ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6368 good YU KOG2834 Intracellular trafficking, secretion, and vesicular transport Nuclear pore complex, rNpl4 component (sc Npl4)
r_klactV6368 good YU KOG2834 Nuclear structure Nuclear pore complex, rNpl4 component (sc Npl4)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactV6368 2181790 2183577 596
(596 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR170c [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4) 743 0.0
SPBC1711.10c [YU] KOG2834 Nuclear pore complex rNpl4 component (... 408 e-113
CE28574 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4) 301 2e-81
CE11526 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4) 301 2e-81
CE28573 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4) 299 9e-81
CE28572 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4) 299 9e-81
Hs8923609 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc ... 291 3e-78
7301352 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4) 267 3e-71
ECU07g0770 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc... 185 2e-46
CE08654_1 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc ... 53 1e-06
>YBR170c [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 580
Score = 743 bits (1917), Expect = 0.0
Identities = 365/596 (61%), Positives = 446/596 (74%), Gaps = 18/596 (3%)
Query: 1 MLLRLRSKLGIHRVSCEGNDNFGSVIEKWANQLRLNVDPDSVSVSTQPGVS-KLMTEIAH 59
ML+R RSK G HRVSC+ ND FG+VIEK L N D D+ +V +PG ++E+A
Sbjct: 1 MLIRFRSKNGTHRVSCQENDLFGTVIEKLVGNLDPNADVDTFTVCEKPGQGIHAVSELAD 60
Query: 60 QGVESLGLRHGDMVTVEFKVLDTEEKNVSEKEMTNMXXXXXXXXXXXXXXHNKGSIRGKV 119
+ V LGL+HGDM+ +L+ +K +EK+ N+ H G +R +
Sbjct: 61 RTVMDLGLKHGDML-----ILNYSDKPANEKDGVNVEIGSVGIDSKGIRQHRYGPLR--I 113
Query: 120 KESALDIELEGETGLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAYL 179
KE A+D ELE E GLIPR +S LC+HG++GMCEYCSPLPPWDK Y +++ IKHISFH+YL
Sbjct: 114 KELAVDEELEKEDGLIPRQKSKLCKHGDRGMCEYCSPLPPWDKEYHEKNKIKHISFHSYL 173
Query: 180 KQLDEVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFRM 239
K+L+E NKK +GSSYI PLSEP++ IN C GHEPWP+GICSKCQPSAITLQQQ FRM
Sbjct: 174 KKLNENANKKENGSSYISPLSEPDFRINKRCHNGHEPWPRGICSKCQPSAITLQQQEFRM 233
Query: 240 VDHVEFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDEQ 299
VDHVEFQ+SE+IN+FI +WR TGMQRFGY+YG Y +YDN PLGIKAVVEAI+EPPQHDEQ
Sbjct: 234 VDHVEFQKSEIINEFIQAWRYTGMQRFGYMYGSYSKYDNTPLGIKAVVEAIYEPPQHDEQ 293
Query: 300 DGLTMDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSSL 359
DGLTMD++QV E+ D+ A+EMGL RIG+IFTDL+D G GDGSV+CKRHKDSFFLSSL
Sbjct: 294 DGLTMDVEQVKNEMLQIDRQAQEMGLSRIGLIFTDLSDAGAGDGSVFCKRHKDSFFLSSL 353
Query: 360 EVIMAAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEADL 419
