDVHQYVVRKPLNKEGKKPRTKAPKIQRLITP 135
>ECU05g0670 [J] KOG1646 40S ribosomal protein S6
Length = 203
Score = 124 bits (312), Expect = 9e-29
Identities = 72/162 (44%), Positives = 104/162 (63%), Gaps = 5/162 (3%)
Query: 15 EIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLL 74
EI+ + VR+ YDK+IG + DG +G+EF+G + +I GG+D QGFPM G L RV+ L
Sbjct: 3 EIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPL 61
Query: 75 LAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPK 134
L+KG + YR RR G R+RKSVRG+IV ++ VL LII + GE+EI+G+TN P+
Sbjct: 62 LSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPR 121
Query: 135 RANNIRKFFGLTKED-DVRDYVIRREVTKGD-KSYTKAPKIQ 174
+ +RK FG+ E+ +V Y+ R + K + K PKI+
Sbjct: 122 KEKKLRKMFGVPDEEKNVVGYI--RNILKSECDDPKKIPKIR 161
>Hs22045553 [J] KOG1646 40S ribosomal protein S6
Length = 90
Score = 110 bits (276), Expect = 1e-24
Identities = 55/88 (62%), Positives = 66/88 (74%)
Query: 61 MKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIE 120
MKQGVL V LLL+KGHSCYRPRR GERK KSV G IV +L++L L+I KKGE++I
Sbjct: 1 MKQGVLTHGHVHLLLSKGHSCYRPRRTGERKGKSVHGCIVVANLSILNLVIVKKGEKDIP 60
Query: 121 GITNDTVPKRLGPKRANNIRKFFGLTKE 148
G+T+ VP LGPKRA+ I K F L+KE
Sbjct: 61 GLTDTMVPHHLGPKRASRIHKLFNLSKE 88
>Hs20533870 [J] KOG1646 40S ribosomal protein S6
Length = 177
Score = 65.5 bits (158), Expect = 6e-11
Identities = 27/59 (45%), Positives = 44/59 (73%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESVGDEFKGYVFKIAGGNDKQGF 59
+N S+ G QK I+++DE ++R FY+K + E+ ++G+E+KGYV +I+GGN+KQGF
Sbjct: 3 LNSSFLAIGCQKLIKVEDERKLRTFYEKHMATEIAAYALGEEWKGYVVRISGGNNKQGF 61
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/34 (61%), Positives = 25/34 (72%), Gaps = 1/34 (2%)
Query: 147 KEDDVRDYVIRREVTK-GDKSYTKAPKIQRLVTP 179
+EDDV YV+R+ + K G K TKAPKIQ LVTP
Sbjct: 70 QEDDVCQYVVRKPLNKEGKKPRTKAPKIQHLVTP 103
>Hs20477770 [J] KOG1646 40S ribosomal protein S6
Length = 237
Score = 60.5 bits (145), Expect = 2e-09
Identities = 34/65 (52%), Positives = 43/65 (65%), Gaps = 2/65 (3%)
Query: 116 EQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTK-GDKSYTKAPKIQ 174
E++I G+T TVP LGPKRA+ I K F K DDV ++V+R+ K G K T+A KIQ
Sbjct: 140 EKDIPGLTGTTVPCCLGPKRASRIHKLFNFPK-DDVCEHVVRKPFNKEGKKPRTEAQKIQ 198
Query: 175 RLVTP 179
RL TP
Sbjct: 199 RLTTP 203
>7290845 [J] KOG1646 40S ribosomal protein S6
Length = 135
Score = 55.1 bits (131), Expect = 8e-08
Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 74 LLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGP 133
LL K HSC+ PR N RK K+VR V +++ L L++ KK P RLGP
Sbjct: 10 LLKKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PCRLGP 59
Query: 134 KRANNIRKFFGLTKEDD 150
R++NI K + L +EDD
Sbjct: 60 VRSSNISKIYYLCEEDD 76
>Hs20533412_2 [J] KOG1646 40S ribosomal protein S6
Length = 187
Score = 38.9 bits (89), Expect = 0.006
Identities = 18/34 (52%), Positives = 24/34 (69%)
Query: 146 TKEDDVRDYVIRREVTKGDKSYTKAPKIQRLVTP 179
