ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0373 check: MH A KOG0948 RNA processing and modification Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0373 129533 126315 -1073
(1073 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 1617 0.0
SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD... 1182 0.0
Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 999 0.0
7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 969 0.0
SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-... 889 0.0
At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 852 0.0
CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box ... 813 0.0
At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-bo... 802 0.0
At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 550 e-156
Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 540 e-153
SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 D... 514 e-145
ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-b... 504 e-142
YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 501 e-141
CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 419 e-116
ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DE... 344 5e-94
At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEA... 233 2e-60
7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-... 212 2e-54
CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 99 5e-20
SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily 98 6e-20
7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 97 1e-19
Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 96 2e-19
YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 94 9e-19
CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 91 1e-17
SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box sup... 85 5e-16
At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 85 7e-16
At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 83 3e-15
Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 82 3e-15
YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily 82 4e-15
Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box super... 81 8e-15
CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily 79 5e-14
At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 79 5e-14
YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 77 1e-13
CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 75 4e-13
Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 74 2e-12
SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 73 2e-12
ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily 73 3e-12
At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 72 5e-12
7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 70 2e-11
7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily 69 5e-11
Hs18556835 [R] KOG0949 Predicted helicase DEAD-box superfamily 67 1e-10
Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfa... 65 6e-10
ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily 59 4e-08
At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superf... 52 7e-06
>YJL050w [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1073
Score = 1617 bits (4188), Expect = 0.0
Identities = 816/1075 (75%), Positives = 903/1075 (83%), Gaps = 7/1075 (0%)
Query: 2 SDSLFDVFGETPNEDFELPPEALEESENEKSV---VKNSGTKRSNGDDAEQLQNSDISSS 58
S LFDVF ETP ELP ++ E + +V ++ K+ ++ ++ + S +
Sbjct: 3 STDLFDVFEETP---VELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSEN 59
Query: 59 KKVKMGITLIEDKKNKSVVIPVVADXXXXXXXXXXXXXXGLGNTQTVQLESDGKVKLRHQ 118
KK+K + EDK NK VV+PV+AD GL N++T+Q+E DGKV+L HQ
Sbjct: 60 KKIKSNKSKTEDK-NKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQ 118
Query: 119 VRHQVALPPNYDYKPIGDHVRTNEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKT 178
VRHQVALPPNYDY PI +H R NEARTYPFTLDPFQDTAISCIDR ESVLVSAHTSAGKT
Sbjct: 119 VRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKT 178
Query: 179 VVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMT 238
VVAEYAIAQSL+ KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMT
Sbjct: 179 VVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMT 238
Query: 239 TEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPN 298
TEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV YVFLSATIPN
Sbjct: 239 TEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPN 298
Query: 299 AMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMA 358
AMEFAEWIC+IHSQPCHIVYT+FRPTPLQHYLFPAHGDGI+LVVDEK TFREENFQKAMA
Sbjct: 299 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 358
Query: 359 SISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRD 418
SISNQ GDD ++ + RGKKGQ+Y IYKIV+MIWKKKYNPVIVFSFSKRD
Sbjct: 359 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRD 418
Query: 419 CEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSG 478
CEELALKMSKLDFNS++EKEALTKIF NAI LLPE+DRELPQIKHILPLLRRGIGIHHSG
Sbjct: 419 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSG 478
Query: 479 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 538
LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI
Sbjct: 479 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 538
Query: 539 QMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEG 598
QMS IVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEG
Sbjct: 539 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEG 598
Query: 599 ISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYYEIRKTLDGYNE 658
ISPEFMLE+SFFQFQN ISVPVMEKK+AEL + I+V+DE VKEY+EI + + GY E
Sbjct: 599 ISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYRE 658
Query: 659 DVRTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAVYSDEESYI 718
DVR ++THPAN+L+FLQPGRL+ + ++ K +YGW AVVDF KR NKRNP+AVY+D ESYI
Sbjct: 659 DVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYI 718
Query: 719 VNVVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLSSIQSIGNIRLYMP 778
VNVVVNTMY DSP+NL+KPFNPT PEGIRPAE+GEKS C +IPITL SI+SIGN+RLYMP
Sbjct: 719 VNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMP 778
Query: 779 NDIKAESQQATVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLYSN 838
DI+A Q+ TVGK+LRE RRFPDG+P++DPVKNM +VL +L SN
Sbjct: 779 KDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSN 838
Query: 839 PLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCTQS 898
PLTN++RL ELY KYS K + D+K LK KI+E+QAVIQ GFCT +
Sbjct: 839 PLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPN 898
Query: 899 DIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPRLKPE 958
DIIELKGRVACEISSGDELLLTELIFNGNFNEL P QAAALLSCFAFQERCKEAPRLKPE
Sbjct: 899 DIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPE 958
Query: 959 LAEPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGASFTQICKMTD 1018
LAEPLKAMRE+A KIAKI+KDSKIE+VEK+YVESFRHELMEVVYEWC+GA+FTQICKMTD
Sbjct: 959 LAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTD 1018
Query: 1019 VYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
VYEGSLIRMFKRLEE++KEL+DV+ TIGN++LKEKMEA L LIHRDIVSAGSLYL
Sbjct: 1019 VYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1073
>SPAC6F12.16c [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1117
Score = 1182 bits (3059), Expect = 0.0
Identities = 619/1066 (58%), Positives = 767/1066 (71%), Gaps = 28/1066 (2%)
Query: 25 EESENEKSVVKNSGTKR----SNGDDAEQLQNSDISSSK-KVKMGITLIEDK------KN 73
+ES +++ ++N + +N + + NS ++ +K K K+G +D KN
Sbjct: 63 QESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTKHKPKIGDIAADDISNEVSIKN 122
Query: 74 KSVVIP--VVADXXXXXXXXXXXXXXGLGNTQTVQLESDGKVKLRHQVRHQVALPPNYDY 131
+ IP VAD G+ ++ ++ V+LRHQVRHQV++PPNYDY
Sbjct: 123 EGDTIPEATVADSFEQEASLQVAGKVGMTEAKS---STEEVVELRHQVRHQVSIPPNYDY 179
Query: 132 KPIGDHVRT-NEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLR 190
PI H ARTYPFTLDPFQ +I+CI+R ESVLVSAHTSAGKTVVAEYA+AQSLR
Sbjct: 180 VPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLR 239
Query: 191 EKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS 250
+KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGD+TINPDA CLVMTTEILRSMLYRGS
Sbjct: 240 DKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGS 299
Query: 251 EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIH 310
EVMREVAWVIFDE+HYMRDKERGVVWEETIILLPDK H+VFLSATIPNAM+FAEWI +IH
Sbjct: 300 EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIH 359
Query: 311 SQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDD--V 368
QPCH+VYTDFRPTPLQHYLFP+ DGIHLVVDEK FREENFQ+AM+++ + GDD
Sbjct: 360 RQPCHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFREENFQRAMSALMEKQGDDPAA 419
Query: 369 HTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSK 428
G KKG++ IYKIV+MI K YNPVIVFSFSKR+CE LAL+MSK
Sbjct: 420 MATKGNAKKGKT---GKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSK 476
Query: 429 LDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 488
LD N + E++ +T IF NA++ L E DRELPQI+HILPLLRRGIGIHHSGLLPILKEVIE
Sbjct: 477 LDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIE 536
Query: 489 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSXXXXXXX 548
ILFQEG LKVLFATETFSIGLNMPAKTVVFT+VRK+DG+ FRW+SGGEYIQMS
Sbjct: 537 ILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRG 596
Query: 549 XXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLENS 608
IVI+MIDEKM+P VAK M+KG+ADRLDSAFHL YNMILNL+RVEGISPEFMLE
Sbjct: 597 LDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNLLRVEGISPEFMLERC 656
Query: 609 FFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYYEIRKTLDGYNEDVRTIITHPA 668
FFQFQN++ VP +E K+ E +S + DE ++EY+ ++ L+ Y DVRT++ HP
Sbjct: 657 FFQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLEEYHTLKTQLERYRTDVRTVVNHPN 716
Query: 669 NSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAVYSDEESYIVNVVVNTMYA 728
L+FLQ GRL+ VK+ N+ D+ W VV+ KR + + Y +ESYIV+ +V
Sbjct: 717 FCLSFLQGGRLVRVKVGNE-DFDWGVVVNVSKRPLPKGQSNEYLPQESYIVHTLVMVASD 775
Query: 729 DSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLSSIQSIGNIRLYMPNDIKAESQQA 788
P+ + P + P +K ++P LSS+ I +IR+++PND+K++ Q+
Sbjct: 776 TGPLRIRSGHLPE----VHPPAAEDKGKFEVVPFLLSSLDGIAHIRVFLPNDLKSQGQKL 831
Query: 789 TVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLYSNPLTNTVRLRE 848
TVGK L E RRFP+G+ ++DPV+NM +LE RL SNPL N L E
Sbjct: 832 TVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEE 891
Query: 849 LYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCTQSDIIELKGRVA 908
Y +Y K+A+ ++K+LK K+++A++++Q GF T D+IE+KGRVA
Sbjct: 892 KYAEYLRKLALLEEVKDLKKKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVA 951
Query: 909 CEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCK-EAPRLKPELAEPLKAMR 967
CEISSGD LLLTELIFNG FN+L+P Q AALLSC FQE+ + E R+K ELA PLK ++
Sbjct: 952 CEISSGDGLLLTELIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQ 1011
Query: 968 EVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGASFTQICKMTDVYEGSLIRM 1027
E+A +IAK+ K+SK EL E+EYV SF+ LMEVVY W GASF QICKMTDVYEGSLIRM
Sbjct: 1012 EMARRIAKVSKESKQELNEEEYVNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRM 1071
Query: 1028 FKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
F+RLEE+I++++D +K IGN +L++KME + IHRDIV + SLYL
Sbjct: 1072 FRRLEELIRQMVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>Hs14721269 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1042
Score = 999 bits (2583), Expect = 0.0
Identities = 502/953 (52%), Positives = 661/953 (68%), Gaps = 22/953 (2%)
Query: 121 HQVALPPNYDYKPIGDHVRTNEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVV 180
H+VALP DY P+ V A+ YPF LD FQ AI C+D +SVLVSAHTSAGKTV
Sbjct: 112 HEVALPAEEDYLPLKPRVG-KAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVC 170
Query: 181 AEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTE 240
AEYAIA +LREKQRVI+TSPIKALSNQKYRE+ EF DVGLMTGD+TINP A CLVMTTE
Sbjct: 171 AEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTE 230
Query: 241 ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAM 300
ILRSMLYRGSEVMREVAWVIFDE+HYMRD ERGVVWEETIILLPD VHYVFLSATIPNA
Sbjct: 231 ILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNAR 290
Query: 301 EFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASI 360
+FAEWIC +H QPCH++YTD+RPTPLQHY+FPA GDG+HLVVDE G FRE+NF AM +
Sbjct: 291 QFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVL 350
Query: 361 SNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCE 420
+ D+ + +G+KG ++KIV+MI ++ + PVI+FSFSK+DCE
Sbjct: 351 --RDAGDLAKGDQKGRKG--------GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCE 400
Query: 421 ELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLL 480
AL+M+KLDFN++EEK+ + ++F NAID L + D++LPQ++H+LPLL+RGIGIHH GLL
Sbjct: 401 AYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLL 460
Query: 481 PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQM 540
PILKE IEILF EG +K LFATETF++G+NMPA+TV+FT+ RK+DG+ FRW+S GEYIQM
Sbjct: 461 PILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQM 520
Query: 541 SXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGIS 600
S IVI+M+DEKM P + K ++KG AD L+SAFHL YNM+LNL+RVE I+
Sbjct: 521 SGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEIN 580
Query: 601 PEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYYEIRKTLDGYNEDV 660
PE+MLE SF+QFQ+ ++P + +KV I + +E +V YY+IR+ L +++