EVIMAA+HQ RHPNVSK+SE G FSS+FVTC ISGNL EIDI++YQVS EAE LV AD+
Sbjct: 354 EVIMAARHQTRHPNVSKYSEQGFFSSKFVTCVISGNLEGEIDISSYQVSTEAEALVTADM 413
Query: 420 ISGSTHPSQAYINETNDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGFPKE 479
ISGST PS AYIN+T D+RYVPEIFY + NEY +TVK+NAKPAFPVDYLLV+LTHGFP
Sbjct: 414 ISGSTFPSMAYINDTTDERYVPEIFYMKSNEYGITVKENAKPAFPVDYLLVTLTHGFPN- 472
Query: 480 XXXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAKLSN 539
F + GFPW+NRQAMGQSQDY ELK+Y++ + D L K+SN
Sbjct: 473 ------TDTETNSKFVSSTGFPWSNRQAMGQSQDYQELKKYLFNVASSGDFNLLHEKISN 526
Query: 540 FHFLLYLHSIEVLNQQEWSLLIRTVTAPTLHEATEPLLNLINSPGWQTFVMILEQS 595
FH LLY++S+++L+ EW LLI + +E E LL L++S GWQT VMIL++S
Sbjct: 527 FHLLLYINSLQILSPDEWKLLIESAVK---NEWEESLLKLVSSAGWQTLVMILQES 579
>SPBC1711.10c [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 545
Score = 408 bits (1049), Expect = e-113
Identities = 223/558 (39%), Positives = 321/558 (56%), Gaps = 28/558 (5%)
Query: 1 MLLRLRSKLGIHRVSCEGNDNFGSVIEKWANQLRLN-VDPDSVSV-STQPGVSKLMTEIA 58
M+LR RSK G+ R + D + K + + N P++VS+ + + + +
Sbjct: 1 MILRFRSKRGMARAEFQPTDTLAMLSAKILSDILKNDYSPENVSLCQNESDQGVIFSNLN 60
Query: 59 HQGVESLGLRHGDMVTVEFKVLDTEEKNVSEKEMTNMXXXXXXXXXXXXXXHNKGSIRGK 118
Q ++ GL HG M+ + +++ + S E K S+
Sbjct: 61 DQTLQDAGLTHGQMLYLRLGTPNSDIAS-SNNEPALTVTGAPKQVSTPDVSEKKPSM--P 117
Query: 119 VKESALDIELEGETGLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAY 178
V + +D LE E GLI RS +SLCRHG KGMC+YCSPL P+D+ Y+ E+ IKH+SFHAY
Sbjct: 118 VIQDPIDDSLEKEDGLIRRSMTSLCRHGPKGMCDYCSPLEPYDESYRQENKIKHLSFHAY 177
Query: 179 LKQLDEVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFR 238
L++++ NK +S S+IPPL EP++ + C GH PWP GIC+KCQPS + L Q FR
Sbjct: 178 LRKINSNVNKYASSQSFIPPLEEPSFTVKEKCPSGHPPWPAGICTKCQPSTVMLNLQPFR 237
Query: 239 MVDHVEFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDE 298
++DH+EF +++ F++ WR +G QR GY YG++++Y+NVPLGIK V+EAI+EPPQ E
Sbjct: 238 VIDHIEFASPGIVDSFLNKWRQSGFQRIGYTYGHFEQYNNVPLGIKGVIEAIYEPPQVSE 297
Query: 299 QDGLTMD--MDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFL 356
DG+T++ D+ + E ++A GL RIG+IFTDLTD G G V CKRH DS+FL
Sbjct: 298 ADGVTLEEWADEALVE-----QVATACGLRRIGIIFTDLTDDGSNSGKVLCKRHSDSYFL 352
Query: 357 SSLEVIMAAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVE 416
SSLEV +A Q + N K+S +G F S+FVT ISGNLN EI++ +YQVS L +
Sbjct: 353 SSLEVYNSANFQTKFKNPCKWSRSGYFGSKFVTSVISGNLNGEIEVMSYQVSNIGTALYQ 412
Query: 417 ADLISGSTHPSQAYINETNDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGF 476
ADLI S P + + + + RYVP++ Y ++Y V +NAKPAFPV +LLV+LT GF
Sbjct: 413 ADLIQPSVDPDRMLVKKEDQTRYVPDVLYRYTDKYGKQVSENAKPAFPVSFLLVTLTDGF 472
Query: 477 PKEXXXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAK 536
