ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0300 good K KOG0215 Transcription RNA polymerase III, second largest subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0300 98331 101756 1142
(1142 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YOR207c [K] KOG0215 RNA polymerase III second largest subunit 2036 0.0
SPAC4G9.08c [K] KOG0215 RNA polymerase III second largest subunit 1659 0.0
7303535 [K] KOG0215 RNA polymerase III second largest subunit 1288 0.0
CE00690 [K] KOG0215 RNA polymerase III second largest subunit 1248 0.0
At5g45140 [K] KOG0215 RNA polymerase III second largest subunit 1177 0.0
ECU11g0370 [K] KOG0215 RNA polymerase III second largest subunit 1122 0.0
ECU10g0250 [K] KOG0214 RNA polymerase II second largest subunit 739 0.0
CE01162 [K] KOG0214 RNA polymerase II second largest subunit 724 0.0
YOR151c [K] KOG0214 RNA polymerase II second largest subunit 723 0.0
At4g21710 [K] KOG0214 RNA polymerase II second largest subunit 719 0.0
Hs4505941 [K] KOG0214 RNA polymerase II second largest subunit 718 0.0
7299847 [K] KOG0214 RNA polymerase II second largest subunit 708 0.0
At3g18090 [K] KOG0214 RNA polymerase II second largest subunit 468 e-131
Hs8922399 [K] KOG0215 RNA polymerase III second largest subunit 463 e-130
At3g23780 [K] KOG0214 RNA polymerase II second largest subunit 416 e-116
CE05629 [K] KOG0216 RNA polymerase I second largest subunit 406 e-112
SPBP23A10.07 [K] KOG0216 RNA polymerase I second largest subunit 405 e-112
ECU03g0440 [K] KOG0216 RNA polymerase I second largest subunit 404 e-112
YPR010c [K] KOG0216 RNA polymerase I second largest subunit 382 e-105
At1g29940 [K] KOG0216 RNA polymerase I second largest subunit 380 e-105
7296211 [K] KOG0216 RNA polymerase I second largest subunit 375 e-103
SPAC23G3.01 [K] KOG0214 RNA polymerase II second largest subunit 312 2e-84
Hs14149912 [K] KOG0216 RNA polymerase I second largest subunit 299 1e-80
Hs22058718 [K] KOG0215 RNA polymerase III second largest subunit 289 2e-77
AtCh015 [K] KOG0214 RNA polymerase II second largest subunit 135 4e-31
Hs9506619 [K] KOG0216 RNA polymerase I second largest subunit 56 3e-07
>YOR207c [K] KOG0215 RNA polymerase III second largest subunit
Length = 1149
Score = 2036 bits (5274), Expect = 0.0
Identities = 1005/1132 (88%), Positives = 1080/1132 (94%), Gaps = 4/1132 (0%)
Query: 14 KDEAFDALLKPVFKGKKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKI 73
KDEAFD LLKPV+KGKKLTDEINTA+DKW+LLPAFLKVKGLVKQHLDSFNYFVD DLKKI
Sbjct: 17 KDEAFDDLLKPVYKGKKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKI 76
Query: 74 IKANEVILSDVDPEFYLKYIDIRVGYKHNGN-KAIMTPPHECRLRDMTYSTPIFVDIEYT 132
IKAN++ILSDVDPEFYLKY+DIRVG K + + K +TPPHECRLRDMTYS PI+VDIEYT
Sbjct: 77 IKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKDYLTPPHECRLRDMTYSAPIYVDIEYT 136
Query: 133 RGRSIVLHRDVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILV 192
RGR+I++H+DVEIGRMPIMLRSNKCIL A E+ MAKLNECPLDPGGYFIVNGTEKVILV
Sbjct: 137 RGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILV 196
Query: 193 QEQLSKNRIIVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVV 252
QEQLSKNRIIVEADEKK IVQASVTSSTHERKSKTYV+TKN KIYLKHNSIAEE+PI +V
Sbjct: 197 QEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIV 256
Query: 253 LKACGVVSDLEIMQLVCGNDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQK 312
LKACG++SDLEIMQLVCGNDSSYQDIFAVNLEE+++L IYTQQQALE+IG KVKT+RRQK
Sbjct: 257 LKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQK 316
Query: 313 LSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKR 372
L+ILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMA+ NPKM+DDRDYVGNKR
Sbjct: 317 LTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKR 376
Query: 373 LELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRA 432
LELAGQL+SLLFEDLFKKFNNDFK +IDKVLKKPNRA YDALL+INVHSNNIT+G+NRA
Sbjct: 377 LELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRA 436
Query: 433 ISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGM 492
ISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGM
Sbjct: 437 ISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGM 496
Query: 493 LCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLNYGVY 552
LCT+DTPEGEACGLVKNLALMTHITTDDEEEPIK++CY+LGVEDI+LIDSAS+HLNYGVY
Sbjct: 497 LCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHLNYGVY 556
Query: 553 LNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVS 612
LNGT+IG+ RFPTKFV+QFR LRRTG+ SEFISIY+N+HQ AVHIATDGGRICRPLIIVS
Sbjct: 557 LNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVS 616
Query: 613 NGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENITHLEIE 672
+GQS V HLR LL G+L FDDFLKLGLVEYLDVNEENDS+IALYEKD+ ++THLEIE
Sbjct: 617 DGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIE 676
Query: 673 SFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMV 732
FT+LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLM YPQQPMV
Sbjct: 677 PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMV 736
Query: 733 KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLK 792
KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNK+SIDRGFGRCETRRK TTVLK
Sbjct: 737 KTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLK 796
Query: 793 RYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDS-- 850
RY NHTQDIIGGMRVDENG+PIWQHQ+LGPDGLGEVGMKV+SGQIY+NKSVPTN++D+
Sbjct: 797 RYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPN 856
Query: 851 -ILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRH 909
Q QY+E PV+YR PEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRH
Sbjct: 857 PNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRH 916
Query: 910 GQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYG 969
GQKGVCGIIVKQED+PFNDQG+VPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYG
Sbjct: 917 GQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYG 976
Query: 970 TCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMH 1029
TCFGGSKLEDMSKILVD GFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMH
Sbjct: 977 TCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMH 1036
Query: 1030 ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCE 1089
ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM+SSDAFEVDVC+
Sbjct: 1037 ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCD 1096
Query: 1090 KCGLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKLGDVFE 1141
KCGLMGYSGWCT+CK+AE+++KMTIPYAAKLLFQELL+MNIAPRL+L D+F+
Sbjct: 1097 KCGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLEDIFQ 1148
>SPAC4G9.08c [K] KOG0215 RNA polymerase III second largest subunit
Length = 1165
Score = 1659 bits (4297), Expect = 0.0
Identities = 823/1148 (71%), Positives = 961/1148 (83%), Gaps = 14/1148 (1%)
Query: 8 NPDGYEKDEAFDALLKPVFKGKKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVD 67
N G KDE+F AL KPV+KGKKL D + T EDKW LLPAFLKVKGLVKQHLDS+NYFVD
Sbjct: 17 NKGGIGKDESFGALFKPVYKGKKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVD 76
Query: 68 VDLKKIIKANEVILSDVDPEFYLKYIDIRVGYK-HNGNKAIMTP--PHECRLRDMTYSTP 124
VDLKKI++ANE + SDV+P FYLKY+DIRVG AI PHECRLRD+TY
Sbjct: 77 VDLKKIVQANEKVTSDVEPWFYLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGAN 136
Query: 125 IFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVN 184
I+VDIEYTRG+ +V R+V IGRMP+MLRSNKC+L G E +MA LNECPLDPGGYFIV
Sbjct: 137 IYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVK 196
Query: 185 GTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIA 244
GTEKVILVQEQLSKNRIIVEA+ KK + QASVTSSTHERKSKTYV+TKN K+YLKHNS+A
Sbjct: 197 GTEKVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVA 256
Query: 245 EEVPIVVVLKACGVVSDLEIMQLVCGNDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTK 304
+++PIVVVLKA G+ SD EI +LV G ++SYQD+FA ++EE A+L IYT QQALE+IG +
Sbjct: 257 DDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGAR 316
Query: 305 VKTVRR---QKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKM 361
VK RR +L +E +E +A V+AH+ V L+FR KA+YI +M RRV+MA+ +P
Sbjct: 317 VKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQ 376
Query: 362 VDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVH 421
VDDRDYVGNKRLELAGQL++LLFEDLFKKFN+D K NIDKVLKKP+R + +DA + VH
Sbjct: 377 VDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVH 436
Query: 422 SNNITTGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSG 481
S++IT GM RA+STGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRI+SQFEK+RKVSG
Sbjct: 437 SDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSG 496
Query: 482 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLID 541
PR+LQ SQFGMLCTSDTPEGEACGLVKNLALMTHITTD+EEEPI ++ Y G+EDI +I
Sbjct: 497 PRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVIS 556
Query: 542 SASIHLN--YGVYLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIAT 599
+H + Y VYLNG I+G +R+P+ FV+ FR LRR+G+ S FI I+ NTHQ+AV I+T
Sbjct: 557 GRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFIST 616
Query: 600 DGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYE 659
DGGRICRPLIIV NG V + H+R L GK F+DFLK GLVEY+DVNEENDS I++YE
Sbjct: 617 DGGRICRPLIIVQNGLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYE 676
Query: 660 KDLSENITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDT 719
+D++ + THLEIE FT+LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQ +RIDT
Sbjct: 677 RDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDT 736
Query: 720 LLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFG 779
LLYLM+YPQQPMVKTKTIELI YDKLPAGQNATVA+MSYSGYDIEDALVLNK+SIDRGFG
Sbjct: 737 LLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFG 796
Query: 780 RCETRRKNTTVLKRYPNHTQDIIGGMRVD-ENGEPIWQHQALGPDGLGEVGMKVESGQIY 838
RC+ K++ ++++YPN T D IG + D E GE +W+H + DGL VG +V+ GQIY
Sbjct: 797 RCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIY 856
Query: 839 VNKSVPTNASDSILTQTQAQ-----YKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLL 893
VNK PTNA D+ +T Q YK TP+ Y+APEP +ID+VM++ +D+DQ LIKVL+
Sbjct: 857 VNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLM 916
Query: 894 RQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIE 953
RQ RRPELGDKFSSRHGQKGVCG+IV+QED+PFNDQG+ PDIIMNPHGFPSRMTVGKMIE
Sbjct: 917 RQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIE 976
Query: 954 LISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFG 1013
L+SGK GVL GTLEYGTCFGG+K+ED S+ILV++G+NYSGKDML SGITGE L+AYIF G
Sbjct: 977 LLSGKVGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMG 1036
Query: 1014 PIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLL 1073
PIYYQKLKHMV+DKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC+IAYGASQLLL
Sbjct: 1037 PIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1096
Query: 1074 ERLMLSSDAFEVDVCEKCGLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPR 1133
ERLM+SSDA +VDVC +CGL+GY GWC SC++ VVKMTIPYAAKLLFQELL+MNI PR
Sbjct: 1097 ERLMISSDACDVDVCGQCGLLGYKGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPR 1156
Query: 1134 LKLGDVFE 1141
L L D F+
Sbjct: 1157 LALEDEFK 1164
>7303535 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1137
Score = 1288 bits (3333), Expect = 0.0
Identities = 648/1113 (58%), Positives = 831/1113 (74%), Gaps = 17/1113 (1%)
Query: 35 INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYID 94
I +KW L+PAFL+VKGLVKQH+DSFN+F++VD+KKI+KANE++ S DP FYLKY+D
Sbjct: 28 IKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGADPLFYLKYLD 87
Query: 95 IRVG---YKHNGNKAIMTPPHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIM 151
+RVG N T PHECRLRD TYS PI VDIEYTRG + ++ IGRMP+M
Sbjct: 88 VRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLM 147
Query: 152 LRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNI 211