Sbjct: 581 PEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEI 640
Query: 661 RTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAVYSDEESYIVN 720
I P L FLQPGRL+ VK + D+GW VV+F K++N + + + Y+V
Sbjct: 641 EEYIHKPKYCLPFLQPGRLVKVKNEGD-DFGWGVVVNFSKKSNVKPNSGEL--DPLYVVE 697
Query: 721 VVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLSSIQSIGNIRLYMPND 780
V++ + + E +PA+ EK ++P+ + + +I ++RLY+P D
Sbjct: 698 VLLRCSK--------ESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKD 749
Query: 781 IKAESQQATVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLYSNPL 840
++ + +V K+++E +RFPDG+P++DP+ +M E E R+YS+PL
Sbjct: 750 LRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPL 809
Query: 841 TNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCTQSDI 900
N L +Y K I DIK+ K ++ +A+ V+Q GF T SD+
Sbjct: 810 HNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDV 869
Query: 901 IELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPRLKPELA 960
IE+KGRVACEISS DELLLTE++FNG FN+LS QA ALLSCF FQE E P+L +LA
Sbjct: 870 IEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLA 929
Query: 961 EPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGASFTQICKMTDVY 1020
PL+ M+E A +IAK+ ++K+E+ E+ Y+ SF+ LM+VVY W GA+F ICKMTDV+
Sbjct: 930 GPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVF 989
Query: 1021 EGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
EGS+IR +RLEE+++++ +K IGN L+ K + I RDIV A SLYL
Sbjct: 990 EGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>7298249 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1055
Score = 969 bits (2505), Expect = 0.0
Identities = 507/1087 (46%), Positives = 708/1087 (64%), Gaps = 51/1087 (4%)
Query: 3 DSLFDVFGE-TPNEDFELPPEAL--EESENEKSVVKNSGTKRSNGDDAEQLQNSDISSSK 59
+ LFD F E TP+ +PP AL EE + S K ++++G A + S +
Sbjct: 4 EELFDCFDEVTPS----VPPPALNQEEKPSGSSASKKGNKRQADGTTASKEATSSKGAEG 59
Query: 60 KVKMGITLIEDKKNKSVVIPVVADXXXXXXXXXXXXXXGLGNTQTVQLESDGKVK-LRHQ 118
K +T K+ K V D T+T+ ++ ++ LR +
Sbjct: 60 DDKGDVTEEPTKRLKQEASTVAVDDDNNADDEP---------TRTLDIDDSATLEALRTR 110
Query: 119 V-----------RHQVALPPNYDYKPIGDHVRTNEARTYPFTLDPFQDTAISCIDRMESV 167
+ H+VA P+ +Y P+ A+ YPF LDPFQ AI CID +SV
Sbjct: 111 IVTHLLDAPKSCTHEVAAHPDQEYIPLKPFSGV-PAKEYPFVLDPFQRQAILCIDNSQSV 169
Query: 168 LVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 227
LVSAHTSAGKTVVAEYAIA+SL KQRVIYT+PIKALSNQK+RE EF DVGL+TGD+T
Sbjct: 170 LVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVT 229
Query: 228 INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 287
INP A CL+MTTEILR+MLYRGSE+MREV WV+FDE+HYMRDKERGVVWEET+ILLPD V
Sbjct: 230 INPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNV 289
Query: 288 HYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGT 347
YVFLSATIPNA +FAEW+C +H QPCH+VYTD+RPTPLQHY+FPA GDGIHL+VDEKG
Sbjct: 290 RYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQ 349
Query: 348 FREENFQKAMASISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYN 407
F+E+NF AMA ++N G+ G+G + + I+KIV+MI ++ +
Sbjct: 350 FKEDNFTTAMAVLAN-AGE-----AGKGDQKGRHGGIKGTNAGQTNIFKIVKMIMERNFA 403
Query: 408 PVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPL 467
PVI+FSFSK+DCE A++M+KLDFN+ +EK+ + ++F NA+D+L E DR LPQ++++LPL
Sbjct: 404 PVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPL 463
Query: 468 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 527
LRRGIGIHH GLLPILKE IEILF EG +K LFATETF++GLNMPA+TV+FT+ RK+DG+
Sbjct: 464 LRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK 523
Query: 528 QFRWVSGGEYIQMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 587
+FRW+S GEYIQM+ IVI+MIDEK+ P V + +V+G+AD ++SAFHL Y
Sbjct: 524 KFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTY 583
Query: 588 NMILNLMRVEGISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYY 647
NM+LNL+RVE I+PE+MLE SF+QFQN ++P + +V + T L + + DE + Y+
Sbjct: 584 NMVLNLLRVEEINPEYMLERSFYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYH 643
Query: 648 EIRKTLDGYNEDVRTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKR-TNKRN 706
IR LD + + R IT P L FLQPGRL+ V ++ +Y W V++F K+ +++N
Sbjct: 644 HIRSQLDQHGKQFRQWITKPQYLLPFLQPGRLVKVAAGSQ-EYDWGIVLNFKKQDQSRKN 702
Query: 707 PTAVYSDEESYIVNVVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLSS 766
P E S ++V+++ A + +P P E+ ++P+ +
Sbjct: 703 PLKA---EPSVTIDVLLHVSEAAAKTGDTEPCKP-----------NERGCMEVVPVAHTL 748
Query: 767 IQSIGNIRLYMPNDIKAESQQATVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXXX 826
I I +IR+Y PND+++ + V KT++EA +RFP G P+++P+ +M
Sbjct: 749 ITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPPVLNPIDDMNIKDREFRDIVN 808
Query: 827 XXEVLEGRLYSNPLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXX 886
E RL +PL + L ++ +Y +KV ++ +++LK ++ A++++Q
Sbjct: 809 TISQFEKRLEEHPLHKSPELERIHRRYQDKVTLQKQLQDLKAELKAARSLLQMDELKHRK 868
Query: 887 XXXXXXGFCTQSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQ 946
G+C D+IE KGRVACE+SS DELL+TE+IFNG FN+L+ QA ALLSCF
Sbjct: 869 RVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTAPQAVALLSCFVCD 928
Query: 947 ERCKEAPRLKPELAEPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQ 1006
E+ E+ + EL+ PL++M+++A +IAK+ + K++L YV+ F+ LM+VV WC+
Sbjct: 929 EKSSESVKSATELSGPLRSMQDLARRIAKVSTECKLDLDADTYVDKFKPFLMDVVLAWCK 988
Query: 1007 GASFTQICKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIV 1066
G+SF +CKMTD++EGS+IR +RLEE+++++ SKTIGN L+ K + L+ RDIV
Sbjct: 989 GSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQASKTIGNTDLENKFSEGIRLLKRDIV 1048
Query: 1067 SAGSLYL 1073
A SLYL
Sbjct: 1049 FAASLYL 1055
>SPAC17H9.02 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1030
Score = 889 bits (2296), Expect = 0.0
Identities = 440/958 (45%), Positives = 645/958 (66%), Gaps = 28/958 (2%)
Query: 121 HQVALPPNYDYKPIGDHVRTNE-ARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTV 179
H+V +P +YDY P+ H+ ++ A+TYPF LDPFQ TAI C++RMESVLVSAHTSAGKTV
Sbjct: 96 HKVVVPDDYDYIPLNKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTV 155
Query: 180 VAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT 239
+AEYAIAQ+L+ +QRVIYTSPIK+LSNQKYRELL+EFGDVGLMTGD++INP A CL+MTT
Sbjct: 156 IAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTT 215
Query: 240 EILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNA 299
EILR+MLY+ SE+M E+AWVIFDEVHYMRDK+RGVVWEET+ILLPD + ++FLSAT+PNA
Sbjct: 216 EILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNA 275
Query: 300 MEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMAS 359
++FA WI IH QPCH+VYTD+RPTPLQH+++P DGI+++VDEK F+ ENF+K +
Sbjct: 276 LQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEV 335
Query: 360 ISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDC 419
+ + T + ++Y + +I+ M+ +Y+P+IVF FSK++C
Sbjct: 336 LDHST------------RQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKEC 383
Query: 420 EELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGL 479
E A + KLD N E KE +T+IF +AI+ L E DR L Q + + LL RGIGIHHSGL
Sbjct: 384 EINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGL 443
Query: 480 LPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQ 539
LPILKE++EILFQEG +++LFATETFSIGLNMPA+TV+FT +K+ G FRW++ GEY+Q
Sbjct: 444 LPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQ 503
Query: 540 MSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGI 599
MS + I+++D+ ++ Q A+ ++ GQAD L+SAFHL Y MILNLMR+E I
Sbjct: 504 MSGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHLSYGMILNLMRIEEI 563
Query: 600 SPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYYEIRKTLDGYNED 659
SPE +L+ SF+QFQN S+P++++++ +L + SI + +E AVKE+++++ L+ Y E+
Sbjct: 564 SPEDILKKSFYQFQNMESLPLIKEELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGEE 623
Query: 660 VRTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAVYSDEESYIV 719
++ ++THP N L +LQ GRLI +K+ + W +V+ +KR N + E+Y++
Sbjct: 624 IQKVMTHPDNCLPYLQSGRLIQIKLGG-IIFPWGVLVNVIKREFDPNTREQVAPHETYVL 682
Query: 720 NVVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLSSIQSIGNIRLYMPN 779
+V++ + ++S N + P + P E I+ + L+++ +I +IR+YMP
Sbjct: 683 DVLL-PISSNSMSN-----HKVNPSILVPPRPNETPLYEIVSVLLTAVCNISSIRIYMPR 736
Query: 780 DIKAESQQATVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLYSNP 839
++ + + + + E + F + +P +DP+++M E+LE +L+ +P
Sbjct: 737 ELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSP 795
Query: 840 LTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCTQSD 899
+ R Y ++ K+ + A IK++ KI +A+IQ GFCT +
Sbjct: 796 YYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKIRQRVLRRLGFCTLEN 855
Query: 900 IIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPRLKPEL 959
+I++KGRVACEI+SGDELLL ELIF G FN++ P + AA LSCF ++++ + + L
Sbjct: 856 VIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTL---NL 912
Query: 960 AEPLKAMR----EVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGASFTQICK 1015
EP K M E A +IA + +SK++ E +Y+ F+ ++ME V W GASF +IC
Sbjct: 913 KEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQFKPDIMEPVSLWINGASFQEICI 972
Query: 1016 MTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
++ +YEGS++R F+RL+E++K+L + +GN LKEK +HRDI+ + SLYL
Sbjct: 973 VSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030
>At1g59760 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 988
Score = 852 bits (2202), Expect = 0.0
Identities = 448/986 (45%), Positives = 634/986 (63%), Gaps = 31/986 (3%)
Query: 103 QTVQLESDGKVKLRHQVR---HQVALPPNYDYKPIGDHVRTNE-ARTYPFTLDPFQDTAI 158
Q VQ E D + ++ H V+ P NY P+ V A+ +PFTLD FQ AI
Sbjct: 19 QKVQREDDSTQIINEELVGCVHDVSFPENY--VPLAPSVHNKPPAKDFPFTLDSFQSEAI 76
Query: 159 SCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGD 218
C+D ESV+VSAHTSAGKTVVA YAIA SL+E QRVIYTSPIKALSNQKYR+ EF D
Sbjct: 77 KCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIKALSNQKYRDFKEEFSD 136
Query: 219 VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEE 278
VGLMTGD+TI+P+A CLVMTTEILRSM Y+GSE+MREVAW+IFDEVHYMRD ERGVVWEE
Sbjct: 137 VGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEE 196
Query: 279 TIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGI 338
+I++ P +VFLSAT+PNA EFA+W+ ++H QPCHIVYTD+RPTPLQHY+FPA G+G+
Sbjct: 197 SIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPAGGNGL 256
Query: 339 HLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIV 398
+LVVDEK F E++FQK++ ++ D NG+ +KG I+K+V
Sbjct: 257 YLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDNGKFQKG----LVIGKLGEESDIFKLV 312
Query: 399 RMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDREL 458
+MI +++Y+PVI+FSFSK++CE LA++MSK+ NS++EK+A+ IF +AID+L + D++L
Sbjct: 313 KMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKL 372
Query: 459 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 518
PQ+ +ILP+L+RGIG+HHSGLLPILKEVIEILFQEG +K LFATETFSIGLNMPAKTVVF
Sbjct: 373 PQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVF 432
Query: 519 TSVRKWDGQQFRWVSGGEYIQMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADR 578
T+VRK+DG +FRW+S GEYIQMS I I+M+DEKMEP VAK M+KG AD
Sbjct: 433 TNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADS 492
Query: 579 LDSAFHLGYNMILNLMRVEGISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVD 638
L+SAFHL YNM+LN +R E PE +L NSFFQFQ ++P +EK++ L +S+ ++
Sbjct: 493 LNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERDSLVIE 552
Query: 639 DEPAVKEYYEIRKTLDGYNEDVRTIITHPANSLAFLQPGRLINVKIDNKYDY-------- 690
+E ++K YY + +D+R I+ P L FL P R + + N +
Sbjct: 553 EEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVCLDCTNDDEEPQSFSIED 612
Query: 691 --GWAAVVDFVK-RTNKRNPTAVYSDEESYIVNVVVNTMYADSPINLIKPFNPTFPEGIR 747
W ++ F K ++ + + ++ +Y V+V+ M + + K ++
Sbjct: 613 QDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKDGVGKKK---------VK 663
Query: 748 PAEQGEKSTCTIIPITLSSIQSIGNIRLYMPNDIKAESQQATVGKTLREALRRFPDGVPI 807
E+ ++ + LS I+S+ + + +P D+ + K + E L R PDG+P+
Sbjct: 664 AVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIPL 723
Query: 808 VDPVKNMXXXXXXXXXXXXXXEVLEGRLYSNPLTNTVRLRELYEKYSNKVAIEADIKNLK 867
DP +M E LE + + + + E + K + A IK+LK
Sbjct: 724 -DPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLK 782
Query: 868 HKINEAQAVIQXXXXXXXXXXXXXXGFCTQSDIIELKGRVACEISSGDELLLTELIFNGN 927
+ + A+ G+ T +++ELKG+VACEISS +EL LTEL+F+G
Sbjct: 783 KTVRSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGI 842
Query: 928 FNELSPAQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREVAGKIAKIIKDSKIELVEK 987
F + + +LLSCF ++ER +A + + EL +++ A ++A++ D K+E+ +
Sbjct: 843 FKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEIDVE 902
Query: 988 EYVESFRHELMEVVYEWCQGASFTQICKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGN 1047
+V+SFR ++ME VY W +G+ F ++ ++ V+EGSLIR +R+EE++++LI +K+IG
Sbjct: 903 SFVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGE 962
Query: 1048 ATLKEKMEAALNLIHRDIVSAGSLYL 1073
L+ K+E A++ I RDIV A SLYL
Sbjct: 963 TQLEAKLEEAVSKIKRDIVFAASLYL 988
>CE06562 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 1026
Score = 813 bits (2100), Expect = 0.0
Identities = 430/957 (44%), Positives = 606/957 (62%), Gaps = 31/957 (3%)
Query: 121 HQVALPPNYDYKPIGDHVRTNEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVV 180
H+VA+PPN ++ + ++ T A+ YPF LD FQ AI CID +SVLVSAHTSAGKTVV
Sbjct: 97 HEVAIPPNAEFAELRENSGTEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVV 156