P++ + T+ +S D T R + K N +A
Sbjct: 473 PEK--PDPLFSNNDTSIITTL------------ESTDETGRLRQLAKLFDHNAIA--NGS 516
Query: 537 LSNFHFLLYLHSIEVLNQ 554
LSNF LL + + +L +
Sbjct: 517 LSNFSVLLAIAKLSILGK 534
>CE28574 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 529
Score = 301 bits (771), Expect = 2e-81
Identities = 170/438 (38%), Positives = 252/438 (56%), Gaps = 19/438 (4%)
Query: 124 LDIELEGETGLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAYLKQLD 183
+D+ L + G I R + CRH + C C P+ P+D+ Y E IKH+SFHA++++L
Sbjct: 14 VDVFLSTQDGQIQRPKGPNCRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKL- 72
Query: 184 EVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFRMVDHV 243
+ G++ PL + NC H+P+PKGIC+KC+P +TL +Q FR VD++
Sbjct: 73 --LGSQGKGTTLKKPLENFRCSLKPNC-DAHKPFPKGICTKCKPQVVTLNRQKFRHVDNI 129
Query: 244 EFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDEQDGLT 303
+ + EL+NQF+D WR +G QR G+L G Y+ + VPLGIKA V AI+EPPQH +DG+
Sbjct: 130 QIENQELVNQFLDYWRLSGHQRVGFLIGQYQPHLEVPLGIKATVAAIYEPPQHCREDGIE 189
Query: 304 MDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSSLEVIM 363
D+ K + D L +GL+R+G IFTD +G+V+ RHKDSFFLS+ E I
Sbjct: 190 FLEDKNQKTI---DNLLEMLGLQRVGWIFTDCWTANSAEGTVHYTRHKDSFFLSAEECIT 246
Query: 364 AAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEADLISGS 423
AA Q +HPN++++S + S+FVT SG+ + ++ YQVS + +VEAD++ +
Sbjct: 247 AAMLQNQHPNITEYSMDRHYGSKFVTVVASGDESMHVNFHGYQVSNQCAAMVEADILCPT 306
Query: 424 TH-PSQAYINET--NDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGFPKEX 480
+ P AY+ ET +++ Y+ ++ ++ KNEY V +N +P PV+YLLV + G PKE
Sbjct: 307 LYTPELAYVRETPLSEEHYITDVQFSMKNEYGAEVMKNGRP-LPVEYLLVDVPAGMPKEP 365
Query: 481 XXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAKLSNF 540
A F NRQA+GQ Q L +Y + T L + +NF
Sbjct: 366 HYTFHVGTSNK---SKSAKFNVENRQAIGQLQGGANLIQYSSEFSTNQFLEQ----ATNF 418
Query: 541 HFLLYL-HSIEVLNQQEW 557
HFLLYL + +V EW
Sbjct: 419 HFLLYLVTNDQVQISDEW 436
>CE11526 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 527
Score = 301 bits (771), Expect = 2e-81
Identities = 170/438 (38%), Positives = 252/438 (56%), Gaps = 19/438 (4%)
Query: 124 LDIELEGETGLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAYLKQLD 183
+D+ L + G I R + CRH + C C P+ P+D+ Y E IKH+SFHA++++L
Sbjct: 14 VDVFLSTQDGQIQRPKGPNCRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKL- 72
Query: 184 EVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFRMVDHV 243
+ G++ PL + NC H+P+PKGIC+KC+P +TL +Q FR VD++
Sbjct: 73 --LGSQGKGTTLKKPLENFRCSLKPNC-DAHKPFPKGICTKCKPQVVTLNRQKFRHVDNI 129
Query: 244 EFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDEQDGLT 303
+ + EL+NQF+D WR +G QR G+L G Y+ + VPLGIKA V AI+EPPQH +DG+
