ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6302 good J KOG2623 Translation, ribosomal structure and biogenesis Tyrosyl-tRNA synthetase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6302 2161984 2160626 -453
(453 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPL097w [J] KOG2623 Tyrosyl-tRNA synthetase 514 e-146
7291852 [J] KOG2623 Tyrosyl-tRNA synthetase 270 4e-72
SPCC576.06c [J] KOG2623 Tyrosyl-tRNA synthetase 263 3e-70
At3g02660 [J] KOG2623 Tyrosyl-tRNA synthetase 244 3e-64
Hs7705710 [J] KOG2623 Tyrosyl-tRNA synthetase 242 1e-63
CE29515 [J] KOG2623 Tyrosyl-tRNA synthetase 148 1e-35
>YPL097w [J] KOG2623 Tyrosyl-tRNA synthetase
Length = 492
Score = 514 bits (1325), Expect = e-146
Identities = 257/438 (58%), Positives = 329/438 (74%), Gaps = 4/438 (0%)
Query: 16 DVLQVLRERGLVQQVSQPEKLLSEKLSNGDKIKLYCGADPTAKSXXXXXXXXXXXXXNFY 75
++L L++RGLV QVSQPE L KL+ DKIKLYCG DPTA+S +FY
Sbjct: 55 NILDELKQRGLVSQVSQPESFLRTKLNGNDKIKLYCGVDPTAQSLHLGNLVPLMVLLHFY 114
Query: 76 VRGHDVVSLIGGATGKVGDPSGRKTERDVIAEAKRQGNIERIVEQYKTFFTNGLKYYESR 135
V+GHD+V++IGGATGKVGDPSGRKTERDV+ RQ N+ I +Q + FF NGL+YY +R
Sbjct: 115 VKGHDIVTVIGGATGKVGDPSGRKTERDVMENDIRQSNVASISQQLQRFFKNGLEYYRNR 174
Query: 136 IK-ERDAP-GKVTYLNNISWWQDVKMLDFLATYGKHIRIQNMLSRDSVSSRLQSQDGIGF 193
D P GK T NN +WW+D+KMLDFLA +G+HIR+Q+ML+RDS+SSRLQ+++G+GF
Sbjct: 175 CALTEDVPSGKYTPRNNFNWWKDIKMLDFLADFGRHIRVQSMLARDSISSRLQTKNGLGF 234
Query: 194 NEFTYQILQAYDFYHLYSNEQVSIQVGGNDQWGNITAGIDLINRISPQHVKTRPAFGLTV 253
NEFTYQ+LQAYDFYHLY E V+IQVGGNDQWGNITAGIDLINRI P K P FG+TV
Sbjct: 235 NEFTYQVLQAYDFYHLYKEENVTIQVGGNDQWGNITAGIDLINRIQPIKNKGLP-FGITV 293
Query: 254 PLLTTSTGEKFGKSAGNAVFIDPEINTSYDMYQFFVNTTDADVAKQLKIFTLLPLELIED 313
PLLTT+TGEKFGKSAGNAVFIDP INT+YD+YQFF NT DADV K LKIFT L I+
Sbjct: 294 PLLTTATGEKFGKSAGNAVFIDPSINTAYDVYQFFYNTLDADVPKFLKIFTFLNSSEIKK 353
Query: 314 IMAQHALSPNERYAQKRLAKEVVDLIHGIGKGDDAEFVSRILFGGSGFENVKAAELIRVF 373
I+ H SP+ RY Q LAKEV D+++G+G G D+E +S I+FG + AA+L+ +
Sbjct: 354 IVETHIKSPSLRYGQTLLAKEVTDMLYGVGSGSDSEALSNIIFGRYD-GTLSAAKLVDLC 412
Query: 374 DENRILNKIPINTPLSDIVCQLIDCSKTESRRRIKQGSIYLGPNKNKVVDDTTNFSPFLI 433
+ RIL L ++C+L++CS +E+RR++ QGS+YL +K+KV ++ +N +PFLI