Query: 181 AEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTE 240
A YAIA+ LREKQRVIYTSPIKALSNQKYREL EF DVGLMTGD+T+NPDA CLVMTTE
Sbjct: 157 ATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTE 216
Query: 241 ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAM 300
ILRSMLYRGSE+M+EV WV++DE+HYMRDKERGVVWEETIIL+ + FLSATIPNA
Sbjct: 217 ILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNAR 276
Query: 301 EFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASI 360
+FA+W+ I QP ++VYTD+RPTPLQH+++P G+G++ VV+ KG FRE+ F+ AM+ +
Sbjct: 277 QFAQWVASIKQQPVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGL 336
Query: 361 SNQTGDDVHTIN----GRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSK 416
+ GD + N G G +G S + KI+R + IVFSFS+
Sbjct: 337 AT-AGDSAGSFNKRRTGGGTQGDS------------NVLKIIRSVASNDGLNCIVFSFSR 383
Query: 417 RDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHH 476
++CE A+ + +DFN + EK + ++++AI L D++LPQI +ILPLLRRGIG+HH
Sbjct: 384 KECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHH 443
Query: 477 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGE 536
SGL+PILKE IEILF EG +KVLFATETFS+GLNMPA+TVVFTS RK+DG R+++ GE
Sbjct: 444 SGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGE 503
Query: 537 YIQMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRV 596
YIQM+ VI+M+D M AK ++KG D L+S F L YNM+LNLMRV
Sbjct: 504 YIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNLMRV 563
Query: 597 EGISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYYEIRKTLDGY 656
EG++ +++ NSF QFQ+ +P ++KK ++ + S E ++ +++ L+
Sbjct: 564 EGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWENEMRTLVDLQDQLEAT 623
Query: 657 NEDVRTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAVYSDEES 716
+ + I P + FL GRL VK ++ D+ W + F K N + +++
Sbjct: 624 RQRIIQIQREPKYIVGFLHAGRLFKVKSGDR-DFKWGILNQFKKEQNPDD-----RNDQI 677
Query: 717 YIVNVVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLSSIQSIGNIRLY 776
Y+ ++++ IN F+PT P + P K +P+T+ I +I +RL
Sbjct: 678 YLCDMMI-------AINTEGRFDPTNPATLVPGFDLPKRRWIRVPMTIDRITAISAVRLK 730
Query: 777 MPNDIKAESQQATVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLY 836
+P DI Q + + A +RF + +P++DP+++M + LEGRL
Sbjct: 731 VPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTVEMKELIAREKSLEGRLE 790
Query: 837 SNPLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCT 896
++ +T +++L +++ K ++ LK + Q+ + G+
Sbjct: 791 THSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELNNRKRVLRRLGYLG 850
Query: 897 QSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPRLK 956
D + LKG VACE+S+ DEL+LTE++ G FN L AQ AALLSCF FQ++C AP+L
Sbjct: 851 NDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQDKC-AAPKLA 909
Query: 957 PELAEPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGASFTQICKM 1016
EL L + E A +AK+ + K+E++E +YV SF LM+VVY+W GA+F++I K
Sbjct: 910 TELQTCLSELHEQARNVAKVSNECKMEVMEDKYVSSFNPGLMDVVYQWVNGATFSEIVKT 969
Query: 1017 TDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
TDV+EGS+IR +RLEE+++E+I+ +K + N L++K E A + RDIV A SLYL
Sbjct: 970 TDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>At2g06990 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 996
Score = 802 bits (2071), Expect = 0.0
Identities = 438/981 (44%), Positives = 617/981 (62%), Gaps = 41/981 (4%)
Query: 115 LRHQVRHQVALPPNYDYKPIGDHV--RTNEARTYPFTLDPFQDTAISCIDRMESVLVSAH 172
L+ H+VA+P DY P + T + TYPF LDPFQ +++C++R ES+LVSAH
Sbjct: 35 LKRACVHEVAVPN--DYTPTKEETIHGTLDNPTYPFKLDPFQSVSVACLERKESILVSAH 92
Query: 173 TSAGKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDA 232
TSAGKT VAEYAIA + R+KQRVIYTSP+KALSNQKYREL EF DVGLMTGD+T++P+A
Sbjct: 93 TSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELQHEFKDVGLMTGDVTLSPNA 152
Query: 233 GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFL 292
CLVMTTEILR+MLYRGSEV++EVAWVIFDE+HYM+D+ERGVVWEE+II LP + VFL
Sbjct: 153 SCLVMTTEILRAMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFL 212
Query: 293 SATIPNAMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREEN 352
SAT+ NA EFAEWIC +H QPCH+VYTDFRPTPLQHY FP G G++LVVD+ FRE++
Sbjct: 213 SATMSNATEFAEWICYLHKQPCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQFREDS 272
Query: 353 FQKAMASISN-QTGDDVHTIN----GRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYN 407
F K + ++ D + N GRG KG +YKIV+MI ++K+
Sbjct: 273 FVKMQDTFPKPKSNDGKKSANGKSGGRGAKG-------GGGPGDSDVYKIVKMIMERKFE 325
Query: 408 PVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPL 467
PVI+FSFS+R+CE+ AL MSKLDFN++EEKE + ++F NA+ L E DR LP I+ +LPL
Sbjct: 326 PVIIFSFSRRECEQHALSMSKLDFNTDEEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPL 385
Query: 468 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 527
L+RGI +HHSGLLP++KE++E+LFQEG +K LFATETF++GLNMPAKTVVFT+V+KWDG
Sbjct: 386 LQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 445
Query: 528 QFRWVSGGEYIQMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 587
R++ GEYIQMS I I+MIDE+ME + M+ G+ L S F L Y
Sbjct: 446 SHRYIGSGEYIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKPAPLLSTFRLSY 505
Query: 588 NMILNLM-RVEG-ISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKE 645
ILNL+ R EG + E ++ +SF QFQ+ ++P + KV++L + E V E
Sbjct: 506 YTILNLLSRAEGQFTAEHVIRHSFHQFQHEKALPDIGNKVSKLEEEAAILNASGEAEVAE 565
Query: 646 YYEIRKTLDGYNEDVRTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKR 705
Y+ ++ + + + + + I P L FL GRL+ ++ + D+GW VV+ VK ++
Sbjct: 566 YHNLQFDIAKHEKKLMSEIIRPERVLCFLDTGRLVKIR-EGGTDWGWGVVVNVVKNSSVG 624
Query: 706 NPTAVYSDEESYIVNVVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKSTCTIIPITLS 765
+A S YIV+ +++ S N KP P P GEK ++P+ L
Sbjct: 625 TGSA-SSHGGGYIVDTLLHCSTGFSE-NGAKP-KPC------PPRAGEKGEMHVVPVQLP 675
Query: 766 SIQSIGNIRLYMPNDIKAESQQATVGKTLREALRRFPDGVPIVDPVKNMXXXXXXXXXXX 825
I ++ +R+ +P+D++ + ++ L+E RFP G P + PVK+M
Sbjct: 676 LISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKDMNIQDTEIVDLV 735
Query: 826 XXXEVLEGRLYSNPLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXX 885
E +E +L ++P+ + + + K + +I+ LK K+ ++Q
Sbjct: 736 SQIEEVEQKLLAHPMHKVSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKFRDELKNR 795
Query: 886 XXXXXXXGFCTQSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAF 945
G ++++KGR AC I +GDELL+TEL+FNG FN+L Q AAL SCF
Sbjct: 796 SRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIP 855
Query: 946 QERCKEAPRLKPELAEPLKAMREVAGKIAKIIKDSKIELVEKEYVES-FRHELMEVVYEW 1004
++ E L+ EL +PL+ +++ A KIA+I + K+E+ +EYVES R LM+V+Y W
Sbjct: 856 VDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTIRPFLMDVIYSW 915
Query: 1005 CQGASFTQICKMTDVYEGSLIRMFKRLEEMIKELID------------VSKTIGNATLKE 1052
+GASF +I +MTD++EGS+IR +RL+E + + D ++ +G ++L+
Sbjct: 916 SKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQKSDDTLIGDFLQLRAAAEAVGESSLES 975
Query: 1053 KMEAALNLIHRDIVSAGSLYL 1073
K AA + R I+ A SLYL
Sbjct: 976 KFAAASESLRRGIMFANSLYL 996
>At3g46960 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1347
Score = 550 bits (1417), Expect = e-156
Identities = 344/1000 (34%), Positives = 531/1000 (52%), Gaps = 75/1000 (7%)
Query: 146 YPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALS 205
+PF LD FQ AI C+++ ESV V+AHTSAGKTVVAEYA A + + R +YT+PIK +S
Sbjct: 348 FPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTIS 407
Query: 206 NQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH 265
NQKYR+ +F DVGL+TGD++I P+A CL+MTTEILRSMLYRG++++R++ WVIFDEVH
Sbjct: 408 NQKYRDFCGKF-DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVH 466
Query: 266 YMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFRPTP 325
Y+ D ERGVVWEE II+LP +++V LSAT+PN EFA+WI R + + T RP P
Sbjct: 467 YVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVP 526
Query: 326 LQHYLFPAHG------DGIHL---VVDEKGTFREENF-------QKAMASISNQTGD--D 367
L+H LF + + + L + D K + +++N ++ M S ++Q G
Sbjct: 527 LEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPKQQMGSSAHQDGSKSQ 586
Query: 368 VHTINGRGKK---------------GQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVF 412
H + RGK+ G S ++ + K PV+VF
Sbjct: 587 KHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKMSLLPVVVF 646
Query: 413 SFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGI 472
FSK C+ A ++ D S EK + A L SDR LPQ+ + LL RGI
Sbjct: 647 CFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRLQSLLHRGI 706
Query: 473 GIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 532
G+HH+GLLPI+KEV+E+LF G +KVLF+TETF++G+N PA+TVVF ++RK+DG++FR +
Sbjct: 707 GVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQL 766
Query: 533 SGGEYIQMS-XXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIL 591
GEY QM+ +V+M DE + + ++ G A RL+S F L Y MIL
Sbjct: 767 LPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGSATRLESQFRLTYIMIL 826
Query: 592 NLMRVEGISPEFMLENSFFQFQNAISVPVMEK----------KVAELTSVLESIK-VDDE 640
+L+RVE + E ML+ SF +F +P ++ K E+ ++ S + + E
Sbjct: 827 HLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMIKRSLPTKHIEIDLLIYSSRCIKGE 886
Query: 641 PAVKEYYEIRKTLDGYNEDVRTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVK 700
PA+++YY++ + YN + + + +FL GR++ +K D V+
Sbjct: 887 PAIEDYYDMYMEANEYNNKMSEAVMQSPYAQSFLVQGRVVVMKSGMGIDNLLGIVLKGPS 946
Query: 701 RTNKRNPTAVYSDE----ESYIVNVVVNTMYADSPINLIKPFNPTFPEGIRPAEQGEKST 756
TN++ V E E +V++ + + F E K
Sbjct: 947 NTNRQYVVLVIKSEIPPPEKNMVSIGKKSSDPSQGYFIAPKSKRGFEEEFYTKPSSRKGP 1006
Query: 757 CTIIPITLS----------SIQSIGNIRLYMPNDIKAESQQ---------ATVGKTLREA 797
+I I L ++ N D K + Q A +T+++
Sbjct: 1007 -VVIKIELPYHGVAAGVGYEVKGFDNKEFLCICDSKIKIDQVRLLEDGNKAAFSQTVQQL 1065
Query: 798 LRRFPDG---VPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLYSNPLTNTVRLRELYEKYS 854
L DG P +DPVK++ L ++ N V+L E +
Sbjct: 1066 LDLKSDGNKFPPALDPVKDLKLKDAELVETYYKWTNLLQKMSMNKCHGCVKLEEHMKLAR 1125
Query: 855 NKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCTQSDIIELKGRVACEISSG 914
+ D+K+L+ ++++ +A++Q G ++++KGRVACE++SG
Sbjct: 1126 EIKKHKTDLKDLEFQMSD-EALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSG 1184
Query: 915 DELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREVAGKIA 974
+EL+ T +F F EL P +A A++S F FQ++ AP L P+LA+ + + + A ++
Sbjct: 1185 EELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPTLTPKLAKAKQRLYDTAIRLG 1244
Query: 975 KIIKDSKIELVEKEYV-ESFRHELMEVVYEWCQGASFTQICKMTDVYEGSLIRMFKRLEE 1033
++ +++ +EY E+ + L+EVVYEW +G F +IC++TDV EG ++R RL+E
Sbjct: 1245 ELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDE 1304
Query: 1034 MIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
+E + + +GN+ L +KM+AA N I RDIV A SLY+
Sbjct: 1305 TCREFKNAAAIMGNSALHKKMDAASNAIKRDIVFAASLYV 1344
>Hs20631987 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1246
Score = 540 bits (1392), Expect = e-153
Identities = 334/963 (34%), Positives = 513/963 (52%), Gaps = 33/963 (3%)
Query: 133 PIGDHVRT--NEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLR 190
P+GD R A + F D FQ AI ++R +SV V+AHTSAGKTVVAEYAIA + +
Sbjct: 292 PVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQK 351
Query: 191 EKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGS 250
R IYTSPIKALSNQK+R+ FGDVGL+TGD+ ++P+A CL+MTTEILRSMLY GS
Sbjct: 352 HMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGS 411
Query: 251 EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIH 310
+V+R++ WVIFDEVHY+ D ERGVVWEE +I+LPD V + LSAT+PNA+EFA+WI R+
Sbjct: 412 DVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLK 471
Query: 311 SQPCHIVYTDFRPTPLQHYLFPAHGD----GIHLVVDEKGTFREENFQKAMASISNQTGD 366
+ +++ T RP PL+HYLF + + L++D +G F + + A+ + +
Sbjct: 472 RRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSK 531
Query: 367 DVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKM 426
T + Q ++ + + PV+VF+FS+ C+E A +
Sbjct: 532 HAQTFGAKQPTHQG-----GPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGL 586
Query: 427 SKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 486
+ LD + EK + + + L SDR+LPQ+ H+ LL RG+G+HHSG+LPILKE+
Sbjct: 587 TSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEI 646
Query: 487 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSXXXXX 546
+E+LF G +KVLFATETF++G+NMPA+TVVF S+RK DG FR + GEY+QM+
Sbjct: 647 VEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGR 706
Query: 547 XXXXXXXIVIMMIDEKMEPQVA--KGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFM 604
VI++ ++ P++A M+ G+ +L S F L Y MILNL+RV+ + E M
Sbjct: 707 RGLDPTGTVILLCKGRV-PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDM 765
Query: 605 LENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPA----VKEYYEIRKTLDGYNEDV 660
++ SF +F + E+ +AELT L +++ D + EYY + L +
Sbjct: 766 MKRSFSEFPSRKDSKAHEQALAELTKRLGALEEPDMTGQLVDLPEYYSWGEELTETQHMI 825
Query: 661 RTIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAV------YSDE 714
+ I N L L GR++ VK + ++ ++ + R T + S +
Sbjct: 826 QRRIMESVNGLKSLSAGRVVVVK-NQEHHNALGVILQVSSNSTSRVFTTLVLCDKPLSQD 884
Query: 715 ESYIVNVVVNTMYADSPINLIKPFNPTFP--EGIRPAEQGEKSTCTIIPITLSSIQSIGN 772
Y D + K F P P + + G+ + T + ++ + + +
Sbjct: 885 PQDRGPATAEVPYPDDLVG-FKLFLPEGPCDHTVVKLQPGDMAAITTKVLRVNGEKILED 943
Query: 773 IRLYMPNDIKAESQQATVGKTLREALR---RFPDGVPIVDPVKNMXXXXXXXXXXXXXXE 829
K + A V ++E LR P G P +DPV ++
Sbjct: 944 FSKRQQPKFKKDPPLAAVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRAR 1003
Query: 830 VLEGRLYSNPLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXX 889