LR + C L G +E +++KLNECPLDPGGYF+V G EKVIL+QEQLS N+++ E + +
Sbjct: 148 LRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTE--DFNGV 205
Query: 212 VQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQLVCGN 271
VQ VTSSTHE+KS+T V++K+ K YLKHNS+ +++PIVV+ KA GVVSD EI L+ G
Sbjct: 206 VQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLI-GI 264
Query: 272 DSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSIL---QEGIEAIATTVI 328
DS Q+ F +L +A LK++TQQ+ALE++G+K+ R Q + +E E + TT++
Sbjct: 265 DSKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTTIL 324
Query: 329 AHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLF 388
AH+ V+ + + KA+Y++MM RRV+ A + + DDRDY GNKRLELAG L+S++FEDLF
Sbjct: 325 AHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLF 384
Query: 389 KKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRAISTGNWSLKRFKMERA 448
K+ N + K DK + K A+ +D + ++ + IT G+ AIS+GNW++KRFKMERA
Sbjct: 385 KRMNWELKTIADKNIPKVKAAQ-FDVVK--HMRAAQITAGLESAISSGNWTIKRFKMERA 441
Query: 449 GVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVK 508
GVT VLSRLSYISALGMMTR++SQFEK+RKVSGPR+LQPSQ+GMLC SDTPEGEACGLVK
Sbjct: 442 GVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVK 501
Query: 509 NLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLN--YGVYLNGTIIGTTRFPTK 566
NLALMTHITT+ EE P+ + + GVEDI + I+ + V++NG ++G T
Sbjct: 502 NLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKH 561
Query: 567 FVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSL 626
V R +RR GR ++S++T+ Q+ ++I TDGGR+CRP +IV N + V HL L
Sbjct: 562 LVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDEL 621
Query: 627 LAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENITHLEIESFTVLGAVAGLIPY 686
G +FDDFL GL+EYLDVNEENDSFIA E + + THLEIE FT+LG AGL+PY
Sbjct: 622 NRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPY 681
Query: 687 PHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLP 746
PHHNQSPRNTYQCAMGKQA+G I YNQ RID+L+Y ++YP PMVK+KTIEL ++DKLP
Sbjct: 682 PHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLP 741
Query: 747 AGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQD-IIGGM 805
AGQNATVAVMSYSGYDIEDAL+LNKASIDRG+GRC + + +KRY N T D I+G M
Sbjct: 742 AGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPM 801
Query: 806 RVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQ--YKETP 863
+ + I++H L DG+ G +V++ QI +NK +P S + L AQ Y P
Sbjct: 802 KDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVP 861
Query: 864 VVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQED 923
+ Y+ PEPS+I++VM+S + + LIK+LLRQ R PE+GDKFSSRHGQKGV G+IV+QED
Sbjct: 862 ISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQED 921
Query: 924 LPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKI 983
+PFND G+ PD+IMNPHGFPSRMTVGK +EL+ GKAG+L G YGT FGGSK+ED+
Sbjct: 922 MPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAE 981
Query: 984 LVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1043
L +GFNY GKD YSGITG L+AYI+ GP+YYQKLKHMV DKMHARARGP+AVLTRQP
Sbjct: 982 LERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQP 1041
Query: 1044 TEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGWCTSC 1103
T+GRSR+GGLRLGEMERDC+I+YGAS L++ERLM+SSDAFEVDVC CG M Y WC C
Sbjct: 1042 TQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFC 1101
Query: 1104 KTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKL 1136
+++ +V K+++PYA KLLFQEL +MN+ P++ L
Sbjct: 1102 QSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1134
>CE00690 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1207
Score = 1248 bits (3230), Expect = 0.0
Identities = 629/1129 (55%), Positives = 825/1129 (72%), Gaps = 36/1129 (3%)
Query: 39 EDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVG 98
EDKW L+PAFLKV+GLVKQHL SF++FV +++ I+ +N+ I SD +P FYLKY+DIR+G
Sbjct: 79 EDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDANPNFYLKYLDIRIG 138
Query: 99 YKHNGNKAIMT----PPHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRS 154
+ MT P ECRLRDMTYS PI VDIEYTRG V +D+ IGRMPIMLRS
Sbjct: 139 KPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRS 198
Query: 155 NKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQA 214
+KCIL AE ++A++ ECP DPGGYF+V G+EKVIL+QEQLSKNRI+V + K + Q
Sbjct: 199 SKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKEL-QC 257
Query: 215 SVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQLVCGNDSS 274
V SST ERKSKTYV K K ++HN + ++VP+ ++ KA GV SD +I+ + G++
Sbjct: 258 EVLSSTSERKSKTYVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTI-GHEEK 316
Query: 275 YQDIFAVNLEEAAELKIYTQQQALEFIGTKVK--------TVRRQKLSIL-----QEGIE 321
Y FA LEE+ +YTQQQAL ++ +KVK ++ +S+L E ++
Sbjct: 317 YVSAFAQTLEESINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVD 376
Query: 322 AIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMS 381
++ ++I H+ +F+ KA+Y+ +MTRR++ +DDRD+ GNKRLELAG L+S
Sbjct: 377 FLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLS 436
Query: 382 LLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRAISTGNWSLK 441
LLFED+FK+FN++ K D L K A + + ++ + IT + A+STGNW +K
Sbjct: 437 LLFEDVFKRFNSELKRIADNALMKTMAAPLD---IVKHMRQDMITNTIVNAMSTGNWIIK 493
Query: 442 RFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEG 501
RF+MER GVT VLSRLSYISALGMMTRI+S FEK+RKVSGPR+LQPSQ+GMLC SDTPEG
Sbjct: 494 RFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 553
Query: 502 EACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHL--NYGVYLNGTIIG 559
EACGLVKNLAL++HITTD +E+P+ R+ GVED+ + + ++ N ++LNG +IG
Sbjct: 554 EACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIG 613
Query: 560 TTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVT 619
T P + V R LRR+G SEF+S+ + ++V I++DGGR+CRP IIV NG +T
Sbjct: 614 TAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLT 673
Query: 620 ADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENITHLEIESFTVLGA 679
H++ L GK+ F+DF+ G+VEYLDVNE ND+ IA+Y +++ THLEIE FT+LG
Sbjct: 674 QAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGV 733
Query: 680 VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIEL 739
AGLIPYPHHNQSPRNTYQCAMGKQA+G IAYNQ KRID+++YL+ YPQ+P+VK+KTIEL
Sbjct: 734 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIEL 793
Query: 740 IDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQ 799
+++KLPAG N +AVMSYSGYDIEDALVLNKAS+DRG+GRC + K+YPN T
Sbjct: 794 TNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTF 853
Query: 800 DIIGGMRVDENG-EPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSI------- 851
D + G +D N +PI++H+ L +G+ G ++ Q +NK +P + +S
Sbjct: 854 DRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASA 913
Query: 852 ----LTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSS 907
+ Q YK+ + Y+ P PS+ ++V+++ ++++ L KVLLRQ RRPELGDKFSS
Sbjct: 914 NTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSS 973
Query: 908 RHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLE 967
RHGQKGVCG+I +QED+PFND G+VPD+IMNPHG+PSRMTVGK++EL+SGKAGV+NGT
Sbjct: 974 RHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYH 1033
Query: 968 YGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1027
YGT FGG +++D+ + L G+NY GKDML SGITG+ L AYI+FGPIYYQKLKHMVLDK
Sbjct: 1034 YGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDK 1093
Query: 1028 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDV 1087
MHARARGPRA LTRQPTEGRSR+GGLRLGEMERDC+IAYGAS LL+ERLM+SSD F+VDV
Sbjct: 1094 MHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDV 1153
Query: 1088 CEKCGLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKL 1136
C CG++G GWC C++++ + + IPYA KLLFQEL +MNI PRL L
Sbjct: 1154 CTGCGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRLDL 1202
>At5g45140 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1194
Score = 1177 bits (3044), Expect = 0.0
Identities = 603/1126 (53%), Positives = 793/1126 (69%), Gaps = 42/1126 (3%)
Query: 29 KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEF 88
+KL+ I + DK+ L+P FLKV+GLVKQHLDSFNYF++V + KI+KAN I S VDP
Sbjct: 41 EKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSI 100
Query: 89 YLKYIDIRVGYKH--NGNKAIMTPPHECRLRDMTYSTPIFVDIEYTRG----RSIVLHRD 142
YL++ +RVG N N PH CRL DMTY+ PIFV+IEY G ++ +
Sbjct: 101 YLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDN 160
Query: 143 VEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 202
V IGRMPIMLRS +C+L G E ++A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNRII
Sbjct: 161 VIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRII 220
Query: 203 VEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDL 262
+++D+K NI ASVTSST KSKT + + +KIYL + +++PI++VLKA G+ SD
Sbjct: 221 IDSDKKGNI-NASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQ 279
Query: 263 EIMQLVCGNDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRR--------QKLS 314
EI+Q+V G D + ++EE + TQ+QAL+++ KVK + + LS
Sbjct: 280 EIVQMV-GRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPEKDGRALS 338
Query: 315 ILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLE 374
IL++ +AH+ V +FR+K Y+ +M RR++ A+ N +DD+DYVGNKRLE
Sbjct: 339 ILRD-------LFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLE 391
Query: 375 LAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSN-NITTGMNRAI 433
L+GQL+SLLFEDLFK ++ N+D +L KP RA +D +N S +I+ G+ R +
Sbjct: 392 LSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTL 451
Query: 434 STGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGML 493
STGN+ +KRF+M R G+T VL+RLS+I ++G +T+IS QFEKSRKVSGPR+LQPSQ+GML
Sbjct: 452 STGNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGML 511
Query: 494 CTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHL--NYGV 551
C DTPEGE+CGLVKNLALMTH+TTD+EE P+ +CY LGV D+ ++ + +H ++ V
Sbjct: 512 CPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLV 571
Query: 552 YLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIV 611
LNG I+G P F + R LRR G+ EF+S++TN Q V++A+D GR+CRPL+I
Sbjct: 572 ILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIA 631
Query: 612 SNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENITHLEI 671
G S V H++ L G FDDF++ GL+EYLDVNEEN++ + L + + TH+EI
Sbjct: 632 DKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALVCLRAEAAKADTTHIEI 691
Query: 672 ESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPM 731
E FT+LG VAGLIPYPHHNQSPRNTYQCAMGKQA+G IAYNQ R+DTLLYL++YPQ+P+
Sbjct: 692 EPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPL 751
Query: 732 VKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVL 791
+ T+TIEL+ YDKL AGQNATVAVMS+SGYDIEDA+V+NK+S+DRGFGRC +K +
Sbjct: 752 LTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMS 811
Query: 792 KRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSI 851
++Y N T D I + G + Q L DGL G + IY+NK VP +
Sbjct: 812 QKYDNCTADRI--LIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKF 869
Query: 852 LTQ-TQAQYKETPVVYRAP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSR 908
+ + +QY+ ++ P E +D+V + Q IK ++R RRPELGDKFSSR
Sbjct: 870 TSALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSR 929
Query: 909 HGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEY 968
HGQKGVCGII++QED PF++ G+ PD+IMNPHGFPSRMTVGKMIEL+ KAGV G Y
Sbjct: 930 HGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHY 989
Query: 969 GTCFG-----GSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHM 1023
G+ FG K+E +S LV+ GF+YSGKD+LYSGI+GE ++AYIF GPIYYQKLKHM
Sbjct: 990 GSAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHM 1049
Query: 1024 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAF 1083
VLDKMHAR GPR ++TRQPTEG+S++GGLR+GEMERDC+IAYGAS L+ ERLM+SSD F
Sbjct: 1050 VLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPF 1109