Sbjct: 413 KKARILQYADREIDLIKLICKLVNCSVSEARRKLSQGSVYLHHSKSKVNENISNLAPFLI 472
Query: 434 DERVLLLRVGKQKCYVIE 451
D+RVL+LR+GKQKC++IE
Sbjct: 473 DDRVLILRIGKQKCFIIE 490
>7291852 [J] KOG2623 Tyrosyl-tRNA synthetase
Length = 464
Score = 270 bits (689), Expect = 4e-72
Identities = 148/406 (36%), Positives = 232/406 (56%), Gaps = 8/406 (1%)
Query: 49 LYCGADPTAKSXXXXXXXXXXXXXNFYVRGHDVVSLIGGATGKVGDPSGRKTERDVIAEA 108
+Y G DPTA S + GH ++L+GGATG +GDPSGRKTER+ + E
Sbjct: 60 IYAGFDPTADSLHVGNLLVIMGLIHCQRAGHRPIALVGGATGLIGDPSGRKTERNQLGET 119
Query: 109 KRQGNIERIVEQYKTFFTNGLKYYESRIKERDAPGKVTYLNNISWWQDVKMLDFLATYGK 168
+ N++ I +Q + F N K++ + +NN W+ D++++DF+A G+
Sbjct: 120 VIETNLKAIEQQLRRVFENHENCLWDSKKQKLPLAPLIIVNNADWYADLQLIDFVANMGR 179
Query: 169 HIRIQNMLSRDSVSSRLQSQDGIGFNEFTYQILQAYDFYHLYSNEQVSIQVGGNDQWGNI 228
H R+ +MLSR SV SRL+S+DG+ F EFTYQI QAYD+ HL Q+GG+DQ GN+
Sbjct: 180 HFRMGSMLSRSSVQSRLESEDGMSFTEFTYQIFQAYDWLHLLRRHNCCFQMGGSDQTGNL 239
Query: 229 TAGIDLINRISPQHVKTRPAFGLTVPLLTTSTGEKFGKSAGNAVFIDPEINTSYDMYQFF 288
G +LI+R+ + R FGLT+PL+TT G+KFGKSAGNAV++D + + +YQFF
Sbjct: 240 MTGHELISRVE----RKREVFGLTLPLVTTEEGDKFGKSAGNAVWLDGNKTSPFALYQFF 295
Query: 289 VNTTDADVAKQLKIFTLLPLELIEDIMAQHALSPNERYAQKRLAKEVVDLIHGIGKGDDA 348
+ D++V K LK+FT +PL +E +M +H P +R AQ LA++V L+HG A
Sbjct: 296 LRMPDSEVEKLLKLFTFIPLPQVEQLMREHTKEPEKRKAQTLLAEDVTLLVHGESGLKQA 355
Query: 349 EFVSRILFGGS--GFENVKAAELIRVFDENRILNKI--PINTPLSDIVCQLIDCSKTESR 404
E V+ L+ G+ G + +E+ + F ++N + P + L + ++T++
Sbjct: 356 ERVTNALYKGNVEGLAELNLSEIQQTFQGATMVNLLTEPGMSILELAMKAKCFPTETDAV 415
Query: 405 RRIKQGSIYLGPNKNKVVDDTTNFSPFLIDERVLLLRVGKQKCYVI 450
R I G Y+ + + + + ++ + LLRVGK+ Y++
Sbjct: 416 RIINAGGFYVNQKRVQNIAEVLTTGVHILRNGISLLRVGKRNFYIV 461
>SPCC576.06c [J] KOG2623 Tyrosyl-tRNA synthetase
Length = 445
Score = 263 bits (673), Expect = 3e-70
Identities = 153/419 (36%), Positives = 234/419 (55%), Gaps = 34/419 (8%)
Query: 49 LYCGADPTAKSXXXXXXXXXXXXXNFYVRGHDVVSLIGGATGKVGDPSGRKTERDVIAEA 108
+Y GADPTA S +F++ G V ++IG AT ++GDPSGR T R +AE
Sbjct: 32 VYLGADPTAASLHVGNLVALMPLVHFFLNGFPVFTVIGDATAQLGDPSGRSTSRKQMAET 91
Query: 109 KRQGNIERIVEQYKTFFTNGLKYYES---RIKERDAPGKVTYLNNISWWQDVKMLDFLAT 165