Sbjct: 130 QIENQELVNQFLDYWRLSGHQRVGFLIGQYQPHLEVPLGIKATVAAIYEPPQHCREDGIE 189
Query: 304 MDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSSLEVIM 363
D+ K + D L +GL+R+G IFTD +G+V+ RHKDSFFLS+ E I
Sbjct: 190 FLEDKNQKTI---DNLLEMLGLQRVGWIFTDCWTANSAEGTVHYTRHKDSFFLSAEECIT 246
Query: 364 AAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEADLISGS 423
AA Q +HPN++++S + S+FVT SG+ + ++ YQVS + +VEAD++ +
Sbjct: 247 AAMLQNQHPNITEYSMDRHYGSKFVTVVASGDESMHVNFHGYQVSNQCAAMVEADILCPT 306
Query: 424 TH-PSQAYINET--NDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGFPKEX 480
+ P AY+ ET +++ Y+ ++ ++ KNEY V +N +P PV+YLLV + G PKE
Sbjct: 307 LYTPELAYVRETPLSEEHYITDVQFSMKNEYGAEVMKNGRP-LPVEYLLVDVPAGMPKEP 365
Query: 481 XXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAKLSNF 540
A F NRQA+GQ Q L +Y + T L + +NF
Sbjct: 366 HYTFHVGTSNK---SKSAKFNVENRQAIGQLQGGANLIQYSSEFSTNQFLEQ----ATNF 418
Query: 541 HFLLYL-HSIEVLNQQEW 557
HFLLYL + +V EW
Sbjct: 419 HFLLYLVTNDQVQISDEW 436
>CE28573 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 529
Score = 299 bits (765), Expect = 9e-81
Identities = 169/438 (38%), Positives = 251/438 (56%), Gaps = 19/438 (4%)
Query: 124 LDIELEGETGLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAYLKQLD 183
+D+ L + G I R + CRH + C C P+ P+D+ Y E IKH+SFHA++++L
Sbjct: 14 VDVFLSTQDGQIQRPKGPNCRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKL- 72
Query: 184 EVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFRMVDHV 243
+ G++ PL + NC H+P+PKGIC+KC+P +TL +Q FR VD++
Sbjct: 73 --LGSQGKGTTLKKPLENFRCSLKPNC-DAHKPFPKGICTKCKPQVVTLNRQKFRHVDNI 129
Query: 244 EFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDEQDGLT 303
+ + EL+NQF+D WR +G QR G+L G Y+ + VPLGIKA V AI+EPPQH +DG+
Sbjct: 130 QIENQELVNQFLDYWRLSGHQRVGFLIGQYQPHLEVPLGIKATVAAIYEPPQHCREDGIE 189
Query: 304 MDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSSLEVIM 363
D+ K + D L +GL+R+G IFTD +G+V+ RHKDSFFLS+ E I
Sbjct: 190 FLEDKNQKTI---DNLLEMLGLQRVGWIFTDCWTANSAEGTVHYTRHKDSFFLSAEECIT 246
Query: 364 AAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEADLISGS 423
AA Q +HPN++++S + S+FVT SG+ + ++ YQVS + +VEAD++ +
Sbjct: 247 AAMLQNQHPNITEYSMDRHYGSKFVTVVASGDESMHVNFHGYQVSNQCAAMVEADILCPT 306
Query: 424 TH-PSQAYINET--NDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGFPKEX 480
+ P AY+ ET +++ Y+ ++ ++ KNEY V +N +P PV+YLLV + G PKE
Sbjct: 307 LYTPELAYVRETPLSEEHYITDVQFSMKNEYGAEVMKNGRP-LPVEYLLVDVPAGMPKEP 365
Query: 481 XXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAKLSNF 540
A F NRQA+GQ Q L +Y + L + +NF
Sbjct: 366 HYTFHVGTSNK---SKSAKFNVENRQAIGQLQGGANLIQYSSEFSKNQFLEQ----ATNF 418
Query: 541 HFLLYL-HSIEVLNQQEW 557
HFLLYL + +V EW
Sbjct: 419 HFLLYLVTNDQVQISDEW 436