Query: 1084 EVDVCEKCGLMGYSGW------CTSCKTAEHVVKMTIPYAAKLLFQ 1123
EV VC CGL+GY + CT+CK +++ M +PYA KLLFQ
Sbjct: 1110 EVQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQ 1155
>ECU11g0370 [K] KOG0215 RNA polymerase III second largest subunit
Length = 1110
Score = 1122 bits (2901), Expect = 0.0
Identities = 589/1135 (51%), Positives = 788/1135 (68%), Gaps = 66/1135 (5%)
Query: 39 EDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVG 98
+ + L+ F KGLV+QH++S++YFVD ++K +++AN+++ SD+D FYLKY+DIRV
Sbjct: 4 DQRLELIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVA 63
Query: 99 YKHNGNKAIMTP--PHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNK 156
+ P ECRLRD+TYS I+VDIEY R R I++ RDV IG+MP+MLRS++
Sbjct: 64 MPSVEENMVNYNVFPIECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSSR 123
Query: 157 CIL--------DGAAEND--MAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEAD 206
C L +G D + + ECPLD GGYFIV G E+V+L+QEQLSKNRII+E+
Sbjct: 124 CHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVVLIQEQLSKNRIIIESG 183
Query: 207 EKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQ 266
K + ASVTSST E KSKT V T++D YLK++ +EEVP+V+++KA G+V D E+ +
Sbjct: 184 PKG--LFASVTSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLVQDREVAE 241
Query: 267 LVCGNDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQEGIEAIATT 326
V Y +I + E I+T++QAL +I + +K + + + ++E + ++
Sbjct: 242 CV---GKEYFEIMVPSFGECMSKGIFTREQALLYISSYIKL--KPEDNRIEEVLTVLSEK 296
Query: 327 VIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFED 386
V+ ++ +E D R+K +YIA+M RR+ N DD+D+VGNKR ELAGQL+S+LFED
Sbjct: 297 VLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILFED 356
Query: 387 LFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRAISTGNWSLKRFKME 446
FK+FN + K +IDK+L K +RA+ +DAL +N+ +N IT+ + RAISTGNW+LKRF+ME
Sbjct: 357 TFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFRME 416
Query: 447 RAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGL 506
R+GVTHVLSR SYISALGMMT+I+S FEK+RKVSGPR+L S +GMLC DTPEGE+CGL
Sbjct: 417 RSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGL 476
Query: 507 VKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLN--YGVYLNGTIIGTTRFP 564
VKNLAL+ ITT+ + +PI Y LGV DI+ + + IH + V+LNG IIG T
Sbjct: 477 VKNLALLAEITTNSDTKPILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNRA 536
Query: 565 TKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTA---- 620
V QF+ RR G +F+SIY T ++ +HIA+D GR+CRPLII+ + + T
Sbjct: 537 DFLVEQFKLHRRKGLVGKFVSIYKVTVERVIHIASDNGRVCRPLIIIDKNRINQTIISNQ 596
Query: 621 --DHLRSLL--------AGKLQFDDFLKL---------GLVEYLDVNEENDSFIALYEKD 661
+ L++L +GK FD +LK G +EYLDVNEEND +AL +D
Sbjct: 597 MDECLKALNISEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPED 656
Query: 662 LSENITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLL 721
+ E THLEI F +LG VAGL+P+PHHNQSPRNTYQCAMGKQAIG I+ N KR D+++
Sbjct: 657 IGEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVI 716
Query: 722 YLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRC 781
+ Y +PMV TK ++LI+Y+++PAGQNA VAVMSYSGYDIEDALVLNK S++RG R
Sbjct: 717 LQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRV 776
Query: 782 ETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNK 841
E + TT+LK++ N D++ P + L DGLG+ G V G +YVNK
Sbjct: 777 EVYKTTTTLLKKHSNGMSDVLW---------PNPKESVLDEDGLGKPGKMVRDGTVYVNK 827
Query: 842 SVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPEL 901
P + + YK T V+R +P++ID+++++ S DQ LIK +LRQ R PE+
Sbjct: 828 MSPVDGT----------YKFTGKVHRG-DPAYIDKILITKSQ-DQVLIKTMLRQTRVPEI 875
Query: 902 GDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGV 961
GDKFSSRHGQKGV G++V+QED+PFNDQG+VPDIIMNPHGFPSRMTVGK++ELISGKAGV
Sbjct: 876 GDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKIVELISGKAGV 935
Query: 962 LNGTLEYGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLK 1021
L G + T F + +E ++L+ +GF+YSGKD SG TG L AYIFFGP++YQ+LK
Sbjct: 936 LEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLAAYIFFGPVFYQRLK 995
Query: 1022 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSD 1081
HMV DK+H RARGPRA+LTRQPTEGRS+DGGL+LGEMERDC+I YGAS L+ ERLM SSD
Sbjct: 996 HMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMTSSD 1055
Query: 1082 AFEVDVCEKCGLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKL 1136
FE VC CG++ + G C +CK + VK+ +PYA KLLFQEL++MNI PRL +
Sbjct: 1056 VFEAYVCRSCGVLAFKGCCVACKGTK-PVKVKMPYACKLLFQELMSMNILPRLHI 1109
>ECU10g0250 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1141
Score = 739 bits (1907), Expect = 0.0
Identities = 419/1142 (36%), Positives = 651/1142 (56%), Gaps = 52/1142 (4%)
Query: 37 TAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYL---KYI 93
T E W+++ +F + KGLV+Q LDSF+ FV ++++I + VI+ P + K I
Sbjct: 6 TKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQKRI 65
Query: 94 DIRVG---------YKHNGNKAIMTPPHECRLRDMTYSTPIFVDI--EYTRGRSIV---L 139
+R G Y + + I P+E R+RD+TY++P+F+D+ E +V
Sbjct: 66 AVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVVDKHK 125
Query: 140 HRDVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKN 199
+ V G +P+MLRS+ C+L G + D+ L ECP D GGYFIVNG+EKVI+ QE+++ N
Sbjct: 126 YSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASN 185
Query: 200 RIIV-EADEKKNIVQASVTSSTHERKSKT------YVVTKNDKIYLKHNSIAEEVPIVVV 252
+ V + + + S E+ S+ + I + + ++VP+ V+
Sbjct: 186 TVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVL 245
Query: 253 LKACGVVSDLEIMQLVCGNDSSYQDIFAVNLEEAAELKIYTQQQ--ALEFIGTKVKTVRR 310
+A G +SD EI+ + D +++F + L+E+ E Q Q AL++IG + +
Sbjct: 246 YRALGFLSDKEIIDHILYEDD--EEMFEL-LKESIEEGTVVQDQNVALDYIGKRSAPIGT 302
Query: 311 QKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGN 370
+ + + +A V+ H+ + +KA +I + +R+++ + DDRD+ G
Sbjct: 303 PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362
Query: 371 KRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMN 430
KR++L+G L++ LF LFKK D ++ K ++ + + + ++ IT G
Sbjct: 363 KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFN-----IALGLKASIITQGFR 417
Query: 431 RAISTGNWSLKRFKME-RAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQ 489
A++TGNW + M+ RAGV VL+R +++S L + R+++ EK K++ PR L +
Sbjct: 418 YALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTH 477
Query: 490 FGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLNY 549
+GM+C ++TPEG+ACGLVKNL+LM +I+ P+ GVE + I ++ +
Sbjct: 478 WGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAAT 537
Query: 550 GVYLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLI 609
+++NG +G P + + LRR+ + +SI + +K + + +D GR CRPL+
Sbjct: 538 KIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLL 597
Query: 610 IVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEK--------- 660
+V + + +TA+ +R L G++++D+ + G +E+LDV EE S IA+ K
Sbjct: 598 VVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNS 657
Query: 661 -DLSENITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDT 719
D+S + TH EI +LG A IP+P HNQSPRNTYQ AMGKQA+G A N R+DT
Sbjct: 658 SDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDT 717
Query: 720 LLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFG 779
L ++ YPQ+P+V TK++E + + +LP+GQNA VA+ YSGY+ ED++++N+++IDRG
Sbjct: 718 LSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLF 777
Query: 780 RCETRRKNTTVLKRY-PNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIY 838
R R T P ++ R + L DGL G +V +
Sbjct: 778 RSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVL 837
Query: 839 VNKSVPTNASDSILTQTQAQ-YKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNR 897
+ K P + + YK++ R E +D V+++ D + KV +R R
Sbjct: 838 IGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVIVTNKDGYK-FSKVKVRSGR 896
Query: 898 RPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISG 957
P++GDKF+SRH QKG GI ++QED+PF +G+VPDII+NPH PSRMT+G +IE + G
Sbjct: 897 IPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLG 956
Query: 958 KAGVLNGTLEYGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYY 1017
K ++G T F G ++ +S L GF G +++Y+G+TG L+A +FFGP YY
Sbjct: 957 KVSAMSGEEGDATPFSGVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYY 1016
Query: 1018 QKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLM 1077
Q+LKHMV DK+HARARGP +LTRQP EGRSRDGGLR GEMERDC+I++GAS L ERLM
Sbjct: 1017 QRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLM 1076
Query: 1078 LSSDAFEVDVCEKCGLMGYSG----WCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPR 1133
SDA+ VC+ CGL+ G C C +V + IPYA KLL QEL+ MNIAPR
Sbjct: 1077 DVSDAYSCYVCDFCGLLAMGGSKVNECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPR 1136
Query: 1134 LK 1135
++
Sbjct: 1137 IR 1138
>CE01162 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1193
Score = 724 bits (1868), Expect = 0.0
Identities = 429/1168 (36%), Positives = 673/1168 (56%), Gaps = 76/1168 (6%)
Query: 32 TDEINTA---EDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIK---------ANEV 79
+DEI+ E W ++ A+ KGLV+Q LDSF+ FV +++++I++ N+
Sbjct: 21 SDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQH 80
Query: 80 ILSDVD--PEFYLKYIDIRVGYKHNGNK---AIMTPPHECRLRDMTYSTPIFVDIE--YT 132
+ +D++ +F LK+ I + + K + P+E RLR++TY++P++VDI T
Sbjct: 81 LGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVT 140
Query: 133 RGRSIV--LHRDVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVI 190
R S ++ V +G++P+MLRS+ C+L + D+ +LNECPLDPGGYF++NG+EKV+
Sbjct: 141 RDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVL 200
Query: 191 LVQEQLSKNRIIV-EADEKKNIVQASVTSSTHERKSKTYVVTKN---------------D 234
+ QE+++ N + V + K + S T + N
Sbjct: 201 IAQEKMATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQ 260
Query: 235 KIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQLVCG--NDSSYQDIFAVNLEEAAELKIY 292
+I I +E+PI++V +A G VSD +I+ + ND ++ +L+EA I
Sbjct: 261 RIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FVIQ 318
Query: 293 TQQQALEFIGT---KVKTVRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMT 349
Q AL FIG K R Q++ +E ++ ++ H+ V +KA +I M
Sbjct: 319 EQNVALNFIGARGAKPGVTREQRIKYAREILQK---ELLPHVGVSEHCETKKAFFIGYMV 375
Query: 350 RRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRA 409
R+++A + +DDRD++GNKRL+LAG L++ LF LF+ + + K + K +
Sbjct: 376 HRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKND-- 433
Query: 410 EMYDALLTINVHSNNITTGMNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALGMMTR 468
D L + V ++ IT G+ +++TGNW K+ RAGV+ VL+RL+Y + L + R
Sbjct: 434 ---DFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRR 490
Query: 469 ISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRI 528
+S + K++ PR L +Q+GM+C ++TPEG+A GLVKNLALM +I+ EPI
Sbjct: 491 ANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEF 550
Query: 529 CYLLGVEDISLIDSASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGR--ASEFISI 586
+E++ + ++I +++NG +G R P + ++ + LRR SE +S+
Sbjct: 551 LEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSE-VSM 609
Query: 587 YTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSLL-----AGKLQFDDFLKLGL 641
+ + + I TD GR+CRPL+IV N + ++ H+ L A K + D + G+
Sbjct: 610 VRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGV 669
Query: 642 VEYLDVNEENDSFIALYEKDLS-----ENITHLEIESFTVLGAVAGLIPYPHHNQSPRNT 696
VE +D EE S IA+ +DL + TH EI +LG A +IP+P HNQSPRNT
Sbjct: 670 VELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNT 729
Query: 697 YQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVM 756
YQ AMGKQA+G N R+DTL +++ YPQ+P+V T+++E + +++LPAG NA VA++
Sbjct: 730 YQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAIL 789
Query: 757 SYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDE-NGEPIW 815
SYSGY+ ED++++N ++IDRG R R N +++I ++ +G
Sbjct: 790 SYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHS 849
Query: 816 QHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQY--KETPVVYRAPEPSH 873