LE + ++ R Y K ++ I+ +++ L+ +++ Q+++
Sbjct: 1004 KLEELIQGAQCVHSPRFPAQYLKLRERMQIQKEMERLRFLLSD-QSLLLLPEYHQRVEVL 1062
Query: 890 XXXGFCTQSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERC 949
G+ + ++L GRVAC +SS ELLLTEL+F+ + L P + AALLS Q
Sbjct: 1063 RTLGYVDEVGTVKLAGRVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPG 1121
Query: 950 KEAPRLKPELAEPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGAS 1009
+L L + ++ +R VA +I ++ + +E+V L+EVVYEW +G
Sbjct: 1122 DAGDQLPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMP 1181
Query: 1010 FTQICKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAG 1069
F+++ ++ EG ++R +RL EM + L ++ +G L KME A L+ RDIV A
Sbjct: 1182 FSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAA 1241
Query: 1070 SLY 1072
SLY
Sbjct: 1242 SLY 1244
>SPCC550.03c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1213
Score = 514 bits (1324), Expect = e-145
Identities = 328/961 (34%), Positives = 508/961 (52%), Gaps = 51/961 (5%)
Query: 143 ARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 202
A +PF LD FQ AI ++ +SV V+AHTSAGKTVVAEYAIA + + + IYTSPIK
Sbjct: 274 ALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIK 333
Query: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 262
ALSNQK+R+ +F DVG++TGD+ +NP+ CL+MTTEILRSMLYRG++++R+V +VIFD
Sbjct: 334 ALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFD 393
Query: 263 EVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFR 322
EVHY+ D ERGVVWEE II+LP V + LSAT+PN EFA W+ R + +++ T R
Sbjct: 394 EVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKR 453
Query: 323 PTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQ-----TGDDVHTINGRG-- 375
P PL+HYL+ + +VD+ G F + ++ A ++ D+ ++ GRG
Sbjct: 454 PVPLEHYLWVK--QNMFKIVDQHGRFLMDGYKSANDALKKPDKPVIAKDNKNSARGRGAA 511
Query: 376 ---------KKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKM 426
+G+ ++ ++ + K+ PVIVF FSK+ CEE +
Sbjct: 512 RGRGVQTNMMRGRGSAKSVERRDANTWVH-LIGHLHKQNLLPVIVFVFSKKRCEEYVDTL 570
Query: 427 SKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 486
+ D N+ +EK + + + A+ L + DR LPQI + +L RG+ +HH GLLPI+KE+
Sbjct: 571 TNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKEI 630
Query: 487 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMS-XXXX 545
+EILFQ G +KVLFATETF++G+NMPAK+VVF+ +K DG+ FR + GEY Q S
Sbjct: 631 VEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGR 690
Query: 546 XXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFML 605
++I+ E + + M+ G + +L S F L YNMILNL+RVE + E M+
Sbjct: 691 RGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLLRVETLRIEDMI 750
Query: 606 ENSFFQFQNAISVPVMEKKVAELTSVLESIKVD----DEPAVKEYYEIRKTLDGYNEDVR 661
+ SF + N VP E+K+ L ++K + D +K ++ Y + +
Sbjct: 751 KRSFSENVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMH 810
Query: 662 TIITHPANSLAFLQPGRLINVKIDNKYDYGWAAVVDFVKRTNKRNPTAVYSDEESYIVNV 721
AN + GR+I + +DF + T++ ++ + V
Sbjct: 811 FRAITTANGKRIFKDGRVIVFQ-----------QLDFTRTVGVLLGTSIRTNASDCTLEV 859
Query: 722 VVNTMYADSPINLIKP-----FNPTFPEGIRPAEQGEKSTCTIIPITLSSIQSIGNIRLY 776
Y + NL +P F F + A E + I LS I+ + N L
Sbjct: 860 A----YLNPQNNLKRPSDLLAFADAFNDVYDNAIFDESNQFKYGLINLSGIERVCNTILR 915
Query: 777 MPNDIKAESQQATVGKTLRE--ALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGR 834
+ + + + K + ++++F D + + V L+ +
Sbjct: 916 IDSGGIRDRRGGAFRKLSEQFASIKKFSD--LLFEEVNWSKVRDFEFCEAFEKRNFLQNK 973
Query: 835 LYSNPLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGF 894
L NP+ +T + + +E++I NL I++ Q + G+
Sbjct: 974 LSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISD-QNLELLPDYEQRIKVLQELGY 1032
Query: 895 CTQSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAPR 954
+ LKGRVACEI+S EL+LTELI + + S + ALLS F F E+ + P
Sbjct: 1033 IDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVFDEKTEVEPT 1092
Query: 955 LKPELAEPLKAMREVAGKIAKIIKDSKIELVEK--EYVESFRHELMEVVYEWCQGASFTQ 1012
+ P L + + + VA K+ +I + ++ + ++ R LMEV YEW +G SF +
Sbjct: 1093 ISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYEWARGMSFNR 1152
Query: 1013 ICKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLY 1072
I +TDV EGS++R RL+E+++E ++ +G++++ KME NLI R+IV SLY
Sbjct: 1153 ITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEECQNLIRRNIVFCPSLY 1212
Query: 1073 L 1073
+
Sbjct: 1213 M 1213
>ECU04g0910 [A] KOG0948 Nuclear exosomal RNA helicase MTR4 DEAD-box superfamily
Length = 933
Score = 504 bits (1297), Expect = e-142
Identities = 280/540 (51%), Positives = 350/540 (63%), Gaps = 34/540 (6%)
Query: 116 RHQVRHQVALPPNYDYKPIGDHVRTNEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSA 175
R+ RH+ +P Y + A+ Y F LD FQ ++ ++R ESVLVSAHTS+
Sbjct: 37 RNGTRHEAVVPVGAAYTLLPKQFCKPAAKNYLFELDDFQKISVCSLERDESVLVSAHTSS 96
Query: 176 GKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCL 235
GKTVVAEYAIA SLR QRV+YTSPIKALSNQKYRELL+EF DVGLMTGD+TINP A CL
Sbjct: 97 GKTVVAEYAIAMSLRSNQRVVYTSPIKALSNQKYRELLSEFSDVGLMTGDVTINPTASCL 156
Query: 236 VMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSAT 295
VMTTEILR+MLYRG EV+RE+ W+IFDE+HYMRDKERGVVWEETIILLP V VFLSAT
Sbjct: 157 VMTTEILRNMLYRGGEVVREIHWIIFDEIHYMRDKERGVVWEETIILLPKHVRMVFLSAT 216
Query: 296 IPNAMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQK 355
IPNA+EFAEWI I SQ H+VYT+ R TPL HY + ++ + D K F + NF
Sbjct: 217 IPNALEFAEWISHIQSQVVHVVYTEKRVTPLVHYF---RSNKLYKIKDAK--FHKSNFLS 271
Query: 356 AMASISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFS 415
AM SI + G + G++ PV+VFSF
Sbjct: 272 AMRSIRKRN-------VGPREVGEAIGDASL---------------------PVVVFSFK 303
Query: 416 KRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIH 475
++DCE A+K+ + ++EE + IF NAI L + DRE+P I++ILPLL RGIGIH
Sbjct: 304 RKDCERFAMKLDG-RYLTDEEARTVQTIFTNAIMSLRKEDREIPIIQNILPLLMRGIGIH 362
Query: 476 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 535
HSGLLPI+KEV+EILFQEG LKVLFATETFSIGLNMPAK+VVFT+++K+DG+ R VS G
Sbjct: 363 HSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDGEAMRLVSSG 422
Query: 536 EYIQMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMR 595
EYIQMS IVI +I E + + A + +D L SAF L YNM+LNLMR
Sbjct: 423 EYIQMSGRAGRRGIDSMGIVISIISEPITYKEASRLFSASSDNLVSAFRLTYNMLLNLMR 482
Query: 596 VEGISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESIKVDDEPAVKEYYEIRKTLDG 655
VEG+ P +++ SF FQ+ E+ + + LE I+ ++ + E +K G
Sbjct: 483 VEGLDPLYLISRSFHHFQSYKKALAEEETLHLMYRRLEDIEPNETACLYRKREEKKVERG 542
Score = 142 bits (357), Expect = 4e-33
Identities = 73/180 (40%), Positives = 110/180 (60%), Gaps = 1/180 (0%)
Query: 894 FCTQSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQERCKEAP 953
+C + ++ +KGR+ACEISSGDEL+LTE+IFNG+F + LLSC F+E ++
Sbjct: 755 YCDDTTVL-IKGRMACEISSGDELVLTEMIFNGDFAGIPVEHFVPLLSCIVFEEWDSDSF 813
Query: 954 RLKPELAEPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQGASFTQI 1013
L E + + + K+ K++K IE+ Y++ F +ELM+VV W G +F I
Sbjct: 814 VLSDENKLYYRLLSDSVEKVCKVLKSCGIEIDPAAYLKRFSYELMDVVRMWVCGCTFISI 873
Query: 1014 CKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
C T ++EGS+IR FKRLEE++++L ++ IGN L+ + I RDIV A SLY+
Sbjct: 874 CSKTSIFEGSIIRTFKRLEELLRQLSSAARVIGNTELENMFALGIVKIKRDIVFANSLYI 933
>YLR398c [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1287
Score = 501 bits (1289), Expect = e-141
Identities = 340/1001 (33%), Positives = 518/1001 (50%), Gaps = 92/1001 (9%)
Query: 136 DHVRTNEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRV 195
D + N AR++PF LD FQ A+ +++ +SV V+AHTSAGKTVVAEYAIA + R +
Sbjct: 316 DELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKT 375
Query: 196 IYTSPIKALSNQKYRELLAEFGDV--GLMTGDITINPDAGCLVMTTEILRSMLYRGSEVM 253
IYTSPIKALSNQK+R+ F DV GL+TGD+ INPDA CL+MTTEILRSMLYRG++++
Sbjct: 376 IYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLI 435
Query: 254 REVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQP 313
R+V +VIFDEVHY+ D++RGVVWEE II+LP V ++ LSAT+PN EFA WI R +
Sbjct: 436 RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKN 495
Query: 314 CHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQK------------AMASIS 361
+++ T RP PL+ ++ + V+++ F E NF+K A +
Sbjct: 496 IYVISTPKRPVPLEINIWAK--KELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTD 553
Query: 362 NQTGDDV--------HTINGRGKKGQSYXXXXXXXX--------------------XXXX 393
N G +T +GRG +G S
Sbjct: 554 NGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT 613
Query: 394 IYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPE 453
+IV + K++ P++VF FSK+ CEE A + ++F + +EK + + +I L +
Sbjct: 614 WPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKK 673
Query: 454 SDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPA 513
DR+LPQI LL RGI +HH GLLPI+KE+IEILF +GF+KVLFATETF++GLN+P
Sbjct: 674 EDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT 733
Query: 514 KTVVFTSVRKWDGQQFRWVSGGEYIQMS-XXXXXXXXXXXXIVIMMIDEKMEPQVAKGMV 572
+TV+F+S+RK DG R ++ GE+ QM+ +++M + + K +
Sbjct: 734 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT 793
Query: 573 KGQADRLDSAFHLGYNMILNLMRVEGISPEFMLENSFFQFQNAISVPVMEKKVAELTSVL 632
G RL S F L YNMILNL+R+E + E M++ SF + P EK++ L L
Sbjct: 794 MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEEL 853
Query: 633 ESIKVDD----EPAVKEYYEIRKTLDGYNEDVRTIITHPANSLAFLQPGRLINVKIDNKY 688
++I+ + ++++ E+ ++ + + L L+ GRL+ + N
Sbjct: 854 QTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPND- 912
Query: 689 DYGWAAVVDFVKRTNKRNPTAVYSDEESYIVNVVVNTMYADSPINLIKPFNPTFPEGIRP 748
+ FV + + ++ V I+ + N + F R
Sbjct: 913 ----CLKLGFVFKVSLKDAVCV-------IMTFTKPYKLPNGEPNHLIYFPKADGYRRRN 961
Query: 749 AEQGEKSTCTIIPITLSSIQSIGNIRLYMP------------NDIKAESQQATVGKTLRE 796
+ +K+ + + +++I+ I + P N+ AE+ GKTL+E
Sbjct: 962 FPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDGKTLKE 1021
Query: 797 ALRRFPDGVPIVDPVKNMXXXXXXXXXXXXXXEVLEGRLYSNPLTNTVRLRELYEKYSNK 856
A+ G+ I E+ + + P + + + K+
Sbjct: 1022 AINIEKQGLKI---------HQILLDRTNIRDEIFKLKSIKCPNLS----QHIVPKFKAH 1068
Query: 857 VAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCTQSDIIELKGRVACEISSGDE 916
V I+ I+ L H +++ Q + F Q+ + LKGRVACEI+SG E
Sbjct: 1069 V-IKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYE 1126
Query: 917 LLLTELIFNGNFNELSPAQAAALLSCFAFQ--ERCKEAPRLKPELAEPLKAMREVAGKIA 974
L+LTELI + P + ALLS F ++ R +E P + P LA+ + + E+ K+
Sbjct: 1127 LVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKML 1186
Query: 975 KIIKDSKIELV--EKEYVESFRHELMEVVYEWCQGASFTQICKMTDVYEGSLIRMFKRLE 1032
+ +I L E E+++ R +M VVYEW +G SF +I +M+ EG+++R+ L+
Sbjct: 1187 CVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLD 1246
Query: 1033 EMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVSAGSLYL 1073
E+ +E+ S IGN+TL KM A LI RDIV A SLYL
Sbjct: 1247 EICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
>CE20651 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1260
Score = 419 bits (1076), Expect = e-116
Identities = 219/509 (43%), Positives = 318/509 (62%), Gaps = 17/509 (3%)
Query: 143 ARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 202
AR YPF+LDPFQ +++ C++R ES+ V+AHTSAGKTVVAEYAIA K R +YTSPIK
Sbjct: 280 ARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIK 339
Query: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 262
ALSNQK+R+ FGDVGL+TGDI ++P+A CL+MTTEILRSMLY GSEV+R++ WV+FD
Sbjct: 340 ALSNQKFRDFKQIFGDVGLVTGDIQLHPEAACLIMTTEILRSMLYNGSEVIRDLEWVVFD 399
Query: 263 EVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFR 322
EVHY+ ++ERG VWEE +I+LP V V LSAT+PN +EFA+W+ RI ++ +++ TD R
Sbjct: 400 EVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRR 459
Query: 323 PTPLQHYLFPAHGDG-----IHLVVDEKGTFREENFQKAMAS---------ISNQTGDDV 368
P PL+H+L+ DG + ++D G F + + A S G
Sbjct: 460 PVPLEHFLYTGQ-DGKTQKDLFKIIDRSGQFILKGYNDAKDSKAKIYEKEKAGGAGGRGT 518
Query: 369 HTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSK 428
GRG G ++ + P++VF FS++ C+E A ++
Sbjct: 519 QRGGGRGGGGNGGGRNWPGKNDKNIYLNLINYMKCSDQLPMVVFVFSRKRCDENAQMLAS 578
Query: 429 LDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 488
++ +E EK+ + F + L SD+ELPQ+ + L RG +HHSG+LPILKEV+E
Sbjct: 579 MNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVE 638
Query: 489 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSXXXXXXX 548
+LFQ+G++K+LFATETF++G+NMPA+ VVF S+ K DG + R ++ GEY QM+
Sbjct: 639 LLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTERRMLNPGEYTQMAGRAGRRG 698
Query: 549 XXXXXIVIMMIDEKMEPQ--VAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLE 606
VI++ + PQ V K ++ GQA RL+S F + Y+MILNL+RVE + E ML+
Sbjct: 699 LDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESKFRVTYSMILNLLRVEQLKIEDMLQ 758
Query: 607 NSFFQFQNAISVPVMEKKVAELTSVLESI 635
S+ + + K + + + ++++
Sbjct: 759 RSYVESDSLRESKEKRKSLVDTKNAIQTM 787
Score = 115 bits (289), Expect = 3e-25
Identities = 82/245 (33%), Positives = 126/245 (50%), Gaps = 21/245 (8%)
Query: 837 SNPLTNTVRLRELYEKYSNKVAIEADIKNLKHKINEAQAVIQXXXXXXXXXXXXXXGFCT 896
S P + R E + +++ IE I++L+++++ + A++ F
Sbjct: 1025 SFPARHCTRFDEHFSVLRDRIRIERKIESLEYELS-SDALLLSEEYHNRLKVLEALNFVE 1083
Query: 897 QSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLSCFAFQ-----ERCKE 951
Q ++ LKGR+ CEI ELL+TELI + F++ SPA+ AALLS Q E
Sbjct: 1084 QK-MVSLKGRIGCEIHH-QELLITELILDYKFHQRSPAELAALLSTLTCQYNSGREMQFG 1141
Query: 952 APRLKPELAEPLKA----MREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVVYEWCQG 1007
