ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0065 suspect: LH DL KOG3194 Cell cycle control, cell division, chromosome partitioning Checkpoint 9-1-1 complex, RAD1 component r_klactVI0065 suspect: LH DL KOG3194 Replication, recombination and repair Checkpoint 9-1-1 complex, RAD1 component
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI0065   17682  18791 370  
         (370 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOR368w [DL] KOG3194 Checkpoint 9-1-1 complex RAD1 component          342   4e-94
SPAC1952.07 [DL] KOG3194 Checkpoint 9-1-1 complex RAD1 component       69   1e-11

>YOR368w [DL] KOG3194 Checkpoint 9-1-1 complex RAD1 component
          Length = 401

 Score =  342 bits (878), Expect = 4e-94
 Identities = 190/397 (47%), Positives = 267/397 (66%), Gaps = 39/397 (9%)

Query: 7   FYATTVHLDHIVTALNCLTPFGVKGEMLITIDKNGLSFAQENNHVIKIQLVLSRELFQTF 66
           F A+TVHL+HI TAL+CLTPFG K ++LI ID +GLSF +ENNHVIKIQL+LSRELF ++
Sbjct: 11  FSASTVHLEHITTALSCLTPFGSKDDVLIFIDADGLSFVRENNHVIKIQLLLSRELFMSY 70

Query: 67  HYSPITETSLTKVSLRLDHVLDSLNISN-DRNDIIECTLTYNGDGSPFILIFEDNMITES 125
            Y   TE  + K+ ++++H+LDS+++ N + +DI+ECTL+Y+G GSPF+LIFED+ I+E 
Sbjct: 71  SYRNETEDHM-KLCVKINHILDSVSVMNRNSDDIVECTLSYDGHGSPFVLIFEDSFISER 129

Query: 126 VEYSTYLLKDLDNTGLVLDRTRLQFECIIKGDVLHNALHDLKEIGCKDCYFYAIHNETTK 185
           VEYSTYL+KD D  GL LDR R+ FE IIKG+ LH+AL DLKEIGCK+CY YA   E   
Sbjct: 130 VEYSTYLIKDFDTNGLELDRERISFEAIIKGEALHSALKDLKEIGCKECYVYA-KTEAND 188

Query: 186 KPLFALISRSQQGLSKIILPNERSILEKFEIYANDSTTLLYDHPMISVFDYGMLDKIRAS 245
           + +FALIS+SQ G SKI LP+ RSILEK +++  DSTT++    +I  FD+   DKIR S
Sbjct: 189 ENVFALISKSQLGFSKIKLPSNRSILEKLQVFDGDSTTVIDGFAVIGFFDFTSFDKIRKS 248

Query: 246 ARIASKIMIRRDVHGLMTVNILNETKDIL-----RPNDQEYKRTRAISGNNLPSHYPGII 300
            +IASK++ R DVHG+++VNIL++T D++     RP++    R  +I    LP  YPGI+
Sbjct: 249 TKIASKVLFRMDVHGVLSVNILSQTDDVIITDTTRPSN---NRPGSIRQLQLPKDYPGIV 305

Query: 301 IEICMLEKALPELPDVNEIKVMMIEYMGSESRHNFLPNT------QQPPKKTAHDD---- 350
           IE+CMLEK   +     EI+++M E     +R++F  +T           +T++D+    
Sbjct: 306 IEVCMLEKESIDEAAQTEIELLM-ETNELGNRNSFKKSTIRKRYGTDKGNETSNDNLLQL 364

Query: 351 --------KEEENSDGYEA---------ASQDLPLFF 370
                    EEEN+   E+          ++D+P+FF
Sbjct: 365 NGKKIKLPSEEENNKNRESEDEENHCKYPTKDIPIFF 401


>SPAC1952.07 [DL] KOG3194 Checkpoint 9-1-1 complex RAD1 component
          Length = 323

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 65/280 (23%), Positives = 122/280 (43%), Gaps = 36/280 (12%)

Query: 6   IFYATTVHLDHIVTALNCLTPFGVKGEMLITIDKNGLSFAQENNHVIKIQLVLSRELFQT 65
           +F A TV L  I + L C+       E  I I   GL FA E +  ++    L + LFQT
Sbjct: 1   MFQAETVCLKQIQSTLRCID---FSKECTIEITSRGLRFAVEESQSLQAHAFLDKSLFQT 57

Query: 66  FHYSPITETSLTKVSLRLDHVLDSLNISNDRNDIIE------------------CTLTYN 107
           F++   ++         +  +L SL+I  D  + I                   C + YN
Sbjct: 58  FNFQGDSDGDTYMFQTMISPLLQSLSIYTDGKERISTSAWDQPTVNIMHKRGVICKVQYN 117

Query: 108 GDGSPFILIFEDNMITESVEYSTYLLKDLDNTGLVLDRTRLQFECIIKGDVLHNALHDLK 167
           G G PFI   E+ M   +       ++  D+  +    + L  + I+K + L++AL +L 
Sbjct: 118 GPGCPFIWEVEE-MAGYATACELLTMECEDDVDINRLASTLCTKIIMKSNWLYDALVELD 176

Query: 168 EIGCKDCYFYAIHNETTKKPLFALISRSQQGLSKIILPNERSILEKFEIYANDSTTLLYD 227
               ++     I + +++K  F L        ++I  PNE+S+LE FE  + ++ +    
Sbjct: 177 NNMGEN----LIIHTSSQKSTFLLRCVGALSTTEIEYPNEKSVLESFETDSENTYS---- 228

Query: 228 HPMISVFDYGMLDKIRASARIASKIMIRRDVHGLMTVNIL 267
                 + + ++     + ++ SK+ +R D +G +++ I+
Sbjct: 229 ------YRFSLIRHALKALQVGSKVNLRIDENGTLSIQIM 262


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,415,809
Number of Sequences: 60738
Number of extensions: 949127
Number of successful extensions: 2359
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2352
Number of HSP's gapped (non-prelim): 2
length of query: 370
length of database: 30,389,216
effective HSP length: 108
effective length of query: 262
effective length of database: 23,829,512
effective search space: 6243332144
effective search space used: 6243332144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)