ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0069 good J KOG3406 Translation, ribosomal structure and biogenesis 40S ribosomal protein S12
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0069 19450 19049 -134
(134 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR369c [J] KOG3406 40S ribosomal protein S12 181 2e-46
SPCC962.04 [J] KOG3406 40S ribosomal protein S12 123 6e-29
SPBC1685.02c [J] KOG3406 40S ribosomal protein S12 118 2e-27
Hs14277700 [J] KOG3406 40S ribosomal protein S12 106 1e-23
CE26896 [J] KOG3406 40S ribosomal protein S12 100 9e-22
Hs18553260 [J] KOG3406 40S ribosomal protein S12 95 2e-20
7294509 [J] KOG3406 40S ribosomal protein S12 94 5e-20
At2g32060 [J] KOG3406 40S ribosomal protein S12 89 2e-18
At1g15930 [J] KOG3406 40S ribosomal protein S12 86 1e-17
Hs17463746 [J] KOG3406 40S ribosomal protein S12 75 2e-14
Hs20548341 [J] KOG3406 40S ribosomal protein S12 72 2e-13
ECU01g0920 [J] KOG3406 40S ribosomal protein S12 58 4e-09
Hs22055843 [J] KOG3406 40S ribosomal protein S12 52 3e-07
Hs20471875 [J] KOG3406 40S ribosomal protein S12 50 8e-07
Hs17462075_1 [J] KOG3406 40S ribosomal protein S12 50 1e-06
>YOR369c [J] KOG3406 40S ribosomal protein S12
Length = 143
Score = 181 bits (460), Expect = 2e-46
Identities = 100/143 (69%), Positives = 109/143 (75%), Gaps = 9/143 (6%)
Query: 1 MSDVEEVQQVP-------VAELTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLA 53
MSDVEEV +V AE+TIEDALKVVLRT+LVHDGLARGLRES KALTRGE L
Sbjct: 1 MSDVEEVVEVQEETVVEQTAEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLV 60
Query: 54 VLVESVTEEAISKLVQGLAT--ENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXX 111
VLV SVTE I KLV+GLA EN VPLIKVADAKQLGEWAGLGKIDR+GNARK
Sbjct: 61 VLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASV 120
Query: 112 XXXKNWGADTQEREILLEHFSQQ 134
KNWGA+T E +++EHFSQQ
Sbjct: 121 VVVKNWGAETDELSMIMEHFSQQ 143
>SPCC962.04 [J] KOG3406 40S ribosomal protein S12
Length = 145
Score = 123 bits (309), Expect = 6e-29
Identities = 66/127 (51%), Positives = 84/127 (65%)
Query: 6 EVQQVPVAELTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAIS 65
EV+ +++EDALK VL+ +LVHDGLARG+RE++KAL R + L VL ES +EA
Sbjct: 18 EVEAAAPETVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYV 77
Query: 66 KLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQERE 125
KLV+ L E+ PLIKVAD K LGEWAGL +DRDGNARK ++G D+ +
Sbjct: 78 KLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQ 137
Query: 126 ILLEHFS 132
LLE FS
Sbjct: 138 KLLESFS 144
>SPBC1685.02c [J] KOG3406 40S ribosomal protein S12
Length = 148
Score = 118 bits (296), Expect = 2e-27
Identities = 65/135 (48%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Query: 5 EEVQQVPVAE-------LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVE 57
E ++ V V E L++ED+LK VL+ +LVHDGLARG+RE++KAL R + L VL E
Sbjct: 13 EVIETVEVVEEETGSSPLSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCE 72
Query: 58 SVTEEAISKLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNW 117
S +EA KLV+ L E+ PL+KVAD K LGEWAGL +DRDGNARK ++
Sbjct: 73 SCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDY 132
Query: 118 GADTQEREILLEHFS 132
G D+ + LL F+
Sbjct: 133 GEDSVALQTLLSSFA 147
>Hs14277700 [J] KOG3406 40S ribosomal protein S12
Length = 132
Score = 106 bits (264), Expect = 1e-23
Identities = 52/117 (44%), Positives = 77/117 (65%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAISKLVQGLATE 74