>CE28572 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 527
Score = 299 bits (765), Expect = 9e-81
Identities = 169/438 (38%), Positives = 251/438 (56%), Gaps = 19/438 (4%)
Query: 124 LDIELEGETGLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAYLKQLD 183
+D+ L + G I R + CRH + C C P+ P+D+ Y E IKH+SFHA++++L
Sbjct: 14 VDVFLSTQDGQIQRPKGPNCRHPVRQKCTNCLPVDPFDEEYLKEKDIKHMSFHAHVRKL- 72
Query: 184 EVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFRMVDHV 243
+ G++ PL + NC H+P+PKGIC+KC+P +TL +Q FR VD++
Sbjct: 73 --LGSQGKGTTLKKPLENFRCSLKPNC-DAHKPFPKGICTKCKPQVVTLNRQKFRHVDNI 129
Query: 244 EFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDEQDGLT 303
+ + EL+NQF+D WR +G QR G+L G Y+ + VPLGIKA V AI+EPPQH +DG+
Sbjct: 130 QIENQELVNQFLDYWRLSGHQRVGFLIGQYQPHLEVPLGIKATVAAIYEPPQHCREDGIE 189
Query: 304 MDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSSLEVIM 363
D+ K + D L +GL+R+G IFTD +G+V+ RHKDSFFLS+ E I
Sbjct: 190 FLEDKNQKTI---DNLLEMLGLQRVGWIFTDCWTANSAEGTVHYTRHKDSFFLSAEECIT 246
Query: 364 AAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEADLISGS 423
AA Q +HPN++++S + S+FVT SG+ + ++ YQVS + +VEAD++ +
Sbjct: 247 AAMLQNQHPNITEYSMDRHYGSKFVTVVASGDESMHVNFHGYQVSNQCAAMVEADILCPT 306
Query: 424 TH-PSQAYINET--NDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGFPKEX 480
+ P AY+ ET +++ Y+ ++ ++ KNEY V +N +P PV+YLLV + G PKE
Sbjct: 307 LYTPELAYVRETPLSEEHYITDVQFSMKNEYGAEVMKNGRP-LPVEYLLVDVPAGMPKEP 365
Query: 481 XXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAKLSNF 540
A F NRQA+GQ Q L +Y + L + +NF
Sbjct: 366 HYTFHVGTSNK---SKSAKFNVENRQAIGQLQGGANLIQYSSEFSKNQFLEQ----ATNF 418
Query: 541 HFLLYL-HSIEVLNQQEW 557
HFLLYL + +V EW
Sbjct: 419 HFLLYLVTNDQVQISDEW 436
>Hs8923609 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 608
Score = 291 bits (744), Expect = 3e-78
Identities = 184/569 (32%), Positives = 295/569 (51%), Gaps = 46/569 (8%)
Query: 1 MLLRLRSKLGIHRVSCEGNDNFGSVIEKWANQLRLNVDPDSVSVSTQPGVSKLMTEIAHQ 60
+++R++S G+ R++ + + ++K A + + SV ++ + +T +++
Sbjct: 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK--TGEITASSNK 62
Query: 61 GVESLGLRHGDMVTVEFKVLDTEEKNVSEKEMTNMXXXXXXXXXXXXXXHNKGSIRGKVK 120
+ L ++HGD++ + L + V
Sbjct: 63 SLNLLKIKHGDLLFLFPSSLAGPSSEMETSVPPGFKVFGAP----------------NVV 106
Query: 121 ESALDIELEGETGLIPRSRS-SLCRHGEKGMCEYCSPLPPWDKGYQD--EHSIKHISFHA 177
E +D L + G I RSR LCRHG G C +C PL P+D+ Y + E +KH+SFHA
Sbjct: 107 EDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDEDYLNHLEPPVKHMSFHA 166
Query: 178 YLKQLDEVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSF 237
Y+++L +K L + +I C G H PWP GIC+KCQPSAITL +Q +
Sbjct: 167 YIRKLTGGADKGK-----FVALENISCKIKSGCEG-HLPWPNGICTKCQPSAITLNRQKY 220