+ E++E +K+ + VA K I D E+ R +LMEVVYEW G
Sbjct: 1142 GDTVFGEISESVKSVLTRLESVASKHKSQISDLGCEI---------RFDLMEVVYEWANG 1192
Query: 1008 ASFTQICKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLIHRDIVS 1067
F QI +MTD EG +++ +RL+E+ K++ + + +G+ L EKME I RDIV
Sbjct: 1193 TPFYQIMEMTDCQEGLIVKCIQRLDEVCKDVRNAGRIVGDPALVEKMEEVSASIRRDIVF 1252
Query: 1068 AGSLY 1072
A SLY
Sbjct: 1253 AASLY 1257
>ECU04g1290 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 881
Score = 344 bits (882), Expect = 5e-94
Identities = 204/539 (37%), Positives = 297/539 (54%), Gaps = 33/539 (6%)
Query: 98 GLGNTQTVQLESDGKVKLRHQVRHQVALPPNYDYKPIGDHVRTNEARTYPFTLDPFQDTA 157
G+ + T + E+ G K + Q LP DY D N F D FQ A
Sbjct: 19 GVESKDTPRTETKGVEKKHSVLVKQDWLPS--DYAQYVDEKILNIG----FEPDTFQRQA 72
Query: 158 ISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFG 217
+ R SV VSAHTS+GKT+VAEYAI+ S R IYTSPIKALSNQKY + ++
Sbjct: 73 FYLLSRASSVFVSAHTSSGKTLVAEYAISLSQIHGTRTIYTSPIKALSNQKYHDFKQKYD 132
Query: 218 DVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWE 277
DVG++TGD+ +NP A CLVMTTEILR+++YR +++R+ +V+FDEVHY+ D ERGVVWE
Sbjct: 133 DVGIITGDVQVNPAAKCLVMTTEILRNLVYRNGDLLRDTEFVVFDEVHYINDSERGVVWE 192
Query: 278 ETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDG 337
E II++P ++++ LSATIPN++EF+EW+ R + +++ T R PL+H ++
Sbjct: 193 ECIIMIPRHINFIMLSATIPNSLEFSEWVGRTKDKTIYVISTSKRAVPLEHVIYCDW--C 250
Query: 338 IHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKI 397
++ + D G NF+ + S +T G+ K I +
Sbjct: 251 VYSIDDGGGKRNASNFKGDLVPFSKKTRP-----TGKFK-----------------ILDV 288
Query: 398 VRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRE 457
+ KKK P I F FSKR CE+ A + L+ N + +E + A L DR
Sbjct: 289 ANFVVKKKLTPAIFFCFSKRKCEDYAEILRTLNLNDTKSREEVKLFLSEATRCLSPEDRN 348
Query: 458 LPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 517
LPQ+ + ++ G+ +HH LLP +KE +E+LF +K+L ATETF++G+NMPAK V
Sbjct: 349 LPQVLSMSSMVLNGVAVHHGSLLPFVKECVELLFSMNLVKLLIATETFAMGVNMPAKCCV 408
Query: 518 FTSVRKWDGQQFRWVSGGEYIQMSXXXXXXXXXXXXIVIMMIDEKMEP-QVAKGMVKGQA 576
F S+ K DG FR++S GEYIQMS +M+ D KM +G++ G
Sbjct: 409 FLSLSKIDGGVFRYISSGEYIQMSGRAGRRGMDAVG-TVMIADPKMPSLSTIQGIIHGTP 467
Query: 577 DRLDSAFHLGYNMILNLMRVEGISPEFMLENSFFQFQNAISVPVMEKKVAELTSVLESI 635
L S F L + +IL +R I E ++ S+ + ++ + KK++EL SV E +
Sbjct: 468 FSLSSQFRLSFGLILISLR-SNIRVEDLMRRSYGEHRSQRNYERDMKKLSELESVEEDV 525
Score = 93.2 bits (230), Expect = 2e-18
Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 17/252 (6%)
Query: 829 EVLEGR----LYSNPLTNTVRLRELYEKYSNKVAIEA---DIKNLKHKINEAQAVIQXXX 881
+VLE R LY L+ RE + YSN + + ++ ++K + N ++
Sbjct: 640 DVLEIRKIKSLYDYLLSEQQVCREFDQHYSNALRVHCKRKEMNDIKIRYNVC-SLGMIDE 698
Query: 882 XXXXXXXXXXXGFCTQSDIIELKGRVACEISSGDELLLTELIFNGNFNELSPAQAAALLS 941
GF ++I +KGR A EI + +E+L+ E+IF+ F ++ + +L+S
Sbjct: 699 YNRRMEFLKKKGFV--EEMITIKGRAAAEIHTVNEVLVVEMIFSNEFRQMDGRKIVSLMS 756
Query: 942 CFAFQERCKEAPRLKPELAEPLKAMREVAGKIAKIIKDSKIELVEKEYVESFRHELMEVV 1001
+E + L L + K M E ++++ + + I L++ V
Sbjct: 757 SMIHEEA--DGQELGKALYDECKRMDECFRELSRDLDELMIPPFTP-----LNFSLVDAV 809
Query: 1002 YEWCQGASFTQICKMTDVYEGSLIRMFKRLEEMIKELIDVSKTIGNATLKEKMEAALNLI 1061
Y+WC G+S +I +V EG+ +R+ RLEE +ELI VS IG+ +L+EK+ A +
Sbjct: 810 YDWCNGSSLGKIVSRYNVLEGTFVRLVLRLEECCRELISVSTMIGDKSLEEKIGDASASM 869
Query: 1062 HRDIVSAGSLYL 1073
RDI+ SLYL
Sbjct: 870 KRDIIFLPSLYL 881
>At1g70070 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 1171
Score = 233 bits (593), Expect = 2e-60
Identities = 170/478 (35%), Positives = 236/478 (48%), Gaps = 37/478 (7%)
Query: 146 YPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIKALS 205
Y F +D FQ AI R SV+VSA TS+GKT++AE A ++ + +R+ YT+P+KALS
Sbjct: 151 YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALS 210
Query: 206 NQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRGSEV------MREVA 257
NQK+RE FGD VGL+TGD IN DA ++MTTEILR+MLY+ + + V
Sbjct: 211 NQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVD 270
Query: 258 WVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIV 317
++ DEVHY+ D RG VWEE +I P +V + LSAT+ N E A WI IH + +V
Sbjct: 271 AIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGK-TELV 329
Query: 318 YTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREE----NFQKAMASISNQTGDDVHTING 373
+ RP PL Y H + ++DEKG N+ + AS + DD
Sbjct: 330 TSTRRPVPLTWYFSTKH--SLLPLLDEKGINVNRKLSLNYLQLSASEARFRDDDDGYRKR 387
Query: 374 RGKK---GQSYXXXXXXX---XXXXXIYKIVR--------MIWK---KKYNPVIVFSFSK 416
R KK SY I KI R +W K P I F F++
Sbjct: 388 RSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFNR 447
Query: 417 RDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHH 476
R C+ + + EK + K L P++ RE + K +L RGI HH
Sbjct: 448 RGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAE-KGLL----RGIAAHH 502
Query: 477 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGE 536
+G LP+ K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G + + E
Sbjct: 503 AGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNE 562
Query: 537 YIQMSXXXXXXXXXXXXIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM 594
QM+ +++ + +V L S F Y M+LNL+
Sbjct: 563 LYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGMVLNLV 620
>7301051 [A] KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box
superfamily
Length = 474
Score = 212 bits (540), Expect = 2e-54
Identities = 104/164 (63%), Positives = 127/164 (77%)
Query: 143 ARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQRVIYTSPIK 202
A +PF LD FQ AI +++ + V V+AHTSAGKTVVAEYAIA S R+ R IYTSPIK
Sbjct: 256 AMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIALSKRDLTRTIYTSPIK 315
Query: 203 ALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 262
ALSNQKYR+ F DVGL+TGD+ I P A CL+MTTEILRSMLY GS+V R++ WVIFD
Sbjct: 316 ALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLYCGSDVTRDLEWVIFD 375
Query: 263 EVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWI 306
EVHY+ + ERG VWEE IILLP+ V+ + LSAT+PN +E A+W+
Sbjct: 376 EVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWV 419
>CE20305 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1798
Score = 98.6 bits (244), Expect = 5e-20
Identities = 106/408 (25%), Positives = 174/408 (41%), Gaps = 82/408 (20%)
Query: 151 DPFQDTAISCIDRME-SVLVSAHTSAGKTVVAEYAIAQSLREK--QRVIYTSPIKALSNQ 207
+P Q C+ + + S L+ A T +GKT+ AE A+ + L++ +V+Y +P+K+L +
Sbjct: 962 NPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRE 1021
Query: 208 KYRELLAEFGD-----VGLMTGDITINPD---AGCLVMTTE-----ILRSMLYRGSEVMR 254
+ + +F D V ++GD+T +P+ A +++TT I RS R E +R
Sbjct: 1022 RVDDWKKKFEDGMGYRVVEVSGDVTPDPEELAASSILITTPEKWDGISRSWATR--EYVR 1079
Query: 255 EVAWVIFDEVHYMRDKERGVVWEETIILL----------PDKVHYVFLSATIPNAMEFAE 304
V ++ DEVH + +RG V E + L + V + LS + NA + AE
Sbjct: 1080 RVGLIVLDEVHLL-GVDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAE 1138
Query: 305 WICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQT 364
W+ I + C+ RP P+ +H+
Sbjct: 1139 WL-GIPDEACYNFRPSVRPVPI----------SVHI------------------------ 1163
Query: 365 GDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELAL 424
+G GQ Y YK + +K PV++F S+R AL
Sbjct: 1164 ---------QGFPGQHYCPRMGLMNKPA--YKAILTYSPRK--PVLIFVSSRRQTRLTAL 1210
Query: 425 KMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILK 484
L K+ L DL+ E +K LP GIG+HH+GL +
Sbjct: 1211 AFVNLLIADHNPKQWLNMDMLELEDLMAAIKDE--NLKLTLPF---GIGMHHAGLSAHER 1265
Query: 485 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 532
++E LF E ++VL AT T + G+N PA V+ +DG++ ++V
Sbjct: 1266 AIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGKKGKYV 1313
Score = 88.6 bits (218), Expect = 5e-17
Identities = 98/394 (24%), Positives = 166/394 (41%), Gaps = 76/394 (19%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSLREKQ-----------RVIYTSPIKALSNQKYRELL 213
E++L+ A T AGKT +A I ++ E Q ++IY +P+KAL+ +
Sbjct: 109 ENLLICAPTGAGKTNIAMLTILNTIHEHQNSRGDIMKDDFKIIYIAPMKALATEMTESFG 168
Query: 214 AEFGDVGL----MTGDITIN----PDAGCLVMTTE---ILRSMLYRGSEVMREVAWVIFD 262
+GL +TGD ++ D LV+T E ++ + ++ V +I D
Sbjct: 169 KRLAPLGLKVKELTGDTQLSRNEVADTQMLVLTPEKWDVITRKSTSDNSLINVVRLLIID 228
Query: 263 EVHYMRDKERGVVWEETII-------LLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCH 315
EVH + D ERG V E + + + V LSAT+PN ++ A ++ +
Sbjct: 229 EVHLLHD-ERGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNFIDVARFLRVNPYKGLF 287
Query: 316 IVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRG 375
FRP PL GT + NF+ + + N D+V RG
Sbjct: 288 FFDGRFRPVPLTQKFI--------------GTRKAGNFRDNLTLMDNVCYDEVVDFVKRG 333
Query: 376 KKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEE 435
++++ + + + +F R A + ++D +
Sbjct: 334 -------------------HQVLVFVHTRNGTAKLGEAFCAR-----ASVLGQMDLFLPK 369
Query: 436 EKEALTKI-FKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 494
++ + I AI++ R QI PL +RG+GIHH+GL + ++E F EG
Sbjct: 370 DRASSKYIQADKAINIC----RNRAQIS---PLFQRGMGIHHAGLCRQDRILMERCFAEG 422
Query: 495 FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 528
+ VLF T T + G+N+PA VV +D ++
Sbjct: 423 HVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEK 456
>SPAC694.02 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1717
Score = 98.2 bits (243), Expect = 6e-20
Identities = 69/203 (33%), Positives = 106/203 (51%), Gaps = 21/203 (10%)
Query: 148 FTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQR--VIYTSPIKALS 205
F D +Q + +DR ESV V A TS+GKT ++ YA+ + LR+ VIY +P KAL
Sbjct: 734 FDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKALV 793
Query: 206 NQKYRELLAEFGD---------VGLMTGDITINPDAGCLVMTT--EILRSMLYR---GSE 251
NQ E+ A F + T D IN C V+ T +L+SML + +
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANA 853
Query: 252 VMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIC---R 308
++ +IFDE+H + E G+V E+ ++L P + V LSAT+ N EF W+ R
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLLAPCPI--VALSATVGNPQEFQVWLSALQR 911
Query: 309 IHSQPCHIVYTDFRPTPLQHYLF 331
HS P H++ + R + L+ +++
Sbjct: 912 AHSYPIHLIVHEHRYSDLRKFVY 934
Score = 62.8 bits (151), Expect = 3e-09
Identities = 29/51 (56%), Positives = 39/51 (75%)
Query: 468 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 518
L RGIGIHHSGL ++++E+LF+ G L V+ AT T S+G+NMP +TVVF
Sbjct: 1221 LYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF 1271
>7300033 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1809
Score = 97.4 bits (241), Expect = 1e-19
Identities = 107/412 (25%), Positives = 185/412 (43%), Gaps = 81/412 (19%)
Query: 146 YPFT-LDPFQDTAISCIDRMES-VLVSAHTSAGKTVVAEYAIAQSLRE--KQRVIYTSPI 201
Y FT +P Q C+ ++ VL+ A T +GKT+VAE AI ++L + K +V+Y +P+
Sbjct: 958 YKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPL 1017
Query: 202 KALSNQKYRELLAEF--GDVGL----MTGDITINPDA---GCLVMTTE-----ILRSMLY 247
KAL ++ + F +GL +TGD+T + A L++TT I RS +
Sbjct: 1018 KALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRS--W 1075
Query: 248 RGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL-------LPDKVHYVFLSATIPNAM 300
+ E ++ V+ ++ DE+H + ++RG V E + + V LS + NA
Sbjct: 1076 QTREYVQHVSLIVIDEIHLL-GEDRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQ 1134
Query: 301 EFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASI 360
+ A W+ I+ + RP PLQ +H+ F +++ MA++
Sbjct: 1135 DLANWL-GINKMGLYNFKPSVRPVPLQ----------VHI-----NGFPGKHYCPRMATM 1178
Query: 361 SNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCE 420
+ T + T + P IVF S+R
Sbjct: 1179 NRPTFQAIRTYS--------------------------------PCEPTIVFVSSRRQTR 1206
Query: 421 ELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLL 480
AL + K+ L I ++ I+L+ ++ RE +++ L GIG+HH+GL
Sbjct: 1207 LTALDLITFVAGESNPKQFL-HIPEDEIELILQNIRE----QNLKFCLAFGIGLHHAGLQ 1261
Query: 481 PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 532
++ +E LF +++L AT T + G+N+PA VV +DG+ ++V
Sbjct: 1262 EQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVIKGTEYFDGKVKKYV 1313
>Hs18548973 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 731
Score = 96.3 bits (238), Expect = 2e-19
Identities = 105/409 (25%), Positives = 175/409 (42%), Gaps = 93/409 (22%)
Query: 168 LVSAHTSAGKTVVAEYAIAQSLREKQ------RVIYTSPIKALSNQKYRELLAEFGDVGL 221
++ A T +GKTVV E AI + L E +++Y +PIKAL +Q++ + +FG +GL
Sbjct: 317 VICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGL 376
Query: 222 ----MTGDITIN-----PDAGCLVMTTEILRSML--YRGSEVMREVAWVIFDEVHYMRDK 270
+TGD ++ A ++ T E SM +R + +++ V + DEVH ++D+
Sbjct: 377 NCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDE 436
Query: 271 ERGVVWEETIILLPD---------------KVHYVFLSATIPNAMEFAEWICRIHSQPCH 315
RG E + + + +V +SATIPNA + AEW
Sbjct: 437 NRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEW---------- 486
Query: 316 IVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASI---SNQTGDDVH-TI 371
L + L +DE + R QK + SNQT T+
Sbjct: 487 --------------LSDGERPAVCLKMDE--SHRPVKLQKVVLGFPCSSNQTEFKFDLTL 530
Query: 372 NGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 431
N + I +++M +K P +VF +++ ++ A + K
Sbjct: 531 NYK-------------------IASVIQMYSDQK--PTLVFCATRKGVQQAASVLVK--- 566
Query: 432 NSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 491
+ K +T K + S R+ + +L+ G HH+G+ ++V+E F
Sbjct: 567 ---DAKFIMTVEQKQRLQKYAYSVRD----SKLRDILKDGAAYHHAGMELSDRKVVEGAF 619
Query: 492 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQM 540
G L VLF T T ++G+N+PA VV S + G F S + +QM