+ L DG+ GM+V + + K+V D L + +Y ++ R+ E
Sbjct: 850 LYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGI 909
Query: 874 IDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVP 933
+DQVM+S++ + +K+ +R R P++GDKF+SRHGQKG GI+ +QED+PF +G+ P
Sbjct: 910 VDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTP 969
Query: 934 DIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGS-KLEDMSKILVDNGFNYS 992
DII+NPH PSRMT+G +IE + GK G + T F + ++ +S +L + G++
Sbjct: 970 DIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLR 1029
Query: 993 GKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGG 1052
G +++Y+G TG+ L IFFGP YYQ+LKHMV DK+H+RARGP ++ RQP EGR+RDGG
Sbjct: 1030 GNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGG 1089
Query: 1053 LRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGW------CTSCKTA 1106
LR GEMERDC I++GA+Q L ERL SD + V VC CGL+ + C +C+
Sbjct: 1090 LRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNK 1149
Query: 1107 EHVVKMTIPYAAKLLFQELLAMNIAPRL 1134
V + IPYA KLLFQEL++M+IAPRL
Sbjct: 1150 TQVSAVRIPYACKLLFQELMSMSIAPRL 1177
>YOR151c [K] KOG0214 RNA polymerase II second largest subunit
Length = 1224
Score = 723 bits (1866), Expect = 0.0
Identities = 437/1197 (36%), Positives = 661/1197 (54%), Gaps = 105/1197 (8%)
Query: 37 TAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIR 96
TAED W ++ AF + KGLV Q LDSFN FVD L+ II + ++ + + + +I
Sbjct: 26 TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNIS 85
Query: 97 VGYKHNGNKAIMTPP--------------HECRLRDMTYSTPIFVDIEYTRGRSI-VLHR 141
Y+ + K +T P E RLR++TYS+ +FVD++ +I V R
Sbjct: 86 RKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGR 145
Query: 142 DVE------------------IGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIV 183
+++ IGR+PIMLRS C L A E+D+ KL ECP D GGYFI+
Sbjct: 146 ELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFII 205
Query: 184 NGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNS- 242
NG+EKV++ QE+ + N + V + + + K ++ T K+Y + S
Sbjct: 206 NGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSS 265
Query: 243 ----------IAEEVPIVVVLKACGVVSDLEIMQLVCGNDSSYQDIFAVNLEEAAELKIY 292
I +++PIV++ +A G++ D EI++ +C + + +Q + + I
Sbjct: 266 ARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQ 325
Query: 293 TQQQALEFIGTKVKTVRRQKLSILQEGIEAIATTVIAHLT-VEALDFREKALYIAMMTRR 351
++ AL+FIG + + +K +Q + + + H+T +E + R KA ++ M R
Sbjct: 326 DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR-KAFFLGYMINR 384
Query: 352 VVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEM 411
+++ + K DDRD+ G KRL+LAG L++ LF+ LFKK D + + ++ E
Sbjct: 385 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE-----EA 439
Query: 412 YDALLTINVHSNNITTGMNRAISTGNWSLKRFKME-RAGVTHVLSRLSYISALGMMTRIS 470
+D + + +++ IT+G+ A++TGNW ++ M RAGV+ VL+R +Y S L + R +
Sbjct: 440 HDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 499
Query: 471 SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICY 530
+ + K++ PR L + +G++C ++TPEG+ACGLVKNL+LM+ I+ + PI
Sbjct: 500 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLS 559
Query: 531 LLGVEDISLIDSASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNT 590
G+E + V++NG G R P + + R LRR G + +S+ +
Sbjct: 560 EWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDI 619
Query: 591 HQKAVHIATDGGRICRPLIIVSNGQS------SVTADHLRSLLAGKLQ-----FDD---- 635
+K + I TD GR+ RPL IV + +S V H+ L+A + Q F+D
Sbjct: 620 REKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEY 679
Query: 636 ----FLKLGLVEYLDVNEENDSFIALYEKDLS------EN------------------IT 667
L GLVEY+D EE IA+ +DL EN T
Sbjct: 680 TWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFT 739
Query: 668 HLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYP 727
H EI +LG A +IP+P HNQSPRNTYQ AMGKQA+G N R+DT+ ++ YP
Sbjct: 740 HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYP 799
Query: 728 QQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKN 787
Q+P+ T+ +E + + +LPAGQNA VA+ YSGY+ ED++++N++SIDRG R R
Sbjct: 800 QKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY 859
Query: 788 TTVLKRYP-NHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTN 846
K+Y + T+ R + + L DGL G++V + + K+ P +
Sbjct: 860 MDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPIS 919
Query: 847 ASDSILTQTQAQY--KETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDK 904
+ L Q A + ++ R+ E +DQV+++ + + +KV +R + P++GDK
Sbjct: 920 PDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDK 979
Query: 905 FSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNG 964
F+SRHGQKG GI ++ED+PF +G+VPD+I+NPH PSRMTV +IE + K L+G
Sbjct: 980 FASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSG 1039
Query: 965 TLEYGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMV 1024
+ F +E +SK+L ++G+ G +++Y+G TG+ L A IFFGP YYQ+L+HMV
Sbjct: 1040 NEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMV 1099
Query: 1025 LDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFE 1084
DK+HARARGP VLTRQP EGRSRDGGLR GEMERDC+IA+GA+ L ERLM +SDAF
Sbjct: 1100 DDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFR 1159
Query: 1085 VDVCEKCGLMGYSG-------WCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRL 1134
V +C CGLM C C + ++ IPYAAKLLFQEL+AMNI PRL
Sbjct: 1160 VHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216
>At4g21710 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1188
Score = 719 bits (1856), Expect = 0.0
Identities = 430/1176 (36%), Positives = 642/1176 (54%), Gaps = 91/1176 (7%)
Query: 33 DEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPE----- 87
DE T ED W ++ A+ + KGLV+Q LDSF+ F+ +++I+ + I ++ PE
Sbjct: 18 DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADI--EIRPESQHNP 75
Query: 88 --------------FYLKYIDIRVGYKHNGNKAIMTPPHECRLRDMTYSTPIFVDIEYT- 132
F Y+ + + +G A + P RLR++TYS P++VD+
Sbjct: 76 GHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPK-AARLRNLTYSAPLYVDVTKRV 134
Query: 133 -----RGRSIVLHRD---VEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVN 184
G + +D V IG++PIMLRS+ C L +E D+ +L ECP D GGYFI+N
Sbjct: 135 IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIIN 194
Query: 185 GTEKVILVQEQLSKNRIIVEADEKKN----IVQASVTSSTHERKSKTYVVTKNDKIYLKH 240
G+EKV++ QE++S N + V + N + + + R T V + K
Sbjct: 195 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKG 254
Query: 241 NS-----------IAEEVPIVVVLKACGVVSDLEIMQLVCGN--DSSYQDIFAVNLEEAA 287
S I E+PI++V +A G V+D +I++ +C + D+ ++ +LEEA
Sbjct: 255 GSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA- 313
Query: 288 ELKIYTQQQALEFIGTKVKTVRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAM 347
I Q AL++IG + TV K ++ + + ++ H+ + +KA Y
Sbjct: 314 -FVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGY 372
Query: 348 MTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPN 407
+ R+++ + DDRD+ GNKRL+LAG L+ LF LF+K D ++ + K +
Sbjct: 373 IIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 432
Query: 408 RAEMYDALLTINVHSNNITTGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMT 467
+ A + + IT+G+ +++TGNW RAGV+ VL+RL+Y S L +
Sbjct: 433 EVNLQFA-----IKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLR 487
Query: 468 RISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKR 527
R++S + K++ PR L SQ+GM+C ++TPEG+ACGLVKNLALM +IT PI
Sbjct: 488 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 547
Query: 528 ICYLLGVEDISLIDSASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIY 587
G E+ I + I +++NG +G R P V R LRR + + +
Sbjct: 548 FLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVV 607
Query: 588 TNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDD----FLKLGLVE 643
+ K + I TD GR RPL IV N + + + +L + +D + G +E
Sbjct: 608 RDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIE 667
Query: 644 YLDVNEENDSFIALYEKDL-----------SENITHLEIESFTVLGAVAGLIPYPHHNQS 692
Y+D EE + I++ DL +EN TH EI +LG A +IP+P HNQS
Sbjct: 668 YIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQS 727
Query: 693 PRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNAT 752
PRNTYQ AMGKQA+G N R+DTL Y++ YPQ+P+V T+ +E + + +LPAG NA
Sbjct: 728 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAI 787
Query: 753 VAVMSYSGYDIEDALVLNKASIDRGFGRC--------ETRRKNTTVLKRYPNHTQDIIGG 804
VA+ YSGY+ ED++++N++SIDRGF R E ++ T V + + + G
Sbjct: 788 VAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMG 847
Query: 805 MRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQYKETPV 864
MR + L DGL G +V + + K+ P + ++ ++ ++ +
Sbjct: 848 MRHGS-------YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSI 900
Query: 865 VYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDL 924
R E +DQV+++ + + +KV +R R P++GDKFSSRHGQKG G+ QED+
Sbjct: 901 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 960
Query: 925 PFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKIL 984
P+ +GV PDII+NPH PSRMT+G++IE I GK G T F ++++SK L
Sbjct: 961 PWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1020
Query: 985 VDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPT 1044
G+ G + +Y+G TG L A IF GP YYQ+LKHMV DK+H+R RGP +LTRQP
Sbjct: 1021 HKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1080
Query: 1045 EGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGW----- 1099
EGRSRDGGLR GEMERDC+IA+GA+ L ERL SDA+ V VCE CGL+ +
Sbjct: 1081 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSF 1140
Query: 1100 -CTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRL 1134
C CK +V++ IPYA KLLFQEL++M IAPR+
Sbjct: 1141 ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176
>Hs4505941 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1174
Score = 718 bits (1854), Expect = 0.0
Identities = 419/1161 (36%), Positives = 654/1161 (56%), Gaps = 84/1161 (7%)
Query: 42 WNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVD-----------PEFYL 90
W ++ ++ KGLV+Q LDSF+ F+ + +++I++ I + P + L
Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLL 86
Query: 91 KYIDIRVG----YKHNGNKAIMTPPHECRLRDMTYSTPIFVDIEYT-----RGRSIVLHR 141
K+ I + ++ +G + M P +E RLR++TYS P++VDI T + H+
Sbjct: 87 KFEQIYLSKPTHWERDGAPSPMMP-NEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQ 145
Query: 142 DVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 201
IG++PIMLRS C+L+G + D+ +LNECPLDPGGYFI+NG+EKV++ QE+++ N +
Sbjct: 146 KTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 205
Query: 202 IVEADEKKNIVQASVTSSTHERKSK---TYVVTK-------------NDKIYLKHNSIAE 245
V A + S E S+ T V+ +I I +
Sbjct: 206 YVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQ 265
Query: 246 EVPIVVVLKACGVVSDLEIMQLVCGN--DSSYQDIFAVNLEEAAELKIYTQQQALEFIGT 303
EVPI++V +A G VSD +I++ + + D ++ +L+EA I Q AL FIG+
Sbjct: 266 EVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEA--FVIQEQNVALNFIGS 323
Query: 304 KVKTVRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVD 363
+ K ++ E + ++ H+ V +KA ++ M R+++A + +D
Sbjct: 324 RGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELD 383
Query: 364 DRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSN 423
DRD+ GNKRL+LAG L++ LF +FK + + K + + D L + + +
Sbjct: 384 DRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK-----DFNLELAIKTR 438
Query: 424 NITTGMNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGP 482
I+ G+ +++TGNW K+ RAGV+ VL+RL++ S L + R++S + K++ P
Sbjct: 439 IISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKP 498
Query: 483 RALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDS 542
R L + +GM+C ++TPEG A GLVKNLALM +I+ + PI +E++ I
Sbjct: 499 RQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISP 558
Query: 543 ASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGR--ASEFISIYTNTHQKAVHIATD 600
A+I +++NG +G + P + ++ R LRR SE +S+ + ++ + I TD
