ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactV6390 suspect: LH E KOG2380 Amino acid transport and metabolism Prephenate dehydrogenase (NADP+)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactV6390 2191359  2192693 445  
         (445 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBR166c [E] KOG2380 Prephenate dehydrogenase (NADP+)                  593   e-169
SPCC1494.04c [E] KOG2380 Prephenate dehydrogenase (NADP+)             435   e-122

>YBR166c [E] KOG2380 Prephenate dehydrogenase (NADP+)
          Length = 452

 Score =  593 bits (1530), Expect = e-169
 Identities = 292/443 (65%), Positives = 338/443 (75%), Gaps = 2/443 (0%)

Query: 4   TDEQIAKWKHEKTXXXXXXXXXXXXYATRFSKAGWRVICCDRPXXXXXXXXXXXXXXXNV 63
           ++++I +WK  K             YA +F+ AGW VICCDR                 +
Sbjct: 3   SEDKIEQWKATKVIGIIGLGDMGLLYANKFTDAGWGVICCDREEYYDELKEKYASAKFEL 62

Query: 64  VENGTLVSRASDYIIYSVEAENIENIVKMYGAASKVGSIVGGQTSCKNAEINAFEKYLPS 123
           V+NG LVSR SDYIIYSVEA NI  IV  YG +SKVG+IVGGQTSCK  EI AFEKYLP 
Sbjct: 63  VKNGHLVSRQSDYIIYSVEASNISKIVATYGPSSKVGTIVGGQTSCKLPEIEAFEKYLPK 122

Query: 124 DCEIVSVHSLHGPKVNTEGQPLVLINHRTKSQESFDLVESLMSCLKSQHVYLSYEEHDKI 183
           DC+I++VHSLHGPKVNTEGQPLV+INHR++  ESF+ V S+M+CLKS+ VYL+YEEHDKI
Sbjct: 123 DCDIITVHSLHGPKVNTEGQPLVIINHRSQYPESFEFVNSVMACLKSKQVYLTYEEHDKI 182

Query: 184 TADTQAVTHAAFLSMGVAWYKIRIYPWTLGVNKWHGSLENVKVNISLRIYSNKWHVYAGL 243
           TADTQAVTHAAFLSMG AW KI+IYPWTLGVNKW+G LENVKVNISLRIYSNKWHVYAGL
Sbjct: 183 TADTQAVTHAAFLSMGSAWAKIKIYPWTLGVNKWYGGLENVKVNISLRIYSNKWHVYAGL 242

Query: 244 ALTNPAAHKQITQYAKSATELFTLFVEGKKDELTKRLQVAKDFVFGNHNGXXXXXXXXXX 303
           A+TNP+AH+QI QYA SATELF+L ++ K+ ELT RL  AK FVFG H G          
Sbjct: 243 AITNPSAHQQILQYATSATELFSLMIDNKEQELTDRLLKAKQFVFGKHTGLLLLDDTILE 302

Query: 304 XXXXSKHEKGEDN--EVIPNSHLSLLAIVDSWYQLGIDPYDHMICSTPLFRIFLGVSEYL 361
               SK   G  N  + +PNSHLSLLAIVDSW+QLGIDPYDHMICSTPLFRIFLGVSEYL
Sbjct: 303 KYSLSKSSIGNSNNCKPVPNSHLSLLAIVDSWFQLGIDPYDHMICSTPLFRIFLGVSEYL 362

Query: 362 FLTDGLLEQTIDAAINVPEFRADDMEFVIAARSWSNIVSFGNFELYKRQFEEVQQFFTPM 421
           FL  GLLEQTIDAAI+   F  DD+EFVI+AR WS++VSF NF++YK+QF+ VQ+FF PM
Sbjct: 363 FLKPGLLEQTIDAAIHDKSFIKDDLEFVISAREWSSVVSFANFDIYKKQFQSVQKFFEPM 422