Query: 238 RMVDHVEFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHD 297
R VD++ F+ + ++F+D WR TG Q+FGYLYG Y + ++PLGI+A V AI+EPPQ
Sbjct: 221 RHVDNIMFENHTVADRFLDFWRKTGNQQFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIG 280
Query: 298 EQDGLTMDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLS 357
Q+ L + D + E D++A ++GL ++G IFTDL G+V R+KD++FLS
Sbjct: 281 TQNSLELLED---PKAEVVDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLS 337
Query: 358 SLEVIMAAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEA 417
S E I A Q +HPN+ + S G F S+FVT +G + ++ YQVS + LV
Sbjct: 338 SEECITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQCMALVRD 397
Query: 418 D-LISGSTHPSQAYINETNDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGF 476
+ L+ P Y E++ ++YVP++FY +++ + Q A+P PV+YL++ +T F
Sbjct: 398 ECLLPCKDAPELGYAKESSSEQYVPDVFYKDVDKFGNEITQLARP-LPVEYLIIDITTTF 456
Query: 477 PKEXXXXXXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRYVYKACTGNDLAELQAK 536
PK+ FP NR +G++QD+ L Y+ + N +
Sbjct: 457 PKDPVYTFSISQN---------PFPIENRDVLGETQDFHSLATYL----SQNTSSVFLDT 503
Query: 537 LSNFHFLLYLHSIEVLN-QQEWSLLIRTV 564
+S+FH LL+L + EV+ Q SLL+ V
Sbjct: 504 ISDFHLLLFLVTNEVMPLQDSISLLLEAV 532
>7301352 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 1006
Score = 267 bits (683), Expect = 3e-71
Identities = 156/441 (35%), Positives = 238/441 (53%), Gaps = 26/441 (5%)
Query: 2 LLRLRSKLGIHRVSCEGNDNFGSVIEKWANQLRLNVDPDSVSVSTQPGVSKLMTEIAHQG 61
L+R++S GI R+ N + + N L++ D + + +TE+ G
Sbjct: 35 LIRVQSAEGIKRIEISPKSNLKHLYDSVQNALKV----DGFGLFKE---RNFLTELQASG 87
Query: 62 VESLG--LRHGDMVTVEFKVLDTEEKNVSEKEMTNMXXXXXXXXXXXXXXHNKGSIRGKV 119
+ +G LRHGDMV ++ + S + + N V
Sbjct: 88 SQLVGTSLRHGDMVYLK------QMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNV 141
Query: 120 KESALDIELEGETGLIPRSRSS-LCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAY 178
E +D L G I R R S LC H G C +CS L P+D+ Y EH+IKH+SFH+Y
Sbjct: 142 IEDDVDQALSKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHSY 201
Query: 179 LKQLDEVTNKKSSGSSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFR 238
+++ T+ G ++ + N I C H PWPKGICSKCQPSAITL +Q++R
Sbjct: 202 IRKQ---TSGMDQGKYFV--FDDINCRIKPGCRE-HPPWPKGICSKCQPSAITLNRQTYR 255
Query: 239 MVDHVEFQESELINQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDE 298
VD+V F+ ++++ +F++ WRTTG QR GYLYG Y+++ +VPLGI+A V AI+EPPQ
Sbjct: 256 HVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGIRAKVAAIYEPPQEST 315
Query: 299 QDGLTMDMDQVVKEVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSS 358
+D + + D+ +D D +A +GL++IG IFTDL G+V R +S F+++
Sbjct: 316 RDSINIQPDEF---ADDVDAVASALGLKKIGWIFTDLITDDASIGTVKQIRGIESHFITA 372