Sbjct: 559 AAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE-VSMIRDIREREIRIYTD 617
Query: 601 GGRICRPLIIVSNGQSSVTADHLRSLLA---GKLQFDDFLKLGLVEYLDVNEENDSFIAL 657
GRICRPL+IV + + H+ L + D + G+VEY+D EE +A+
Sbjct: 618 AGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM 677
Query: 658 YEKDLSEN-------ITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIA 710
DL E TH EI +LG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 678 TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 737
Query: 711 YNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLN 770
N R+DTL +++ YPQ+P+V T+++E + + +LPAG N+ VA+ SY+GY+ ED++++N
Sbjct: 738 TNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMN 797
Query: 771 KASIDRGFGRC--------ETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGP 822
++++DRGF R + +K + + T++ GMR + L
Sbjct: 798 RSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAI-------YDKLDD 850
Query: 823 DGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQY--KETPVVYRAPEPSHIDQVMMS 880
DGL G++V + + K+V ++ L T +Y ++ R E +DQVM++
Sbjct: 851 DGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVT 910
Query: 881 VSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPH 940
++ K+ +R R P++GDKF+SRHGQKG CGI +QED+PF +G+ PDII+NPH
Sbjct: 911 LNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH 970
Query: 941 GFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGS-KLEDMSKILVDNGFNYSGKDMLYS 999
PSRMT+G +IE + GK G + T F + ++ +S +L D G++ G ++LY+
Sbjct: 971 AIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYN 1030
Query: 1000 GITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1059
G TG + + IF GP YYQ+LKHMV DK+H+RARGP +L RQP EGRSRDGGLR GEME
Sbjct: 1031 GFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEME 1090
Query: 1060 RDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGW------CTSCKTAEHVVKMT 1113
RDC IA+GA+Q L ERL +SD ++V VC CG+M + C C+ + +
Sbjct: 1091 RDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVR 1150
Query: 1114 IPYAAKLLFQELLAMNIAPRL 1134
+PYA KLLFQEL++M+IAPR+
Sbjct: 1151 MPYACKLLFQELMSMSIAPRM 1171
>7299847 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1176
Score = 708 bits (1828), Expect = 0.0
Identities = 414/1155 (35%), Positives = 648/1155 (55%), Gaps = 71/1155 (6%)
Query: 42 WNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVD-----------PEFYL 90
W ++ A+ KGLV+Q LDSF+ F+ + +++I++ + I + P F L
Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87
Query: 91 KYIDIRVG----YKHNGNKAIMTPPHECRLRDMTYSTPIFVDIEYTRGRSIV-----LHR 141
K+ I + ++ +G+ + M P +E RLR++TYS P++VDI T+ + H+
Sbjct: 88 KFEQIYLSKPTHWEKDGSPSPMMP-NEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQ 146
Query: 142 DVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 201
IG++PIMLRS C+L + D+ +LNECPLDPGGYFI+NG+EKV++ QE+++ N +
Sbjct: 147 KTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 206
Query: 202 IV-EADEKKNIVQASVTSSTHERKSKTYVVTKN---------------DKIYLKHNSIAE 245
V + K + + S T + N +I I +
Sbjct: 207 YVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQ 266
Query: 246 EVPIVVVLKACGVVSDLEIMQLVCGN--DSSYQDIFAVNLEEAAELKIYTQQQALEFIGT 303
E+PI++V +A G V+D +I++ + + D ++ +L+EA + Q AL FIG
Sbjct: 267 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGA 324
Query: 304 KVKTVRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVD 363
+ K ++ E + ++ H+ V +KA ++ M R+++A + +D
Sbjct: 325 RGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 384
Query: 364 DRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSN 423
DRD+ GNKRL+LAG L++ LF LFK + + K + + D L + + +N
Sbjct: 385 DRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGK-----DFNLELAIKTN 439
Query: 424 NITTGMNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGP 482
IT G+ +++TGNW K+ RAGV+ VL+RL++ S L + R++S + K++ P
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 483 RALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDS 542
R L + +GMLC ++TPEG A GLVKNLALM +I+ + PI +E++ I
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 559
Query: 543 ASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGR--ASEFISIYTNTHQKAVHIATD 600
++I +++NG +G R P + ++ R LRR SE +S+ + + + I TD
Sbjct: 560 SAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE-VSMIRDIRDREIRIYTD 618
Query: 601 GGRICRPLIIVSNGQSSVTADHLRSLLA---GKLQFDDFLKLGLVEYLDVNEENDSFIAL 657
GRICRPL+IV NG + H+ L + + G+VEY+D EE IA+
Sbjct: 619 AGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
Query: 658 YEKDLSEN--------ITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAI 709
DL ++ TH EI +LG A +IP+P HNQSPRNTYQ AMGKQA+G
Sbjct: 679 SPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 738
Query: 710 AYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVL 769
N R+DTL +++ YP +P+V T+++E + + +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 739 ITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 798
Query: 770 NKASIDRGFGRCETRRK-NTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEV 828
N ++++RGF R R + KR + ++ R G + L DG+
Sbjct: 799 NASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAP 858
Query: 829 GMKVESGQIYVNKSVPTNASDSILTQTQAQY--KETPVVYRAPEPSHIDQVMMSVSDNDQ 886
G++V + + K++ +D L ++ ++ R E +DQVM++++
Sbjct: 859 GIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGY 918
Query: 887 ALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRM 946
K+ +R R P++GDKF+SRHGQKG CGI +QED+ F +G+ PDII+NPH PSRM
Sbjct: 919 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRM 978
Query: 947 TVGKMIELISGKAGVLNGTLEYGTCFGGS-KLEDMSKILVDNGFNYSGKDMLYSGITGEC 1005
T+G +IE + GK G G + T F + ++ +S L + G++ G +++Y+G TG
Sbjct: 979 TIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRK 1038
Query: 1006 LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 1065
+ A +F GP YYQ+LKHMV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I+
Sbjct: 1039 INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS 1098
Query: 1066 YGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGW------CTSCKTAEHVVKMTIPYAAK 1119
+GA+Q L ERL SD + V +C CGL+ + C CK + ++ +PYAAK
Sbjct: 1099 HGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAK 1158
Query: 1120 LLFQELLAMNIAPRL 1134
LLFQEL++MNIAPRL
Sbjct: 1159 LLFQELMSMNIAPRL 1173
>At3g18090 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1038
Score = 468 bits (1203), Expect = e-131
Identities = 335/1076 (31%), Positives = 527/1076 (48%), Gaps = 108/1076 (10%)
Query: 114 CRLRDMTYSTPIFVDIEYTRGRSIVLHR--------DVEIGRMPIMLRSNKCILDGAAEN 165
CRL++MTYS I V+ + G+ + + D+ IG +P+M++S C +
Sbjct: 3 CRLQNMTYSARIKVNAQVETGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKTSEKGKE 62
Query: 166 DMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVE---------ADEKKN--IVQA 214
+ K N C D GGYF++ G EKV + QEQ+ R+ + ++ K+N IV+
Sbjct: 63 NCKKGN-CAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSFRSETKRNRFIVRL 121
Query: 215 SVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQLVC--GND 272
S + K V+T +Y ++ E+P+ ++ A GV SD E M L+ G+D
Sbjct: 122 SENEKAEDYKIMEKVLT----VYF----LSTEIPVWLLFFALGVSSDKEAMDLIAFDGDD 173
Query: 273 SSYQDIFAVNLEEAAEL--KIYTQQQALEFIGTKVKTVRRQKLSILQEGIEAIATTVIAH 330
+S + ++ EA + AL ++ ++K+ + + + + +
Sbjct: 174 ASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPCLQG 233
Query: 331 LTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKK 390
L ++KA ++ M + ++ A + ++RD NKR+ELAG+L+
Sbjct: 234 L-------KKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAH 286
Query: 391 FNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRAISTGNWSLKRFKMER-AG 449
+ K L + + L +V IT G+NRA STG WS KMER +G
Sbjct: 287 ARRKMTRAMQKQLSGDGDLKPIEHYLDASV----ITNGLNRAFSTGAWSHPFRKMERVSG 342
Query: 450 VTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKN 509
V L R + + L + R Q + KV R PS +G +C TP+GE CGLVKN
Sbjct: 343 VVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKN 402
Query: 510 LALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLNYGVYLNGTIIGTTRFPTKFVS 569
++L+ ++T E ++ + + G+E++ S + + V LNG +G FV
Sbjct: 403 MSLLGLVSTQGLESVVEML-FTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVG 461
Query: 570 QFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSLLAG 629
+ + RR + + + V I TD GR+ RPL++V N L+
Sbjct: 462 ELKSRRRQSE----LPLERDKDDNEVRIFTDAGRLLRPLLVVEN------LHKLKQDKPT 511
Query: 630 KLQFDDFLKLGLVEYLDVNEENDSFIALYEKDL---SENITHLEIESFTVLGAVAGLIPY 686
+ F L G++E + + EE D A K L +N TH E++ +LG ++P+
Sbjct: 512 QYPFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEPKNYTHCELDLSFLLGVSCAIVPF 571
Query: 687 PHHNQSPRNTYQCAMG-KQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKL 745
+H+ R YQ +QAIG + N R DTL + YPQ+P+ KT E ++ + L
Sbjct: 572 ANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVL 631
Query: 746 PAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGM 805
GQNA VAV + GY+ ED++V+NKAS++RG R E R + T+D
Sbjct: 632 FNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVD-----TKDSEKRK 686
Query: 806 RVDE------NGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQY 859
++DE I + +L DG +G + +G I + + + A SI +
Sbjct: 687 KMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSI------KL 740
Query: 860 KETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIV 919
K T E + +V++S +D + V LRQ R P LGDKFSS HGQKGV G +
Sbjct: 741 KHT-------ERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLE 793
Query: 920 KQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELI------------SGKAGVLNGTLE 967
+Q++ PF QG+VPDI++NPH FPSR T G+++E G +
Sbjct: 794 EQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTR 853
Query: 968 YGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1027
+ T F + ++++ L GF+ G + +Y+G +GE +++ IF GP +YQ+L HM +K
Sbjct: 854 HATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENK 913
Query: 1028 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDV 1087
+ R GP LTRQP R R GG+R GEMERDC+IA+GAS L ERL SD+ ++ +
Sbjct: 914 VKFRNTGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHI 973
Query: 1088 CEKC-------------GLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNI 1130
C KC G +C C +++HVV++ +PY AKLL QEL +M I
Sbjct: 974 CRKCKTYANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGI 1029
>Hs8922399 [K] KOG0215 RNA polymerase III second largest subunit
Length = 343
Score = 463 bits (1191), Expect = e-130
Identities = 224/328 (68%), Positives = 267/328 (81%), Gaps = 3/328 (0%)
Query: 812 EPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNAS---DSILTQTQAQYKETPVVYRA 868
+PIW+H+ L DG+ G KVE+ Q+ VNKS+PT + Q QYK+ P+ Y+
Sbjct: 11 KPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKG 70
Query: 869 PEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFND 928
S+I++VM+S + D LIK+LLRQ RRPE+GDKFSSRHGQKGVCG+IV QED+PF D
Sbjct: 71 ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD 130
Query: 929 QGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDNG 988
G+ PDIIMNPHGFPSRMTVGK+IEL++GKAGVL+G YGT FGGSK++D+ + LV +G
Sbjct: 131 SGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHG 190
Query: 989 FNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS 1048
+NY GKD + SGITGE L+AYI+FGP+YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS
Sbjct: 191 YNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRS 250
Query: 1049 RDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSGWCTSCKTAEH 1108
RDGGLRLGEMERDC+I YGAS LLLERLM+SSDAFEVDVC +CGL+GYSGWC CK++ H
Sbjct: 251 RDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGWCHYCKSSCH 310
Query: 1109 VVKMTIPYAAKLLFQELLAMNIAPRLKL 1136
V + IPYA KLLFQEL +MNI PRLKL
Sbjct: 311 VSSLRIPYACKLLFQELQSMNIIPRLKL 338
>At3g23780 [K] KOG0214 RNA polymerase II second largest subunit
Length = 946
Score = 416 bits (1070), Expect = e-116
Identities = 297/962 (30%), Positives = 475/962 (48%), Gaps = 79/962 (8%)