Sbjct: 620 TVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQM 668
>YGL251c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1187
Score = 94.4 bits (233), Expect = 9e-19
Identities = 105/476 (22%), Positives = 197/476 (41%), Gaps = 85/476 (17%)
Query: 159 SCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQ------RVIYTSPIKALSNQKYREL 212
S + E+ ++S+ T +GKTV+ E AI + ++E ++IY +P K+L + Y+
Sbjct: 149 SIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNW 208
Query: 213 LAEFGD--VGLMTGDITINPDAGC----LVMTTEILRSMLYRG----SEVMREVAWVIFD 262
F + VG++T D + +++TT +L R S + V V+ D
Sbjct: 209 FPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVD 268
Query: 263 EVHYMRDKERGVVWEETIILLP---DKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYT 319
E+H +++K RG E + + + +V LSAT+PN + A W+ + P +I
Sbjct: 269 EIHTIKEK-RGASLEVILTRMNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANI--- 324
Query: 320 DFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQ 379
L DE ++R+ K + S +D +K
Sbjct: 325 --------------------LSFDE--SYRQVQLTKFVYGYSFNCKNDF-------QKDA 355
Query: 380 SYXXXXXXXXXXXXIYKIVRMIWKKKYN-PVIVFSFSKRDCEELALKMSKLDFNSEEEKE 438
Y K++ +I K N PV++F ++ A + S+ +K
Sbjct: 356 IYNS------------KLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKR 403
Query: 439 ALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 498
P K + +++GI HH+G+ + +E F G + +
Sbjct: 404 C----------------NHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINI 447
Query: 499 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSXXXXXXXXXXXXIVIMM 558
L +T T ++G+N+PA V+ + W+ + + S + +QM ++M
Sbjct: 448 LCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIM 507
Query: 559 IDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLENSFFQFQN 614
D KM+ Q + ++ G D L+S+ HL N+I +L + + +E + +N
Sbjct: 508 TDSKMK-QTYENLIHG-TDVLESSLHL--NLIEHLAAETSLETVYSIETAVNWLRN 559
>CE21971 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2145
Score = 90.9 bits (224), Expect = 1e-17
Identities = 97/407 (23%), Positives = 178/407 (42%), Gaps = 83/407 (20%)
Query: 159 SCIDRMESVLVSAHTSAGKTVVAEYAIAQSLR-----------EKQRVIYTSPIKALSNQ 207
S + E +L+ A T AGKT VA + Q + ++ +++Y +P+K+L +
Sbjct: 485 SALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQE 544
Query: 208 ---KYRELLAEFG-DVGLMTGDITINPD----AGCLVMTTEILRSMLYRGSE--VMREVA 257
+ + LA FG VG MTGD ++ + +V T E + +G E + V
Sbjct: 545 MVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVR 604
Query: 258 WVIFDEVHYMRDKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFAEWICRIH 310
+I DE+H + D +RG V E ++ D+ V LSAT+PN + A ++ R+
Sbjct: 605 LLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFL-RVK 662
Query: 311 SQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHT 370
+ H +RP PL+ ++ V EK K +++ D +
Sbjct: 663 PEHLHFFDNSYRPVPLEQQ---------YIGVTEKKAL------KRFQAMNEVVYDKIME 707
Query: 371 INGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 430
G+ + V+VF S+++ K +K
Sbjct: 708 HAGKSQ--------------------------------VLVFVHSRKE----TAKTAKAI 731
Query: 431 FNSEEEKEALTKIFK--NAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 488
++ EK+ L+ + +A + ++ E + + LL G IHH+G+ + + ++E
Sbjct: 732 RDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVE 791
Query: 489 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 535
LF + ++VLF+T T + G+N+PA TV+ + ++ ++ RW G
Sbjct: 792 DLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELG 838
>SPBC13G1.10c [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1935
Score = 85.1 bits (209), Expect = 5e-16
Identities = 97/417 (23%), Positives = 176/417 (41%), Gaps = 105/417 (25%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSL-------------------REKQRVIYTSPIKALS 205
E++L+ A T AGKT VA A+ Q++ R+ +++Y +P+KAL+
Sbjct: 294 ENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALA 353
Query: 206 NQKYRELLAEFGDVGL----MTGDITIN----PDAGCLVMTTE---ILRSMLYRGSEVMR 254
+ ++ +GL +TGD+ + + LV T E ++ +++
Sbjct: 354 AEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAE 413
Query: 255 EVAWVIFDEVHYMRDKERGVVWEETII-------LLPDKVHYVFLSATIPNAMEFAEWIC 307
+V VI DEVH + D ERG V E + + V LSAT+PN ++ A+++
Sbjct: 414 KVRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLG 472
Query: 308 RIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDD 367
+ + FRP P++ + A G I N D+
Sbjct: 473 VNRYKGLFYFSSAFRPCPIEQHFIGAKGS---------------------PKIVNSNIDE 511
Query: 368 VHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMS 427
K++++I ++ + V++F S+++ A K+
Sbjct: 512 ------------------------ACFDKVLKLI--QEGHQVMIFVHSRKETINSAKKLR 545
Query: 428 KLDF---------NSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSG 478
+ F NS+ EK +L + D+ ++EL + L + +GIH++G
Sbjct: 546 EQFFHEGEADLLDNSQHEKYSLAQ-----RDVSKSKNKELKE------LFKYSMGIHNAG 594
Query: 479 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 535
+L + + E LF G LK+L T T + G+N+PA V+ + +D Q+ +V G
Sbjct: 595 MLRSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLG 651
Score = 70.5 bits (171), Expect = 1e-11
Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 83/386 (21%)
Query: 166 SVLVSAHTSAGKTVVAEYAIAQSLRE--KQRVIYTSPIKALSNQKYRE---LLAEFGDVG 220
++ V A T +GKT+ AE A ++L K +V+Y +P+KAL ++ ++ L E +
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGIS 1211
Query: 221 L--MTGDITINPD------AGCLVMTTE----ILRSMLYRGSEVMREVAWVIFDEVHYMR 268
+ +TGD NPD A ++ T E I RS ++ + +++V+ +I DE+H +
Sbjct: 1212 MIELTGD--TNPDVKAVTNANIIITTPEKWDGITRS--WKSRKYVQDVSLIILDEIHLL- 1266
Query: 269 DKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDF 321
+RG V E + + KV + LS + NA + A W+ I + ++
Sbjct: 1267 GSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWL-NIRDGLFNFRHS-V 1324
Query: 322 RPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQSY 381
RP PL+ Y+ DG F + M S++ + T
Sbjct: 1325 RPVPLEIYI-----DG----------FPGRAYCPRMMSMNKPAFQAIKT----------- 1358
Query: 382 XXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEKEALT 441
PV++F S+R L K E+
Sbjct: 1359 ---------------------HSPTQPVLIFVSSRRQ-TRLTAKDLIAFCGLEDNPRRFL 1396
Query: 442 KIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFA 501
+ + ++++ S+ E +K LP GI +HH+GL +++ E LF +++L A
Sbjct: 1397 YMDEEELEMI-VSEVEDKSLKLALPF---GIALHHAGLTENDRKISEELFVNNKVQILIA 1452
Query: 502 TETFSIGLNMPAKTVVFTSVRKWDGQ 527
T T + G+N PA V+ +D +
Sbjct: 1453 TSTLAWGVNTPAHLVIVKGTEYYDAK 1478
>At4g32700 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1548
Score = 84.7 bits (208), Expect = 7e-16
Identities = 92/355 (25%), Positives = 149/355 (41%), Gaps = 78/355 (21%)
Query: 224 GDITINPDAGCLVMTTEILRSMLYRGSEVMR--EVAWVIFDEVHYMRDKERGVVWEETII 281
G T+ D V T E S++ R E R E+ ++ DE+H + D+ RG + E +
Sbjct: 48 GGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLT 107
Query: 282 LL-----------------------PDKVH---YVFLSATIPNAMEFAEWICRIHSQPCH 315
L D H V +SAT+PN A+W+ +
Sbjct: 108 KLRYAAGEGSSESSSGESSGTSSGKADPAHGLQIVGMSATMPNVGAVADWLQVSKTNHNL 167
Query: 316 IVY-----TDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHT 370
VY T+FRP PL+ Y+ K ++I N+ + V T
Sbjct: 168 CVYAALYQTEFRPVPLEEYI------------------------KVGSTIYNKKMEVVRT 203
Query: 371 INGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 430
I G I ++ + ++ N V++F S++ CE A +SKL
Sbjct: 204 IPKAADMGGK---------DPDHIVELCNEVVQEG-NSVLIFCSSRKGCESTARHISKLI 253
Query: 431 FNSEEEKEALTKIF---KNAIDLLPESDREL-PQIKHILPLLRRGIGIHHSGLLPILKEV 486
N + F ++AID L S + P ++ LP G+ HH+GL +E+
Sbjct: 254 KNVPVNVDGENSEFMDIRSAIDALRRSPSGVDPVLEETLP---SGVAYHHAGLTVEEREI 310
Query: 487 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMS 541
+E +++G ++VL AT T + G+N+PA+ V+F + G+ F + G Y QMS
Sbjct: 311 VETCYRKGLVRVLTATSTLAAGVNLPARRVIFR--QPMIGRDF--IDGTRYKQMS 361
>At5g61140 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 2137
Score = 82.8 bits (203), Expect = 3e-15
Identities = 94/396 (23%), Positives = 166/396 (41%), Gaps = 80/396 (20%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSLREKQR----------VIYTSPIKALSNQKYRELLA 214
E++LV A T AGKT +A ++ +++ R ++Y +P+KAL+ +
Sbjct: 524 ENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSR 583
Query: 215 EFGDVGL----MTGDITINP---DAGCLVMTTEILRSMLYRGSEVMRE---VAWVIFDEV 264
+ + +TGD+ + + +++TT ++ R S M V +I DEV
Sbjct: 584 RLAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIIDEV 643
Query: 265 HYMRDKERGVVWEETIILLPDKVH-------YVFLSATIPNAMEFAEWICRIHSQPCHIV 317
H + D +RG V E + +V V LSAT+P+ ++ A+++ R+++
Sbjct: 644 HLLND-DRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFL-RVNTDTGLFY 701
Query: 318 Y-TDFRPTPL-QHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRG 375
+ + +RP PL Q Y+ G H E ++K + SI
Sbjct: 702 FDSSYRPVPLAQQYI----GITEHNFAARNELLNEICYKKVVDSI--------------- 742
Query: 376 KKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEE 435
K+ + ++F S++D + A K+ L E
Sbjct: 743 ----------------------------KQGHQAMIFVHSRKDTSKTAEKLVDLA-RQYE 773
Query: 436 EKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF 495
+ T L+ + D + K ++ G GIHH+G+L + + E LF +G
Sbjct: 774 TLDLFTNETHPQFQLM-KKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLTERLFSDGL 832
Query: 496 LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW 531
LKVL T T + G+N+PA TVV + +D + W
Sbjct: 833 LKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGW 868
Score = 52.0 bits (123), Expect = 5e-06
Identities = 48/161 (29%), Positives = 83/161 (50%), Gaps = 24/161 (14%)
Query: 166 SVLVSAHTSAGKTVVAEYAIAQ--SLREKQRVIYTSPIKALSNQKY----RELLAEFG-D 218
+VLV A T +GKT+ AE A+ + S + +V+Y +P+KA+ ++ + L+A G +
Sbjct: 1362 NVLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVAPLGKE 1421
Query: 219 VGLMTGDITINPDAGCLVMTTEILR--------SMLYRGSEVMREVAWVIFDEVHYMRDK 270
+ MTGD T PD L+ I+ S + +++V VI DE+H +
Sbjct: 1422 MVEMTGDYT--PDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVGLVILDEIHLL-GA 1478
Query: 271 ERGVVWEE-----TIILLPDKVHYVFLSATIPNAMEFAEWI 306
+RG + E + ++ K Y+F SA + NA + A+W+
Sbjct: 1479 DRGPILELYHDTCNVSMVLVKSLYLFGSA-LANAGDLADWL 1518
>Hs16418479 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2724
Score = 82.4 bits (202), Expect = 3e-15
Identities = 98/396 (24%), Positives = 172/396 (42%), Gaps = 87/396 (21%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSLRE-KQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 223
++++ SA TSAGKT+VAE I + + E +++ ++ P +++ +K L + F +VG+
Sbjct: 242 KNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKV 301
Query: 224 ----GDITINPDAGCL---VMTTEILRSMLYRGSE--VMREVAWVIFDEVHYMRDKERGV 274
G + + L V T E ++ R E M + V+ DE+H + D RG
Sbjct: 302 DGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGY 361
Query: 275 VWE------------------ETIILLPDKVHYVFLSATIPNAMEFAEWICRIHSQPCHI 316
+ E + L + V V +SAT+PN A W+ +
Sbjct: 362 LLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWL------NAEL 415
Query: 317 VYTDFRPTPLQHYL---FPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTING 373
+TDFRP PL + + + LV + + + + + + S+ +T D H+
Sbjct: 416 YHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHS--- 472
Query: 374 RGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN- 432
V++F SK+ CE+LA +++ +N
Sbjct: 473 -----------------------------------VLLFCPSKKWCEKLADIIAREFYNL 497
Query: 433 -SEEEKEALTK------IFKNAIDLLPESD--RELPQ-IKHIL-PLLRRGIGIHHSGLLP 481
+ E E L K + +LL D R LP + +L + G+ HH+GL
Sbjct: 498 HHQAEGEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTF 557
Query: 482 ILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 517
+++IE F++G ++VL AT T S G+N+PA+ V+
Sbjct: 558 EERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI 593
>YGR271w [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1967
Score = 82.0 bits (201), Expect = 4e-15
Identities = 97/407 (23%), Positives = 177/407 (42%), Gaps = 88/407 (21%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSLREKQ---------------RVIYTSPIKALSNQ-- 207
E++L+ A T AGKT +A I ++++ +VIY +P+KAL+ +
Sbjct: 304 ENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIV 363
Query: 208 -KYRELLAEFG-DVGLMTGDITINPD---AGCLVMTT----EILRSMLYRGSEVMREVAW 258
K+ + LA F V +TGD+ + A +++TT +++ ++++ +V
Sbjct: 364 DKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKL 423
Query: 259 VIFDEVHYMRDKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFAEWICRIHS 311
+I DEVH + + +RG V E + + + LSAT+PN M+ A+++
Sbjct: 424 LIIDEVHLLHE-DRGPVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQ 482
Query: 312 QPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTI 371
FRP PL+ L G KA + S + D V
Sbjct: 483 IGMFYFDQSFRPKPLEQQLLGCRG-------------------KAGSRQSKENIDKV--- 520
Query: 372 NGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKL-D 430
K+ MI ++ V+VF S+++ + A KL +
Sbjct: 521 ---------------------AYDKLSEMI--QRGYQVMVFVHSRKETVKSARNFIKLAE 557
Query: 431 FNSEEEKEALTKIFKN--AIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE 488
N E + A I K+ + L+ D+++ +I + G GIHH+G+ + + E
Sbjct: 558 SNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEI------FQFGFGIHHAGMARSDRNLTE 611
Query: 489 ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 535
+F++G +KVL T T + G+N+PA V+ + +D ++ ++ G
Sbjct: 612 KMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLG 658
Score = 57.0 bits (136), Expect = 2e-07
Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 24/207 (11%)
Query: 146 YPFT-LDPFQD-TAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLR--EKQRVIYTSPI 201