Query: 359 LEVIMAAKHQLRHPNVSKFSETGLFSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEAD 418
E I A + Q RHPN K++ G+F S+FVT C++G+ +++ + Y VS + LV +
Sbjct: 373 QECITAGELQNRHPNPCKYASNGVFGSKFVTICVTGDKTKQVHMEGYAVSAQCMALVRDN 432
Query: 419 -LISGSTHPSQAYINETNDKR 438
LI P Y+ E+ DK+
Sbjct: 433 CLIPTKDAPELGYVRESTDKQ 453
>ECU07g0770 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 505
Score = 185 bits (469), Expect = 2e-46
Identities = 123/348 (35%), Positives = 168/348 (47%), Gaps = 45/348 (12%)
Query: 133 GLIPRSRSSLCRHGEKGMCEYCSPLPPWDKGYQDEHSIKHISFHAYLKQLDEVTNKKSSG 192
G+ S +C+H MC C+PL PWD+ Y ++ IK++SF +Y + + + KK G
Sbjct: 84 GIKREKDSMMCQHDSNAMCSNCAPLDPWDEKYYKDNMIKYLSFGSYCEMMK--SKKKELG 141
Query: 193 -SSYIPPLSEPNYEINLNCAGGHEPWPKGICSKCQPSAITLQQQSFRMVDHVEFQESELI 251
SY ++ H P K C++CQ I L Q FRMVDHVEF L+
Sbjct: 142 VESY-----------SVGTCEDHGPHAK--CNRCQEKNIILAPQVFRMVDHVEFDGKHLV 188
Query: 252 NQFIDSWRTTGMQRFGYLYGYYKRYDNVPLGIKAVVEAIWEPPQHDEQDGLTMDMDQVVK 311
FI +WR +G QRFG+L G Y ++ +PLG KAVV IWEP Q D DG +
Sbjct: 189 ENFIRNWRESGRQRFGFLVGRYMDHEMIPLGTKAVVSGIWEPEQEDYPDGFVI------- 241
Query: 312 EVEDTDKLAREMGLERIGMIFTDLTDTGLGDGSVYCKRHKDSFFLSSLEVIMAAKHQLRH 371
D GLE +GMI+TD+ + GSV + +FLSSLE+ AK QL H
Sbjct: 242 -TGSMDAPFSGTGLEIVGMIYTDIL---MERGSVTSDKVAKGYFLSSLEIEFIAKMQLMH 297
Query: 372 PNVSKFSETGL-FSSRFVTCCISGNLNQEIDIATYQVSIEAEGLVEADLISGSTHPSQAY 430
P+ + + F SR T ++ + I + YQVS + LV+ Y
Sbjct: 298 PHTVRDGGREMEFGSRLATIVVTAEKDGSIGLQEYQVSNQCMALVKG-----------GY 346
Query: 431 INETNDKR---YVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHG 475
I T D R +IFY K E + A P P ++ LV LTHG
Sbjct: 347 ILPTEDPRRFLATRDIFYRTKAEEAMV---KADPYLPGEFFLVKLTHG 391
>CE08654_1 [YU] KOG2834 Nuclear pore complex rNpl4 component (sc Npl4)
Length = 151
Score = 53.1 bits (126), Expect = 1e-06
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 426 PSQAYINET--NDKRYVPEIFYTRKNEYNLTVKQNAKPAFPVDYLLVSLTHGFPKEXXXX 483
P AY+ ET +++ Y+ ++ ++ KNEY V ++ +P PV+YLLV + G PKE
Sbjct: 56 PKLAYVRETPLSEENYITDVQFSMKNEYGAEVMKHGRP-LPVEYLLVDVPAGMPKEPHYT 114
Query: 484 XXXXXXXXXVFKTVAGFPWTNRQAMGQSQDYTELKRY 520
A F NRQA+GQ Q L +Y
Sbjct: 115 FHVGTSNK---SKSAKFNVENRQAIGQLQGCANLIQY 148
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,264,087
Number of Sequences: 60738
Number of extensions: 1486927
Number of successful extensions: 3549
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3497
Number of HSP's gapped (non-prelim): 13
length of query: 596
length of database: 30,389,216
effective HSP length: 112
effective length of query: 484
effective length of database: 23,586,560
effective search space: 11415895040
effective search space used: 11415895040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)