Query: 205 ADEKKN--IVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDL 262
++ K+N IV+ S + K + V+T +Y ++ E+P+ ++ A GV SD
Sbjct: 19 SENKRNRFIVRLSENEKAEDYKRREKVLT----VYF----LSTEIPVWLLFFALGVSSDK 70
Query: 263 EIMQLVC--GNDSSYQD--IFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQE 318
E M L+ G+D+S + I ++++ +A AL ++ ++K+ + + E
Sbjct: 71 EAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDE 130
Query: 319 GIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQ 378
+ +L ++KA ++ M + ++ + + ++RD NKR+ELAG+
Sbjct: 131 CLHL-------YLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGE 183
Query: 379 LMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITTGMNRAISTGNW 438
L+ + K L + + L +V IT G++RA STG W
Sbjct: 184 LLEREIRVHLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASV----ITNGLSRAFSTGAW 239
Query: 439 SLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSD 497
S KMER +GV L R + + L + R Q + KV R PS +G +C
Sbjct: 240 SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLS 299
Query: 498 TPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLNYGVYLNGTI 557
TP+GE CGLVKN++L+ ++T E ++++ + G+E++ + + V LNG
Sbjct: 300 TPDGENCGLVKNMSLLGLVSTQSLESVVEKL-FACGMEELMDDTCTPLFGKHKVLLNGDW 358
Query: 558 IGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSS 617
+G FV++ + RR + V I TD GR+ RPL++V N Q
Sbjct: 359 VGLCADSESFVAELKSRRRQSELPR----ERDKDDNEVRIFTDAGRLLRPLLVVENLQK- 413
Query: 618 VTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSEN---ITHLEIESF 674
L+ + FD L G++E + + EE D A K L + TH E++
Sbjct: 414 -----LKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLS 468
Query: 675 TVLGAVAGLIPYPHHNQSPRNTYQCAMG-KQAIGAIAYNQFKRIDTLLYLMIYPQQPMVK 733
+LG ++P+ +H+ R YQ +QAIG + N R DTL + YPQ+P+ K
Sbjct: 469 FLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFK 528
Query: 734 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKR 793
T E + + L GQNA VAV + GY+ ED++V+NKAS++RG R E R +
Sbjct: 529 TLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDA 588
Query: 794 YPNHTQDIIGGM-RVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSIL 852
+ + + + + + I + +L DG +G + +G I + + + A SI
Sbjct: 589 KDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSI- 647
Query: 853 TQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQK 912
+ K T E + +V++S +D + V LRQ R P LGDKFSS HGQK
Sbjct: 648 -----KLKHT-------ERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQK 695
Query: 913 GVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELI-----------SGKAGV 961
GV G + +Q++ PF QG+VPDI++NPH FPSR T G+++E G +
Sbjct: 696 GVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAA 755
Query: 962 LNGTLEYGTCFGGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLK 1021
+ T F + ++++ L GF+ G + +Y+G +GE +++ IF GP +YQ+L
Sbjct: 756 YTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLV 815
Query: 1022 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSD 1081
HM DK+ R GP LTRQP R R GG++ GEMERDC+IA+GAS L ERL SD
Sbjct: 816 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSD 875
Query: 1082 AFEVDVCEKC-------------GLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAM 1128
+ ++ +C KC G +C C +++HVV++ +PY AKLL QEL +M
Sbjct: 876 SSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSM 935
Query: 1129 NI 1130
I
Sbjct: 936 GI 937
>CE05629 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1127
Score = 406 bits (1043), Expect = e-112
Identities = 316/1111 (28%), Positives = 504/1111 (44%), Gaps = 147/1111 (13%)
Query: 111 PHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAENDMAKL 170
P ECR R +TY+ + V I+ S + ++ +G++PIMLRS C L G + ++
Sbjct: 70 PAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVA 129
Query: 171 NECPLDPGGYFIVNGTEKVILVQEQLSKN---RIIVEADEKKN-------IVQASVTSS- 219
E P++ GGYFIVNG+EKVI + +N II + ++K ++ SV +
Sbjct: 130 GEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENH 189
Query: 220 THERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEI---MQLVCGNDSSYQ 276
T + Y+ T ++ L+ VP++ ++KA +D I + D Y
Sbjct: 190 TAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYS 249
Query: 277 DIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQEGIEA----IATTVIAHLT 332
L + E +I Q+ A+ IG++ + +++ ++ +EA I V+ HL
Sbjct: 250 SCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLD 309
Query: 333 VEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFN 392
+ EK +A MT++++ + + D + ++G ++ L+ + +
Sbjct: 310 SD----EEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENII 365
Query: 393 NDFKANIDKVLKKPNRAEMYDALLTI--NVHSNNITTGMNRAISTGNWSLK--RFKMERA 448
+ ++ + + + A+L N IT GM ++TGN + + +
Sbjct: 366 GMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQES 425
Query: 449 GVTHVLSRLSYISALGMMTRIS-SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLV 507
G + + R++ + + I F + + R L+P +G +C TP+G CGL+
Sbjct: 426 GFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLL 485
Query: 508 KNLALMTHITTD-DEEEPIKRICYLLGVEDISLIDSASIHLN-YGVYLNGTIIGTTRFPT 565
++ I TD + + + LG+ + A Y V +NG +G T
Sbjct: 486 NHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPI-T 544
Query: 566 KFVSQFRCLRRTGRASEFISIYTN---------------THQKAVHIATDGGRICRPLII 610
K S R LR A + YT+ T ++I +D GR+ RP
Sbjct: 545 KAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRP--- 601
Query: 611 VSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENIT-HL 669
V N L + VE++ E+ + L ++ +T H
Sbjct: 602 VRN-----------------------LAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQ 638
Query: 670 EIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQ 729
E+ + LIP+P HNQSPRN YQC MGKQ +G + R D +Y + +PQQ
Sbjct: 639 ELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQ 698
Query: 730 PMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFG---------- 779
PM+K + E + D+ P G NA VAV+SY+GYD+EDA+ +NKAS RGF
Sbjct: 699 PMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERI 758
Query: 780 RCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYV 839
T R+ T+ R P + + +GPDGL G + ++Y
Sbjct: 759 NLVTERERKTIFYRNPRE------------------EIKTVGPDGLPIPGRRYFLDEVYY 800
Query: 840 NKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQV-MMSVSDNDQALIKVLL--RQN 896
V N + Y EP++ V ++ + D L+ R
Sbjct: 801 ---VTFNMETGDFRTHKFHY---------AEPAYCGLVRIVEQGEGDSGAKHALIQWRIE 848
Query: 897 RRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELIS 956
R P +GDKF+SRHGQKG+ + E LPF++ G+VPDII NPHGFPSRMT+G MIE ++
Sbjct: 849 RNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMA 908
Query: 957 GKAGVLNGTLEYGTCF----GGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFF 1012
GKA +G + F + + ++L G+NY G + YSG+ G ++ IFF
Sbjct: 909 GKAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFF 968
Query: 1013 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1072
G +YYQ+L+HM+ DK RA GP +T QP +GR + GG+R GEMERD +IA+G S +L
Sbjct: 969 GIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVL 1028
Query: 1073 LERLMLSSDAFEVDVCEKCG-----LMGYSGW---------------------CTSCKTA 1106
+RL+ SD C +CG LM C +C
Sbjct: 1029 QDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKD 1088
Query: 1107 EHVVKMTIPYAAKLLFQELLAMNIAPRLKLG 1137
+ V + +P + L EL AMN+ ++KLG
Sbjct: 1089 DQVFLLQVPRVFRYLTAELAAMNV--KIKLG 1117
>SPBP23A10.07 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1227
Score = 405 bits (1040), Expect = e-112
Identities = 316/1047 (30%), Positives = 497/1047 (47%), Gaps = 121/1047 (11%)
Query: 111 PHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAENDMAKL 170
P E R R TY + + + ++ E+G +PIM+RSN+C L+G + ++
Sbjct: 156 PAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAH 215
Query: 171 NECPLDPGGYFIVNGTEKVI---LVQEQLSKNRIIVEADEKKNIV--------------Q 213
E + GGYFIVNG EK+I ++ ++ II + + Q
Sbjct: 216 KEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQ 275
Query: 214 ASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQLVCGND- 272
+S+T++ H + + + + + N +P +++LKA SD EI + + G D
Sbjct: 276 SSLTNTLHYLNNGVTMF----RFHWRKNEYL--IPSMMILKALLETSDKEIFEGIVGKDL 329
Query: 273 --SSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVR--RQKLSILQEGIEAIATTVI 328
+ D + L +Y+Q + L+++G+K + V + L+ ++ G + V+
Sbjct: 330 GNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVL 389
Query: 329 AHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLF 388
HL + ++K + M R++ + D+ D ++ + L G L + ++
Sbjct: 390 VHLR----EAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKI 445
Query: 389 KKFNNDFKANID-KVLKKPNRAEMYDALLTINVHS---NNITTGMNRAISTGNW-SLKRF 443
+ + N +A I+ V + + D V S N+I T + +STGN S
Sbjct: 446 EDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGL 505
Query: 444 KMERA-GVTHVLSRLSYISALGMMTRIS-SQFEKSRKVSGPRALQPSQFGMLCTSDTPEG 501
+++A G T V +L++ L + F K + R L P +G +C TP+G
Sbjct: 506 DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDG 565
Query: 502 EACGLVKNLALMTHITTDDEE-EPIKRICYLLGVEDISLIDSASIHLNYG-VYLNGTIIG 559
CGL+ +LA I T + I + LGV+ S++ S +G V L+G I+G
Sbjct: 566 SPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHES---GWGCVQLDGKIVG 622
Query: 560 --TTRFPTKFVSQFRCLR-------RTGRASE-----------FISIYTNTHQKAVHIAT 599
T + R ++ R G A+E ++ N +++ +
Sbjct: 623 WCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFS 682
Query: 600 DGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVE--YLDVNEENDSFIAL 657
+ R+ RP+ +S G+ + LG E Y+D IA
Sbjct: 683 NPARMVRPVKHISTGELDM--------------------LGPFEQVYMD--------IAC 714
Query: 658 YEKDLSENI-THLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKR 716
+ K++ + TH+E VL VA + P+ NQSPRN YQC MGKQ +G R
Sbjct: 715 FPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYR 774
Query: 717 IDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDR 776
D LY + Q P+V+ K D P G NA VAV+SY+GYD+EDA++LNK++ +R
Sbjct: 775 TDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHER 834
Query: 777 GFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQH-QALGPDGLGEVGMKVESG 835
GFG + + L + + ++ P + Q L DGL +G+K+E G
Sbjct: 835 GFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDG 894
Query: 836 Q---IYVNKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMM---SVSDNDQALI 889
Y ++S N ++ Y EP +D+V + V D++ I
Sbjct: 895 DPIVAYYDESTGQNFIET---------------YHGTEPGFVDEVRLLGNDVGDSECQQI 939
Query: 890 KVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVG 949
V LR R P +GDKFSSRHGQKG+C D+PF + G+ PDII+NPH FPSRMT+G
Sbjct: 940 HVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIG 999
Query: 950 KMIELISGKAGVLNGTLEYGTCFGGSKLED----MSKILVDNGFNYSGKDMLYSGITGEC 1005
IE ++GKAG +G + T F S+ + + LV G+NY G + +YSGITG+
Sbjct: 1000 MFIESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQE 1059
Query: 1006 LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 1065
++A I+ G +YYQ+L+HMV DK R GP LTRQP +GR R GG+R GEMERD VI
Sbjct: 1060 MKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIG 1119
Query: 1066 YGASQLLLERLMLSSDAFEVDVCEKCG 1092
+G S L+ +RLM SD + VC CG
Sbjct: 1120 HGTSFLMQDRLMNCSDYAQSWVCRDCG 1146
>ECU03g0440 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1062
Score = 404 bits (1038), Expect = e-112
Identities = 327/1146 (28%), Positives = 514/1146 (44%), Gaps = 144/1146 (12%)
Query: 44 LLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVGYKHNG 103
+ P +++K K H++++N + ++ + A L + ++ I + + +
Sbjct: 8 IYPCRMELKDAAKAHIEAYNAIFNGNILDNLVAGVPPLVKGKTKIIVEEIHVAPPFLSDK 67
Query: 104 NKAIMTP---PHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNKCILD 160
+ + P ECR R +TY + V + V+ D G PIM+RS C L+
Sbjct: 68 DHISVDRRLLPRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLN 127
Query: 161 GAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSST 220
G + ++ E + GGYFI+NG ++ I +N I KK + S