YPF +P Q T + + E+ V + T +GKT+VAE AI + + ++++Y +P+
Sbjct: 1135 YPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPM 1194
Query: 202 KALSNQKY----RELLAEFGD-VGLMTGDITINP----DAGCLVMTTEILR--SMLYRGS 250
KAL ++ +++ GD V +TGD +P DA ++ T E S ++
Sbjct: 1195 KALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTR 1254
Query: 251 EVMREVAWVIFDEVHYMRDKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFA 303
+ +++V+ +I DE+H + +RG + E + + V + +S + NA + A
Sbjct: 1255 KFVQDVSLIIMDEIHLLA-SDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMA 1313
Query: 304 EWICRIHSQPCHIVYTDFRPTPLQHYL 330
W+ + + + RP PL+ Y+
Sbjct: 1314 GWL-GVKDHGLYNFPSSVRPVPLKMYI 1339
>Hs14747366 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1866
Score = 81.3 bits (199), Expect = 8e-15
Identities = 100/394 (25%), Positives = 166/394 (41%), Gaps = 88/394 (22%)
Query: 166 SVLVSAHTSAGKTVVAEYAIAQSLRE--KQRVIYTSPIKALSNQKYRELLAEFGD----- 218
+VL+ A T +GKTV AE AI + + + +Y +P+KAL ++ + +
Sbjct: 1008 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKK 1067
Query: 219 VGLMTGDITINPD------AGCLVMTTE----ILRSMLYRGSEVMREVAWVIFDEVHYMR 268
V +TGD+T PD A +V T E + RS ++ +++V +I DE+H +
Sbjct: 1068 VIELTGDVT--PDMKSIAKADLIVTTPEKWDGVSRS--WQNRNYVQQVTILIIDEIHLLG 1123
Query: 269 DKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDF 321
+ ERG V E + V V LS + NA + A+W+ I
Sbjct: 1124 E-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIKQMGLFNFRPSV 1181
Query: 322 RPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQSY 381
RP PL+ H G F +++ MAS++
Sbjct: 1182 RPVPLE-----VHIQG----------FPGQHYCPRMASMNKPA----------------- 1209
Query: 382 XXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEKEALT 441
++ +R K PV++F S+R AL++ E+ K+ L
Sbjct: 1210 -------------FQAIRSHSPAK--PVLIFVSSRRQTRLTALELIAFLATEEDPKQWLN 1254
Query: 442 ---KIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 498
+ +N I + +S+ +L L GIG+HH+GL ++ +E LF ++V
Sbjct: 1255 MDEREMENIIATVRDSNLKLT--------LAFGIGMHHAGLHERDRKTVEELFVNCKVQV 1306
Query: 499 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 532
L AT T + G+N PA V+ +DG+ R+V
Sbjct: 1307 LIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYV 1340
>CE29195 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1714
Score = 78.6 bits (192), Expect = 5e-14
Identities = 57/180 (31%), Positives = 89/180 (48%), Gaps = 20/180 (11%)
Query: 144 RTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQR--VIYTSPI 201
R F D +Q + +DR S L+ A TSAGKT V+ Y I + LR V+Y +P
Sbjct: 779 RVSGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPS 838
Query: 202 KALSNQKYRELLAEFGD---------VGLMTGDITINPDAGCLVMTT------EILRSML 246
KAL NQ + A F + G +T + + N C V+ T E++ S
Sbjct: 839 KALINQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNA-MQCQVLITVPECLQELMLSRT 897
Query: 247 YRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWI 306
+ + + +V+FDEVH + E +WE+ ++L+ + ++ LSATI NA + EW+
Sbjct: 898 PAVQKFVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLHEWL 955
Score = 66.6 bits (161), Expect = 2e-10
Identities = 36/106 (33%), Positives = 58/106 (53%), Gaps = 5/106 (4%)
Query: 418 DCEELALKMSKLD-----FNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGI 472
+ + LA+K +KL F I+ ++ + + + + +L L RGI
Sbjct: 1223 EMDVLAMKKAKLARALERFKLRGRNGGDPDIYAKMVERMQKGAKTRESTQVLLKLFERGI 1282
Query: 473 GIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 518
G HH+GL + + +E+LF+ G L VLF+T T S+G+NMP KTV+F
Sbjct: 1283 GYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF 1328
>At1g20960 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2171
Score = 78.6 bits (192), Expect = 5e-14
Identities = 93/413 (22%), Positives = 170/413 (40%), Gaps = 95/413 (23%)
Query: 155 DTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQ-----------RVIYTSPIKA 203
DTA+ + E++L+ A T AGKT VA I Q L + +++Y +P+KA
Sbjct: 514 DTALF---KAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKA 570
Query: 204 LSNQKYRELLAEFGDVGLMTGDITINPD-AGCLVMTTEILRSMLYRGSEVMRE------- 255
L + L D G++ +++ + G + T+I+ + + + R+
Sbjct: 571 LVAEVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYT 630
Query: 256 --VAWVIFDEVHYMRDKERGVVWEETII-------LLPDKVHYVFLSATIPNAMEFAEWI 306
V +I DE+H + D RG V E + + + V LSAT+PN + A ++
Sbjct: 631 QLVRLLIIDEIHLLHDN-RGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFL 689
Query: 307 CRIHSQPCHIVYTDFRPTPL-QHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTG 365
+ +RP PL Q Y+ G + + + +QK +A
Sbjct: 690 RVDLKKGLFKFDRSYRPVPLHQQYI----GISVKKPLQRFQLMNDLCYQKVLA------- 738
Query: 366 DDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALK 425
G GK + V++F S+++ + A
Sbjct: 739 -------GAGK------------------------------HQVLIFVHSRKETSKTARA 761
Query: 426 MSKLDFNSE------EEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGL 479
+ ++ +E + + D++ SD +K ILP G IHH+GL
Sbjct: 762 IRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSD-----LKDILPY---GFAIHHAGL 813
Query: 480 LPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 532
+E++E LF +G ++VL +T T + G+N+PA TV+ + ++ ++ W+
Sbjct: 814 SRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWM 866
Score = 67.4 bits (163), Expect = 1e-10
Identities = 98/427 (22%), Positives = 181/427 (41%), Gaps = 90/427 (21%)
Query: 127 PNYDYKPIGDHVRTNEARTYPFTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIA 186
PNY+ D N +T FT+ + ++VLV+A T +GKT+ AE+AI
Sbjct: 1339 PNYEIL-YQDFKHFNPVQTQVFTV---------LYNTNDNVLVAAPTGSGKTICAEFAIL 1388
Query: 187 QSLRE----KQRVIYTSPIKALSNQKYRELLAEFG-DVGL----MTGDITIN---PDAGC 234
++ E RV+Y +P++A++ +++R +FG +GL +TG+ ++ + G
Sbjct: 1389 RNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQ 1448
Query: 235 LVMTTE---ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP------- 284
++++T S ++ + +++V+ I DE+H + + G V E + +
Sbjct: 1449 IIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLI-GGQHGPVLEVIVSRMRYISSQVI 1507
Query: 285 DKVHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDE 344
+K+ V LS ++ NA + EWI S RP PL+ H G+ +
Sbjct: 1508 NKIRIVALSTSLANAKDLGEWI-GASSHGLFNFPPGVRPVPLE-----IHIQGVDI---- 1557
Query: 345 KGTFREENFQKAMASISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKK 404
+F+ M +++ T Y + K
Sbjct: 1558 ------SSFEARMQAMTKPT------------------------------YTAIVQHAKN 1581
Query: 405 KYNPVIVFSFSKRDCEELALKM---SKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQI 461
K P IVF +++ A+ + S +D N + L K+ +D E RE
Sbjct: 1582 K-KPAIVFVPTRKHVRLTAVDLMAYSHMD-NPQSPDFLLGKL--EELDPFVEQIRE---- 1633
Query: 462 KHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 521
+ + L GIG H GL + +E++ LF+ G ++V + + G + A VV
Sbjct: 1634 ETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGT 1693
Query: 522 RKWDGQQ 528
+ +DG++
Sbjct: 1694 QYYDGRE 1700
>YER172c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2163
Score = 77.4 bits (189), Expect = 1e-13
Identities = 96/426 (22%), Positives = 174/426 (40%), Gaps = 86/426 (20%)
Query: 149 TLDPFQDTAI-SCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQ------------RV 195
+L+P Q + + ++L+ A T +GKT +A + ++L ++
Sbjct: 498 SLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKI 557
Query: 196 IYTSPIKALSNQKYRELLAEFGDVGL----MTGDITINP---DAGCLVMTTEILRSMLYR 248
+Y +P+KAL ++ RE +G+ +TGD ++ D ++++T + R
Sbjct: 558 VYIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTR 617
Query: 249 GSE---VMREVAWVIFDEVHYMRDKERGVVWEETIILL-------PDKVHYVFLSATIPN 298
S ++ V +I DE+H + D +RG V E + + + LSAT+PN
Sbjct: 618 NSNNLAIVELVRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPN 676
Query: 299 AMEFAEWICRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMA 358
+ ++ R+ + + FRP PL GI +E N K +
Sbjct: 677 YEDVGRFL-RVPKEGLFYFDSSFRPCPLSQQFC-----GI----------KERNSLKKLK 720
Query: 359 SISNQTGDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRD 418
++++ + V G N +IVF S+++
Sbjct: 721 AMNDACYEKVLESINEG-------------------------------NQIIVFVHSRKE 749
Query: 419 CEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDREL--PQIKHILPLLRRGIGIHH 476
A + K F E LTK + +L + P ++ L+ GIG HH
Sbjct: 750 TSRTATWL-KNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRK---LIESGIGTHH 805
Query: 477 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSG 534
+GL + + E LF +G L+VL T T + G+N+PA TV+ + ++ W +S
Sbjct: 806 AGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSP 865
Query: 535 GEYIQM 540
+ +QM
Sbjct: 866 QDVLQM 871
>CE27019 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 923
Score = 75.5 bits (184), Expect = 4e-13
Identities = 90/392 (22%), Positives = 161/392 (40%), Gaps = 68/392 (17%)
Query: 150 LDPFQDTAISCIDRM-----ESVLVSAHTSAGKTVVAEYA-IAQSLREKQRVIYTSPIKA 203
LD F D C+ E+ ++S T AGKT++AE + +++ K+ I P A
Sbjct: 165 LDKFYDWQQECLSDKRLLDGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVA 224
Query: 204 LSNQKYRELLAEFGDV-GLMTGDITINPD----------AGCLVMTTE----ILRSMLYR 248
+ +K LA F D G+ + N V T E ++ S++ +
Sbjct: 225 IVQEKI-SALAPFEDAFGINIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQ 283
Query: 249 GSEVMREVAWVIFDEVHYMRDKERGVVWEETI--ILLPDKVHYVFLSATIPNAMEFAEWI 306
G + V V+ DE+H + D RG + E+ + L V +SAT+PN +
Sbjct: 284 GQ--LDRVGMVVVDELHMIGDGGRGAILEQLLAKFLYKGTGQIVGMSATLPNIDDLK--- 338
Query: 307 CRIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGD 366
+ + T+FRP L ++ G +H V ++ GD
Sbjct: 339 ---FALRAFVYSTNFRPVELTEFV--KIGQTMHQV--------------------SENGD 373
Query: 367 DVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKM 426
+N G + + K++ N ++F +K++CE +A+ +
Sbjct: 374 ----LNPAGDLPTNNLKSTDPDGICQLLAKLIPK------NSAVIFCPNKKNCENVAVLI 423
Query: 427 SK-LDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKE 485
+K L + + K A + F + L D + + + + G+ HHSGL ++
Sbjct: 424 AKTLPAHIRQAKRAESDAFLQSY-LSDNDDERMDAV--LKQCILSGVAYHHSGLTQDERK 480
Query: 486 VIEILFQEGFLKVLFATETFSIGLNMPAKTVV 517
+E F EG + V+ AT T + G+N+P + V+
Sbjct: 481 CVEAAFMEGLIYVVCATSTLAAGVNLPVRRVI 512
>Hs22042312 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2136
Score = 73.6 bits (179), Expect = 2e-12
Identities = 105/456 (23%), Positives = 184/456 (40%), Gaps = 88/456 (19%)
Query: 108 ESDGKVKLRHQVRHQVALPPN--YDYKPIGDHVRTNEA------RTYPFTLDPFQDTAIS 159
E+ V RH + + PP D +P+ N A +PF +P Q +
Sbjct: 1279 ETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFN 1337
Query: 160 CI-DRMESVLVSAHTSAGKTVVAEYAIAQSLREKQ--RVIYTSPIKALSNQKYRELLAEF 216
+ + ++V V A T +GKT+ AE+AI + L + R +Y +P++AL+ Q Y + +F
Sbjct: 1338 TVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKF 1397
Query: 217 GD-----VGLMTG----DITINPDAGCLVMTTE--ILRSMLYRGSEVMREVAWVIFDEVH 265
D V L+TG D+ + ++ T E + S ++ + ++ + + DEVH
Sbjct: 1398 QDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1457
Query: 266 YMRDKERGVVWEETI-------ILLPDKVHYVFLSATIPNAMEFAEWI-CRIHSQPCHIV 317
+ E G V E + + V LS+++ NA + A W+ C S
Sbjct: 1458 LI-GGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATS--TFNF 1514
Query: 318 YTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKK 377
+ + RP PL+ H G F + Q + S++ H I K
Sbjct: 1515 HPNVRPVPLE-----LHIQG----------FNISHTQTRLLSMAKPV---YHAITKHSPK 1556
Query: 378 GQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEK 437
PVIVF S++ A+ + + +
Sbjct: 1557 -----------------------------KPVIVFVPSRKQTRLTAIDILTTCAADIQRQ 1587
Query: 438 EALTKIFKNAIDLLPE-SDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFL 496
L K+ I L + SD L + L G+G H GL P+ + ++E LF G +
Sbjct: 1588 RFLHCTEKDLIPYLEKLSDSTLKE------TLLNGVGYLHEGLSPMERRLVEQLFSSGAI 1641
Query: 497 KVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 532
+V+ A+ + G+N+ A V+ + ++G+ +V
Sbjct: 1642 QVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1677
Score = 72.8 bits (177), Expect = 3e-12
Identities = 95/408 (23%), Positives = 172/408 (41%), Gaps = 84/408 (20%)
Query: 159 SCIDRMESVLVSAHTSAGKTVVAEYAIAQSLR-----------EKQRVIYTSPIKALSNQ 207
+ ++ E++L+ A T AGKT VA + + + + ++IY +P+++L +
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 208 ---KYRELLAEFG-DVGLMTGDITINPD----AGCLVMTTEILRSMLYRGSE--VMREVA 257
+ + LA +G V +TGD + + +V T E + +G E + V
Sbjct: 551 MVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVR 610
Query: 258 WVIFDEVHYMRDKERGVVWE-------ETIILLPDKVHYVFLSATIPNAMEFAEWICRIH 310
+I DE+H + D +RG V E I + + V + LSAT+PN + A ++
Sbjct: 611 LIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP 669
Query: 311 SQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHT 370
++ FRP PL+ ++ + EK + FQ I N+
Sbjct: 670 AKGLFYFDNSFRPVPLEQ---------TYVGITEKKAIKR--FQ-----IMNEI------ 707
Query: 371 INGRGKKGQSYXXXXXXXXXXXXIY-KIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKL 429
+Y KI+ K N V+VF S+++ + A + +
Sbjct: 708 -----------------------VYEKIMEHAGK---NQVLVFVHSRKETGKTARAIRDM 741
Query: 430 DFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHI--LPLLRRGIGIHHSGLLPILKEVI 487
EK+ L + E Q K++ LL G IHH+G+ + + ++
Sbjct: 742 CL----EKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 797
Query: 488 EILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 535
E LF + ++VL +T T + G+N+PA TV+ + + ++ RW G
Sbjct: 798 EDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELG 845
>SPAC9.03c [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2176
Score = 73.2 bits (178), Expect = 2e-12