+ + AL+ VL+T+L+HDGLARG+RE+AKAL + + L VL + E KLV+ L E
Sbjct: 12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71
Query: 75 NNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQEREILLEHF 131
+ + LIKV D K+LGEW GL KIDR+G RK K++G ++Q ++++ E+F
Sbjct: 72 HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYF 128
>CE26896 [J] KOG3406 40S ribosomal protein S12
Length = 140
Score = 99.8 bits (247), Expect = 9e-22
Identities = 59/139 (42%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 1 MSDVE-EVQQVPVA----ELTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVL 55
MSD +VQ P A + E AL+ VLR + DGLA+GL E+ KAL + E VL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 56 VESVTEEAISKLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXK 115
E+ E KLV+ L E+ +PLIKVAD K +GE+ GL K D++G ARK
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 116 NWGADTQEREILLEHFSQQ 134
NWG + Q R IL ++F+ +
Sbjct: 121 NWGNEEQGRAILTDYFASK 139
>Hs18553260 [J] KOG3406 40S ribosomal protein S12
Length = 132
Score = 95.1 bits (235), Expect = 2e-20
Identities = 47/117 (40%), Positives = 74/117 (63%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAISKLVQGLATE 74
+ + AL+ VL+T+L+H+GLA G+ ++AKAL + + L VL + E KLV+ L E
Sbjct: 12 MDVNTALQEVLKTALIHNGLACGICKAAKALDKRQAHLCVLASNCDEPMDVKLVEALCAE 71
Query: 75 NNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQEREILLEHF 131
+ + LIKV D K+LGEW GL K DR+G RK K++G ++Q ++++ E+F
Sbjct: 72 HQIDLIKVDDNKKLGEWVGLCKTDREGKPRKVVGRSCVVVKDYGTESQAKDVIEEYF 128
>7294509 [J] KOG3406 40S ribosomal protein S12
Length = 139
Score = 94.0 bits (232), Expect = 5e-20
Identities = 50/133 (37%), Positives = 76/133 (56%), Gaps = 2/133 (1%)
Query: 3 DVEEVQQVPVAE--LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVT 60
DV+ PV + + I AL+ VL+ SL+ DGL G+ ++ KAL + + L +L ES
Sbjct: 5 DVDVPSAAPVLDGAMDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFD 64
Query: 61 EEAISKLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGAD 120
E KLV L E+ +PLI+V K+LGEW+GL KID++G RK K++G +
Sbjct: 65 EPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEE 124
Query: 121 TQEREILLEHFSQ 133
T +++ +H Q
Sbjct: 125 TPALDVVKDHLRQ 137
>At2g32060 [J] KOG3406 40S ribosomal protein S12
Length = 144
Score = 88.6 bits (218), Expect = 2e-18
Identities = 48/127 (37%), Positives = 72/127 (55%), Gaps = 1/127 (0%)
Query: 4 VEEVQQVPVAELTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEA 63
V E +P ++ + AL++ +R S + G+ RGL ESAK + + QL VL E +
Sbjct: 15 VAEAAVIP-EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPD 73
Query: 64 ISKLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQE 123
KLV+ L ++++ L+ V AK LGEWAGL KID +GNARK K++G +T
Sbjct: 74 YVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTA 133
Query: 124 REILLEH 130
I+ +H
Sbjct: 134 LNIVKKH 140
>At1g15930 [J] KOG3406 40S ribosomal protein S12
Length = 144
Score = 85.9 bits (211), Expect = 1e-17
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 4 VEEVQQVPVAELTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEA 63
V E +P ++ + AL++ LR + + G+ RGL E AK + + QL VL E +
Sbjct: 15 VAEPAAIP-EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPD 73
Query: 64 ISKLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQE 123
KLV+ L ++ V L+ V AK LGEWAGL KID +GNARK K++G +T
Sbjct: 74 YVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTA 133
Query: 124 REILLEHFSQQ 134
I+ +H + Q
Sbjct: 134 LSIVNKHIASQ 144