Sbjct: 128 GIKNKN--EVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFKMRKKTSFFSDYMVSM 185
Query: 221 H--------ERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLKACGVVSDLEIMQLVCGND 272
Y N I + H P+V+VLKA +D E+ + G
Sbjct: 186 RCVGRDEIGHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQ 245
Query: 273 SSYQDIFAVNLEEA-AELKIYTQQQALEFIGTKVKTVRRQKLSILQEGIEAIATTVIAHL 331
AV+L + AE ++++ + L++IG++ + + S + E ++ V++HL
Sbjct: 246 R------AVHLLKCFAEHNVFSRTECLDYIGSRFSAILNFE-SKAEVAEEILSKYVVSHL 298
Query: 332 TVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKF 391
+ +K ++ + R++ +DN DD D N L Q++S D ++F
Sbjct: 299 SSNL----DKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEF 354
Query: 392 NNDFKANIDKVLKK-------------------PNRAEMYDALLTINVHSNNITTGMNRA 432
F K K + ++ S NI M
Sbjct: 355 MRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELF 414
Query: 433 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQF 490
+S+G+ +L ++ G + R+++ L ++ V+ R L+P +
Sbjct: 415 LSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVTSIRKLRPESW 474
Query: 491 GMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVEDISLIDSASIHLNYG 550
G LC TP+G CG++ ++A + + D++ I + GV + + +
Sbjct: 475 GFLCPVHTPDGAPCGVLLHMAKEAEVVSRDDDFNTD-ILFEFGV----VPSIRGVEMGIP 529
Query: 551 VYLNGTIIGTTRFP---TKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATDGGRICRP 607
V +NG ++G+T P T+ V ++R R G E + +V I + GR R
Sbjct: 530 VLVNGRVVGSTSSPSDLTRMVREYR--NRNGLMIEVVYTSEPKMFPSVCIFSSVGRFARK 587
Query: 608 LIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENIT 667
++ +LG E++ + E+ F+ + ++ + +
Sbjct: 588 VMN--------------------------RRLGSEEWIGIMEQ--VFLNIDTEEGAGDGD 619
Query: 668 HLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYP 727
+ EI+ +LG +AGLIPY HNQSPRN YQC M KQAIG A+N R D +Y + Y
Sbjct: 620 YYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYL 679
Query: 728 QQPMVKTKTIELI-DYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRK 786
Q P+V+T+ E++ DY P G N VAV+SY+ YD+EDALV+NK SIDRG +
Sbjct: 680 QSPIVRTEGYEMVKDY---PVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKT 736
Query: 787 NTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTN 846
L + T L VG +++
Sbjct: 737 EKVPLDKGYFFTY-------------------------LPSVGQRIQK------------ 759
Query: 847 ASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFS 906
D++ +E Y EP +D V + +D + +R R P +GDKFS
Sbjct: 760 -DDTLYRYVDQDGREYEKRYLGTEPGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFS 818
Query: 907 SRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTL 966
SRHGQKGVC + D+PF + G VPDII+NPH FPSRMT+G +IE I+GK G L+G
Sbjct: 819 SRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNE 878
Query: 967 EYGTCFGGSKL--------------EDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFF 1012
+ GT F S L E + L +GFNY G + +YSG+ G +A IF
Sbjct: 879 QDGTVFKKSFLLEQEEGDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFV 938
Query: 1013 GPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLL 1072
G +YYQ+LKHMV DK R +G TRQP GR + GG+R GEMERD +I++GAS LL
Sbjct: 939 GVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLL 998
Query: 1073 LERLMLSSDAFEVDVCEKCG--LMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNI 1130
+RL+ SSD+ + C C L +G C + V+M PY K L ELLAMNI
Sbjct: 999 QDRLLKSSDSTVFEYCGTCRSILFTNNGDCICGSSDLKAVEM--PYVFKYLCCELLAMNI 1056
Query: 1131 APRLKL 1136
++ L
Sbjct: 1057 KVQIDL 1062
>YPR010c [K] KOG0216 RNA polymerase I second largest subunit
Length = 1203
Score = 382 bits (981), Expect = e-105
Identities = 316/1036 (30%), Positives = 501/1036 (47%), Gaps = 104/1036 (10%)
Query: 111 PHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDV-EIGRMPIMLRSNKCILDGAAENDMAK 169
P E R R +Y + + ++++ +V + G +P+ML+SN+C L+ + ++ +
Sbjct: 123 PSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQ 182
Query: 170 LNECPLDPGGYFIVNGTEKVI---LVQEQLSKNRIIVEADEKKNIVQA----SVTSSTHE 222
E + GGYFIVNG EK+I +VQ + II + + + + S +
Sbjct: 183 HKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPD 242
Query: 223 RKSKTYVV--TKNDKIYLKHNSIAEE--VPIVVVLKACGVVSDLEIMQLVCGNDSSYQDI 278
+ S+T V+ + ++ + + E VP+V++LKA SD EI + GND +D
Sbjct: 243 QTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGND--VKDS 300
Query: 279 FAVNLEEAAEL----------KIYTQQQALEFIGTKVKTVRRQK--LSILQEGIEAIATT 326
F L + EL + + Q L+++G K + V + S L+ G E +
Sbjct: 301 F---LTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRI 357
Query: 327 VIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFED 386
V+ HL + ++K + M R++ + D+ D ++ + L G L ++ ++
Sbjct: 358 VLVHLGKDGS--QDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 387 LFKKFNNDFKANIDKVLKK------PNRAEMYDALLTINVHSNNITTGMNRAISTGNW-S 439
++ + A + + + ++ M L+ +N NI + M +STGN S
Sbjct: 416 KIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVN---ENIGSKMQYFLSTGNLVS 472
Query: 440 LKRFKMER-AGVTHVLSRLSY---ISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCT 495
+++ +G T V ++++ IS M+ R S F K + R L P +G LC
Sbjct: 473 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGS--FFAQLKTTTVRKLLPESWGFLCP 530
Query: 496 SDTPEGEACGLVKNLALMTHITTDDEE-EPIKRICYLLGVEDISLIDSASIHLNYGVYLN 554
TP+G CGL+ + A I+T + I I Y LGV S +A L V ++
Sbjct: 531 VHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAAGPSLCC-VQID 589
Query: 555 GTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQKAVHIATD--------GGRICR 606
G IIG Q + + T R Y K + D R
Sbjct: 590 GKIIGWVSH-----EQGKIIADTLR-------YWKVEGKTPGLPIDLEIGYVPPSTRGQY 637
Query: 607 PLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEENDSFIALYEKDLSENI 666
P + + G S + LR + L +D + G E + +N IA+ +++ N+
Sbjct: 638 PGLYLFGGHSRM----LRPVRYLPLDKEDIV--GPFEQVYMN------IAVTPQEIQNNV 685
Query: 667 -THLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMI 725
TH+E +L +A L P+ NQSPRN YQC MGKQ +G R D LY +
Sbjct: 686 HTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ 745
Query: 726 YPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRR 785
Q P+VK + D P G NA VAV+SY+GYD++DA+++NK++ +RGFG +
Sbjct: 746 TGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYK 805
Query: 786 KNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPT 845
L N I + P + L DGL +G VE G P
Sbjct: 806 TEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGD-------PI 858
Query: 846 NAS-DSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQ----ALIKVLLRQNRRPE 900
A D L +T+ + Y + EP++I++V + ++++ + + R R P+
Sbjct: 859 CAYFDDTLNKTKIK------TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQ 912
Query: 901 LGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAG 960
+GDKFSSRHGQKGVC D+PF++ G+ PDII+NPH FPSRMT+G +E ++GKAG
Sbjct: 913 IGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAG 972
Query: 961 VLNGTLEYGTCF----GGSKLEDMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIY 1016
L+G + T + + + + L G+NY G + +YSG TGE L+A I+ G +Y
Sbjct: 973 ALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVY 1032
Query: 1017 YQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERL 1076
YQ+L+HMV DK R+ GP LT QP +GR R GG+R+GEMERD +I +G S LL +RL
Sbjct: 1033 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRL 1092
Query: 1077 MLSSDAFEVDVCEKCG 1092
+ SSD + VC +CG
Sbjct: 1093 LNSSDYTQASVCRECG 1108
>At1g29940 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1114
Score = 380 bits (975), Expect = e-105
Identities = 319/1128 (28%), Positives = 513/1128 (45%), Gaps = 160/1128 (14%)
Query: 113 ECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAENDMAKLNE 172
+CR ++Y+ D+ + +V+ + G+ PIML S C L GA + K E
Sbjct: 39 DCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKE 98
Query: 173 CPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHERK---SKTYV 229
+ GGYFI+NG E+V R ++ K+N + + +S +RK S V
Sbjct: 99 STSEMGGYFILNGIERVF---------RCVIAP--KRNHPTSMIRNSFRDRKEGYSSKAV 147
Query: 230 VTK---------NDKIYLKHNSIAEE----------VPIVVVLKACGVVSDLEIMQ-LVC 269
VT+ K+Y N A +P+ +VLKA D EI + L C
Sbjct: 148 VTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNC 207
Query: 270 GNDSSY------------QDIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQ 317
Y ++ + L+E +L ++T++Q + +G + V
Sbjct: 208 CYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPV--------- 258
Query: 318 EGIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELA 376
++ +A V+ +L V + +K + + +++ +D + D+ D + N+ + +
Sbjct: 259 --LDGVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVP 316
Query: 377 GQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSN-----NITTGMNR 431
G ++++ ++ +++ K+ + L N +++L + N +I T +
Sbjct: 317 GHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIET 376
Query: 432 AISTGNWSLKRFK----MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRAL 485
+ TG +LK +RAG T RL+++ L + + F R + R L
Sbjct: 377 LLKTG--ALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTT-VRKL 433
Query: 486 QPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIKRICYLL-GVEDI----SL 539
P +G LC TP+G CGL+ ++ + IT+ D + I+ + V D+ +
Sbjct: 434 LPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGM 493
Query: 540 IDSASIHLNYG------VYLNGTIIGT--TRFPTKFVSQFRCLRRTGRASEFISIYTNTH 591
+ S + G V L+G ++GT + TK VS R L+ E S+
Sbjct: 494 VPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLK-----VEAPSVIPEDL 548
Query: 592 QKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEEN 651
+ ++ T G L + +S A +R + + D+ +G E + N N
Sbjct: 549 EVG-YVPTSMGGSYPGLYL-----ASCPARFIRPVKNISIPSDNIELIGPFEQV-ANPIN 601
Query: 652 DSFIALYEKDLSENITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAY 711
FI+ + TH EI ++ VA L P+ HNQSPRN YQC M KQ +
Sbjct: 602 IIFISTFPA------THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQ 655
Query: 712 NQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNK 771
R D +Y + PQ P+V+TKT D+ P G NA VAV++++G+D+EDA++LNK
Sbjct: 656 ALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNK 715
Query: 772 ASIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMK 831
+S++RG + + L + R N +H + DGL VG K
Sbjct: 716 SSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNKA---EHFRIDADGLPSVGQK 772
Query: 832 VESGQIYVNKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSV-SDNDQALIK 890
+ + Y + D + +T+ + + +P +D V + + S
Sbjct: 773 LYPDEPYCS------IYDEVTNKTRHMKR------KGTDPVIVDFVSVDMKSKKHPQRAN 820
Query: 891 VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFND-QGVVPDIIMNPHGFPSRMTVG 949
+ R R P +GDKFSSRHGQKGVC + D+PFN G+ PD+I+NPH FPSRMT+
Sbjct: 821 IRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIA 880
Query: 950 KMIELISGKAGVLNGTLEYGTCFGGSK--------------LEDMSKILVDNGFNYSGKD 995
++E I+ K G L+G T F + ++D+ +L + GFN+ G +
Sbjct: 881 MLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTE 940
Query: 996 MLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRL 1055
LYSG G L+ IF GP+YYQ+L+HMV DK R+ G LT QP +GR R GG+R
Sbjct: 941 TLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRF 1000
Query: 1056 GEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKCGLMGYSG----------------- 1098
GEMERD ++A+GAS LL +RL SSD DVC CG + S
Sbjct: 1001 GEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLP 1060
Query: 1099 --------WCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKLGD 1138
C SCKT++ + + +PY + L EL +MNI L+L D
Sbjct: 1061 PGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQLSD 1108
>7296211 [K] KOG0216 RNA polymerase I second largest subunit
Length = 1129
Score = 375 bits (963), Expect = e-103
Identities = 313/1071 (29%), Positives = 483/1071 (44%), Gaps = 144/1071 (13%)
Query: 142 DVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNR- 200
++++G +PIMLRS C L A +M K E + GG F++ G EK++ + +N
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 201 IIVEADEKKNIVQ-----ASVTSSTHERKSKT-----YVVTKNDKIYLKHNSIAEEVPIV 250
I V+ K+ Q + + E +S Y+ K H VP+