Query: 422 FPEANAIGNEMIKTILEHSKSKN 444
            PEAN IGNEMIKTIL HS  ++
Sbjct: 423 LPEANLIGNEMIKTILSHSSDRS 445


>SPCC1494.04c [E] KOG2380 Prephenate dehydrogenase (NADP+)
          Length = 431

 Score =  435 bits (1119), Expect = e-122
 Identities = 221/415 (53%), Positives = 281/415 (67%), Gaps = 10/415 (2%)

Query: 29  YATRFSKAGWRVICCDRPXXXXXXXXXXXXXXXNVVENGTLVSRASDYIIYSVEAENIEN 88
           YA   SKAGWRV  CDRP                V+++G  VSR SDYI+YSVEAE+I+ 
Sbjct: 19  YAEYISKAGWRVNVCDRPENYESIQATYGNGGYTVLKDGFQVSRTSDYILYSVEAEHIDK 78

Query: 89  IVKMYGAASKVGSIVGGQTSCKNAEINAFEKYLPSDCEIVSVHSLHGPKVNTEGQPLVLI 148
           +V +YG A+KVG+IVGGQTSCK  E+NAFEKYLP D +I+S HS+HGPKVN + QPLV+I
Sbjct: 79  VVALYGPATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDIISCHSMHGPKVNPKSQPLVII 138

Query: 149 NHRTKSQESFDLVESLMSCLKSQHVYLSYEEHDKITADTQAVTHAAFLSMGVAWYKIRIY 208
            HR  S E F++V  ++SC KS  VYLS +EHD+ITADTQAVTHAAFL+MG+AW+    Y
Sbjct: 139 RHRA-SDEHFEIVNEILSCFKSSVVYLSAKEHDRITADTQAVTHAAFLTMGLAWHANNQY 197

Query: 209 PWTLGVNKWHGSLENVKVNISLRIYSNKWHVYAGLALTNPAAHKQITQYAKSATELFTLF 268
           PW   +N+W G +EN+K+N+S+RIYS+KWHVYAGLA+ NP A +QI QYA S TELF L 
Sbjct: 198 PWE--INRWCGGIENIKMNLSMRIYSSKWHVYAGLAILNPEAQRQIQQYASSVTELFKLA 255

Query: 269 VEGKKDELTKRLQVAKDFVFG----NHNGXXXXXXXXXXXXXXSKHEKGEDNEVIPNSHL 324
           + GK  E   R++ A  FVFG     ++               S   K E      NSHL
Sbjct: 256 ISGKAKEYEDRIRNAGKFVFGENMDRNSSGLLLSDELLDQYSISNIPKDESKR---NSHL 312

Query: 325 SLLAIVDSWYQLGIDPYDHMICSTPLFRIFLGVSEYLFLTDGLLEQTIDAAINVPEFRAD 384
           S+LAIVDSW +LGI P +HMICSTPLFR+++GVSEY+F   GLL+  I  A    +F  D
Sbjct: 313 SILAIVDSWSKLGIHPQNHMICSTPLFRLWVGVSEYVFRHPGLLDSCIYTATKHNDFSPD 372

Query: 385 DMEFVIAARSWSNIVSFGNFELYKRQFEEVQQFFTPMFPEANAIGNEMIKTILEH 439
           D+EFV+A RSWS  V+  +F  YK++F E Q++F P F EA  +GN MI  +LE+
Sbjct: 373 DLEFVVAVRSWSECVAAKDFTTYKKRFLETQEYFRPRFEEATRVGNAMISKLLEN 427


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,682,866
Number of Sequences: 60738
Number of extensions: 901536
Number of successful extensions: 1831
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1825
Number of HSP's gapped (non-prelim): 2
length of query: 445
length of database: 30,389,216
effective HSP length: 110
effective length of query: 335
effective length of database: 23,708,036
effective search space: 7942192060
effective search space used: 7942192060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)