>Hs17463746 [J] KOG3406 40S ribosomal protein S12
Length = 118
Score = 75.5 bits (184), Expect = 2e-14
Identities = 42/117 (35%), Positives = 68/117 (57%), Gaps = 14/117 (11%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAISKLVQGLATE 74
+ + AL+ VL+T+L+HDGLARG+ E+A+AL + + L V+ L E
Sbjct: 12 MDVNTALQEVLKTALIHDGLARGIHEAAEALDKCQAHL--------------FVEALCHE 57
Query: 75 NNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQEREILLEHF 131
+ + LIKV D K+LGE GL KI+R+G K K++G ++Q ++++ E+F
Sbjct: 58 HQINLIKVDDNKKLGERIGLCKINREGKPCKVVGCSCVVVKDYGKESQAKDVIQEYF 114
>Hs20548341 [J] KOG3406 40S ribosomal protein S12
Length = 110
Score = 72.4 bits (176), Expect = 2e-13
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAISKLVQGLATE 74
+ I AL+ VL+T+L+HDGLARG+ E+AK L +G+ L VL + E KLV+ + +
Sbjct: 12 MDINTALQEVLKTTLIHDGLARGIHEAAKPLDKGQAHLYVLASNCDETVYVKLVEAICAK 71
Query: 75 NNVPLIKVADAKQLGEW 91
+ + IKV D K++GEW
Sbjct: 72 HQINFIKVDDNKKVGEW 88
>ECU01g0920 [J] KOG3406 40S ribosomal protein S12
Length = 134
Score = 57.8 bits (138), Expect = 4e-09
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 1 MSDVEEVQQVPVAELTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVT 60
MS+++E P E+T+++AL V + S + L+RG +E+ K + + ++ E+
Sbjct: 1 MSEMQEPMMEP--EMTLQEALSKVCKVSRTYCKLSRGAKETTKKMLADKMSFVMVAENA- 57
Query: 61 EEAISKLVQGLATENNVPLIKVADAKQLGEWAGLGKIDRDGNAR 104
E ISKLV LA + N+P+I + +LG G+ + G R
Sbjct: 58 EPRISKLVMALAKKKNIPVISIGSCLELGRIVGVENVSSSGKVR 101
>Hs22055843 [J] KOG3406 40S ribosomal protein S12
Length = 96
Score = 51.6 bits (122), Expect = 3e-07
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAISKLVQGLATE 74
+ + AL+ VL+ +L+HDGLARG+RE+AKAL + S LV+ L E
Sbjct: 12 MDLNTALQEVLKAALIHDGLARGIREAAKALDKCWAHPCAAPNSC---LCGWLVKALVAE 68
Query: 75 NNVPLIKVADAKQLGEWAGLGKIDR 99
+ + LIKV D K LGE K DR
Sbjct: 69 HQITLIKVDDNK-LGEGMDHCKTDR 92
>Hs20471875 [J] KOG3406 40S ribosomal protein S12
Length = 115
Score = 50.1 bits (118), Expect = 8e-07
Identities = 32/117 (27%), Positives = 54/117 (45%), Gaps = 17/117 (14%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQLAVLVESVTEEAISKLVQGLATE 74
+ + AL+ VL+T+LVHDG A G+ E+AKAL + + L VL + E KLV+ E
Sbjct: 12 MEVNTALQEVLKTALVHDGPACGILEAAKALDKCQAHLCVLASNCDEPVYVKLVEAFCAE 71
Query: 75 NNVPLIKVADAKQLGEWAGLGKIDRDGNARKXXXXXXXXXKNWGADTQEREILLEHF 131
+ ++ R + K K+ G + Q ++++ E+F
Sbjct: 72 HRT-----------------NRLKRGESGCKVVGGSCVEVKDAGKECQAKDVIKEYF 111
>Hs17462075_1 [J] KOG3406 40S ribosomal protein S12
Length = 90
Score = 49.7 bits (117), Expect = 1e-06
Identities = 32/79 (40%), Positives = 46/79 (57%), Gaps = 4/79 (5%)
Query: 15 LTIEDALKVVLRTSLVHDGLARGLRESAKALTRGEGQ---LAVLVESVTEEAISKLVQGL 71
+ I L+ VL+T+L+HDGLA + ++AKA + + L VL + E KLV+ L
Sbjct: 12 MDINTVLQEVLKTALIHDGLAYEICKAAKASDKCQAHLCVLCVLASNCDEPMYVKLVEAL 71
Query: 72 ATENNVPLIKVADAKQLGE 90
E+ + LIKV D K LGE
Sbjct: 72 CAEHQINLIKVDDQK-LGE 89
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,995,023
Number of Sequences: 60738
Number of extensions: 182131
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 15
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 394
Number of HSP's gapped (non-prelim): 15
length of query: 134
length of database: 30,389,216
effective HSP length: 94
effective length of query: 40
effective length of database: 24,679,844
effective search space: 987193760
effective search space used: 987193760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)