Sbjct: 190 ICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVC 249
Query: 251 VVLKACGVVSDLEIM-QLVCG--NDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKT 307
++LK +D EI +LV G +D Y L E +YT Q FIG +
Sbjct: 250 LILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRA 309
Query: 308 VRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDY 367
R ++ Q + + + + + +K I M +++ V++ D
Sbjct: 310 -RFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDS 368
Query: 368 VGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNNITT 427
+ + L G L + + + + + + K L P DAL+T V + +
Sbjct: 369 AMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSP------DALVTSAVMTQCMRQ 422
Query: 428 --GMNRAI----STGNWSLKRFK--MERAGVTHV---LSRLSYISALGMMTRISSQFEKS 476
G+ RAI +TGN + + M+ +G+ + ++R+ Y+S + R S + +
Sbjct: 423 AGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGS--YFTT 480
Query: 477 RKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLLGVED 536
+ + R L P +G +C TP+G CGL+ +L L I+ + + +K I
Sbjct: 481 MRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAI-------P 533
Query: 537 ISLIDSASIHLN---------YGVYLNGTIIGTTRFPT--KFVSQFRCLRRTGRASE--- 582
LID + L+ Y V+L+G +G K V + R + G +
Sbjct: 534 KHLIDMGMMPLSNRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMME 593
Query: 583 --FISIYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLG 640
FI N ++IAT R+ RP V N LK
Sbjct: 594 IGFIPFKKNGQFPGLYIATGPARMMRP---VWN-----------------------LKWK 627
Query: 641 LVEYLDVNEENDSFIALYEKDLSENIT-HLEIESFTVLGAVAGLIPYPHHNQSPRNTYQC 699
VEY+ E+ IA+ K++ + T HLE+ + +A LIP P +NQSPRN YQC
Sbjct: 628 RVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQC 687
Query: 700 AMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYS 759
MGKQ +G N K+ LY + P P+ + + I D G NA VAV+SY+
Sbjct: 688 QMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYT 747
Query: 760 GYDIEDALVLNKASIDRGFG-------RCETRRKNTTVLKRYPNHTQDIIGGMRVDENGE 812
GYD+EDA+++NKA+ +RGF + T K ++ R+P H ++I
Sbjct: 748 GYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHP-HMPELI---------- 796
Query: 813 PIWQHQALGPDGLGEVGMKVESGQ---IYVNKSVPTNASDSILTQTQAQYKETPVVYRAP 869
+ L DGL G K+ G Y + V T + KE +V
Sbjct: 797 -----KHLDTDGLPHPGSKLSYGSPLYCYFDGEVAT------YKVVKMDEKEDCIVESIR 845
Query: 870 EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQ 929
+ D + + ++ + LR R +GDKF+SR GQKG+C EDLPF +
Sbjct: 846 QLGSFDL-------SPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTES 898
Query: 930 GVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK----LEDMSKILV 985
G++PDI+ NPHGFPSRMT+ MIE ++GK ++G + T F S+ ++ K+L
Sbjct: 899 GLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLE 958
Query: 986 DNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTE 1045
G+NY G + LYSG+ G + A IFFG ++YQ+L+HMV DK R+ G T QP +
Sbjct: 959 AGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIK 1018
Query: 1046 GRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKC-------------- 1091
GR R GG+R GEMERD +I++GA+ LL +RL +SD VC KC
Sbjct: 1019 GRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRN 1078
Query: 1092 ---GLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIAPRLKLGDV 1139
GL C C V + IP++ K L EL ++NI R KL ++
Sbjct: 1079 ETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKLNEI 1129
>SPAC23G3.01 [K] KOG0214 RNA polymerase II second largest subunit
Length = 728
Score = 312 bits (799), Expect = 2e-84
Identities = 213/695 (30%), Positives = 356/695 (50%), Gaps = 74/695 (10%)
Query: 33 DEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKY 92
+E T ED W ++ +F + L +Q L SF+ FV +++I+ + + D +
Sbjct: 9 NETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQ 68
Query: 93 IDIRVGYKHNGNKAIMTPP--------------HECRLRDMTYSTPIFVD---------- 128
D+ Y+ N + ++ P E RLR++TYS+P++VD
Sbjct: 69 GDVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAAD 128
Query: 129 --IEYTRGRSIVLHRDVE-----IGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYF 181
+ +V D E IG++PIMLRS CIL+G +++++ LNECP D GGYF
Sbjct: 129 SNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYF 188
Query: 182 IVNGTEKVILVQEQLSKNRI-IVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKH 240
I+NG+EKVI+ QE+ + N + + + I + S ER S+ + + K+ ++
Sbjct: 189 IINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRL-ISSMQIKLMARN 247
Query: 241 NS------------IAEEVPIVVVLKACGVVSDLEIMQLVCGNDSSYQ--DIFAVNLEEA 286
I ++PIV+V +A GVV D +I++ +C + + +Q ++ +EEA
Sbjct: 248 TENSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEA 307
Query: 287 AELKIYTQQQALEFIGTKVKTVRRQKLSILQEGIEAIATTVIAHLT-VEALDFREKALYI 345
I + AL++IG + T + L+ + + ++ H+T +E + R KA ++
Sbjct: 308 --FVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETR-KAFFL 364
Query: 346 AMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKK 405
M R+++ + DDRD+ G KRL+LAG L++ LF LF+K D + K ++
Sbjct: 365 GYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVET 424
Query: 406 PNRAEMYDALLTINVHSNNITTGMNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALG 464
NR + LT+ V SN IT G+ +++TGNW KR + R GV+ VL+R ++ S L
Sbjct: 425 -NR----EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLS 479
Query: 465 MMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEP 524
+ R ++ + K++ PR L + +GM+C ++TPEG+ACGLVKNL+LM++++ P
Sbjct: 480 HLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAP 539
Query: 525 IKRICYLLGVEDISLIDSASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFI 584
I G+E + + ++ V++NG +G R P R LRR S +
Sbjct: 540 IIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEV 599
Query: 585 SIYTNTHQKAVHIATDGGRICRPLIIVSN-------GQSSVTADHLRSLLAGKLQFD--- 634
SI + +K + + TD GRICRPL IV N G+ + +H++ L+ K ++D
Sbjct: 600 SIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDP 659
Query: 635 -------DFLKLGLVEYLDVNEENDSFIALYEKDL 662
+ GL+EYLD EE IA+ +DL
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDL 694
>Hs14149912 [K] KOG0216 RNA polymerase I second largest subunit
Length = 459
Score = 299 bits (766), Expect = 1e-80
Identities = 173/444 (38%), Positives = 251/444 (55%), Gaps = 25/444 (5%)
Query: 655 IALYEKDLSENIT-HLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQ 713
+A++E ++ +T H E+ ++L +A IP+ NQSPRN YQC MGKQ +G
Sbjct: 3 VAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLLTY 62
Query: 714 FKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKAS 773
R D LY + PQ P+V+ + D D P G NA VAV+SY+GYD+EDA+++NKAS
Sbjct: 63 QDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 122
Query: 774 IDRGFGRCETRRKNTTVL-KRYPNHTQDIIGGMRVDENGEPIWQHQALGPDGLGEVGMKV 832
+RGF + L ++ ++ G++ G+P Q L DGL +G K+
Sbjct: 123 WERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIK---PGDP-RVLQKLDDDGLPFIGAKL 178
Query: 833 ESGQIYVNKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIK-- 890
+ G Y + + N +S + + Y++ E +D + + +D K
Sbjct: 179 QYGDPYYS-YLNLNTGESFV-----------MYYKSKENCVVDNIKVCSNDTGSGKFKCV 226
Query: 891 -VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVG 949
+ +R R P +GDKF+SRHGQKG+ + ED+PF + G+VPDI+ NPHGFPSRMT+G
Sbjct: 227 CITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIG 286
Query: 950 KMIELISGKAGVLNGTLEYGTCF----GGSKLEDMSKILVDNGFNYSGKDMLYSGITGEC 1005
+IE ++GK+ L+G T F S LE ++L G+N+ G + LYSGI+G
Sbjct: 287 MLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLE 346
Query: 1006 LQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIA 1065
L+A IF G +YYQ+L+HMV DK R G R +T QP GR+ GG+R GEMERD ++A
Sbjct: 347 LEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLA 406
Query: 1066 YGASQLLLERLMLSSDAFEVDVCE 1089
+G S LL +RL SD VCE
Sbjct: 407 HGTSFLLHDRLFNCSDRSVAHVCE 430
>Hs22058718 [K] KOG0215 RNA polymerase III second largest subunit
Length = 273
Score = 289 bits (739), Expect = 2e-77
Identities = 142/229 (62%), Positives = 177/229 (77%), Gaps = 4/229 (1%)
Query: 29 KKLTDEINTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEF 88
++L I T E+KW LLPAFLKVKGLVKQH+DSFNYF++V++KKI+KANE + SD DP +
Sbjct: 14 EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 89 YLKYIDIRVGY---KHNGNKAIMTPPHECRLRDMTYSTPIFVDIEYTRGRSIVLHRDVEI 145
YLKY++I VG + + N PHECRLRDMTYS PI VDIEYTRG ++ + I
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPI 133
Query: 146 GRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEA 205
GRMPIMLRS+ C+L G + AKLNECPLDPGGYFIV G EKVIL+QEQLSKNRIIVEA
Sbjct: 134 GRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEA 193
Query: 206 DEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVVVLK 254
D +K V ASVTSSTHE+KS+T + K + YL+HN+++E++PIV++ K
Sbjct: 194 D-RKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFK 241
>AtCh015 [K] KOG0214 RNA polymerase II second largest subunit
Length = 1072
Score = 135 bits (340), Expect = 4e-31
Identities = 108/371 (29%), Positives = 170/371 (45%), Gaps = 40/371 (10%)
Query: 744 KLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQDIIG 803
+L G+N VA M + GY+ EDA+++++ + +G T + +++Y T
Sbjct: 650 ELALGKNILVAYMPWEGYNFEDAVLISECLV---YGDIYT----SFHIRKYEIQTHVTTQ 702
Query: 804 GMRVDENGEPIWQHQAL---GPDGLGEVGMKVESGQIYVNKSVPTNASDS---------- 850
G P + + L +G+ +G VE+G I V K P A +S
Sbjct: 703 GPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLR 762
Query: 851 -ILTQTQAQYKETPVVYRAPEPSHIDQVMM----SVSDNDQALIKVLLRQNRRPELGDKF 905
IL + KET + + V S + +I+V + Q R ++GDK
Sbjct: 763 AILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSSYNPEIIRVYISQKREIKVGDKV 822
Query: 906 SSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGT 965
+ RHG KG+ I+ ++D+P+ G D++ NP G PSRM VG++ E G AG L
Sbjct: 823 AGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDR 882
Query: 966 LEYGTCFGGSKLEDMSKILVDNGF---------------NYSGKDMLYSGITGECLQAYI 1010
F ++ S+ LV + Y GK ++ G TG+ + +
Sbjct: 883 HYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPV 942
Query: 1011 FFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQ 1070
G Y KL H V DK+H R+ G A++T+QP GRS+ GG R+GEME + +G +
Sbjct: 943 IIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAH 1002
Query: 1071 LLLERLMLSSD 1081
+L E L SD
Sbjct: 1003 ILQEMLTYKSD 1013
>Hs9506619 [K] KOG0216 RNA polymerase I second largest subunit
Length = 336
Score = 56.2 bits (134), Expect = 3e-07
Identities = 74/278 (26%), Positives = 114/278 (40%), Gaps = 39/278 (14%)
Query: 54 LVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVGY-------------K 100
L + H++SFNY V L ++A P F + D R+ + K
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAI--------PPFEFAFKDERISFTILDAVISPPTVPK 89
Query: 101 HNGNKAIMTPPHECRLRDMTYSTPIFVDIEYT-RGRSIVLHRDVEIGRMPIMLRSNKCIL 159
K P ECR R TY + DI + G S + + +G +PIM++S C L
Sbjct: 90 GTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQF-LGYVPIMVKSKLCNL 148
Query: 160 DGAAENDMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTS- 218
+ + +E + GGYFI+NG EKVI + +N I K T
Sbjct: 149 RNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQY 208
Query: 219 --STHERKSKTYVVTKNDKIYLKHNSIAEE---------VPIVVVLKACGVVSDLEIMQ- 266
S H + + V N YL++ ++ +P+ LKA SD +I Q
Sbjct: 209 GVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQE 267
Query: 267 LVCG--NDSSYQDIFAVNLEEAAELKIYTQQQALEFIG 302
L+ G +DS ++ + L E TQ+Q L ++G
Sbjct: 268 LIKGKEDDSFLRNSVSQMLRIVMEEGWLTQKQVLNYLG 305
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,332,095
Number of Sequences: 60738
Number of extensions: 2960750
Number of successful extensions: 6938
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6716
Number of HSP's gapped (non-prelim): 40
length of query: 1142
length of database: 30,389,216
effective HSP length: 117
effective length of query: 1025
effective length of database: 23,282,870
effective search space: 23864941750
effective search space used: 23864941750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)