R N I Q K ++ L Y + + + + + + N SW++++K+L FL++
Sbjct: 92 TRTANSNSIHNQLKDLSSSILSYAQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLKFLSS 151
Query: 166 YGKHIRIQNMLSRDSVSSRLQSQDGIGFNEFTYQILQAYDFYHLYSNEQVSIQVGGNDQW 225
G H+R+ ML+RDSV++RLQS G+ F E TYQ+LQAYD+ +LY N V++Q+GG+DQW
Sbjct: 152 VGPHVRVSQMLARDSVTTRLQSPSGLSFAELTYQLLQAYDYSYLYENHSVNLQIGGSDQW 211
Query: 226 GNITAGIDLINRISPQHVKTRPAFGLTVPLLTTSTGEKFGKSAGNAVFIDPEINTSYDMY 285
GNITAG DL+ R P + LT PLLT+S+G+K GKSAGNA+++DP++ SY +Y
Sbjct: 212 GNITAGTDLVRRTHP----NANVYALTTPLLTSSSGQKLGKSAGNAIWLDPKLTDSYSLY 267
Query: 286 QFFVNTTDADVAKQLKIFTLLPLELIEDIMAQHALSPNERYAQKRLAKEVVDLIHGIGKG 345
Q+F++ D K L + TLLPLE +E I A+H P++R K LA VV ++HG
Sbjct: 268 QYFISAPDDLACKCLDMLTLLPLEQLEQIKAEHEKDPSQRIVHKYLASNVVRMVHGKKAL 327
Query: 346 DDAEFVSRILFG---------------GSGFENVKAAELIRVFDENRILNKIPI---NTP 387
+ A+ +++L G G F ++ E+ +F + + I + P
Sbjct: 328 ELAQIQTKLLHGAHQAPFGFYSEAPQQGDSFPSL--PEIRALFKDCKFYRTIDSSIKDQP 385
Query: 388 LSDIVCQL-IDCSKTESRRRIKQGSIYLGPNKNKVVDDTTNFSPFLIDERVLLLRVGKQ 445
S ++ L I S+ E+ I G++ LG ++D F D + +LR GK+
Sbjct: 386 FSRLLRTLQIYTSRKEATEHILSGAVSLG--HKPILDSNYKFP----DNSLFVLRAGKR 438
>At3g02660 [J] KOG2623 Tyrosyl-tRNA synthetase
Length = 511
Score = 244 bits (622), Expect = 3e-64
Identities = 157/448 (35%), Positives = 234/448 (52%), Gaps = 36/448 (8%)
Query: 16 DVLQVLRERGLVQQVSQPEKLLSEKLSNGDKIKLYCGADPTAKSXXXXXXXXXXXXXNFY 75
+V+ +L ERGL++ ++ + +++YCG DPTA+S F
Sbjct: 84 NVVDILEERGLLESITSENLRSACSDPKVAPLRVYCGFDPTAESLHLGNLLGIIVLSWFQ 143
Query: 76 VRGHDVVSLIGGATGKVGDPSGRKTERDVIAEAKRQGNIERIVEQYKTFFTNGLKYYESR 135
GH V LIGGATG+VGDPSG+ ER + + NI I K
Sbjct: 144 RCGHQAVGLIGGATGRVGDPSGKSLERPELDADTLEKNIAGIT-----------KIIIKI 192
Query: 136 IKERDAPG-KVTYLNNISWWQDVKMLDFLATYGKHIRIQNMLSRDSVSSRLQSQDGIGFN 194
+ +PG NN WW+D+ MLDFL G+ R+ M++++SV RL+S+ G+ +
Sbjct: 193 LGSNPSPGGSYVIFNNYDWWKDMTMLDFLNKVGRFARVGTMMAKESVKKRLESEQGMSYT 252
Query: 195 EFTYQILQAYDFYHLYSNEQVSIQVGGNDQWGNITAGIDLINRISPQHVKTRPAFGLTVP 254
EFTYQ+LQAYDF HL+ NE +++Q+GG+DQWGNITAG DLI +I A+GLT P
Sbjct: 253 EFTYQLLQAYDFLHLFKNEGINVQIGGSDQWGNITAGTDLIRKILQAE---EAAYGLTFP 309
Query: 255 LLTTSTGEKFGKSAGNAVFIDPEINTSYDMYQFFVNTTDADVAKQLKIFTLLPLE---LI 311