+KED V V+++ + +G K TKAPKIQ LVTP
Sbjct: 3 SKEDSVHQSVVKKALKEGKKPGTKAPKIQLLVTP 36
>Hs22058488 [J] KOG1646 40S ribosomal protein S6
Length = 292
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 127 VPKRLGPKRANNIRKFFGLTKEDDVR-DYVIRREVTKGDKSYT 168
VP+RLGPKRA+ I KF L+K+D + ++++ TK +K T
Sbjct: 2 VPRRLGPKRASRIHKFLNLSKDDVCQWRIALKKQGTKKNKEET 44
>Hs22058926_1 [J] KOG1646 40S ribosomal protein S6
Length = 53
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (59%)
Query: 5 YPINGTQKCIEIDDEHRVRVFYDKRIGQEVDGESV 39
+P QK IE+DDE ++R Y+ + EV +++
Sbjct: 6 FPAASCQKLIEVDDERKLRSLYEMPVATEVAADAL 40
>Hs22061530 [J] KOG1646 40S ribosomal protein S6
Length = 90
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 145 LTKEDDV-RDYVIRREVTKGDKSY-TKAPKIQRLVT 178
L+KED+ YV R+ + K K TKAPKIQ LVT
Sbjct: 38 LSKEDNAPHPYVARKPLNKESKILRTKAPKIQHLVT 73
>Hs17475469 [J] KOG1646 40S ribosomal protein S6
Length = 311
Score = 30.4 bits (67), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 1 MNISYPINGTQKCIEIDDEHRVRVFYDKRI 30
M + +P G Q+ IE+DDEH + ++K I
Sbjct: 266 MKLIFPATGCQELIEVDDEHELWTNFEKCI 295
>At4g21070_2 [LK] KOG4362 Transcriptional regulator BRCA1
Length = 948
Score = 29.6 bits (65), Expect = 3.8
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 4/61 (6%)
Query: 85 RRNGERKRKSVRGA----IVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIR 140
++ +RKR S++ + I GP+ L I KG+Q+ +DT P++ P +++
Sbjct: 378 KQGTKRKRSSIKSSPAHPIAGPNELSLGTEIVGKGDQDQAHGPSDTHPEKRSPTEKPSLK 437
Query: 141 K 141
K
Sbjct: 438 K 438
>Hs18780273 [W] KOG3544 Collagens (type IV and type XIII) and related proteins
Length = 957
Score = 28.9 bits (63), Expect = 6.4
Identities = 23/78 (29%), Positives = 32/78 (40%), Gaps = 24/78 (30%)
Query: 52 GGNDKQGFPMKQGVLLPTRVKLLLAKGHSCYRPRRNGERKRKSVRGAIVGPDLAVLALII 111
G N +QG P +QG+ +GH + R GE+ VRGA I
Sbjct: 713 GENGRQGIPGQQGI-----------QGHHGAKGER-GEKGEPGVRGA------------I 748
Query: 112 TKKGEQEIEGITNDTVPK 129
KGE ++G+ PK
Sbjct: 749 GSKGESGVDGLMGPAGPK 766
>CE23982 [S] KOG4556 Predicted membrane protein
Length = 475
Score = 28.5 bits (62), Expect = 8.4
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 86 RNGERKRKSVRGAIVGPDLAVLALIITKKGEQEIEGITNDTVPKRLGPKRANNIRK 141
RN ++K+K+ R + PD A + + + E +E + + K++ P R ++ +
Sbjct: 225 RNSKKKKKNPRPEMPAPDCAPCSSNRSSEEESNLEDVYTQPIKKKIMPLRRPDLEE 280
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.139 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,372,508
Number of Sequences: 60738
Number of extensions: 479387
Number of successful extensions: 893
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 27
length of query: 234
length of database: 30,389,216
effective HSP length: 103
effective length of query: 131
effective length of database: 24,133,202
effective search space: 3161449462
effective search space used: 3161449462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)