LL + G KFGKS A+++ P + + Y YQ+F + D DV + LK T L L+ ++
Sbjct: 310 LLLKNDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDVDVIRFLKTLTFLSLDEIKIL 369
Query: 312 EDIMAQHALSPNERYAQKRLAKEVVDLIHGIGKGDDAEFVSRILFGGSGFENVKAAELIR 371
ED M++ PN AQ +LA+EV +HG +A + L G+ E LI
Sbjct: 370 EDQMSKPGYVPNT--AQIKLAEEVTRFVHGEEGLKEAIKATEALRPGA--ETKLDWNLIE 425
Query: 372 VFDENRILNKIPINTPLSDIVCQL-----IDCSKTESRRRIKQGSIYLG----PNKNKVV 422
E+ +PI+ + L + SK+ +RR +KQG Y+ ++NK V
Sbjct: 426 RIAEDIPSCSLPIDRVSGLSIVDLSVSAGLFESKSAARRMLKQGGFYMNNERVDDENKRV 485
Query: 423 DDTTNFSPFLIDERVLLLRVGKQKCYVI 450
D+ +++ R L+L GK+ V+
Sbjct: 486 DEED-----IVEGRGLVLSAGKKNKVVV 508
>Hs7705710 [J] KOG2623 Tyrosyl-tRNA synthetase
Length = 476
Score = 242 bits (617), Expect = 1e-63
Identities = 141/418 (33%), Positives = 224/418 (52%), Gaps = 35/418 (8%)
Query: 49 LYCGADPTAKSXXXXXXXXXXXXXNFYVRGHDVVSLIGGATGKVGDPSGRKTERDVIAEA 108
+YCG DPTA S + GH+V++L+GGAT +GDPSGR ER+ +
Sbjct: 75 IYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATAALGDPSGRTKEREALETE 134
Query: 109 KRQGN-------IERIVEQYKTFFTNGLKYYESRIKERDAPGKVTYLNNISWWQDVKMLD 161
+ + N +E + ++ FT+G + G T L+N +W+Q ++D
Sbjct: 135 RVRANARALRLGLEALAANHQQLFTDGRSW-----------GSFTVLDNSAWYQKQHLVD 183
Query: 162 FLATYGKHIRIQNMLSRDSVSSRLQSQDGIGFNEFTYQILQAYDFYHLYSNEQVSIQVGG 221
FLA G H R+ +LSR SV RL+S +G+ EF YQ+LQAYDFY+L+ +Q+GG
Sbjct: 184 FLAAVGVHFRMGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGG 243
Query: 222 NDQWGNITAGIDLINRISPQHVKTRPAFGLTVPLLTTSTGEKFGKSAGNAVFIDPEINTS 281
+DQ GNI +G + IN+++ + V FG+TV L+T++TG K GKSAGNAV+++ + +
Sbjct: 244 SDQLGNIMSGYEFINKLTGEDV-----FGITVTLITSTTGAKLGKSAGNAVWLNRDKTSP 298
Query: 282 YDMYQFFVNTTDADVAKQLKIFTLLPLELIEDIMAQHALSPNERYAQKRLAKEVVDLIHG 341
+++YQFFV + V + LK+FT LPL I+ IM H P R QKRLA EV L+HG
Sbjct: 299 FELYQFFVRQPEDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHG 358
Query: 342 IGKGDDAEFVSRILFGGSGFENVKAAELIRVFDENRILNKIPINTPLSDIVCQLID-CSK 400
D A+ ++ L+ S + A E++ + + + P + D ++D C K
Sbjct: 359 REGLDSAKRCTQALYHSS----IDALEVMSDQELKELFKEAPFSEFFLDPGTSVLDTCRK 414
Query: 401 TES-------RRRIKQGSIYLGPNKNKVVDDTTNFSPFLIDERVLLLRVGKQKCYVIE 451
+ R I +G + + + + ++ + LL++GK+ Y+I+
Sbjct: 415 ANAIPDGPRGYRMITEGGVSINHQQVTNPESVLIVGQHILKNGLSLLKIGKRNFYIIK 472
>CE29515 [J] KOG2623 Tyrosyl-tRNA synthetase
Length = 447
Score = 148 bits (374), Expect = 1e-35
Identities = 115/403 (28%), Positives = 193/403 (47%), Gaps = 36/403 (8%)
Query: 29 QVSQPEKLLSEKLSNGDKIK--LYCGADPTAKSXXXXXXXXXXXXXNFYVRGHDVVSLIG 86
Q S P LLS+ + ++ +Y G DPTA+S G ++LIG
Sbjct: 37 QHSYPTDLLSKCSEDLRQLPPYVYAGFDPTAESLHIGNLLILVNLIRAQQFGIRPIALIG 96
Query: 87 GATGKVGDPSGRKTERDVIAEAKRQGNIERIVEQYKTFFTNGLKYYESRIKERDAPG--- 143
T +GDPSG+K+ER ++A N ++ +Q F N APG
Sbjct: 97 EFTASIGDPSGKKSERGLLAGDVIMHNSRKVTDQICKIFEN-------------APGSSE 143
Query: 144 KVTYLNNISWWQDVKMLDFLATYGKHIRIQNMLSRDSVSSRLQSQDGIGFNEFTYQILQA 203
K +NN W + + DFL K++++ ML +++ +RL+ G+ + EF+YQ +QA
Sbjct: 144 KPIIVNNNDWLGKISLRDFLREC-KNMQVGKMLRMNTIKNRLEV--GLSYTEFSYQTMQA 200
Query: 204 YDFYHLYSNEQVSIQVGGNDQWGNITAGIDLINRISPQHVKTRPAFGLTVPLLTTSTGEK 263
+D+Y L Q+GG DQ G++ G I ++ Q A G+ P+LT STG K
Sbjct: 201 FDWYTLSEKYGCRFQLGGYDQLGHLDFGAHYIKKMMNQAF----AAGVCFPILTDSTGAK 256
Query: 264 FGKS-AGNAVFIDPEINTSYDMYQFFVNTTDADVAKQLKIFTLLPLELIEDIMAQHALSP 322
GKS G A+++D + + YQFF D + L +F+L +E I D++ H +
Sbjct: 257 LGKSEGGGALWLDATKTSPFHFYQFFAQLHDDKAEELLLLFSLQDIEHIRDVLKNHRSNL 316
Query: 323 NERYAQKRLAKEVVDLIHGIGKGDDAEFVSRILFGG--SGFENVKAAELIRVFDENRILN 380
+ AQ+ LA E+ ++HG + A ++ +FG + + +E++++F L
Sbjct: 317 GQWIAQRELAAEITRIVHGKEGLEVAMRCTKAMFGAKKADLSGLSRSEVLQLFRTTIDLK 376
Query: 381 KIPINTPLSDIVCQLIDCSKTESRR---RIKQGSIYLGPNKNK 420
K + T + QL D S+ S + ++QG+ + K +
Sbjct: 377 KENVAT-----MGQLADASRLGSGKGHLLMQQGAFSVNGEKKR 414
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.139 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,188,077
Number of Sequences: 60738
Number of extensions: 1103277
Number of successful extensions: 2586
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2562
Number of HSP's gapped (non-prelim): 6
length of query: 453
length of database: 30,389,216
effective HSP length: 110
effective length of query: 343
effective length of database: 23,708,036
effective search space: 8131856348
effective search space used: 8131856348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)