Identities = 98/411 (23%), Positives = 167/411 (39%), Gaps = 90/411 (21%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSLREKQR-----------VIYTSPIKALSNQ---KYR 210
E++L+ A T AGKT VA I L++ R ++Y +P+KAL + +
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFS 595
Query: 211 ELLAEFG-DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGSEV--MREVAWVIFDE 263
+ L + V +TGD + + +V T E + + +++ + V VI DE
Sbjct: 596 KRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDE 655
Query: 264 VHYMRDKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFAEWICRIHSQPCH- 315
VH + D ERG V E + + ++V V LSAT+PN + A + +H P
Sbjct: 656 VHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASF---LHVDPKKG 711
Query: 316 IVYTD--FRPTPLQHYLFPAHGDGIHLVVDEKGTFR--EENFQKAMASISNQTGDDVHTI 371
+ Y D +RP PL+ + + EK F+ + + + G + I
Sbjct: 712 LFYFDSTYRPCPLKQEF---------IGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLI 762
Query: 372 NGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 431
+K + K R I K + + D + ++ D
Sbjct: 763 FVHSRKETA---------------KTARFIRDKALEEETIGHLLRSDAASREILRAEADS 807
Query: 432 NSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 491
S+E N DLLP G IHH+G+ ++ E LF
Sbjct: 808 TSDE----------NLKDLLP-----------------YGFAIHHAGMRREDRQTSEDLF 840
Query: 492 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQM 540
+G ++VL +T T + G+N+PA TV+ + + ++ W +S + +QM
Sbjct: 841 ADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQM 891
>ECU05g0940 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 1337
Score = 72.8 bits (177), Expect = 3e-12
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 22/205 (10%)
Query: 148 FTLDPFQDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQR--VIYTSPIKALS 205
F D +Q + +D+ +S ++SA TSAGKT + YAI + LRE VI+ P KAL
Sbjct: 514 FKPDEWQVRLLDLVDQNKSAVISAPTSAGKTFICFYAIEKVLRESDTDVVIFCLPTKALV 573
Query: 206 NQKYRELLAEFGD--------VGLMTGDITINP-DAGCLVMTTEILRSMLYRGSE-VMRE 255
NQ ++ A F G + + +I P + L++ +L S+L + +
Sbjct: 574 NQVSADIYARFTPKVNSKTFLQGSLMKEFSIAPWNCQVLIVIPSLLESVLNTPPKGFIER 633
Query: 256 VAWVIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWICRIH---SQ 312
+ ++I DEVH + +E G+ E + L P + + LSAT+ N F W+ +I +
Sbjct: 634 IRYIIVDEVHKIGSEEMGIPIERIVHLSPCPM--LVLSATLGNIEGFYGWMKKIEREKGR 691
Query: 313 PCHIV-----YTDFRPTPLQHYLFP 332
C +V Y + +P H P
Sbjct: 692 DCELVSYGERYCELKPYVYSHSFSP 716
Score = 62.0 bits (149), Expect = 5e-09
Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
Query: 431 FNSEEEKEALTKIFKNAIDLLP--ESDRELPQIKH----ILPLLRRGIGIHHSGLLPILK 484
F +K+ + F + + L E + E IK+ + +L RG+G+HH+ + +
Sbjct: 921 FQMRNDKKNIKYTFLDPLTKLTDYELEEETKFIKNTDFEFIDMLYRGMGVHHAHMNRKYR 980
Query: 485 EVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 518
++EILF++ L+VLFATET ++G+NMP +TVVF
Sbjct: 981 SLVEILFRQKHLQVLFATETLALGINMPCRTVVF 1014
>At2g42270 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 2172
Score = 72.0 bits (175), Expect = 5e-12
Identities = 122/569 (21%), Positives = 222/569 (38%), Gaps = 127/569 (22%)
Query: 163 RMESVLVSAHTSAGKTVVAEYAIAQSL-----------REKQRVIYTSPIKALSNQKYRE 211
+ +++L+ A T AGKT VA I L +++Y +P+KAL +
Sbjct: 520 KADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDS 579
Query: 212 LLAEFGDVGLMTGDITINPD-AGCLVMTTEILRSMLYRGSEVMRE---------VAWVIF 261
L D G+ +++ + G + T+I+ + + + R+ V +I
Sbjct: 580 LSQRLKDFGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLII 639
Query: 262 DEVHYMRDKERGVVWEETIILL-------PDKVHYVFLSATIPNAMEFAEWICRIHSQPC 314
DE+H + D RG V E + + + V LSAT+PN + A ++
Sbjct: 640 DEIHLL-DDNRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGL 698
Query: 315 HIVYTDFRPTPL-QHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTING 373
I +RP PL Q Y+ GI++ K R FQ M I Q
Sbjct: 699 FIFDRSYRPVPLGQQYI------GINV----KKPLRR--FQ-LMNDICYQ---------- 735
Query: 374 RGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 433
K+V + K + V++F S+++ + A + +
Sbjct: 736 ----------------------KVVAVAGKHQ---VLIFVHSRKETAKTARAIRDTAMAN 770
Query: 434 E------EEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 487
+ +E +I K LL +D +K +LP G IHH+GL +E++
Sbjct: 771 DTLSRFLKEDSQSREILKCLAGLLKNND-----LKELLPY---GFAIHHAGLTRTDREIV 822
Query: 488 EILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV--------------S 533
E F+ G L+VL +T T + G+N+PA TV+ + ++ ++ W+
Sbjct: 823 ENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAG 882
Query: 534 GGEYIQMSXXXXXXXXXXXXIVIMMIDE----------KMEPQVAKGMVKGQADRLDSAF 583
+Y Q + +++E K+ Q+ +V G A
Sbjct: 883 RPQYDQQGEGIIITGYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREAC 942
Query: 584 H-LGYNMILNLM----RVEGISPEFMLENSFFQFQNA----ISVPVMEK-KVAELTSVLE 633
H LGY + M + G+SP+ + ++ + + A + +++K + +
Sbjct: 943 HWLGYTYLYVRMVRNPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSG 1002
Query: 634 SIKVDDEPAVKEYYEI-RKTLDGYNEDVR 661
+V D + YY I T+ YNE+++
Sbjct: 1003 HFQVTDLGRIASYYYISHGTIAAYNENLK 1031
Score = 68.9 bits (167), Expect = 4e-11
Identities = 88/393 (22%), Positives = 178/393 (44%), Gaps = 88/393 (22%)
Query: 165 ESVLVSAHTSAGKTVVAEYAIAQSLRE----KQRVIYTSPIKALSNQKYRELLAEFG-DV 219
++V+V+A T +GKT+ AE+AI ++ E RV+Y +P++A++ +++R+ +FG +
Sbjct: 1368 DNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGL 1427
Query: 220 GL----MTGDITIN---PDAGCLVMTTE---ILRSMLYRGSEVMREVAWVIFDEVHYMRD 269
GL +TG+ ++ + G ++++T S ++ + +++V+ I DE+H +
Sbjct: 1428 GLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGG 1487
Query: 270 KERGVVWEETII--------LLPDKVHYVFLSATIPNAMEFAEWI----CRIHSQPCHIV 317
+ V+ E I+ + +K+ V LS ++ NA + EWI C + + P ++
Sbjct: 1488 QGGQVL--EVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNV- 1544
Query: 318 YTDFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKK 377
RP PL+ H G+ ++ +F+ M +++ T
Sbjct: 1545 ----RPVPLE-----IHIHGVDIL----------SFEARMQAMTKPT------------- 1572
Query: 378 GQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEK 437
Y + K K P IVF +++ A+ + + ++ +
Sbjct: 1573 -----------------YTAIVQHAKNK-KPAIVFVPTRKHVRLTAVDL--IAYSHMDNM 1612
Query: 438 EALTKIFKNAIDLLPESDRELPQI--KHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF 495
++ + N L E + L QI + + LR GIG H GL + +E++ LF+ G
Sbjct: 1613 KSPDFLLGN----LEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGR 1668
Query: 496 LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 528
++V + + G + A VV +DG++
Sbjct: 1669 IQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRE 1701
>7299675 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 2059
Score = 69.7 bits (169), Expect = 2e-11
Identities = 93/385 (24%), Positives = 162/385 (41%), Gaps = 73/385 (18%)
Query: 166 SVLVSAHTSAGKTVVAEYAIAQSLREK-QRVIYTSPIKALSNQKY---RELLAEFG-DVG 220
+++ SA TSAGKT+V+E + +++ E+ ++V+ P ++ +K ++LL G V
Sbjct: 251 NLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQDLLTPAGYRVE 310
Query: 221 LMTGDITINPDAG--------CLV-MTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 271
G T P G C + I+ ++ +G + + V+ DEVH + DK
Sbjct: 311 GFYGGYT--PPGGFESLHVAICTIEKANSIVNKLMEQGK--LETIGMVVVDEVHLISDKG 366
Query: 272 RGVVWEETI--ILLPDK-----VHYVFLSATIPNAMEFAEWICRIHSQPCHIVYTDFRPT 324
RG + E + IL + + + +SAT+ N W+ + T++RP
Sbjct: 367 RGYILELLLAKILYMSRRNGLQIQVITMSATLENVQLLQSWL------DAELYITNYRPV 420
Query: 325 PLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQSYXXX 384
L+ + G + R+ QK + DDV
Sbjct: 421 ALKEMIKV----GTVIYDHRLKLVRDVAKQKVLLKGLENDSDDV---------------- 460
Query: 385 XXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIF 444
+ I ++ + VIVF SK CE LA++++ + + L +
Sbjct: 461 --------ALLCIETLL---EGCSVIVFCPSKDWCENLAVQLATAIHVQIKSETVLGQRL 509
Query: 445 KNAIDLLPESDRELPQIKHILPLLRRGI---------GIHHSGLLPILKEVIEILFQEGF 495
+ +L P + E+ Q +P G+ HH+GL +++IE F+ G
Sbjct: 510 RT--NLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAGLTTEERDIIEASFKAGA 567
Query: 496 LKVLFATETFSIGLNMPAKTVVFTS 520
LKVL AT T S G+N+PA+ V+ S
Sbjct: 568 LKVLVATSTLSSGVNLPARRVLIRS 592
>7295156 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1051
Score = 68.6 bits (166), Expect = 5e-11
Identities = 96/411 (23%), Positives = 172/411 (41%), Gaps = 77/411 (18%)
Query: 149 TLDPFQDTAIS--CIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQR-VIYTSPIKALS 205
+L +QD ++ I + ++++ + TS GKT+VAE + + L ++R V++ P ++
Sbjct: 263 SLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIV 322
Query: 206 NQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSM----LYRGSEVM-------- 253
+K + D+ + + T C RS+ + +G+ +M
Sbjct: 323 QEKVSAMSPFAIDLDFIVEEYTAGKGK-CPPQPRRKRRSLFIASIEKGAVLMDSLIDVQR 381
Query: 254 -REVAWVIFDEVHYMRDKERGVVWEE---TIILLPDKVHYVFLSATIPNAMEFAEWICRI 309
E+ V+ DE+H + +K RG E ++ L + V +SATI N E + ++
Sbjct: 382 PHEIGLVVVDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLNAD 441
Query: 310 HSQPCHIVYT-DFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQT---- 364
VYT FRP L+ Y+ G + L ++ G EE F + + N +
Sbjct: 442 -------VYTRGFRPVELKEYI--KCGPDL-LEINSAGQTLEEIFVPSRSVEYNYSEAVK 491
Query: 365 -GDDVHTINGRGKKGQSYXXXXXXXXXXXXIYKIVRMIWKKKYNPVIVFSFSKRDCEELA 423
D H + + +VF S+++CE +A
Sbjct: 492 RADPDHLAGLISECAPEHC--------------------------CLVFCPSRKNCENVA 525
Query: 424 LKMSKL----DFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILP-LLRRGIGIHHSG 478
L +S++ F E L DL+ D+ + +L L GI HHSG
Sbjct: 526 LLLSRIVPKHKFFEHRRSEKL--------DLMDALDKMCGILSPVLAKTLPYGIAYHHSG 577
Query: 479 LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQF 529
L ++ IE ++ G + V+ T T + G+N+PAK V+ + + GQ+F
Sbjct: 578 LTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVIIRA--PYVGQEF 626
>Hs18556835 [R] KOG0949 Predicted helicase DEAD-box superfamily
Length = 556
Score = 67.4 bits (163), Expect = 1e-10
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 27/228 (11%)
Query: 99 LGNTQTVQLESDGKVKLRHQV-----RHQVALPPNYDYKPIGDHVRTNEARTYPFTLDPF 153
L N+ L D K K ++ + R Q+ +Y I D + + R F + +
Sbjct: 254 LANSLDPTLIGDDKNKKKYSIDIGPARFQLQYMGHY---LIRDERKDRDPRVQDFIPNAW 310
Query: 154 QDTAISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLREKQ--RVIYTSPIKAL------- 204
Q + +D+ ES ++ A TS+GKT + Y + + LRE V+Y +P K+L
Sbjct: 311 QQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQVAAT 370
Query: 205 -SNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTT-----EILRSMLYRGSEVMREVAW 258
N+ + L A G T D N C V+ T EIL +R V R + +
Sbjct: 371 VENRFTKTLPAGRTLCGAFTRDYCHNV-LNCQVLITVPECFEILLLAPHRQKWVER-IRY 428
Query: 259 VIFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWI 306
VIFDEVHY+ + WE ++++ + ++ LSATI N +W+
Sbjct: 429 VIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLLTKWL 474
>Hs19525733 [R] KOG0950 DNA polymerase theta/eta DEAD-box superfamily
Length = 1101
Score = 65.1 bits (157), Expect = 6e-10
Identities = 89/442 (20%), Positives = 181/442 (40%), Gaps = 76/442 (17%)
Query: 158 ISCIDRMESVLVSAHTSAGKTVVAEYAIAQSLRE-KQRVIYTSPIKALSNQKYRELLAEF 216
++ + ++++ S TS GKT+VAE + Q L ++ V+ P A+ +K L +
Sbjct: 346 LNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFG 405
Query: 217 GDVGLMTGDI---------TINPDAGCLVMTT-----EILRSMLYRGSEVMREVAWVIFD 262
++G + T + L + T ++ S++ G + + V+ D
Sbjct: 406 IELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGR--IDSLGLVVVD 463
Query: 263 EVHYMRDKERGVVWEETI--ILLPDKVHYVF-LSATIPNAMEFAEWICRIHSQPCHIVYT 319
E+H + + RG E T+ IL K + +SAT+ N + +++ +
Sbjct: 464 ELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFL------QAEYYTS 517
Query: 320 DFRPTPLQHYLFPAHGDGIHLVVDEKGTFREENFQKAMASISNQTGDDVHTINGRGKKGQ 379
FRP L+ YL + D ++ ++ + + G
Sbjct: 518 QFRPVELKEYL--------------------------------KINDTIYEVDSKAENGM 545
Query: 380 SYXXXXXXXXXXXXIYK----IVRMIWKKKYN-PVIVFSFSKRDCEELALKMSKL---DF 431
++ +V ++ + N +VF SK++CE +A + K ++
Sbjct: 546 TFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKFLSKEY 605
Query: 432 NSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 491
+EKE ++ KN ++ + P +K +P G+ HHSGL ++++E +
Sbjct: 606 LKHKEKEKC-EVIKNLKNI--GNGNLCPVLKRTIPF---GVAYHHSGLTSDERKLLEEAY 659
Query: 492 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSXXXXXXXXXX 551
G L + T T + G+N+PA+ V+ + + ++F + +Y QM
Sbjct: 660 STGVLCLFTCTSTLAAGVNLPARRVILRA--PYVAKEF--LKRNQYKQMIGRAGRAGIDT 715
Query: 552 XXIVIMMIDEKMEPQVAKGMVK 573
I+++ EK + QV + + K
Sbjct: 716 IGESILILQEKDKQQVLELITK 737
>ECU06g0920 [A] KOG0951 RNA helicase BRR2 DEAD-box superfamily
Length = 1481
Score = 58.9 bits (141), Expect = 4e-08
Identities = 39/135 (28%), Positives = 64/135 (46%), Gaps = 22/135 (16%)
Query: 408 PVIVFSFSKRDCEELALKMSKLDFNSEEEKEALTKIFKNAIDLLPESDRELPQIKHILPL 467
PV+VF S+ + E+A E + + K + D+ PE + L
Sbjct: 461 PVLVFVHSRNEALEVA----------NEIRRYMEKASDDGADVSPE----------VREL 500
Query: 468 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 527
L+ +GIHH+GL + +E L++ G + V+ +T T + G+N+P KTV+ +D
Sbjct: 501 LKHRVGIHHAGLDRKTRVAVEDLYRNGKIDVMVSTATLAWGVNLPGKTVIIKGTEVYDAS 560
Query: 528 QFRW--VSGGEYIQM 540
RW + E IQM
Sbjct: 561 TSRWRPIKQIEMIQM 575
Score = 51.6 bits (122), Expect = 7e-06
Identities = 44/152 (28%), Positives = 77/152 (49%), Gaps = 14/152 (9%)
Query: 166 SVLVSAHTSAGKTVVAEYAIAQSL--REKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 223
+VLV A T +GKTV+ +I + R+K RV Y P+KAL+ + R + F G+
Sbjct: 264 NVLVCAPTGSGKTVIGMMSILREAERRKKMRVGYIVPMKALAREICRTISRWFSGYGISV 323
Query: 224 GDITINPDAGC-------LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 276
+ T + +G ++++T +L R +++ ++ V+ DE+H + D RG
Sbjct: 324 VEHTSDVYSGYAHLERTGVIVSTPEKFDVLTRNTDLWFDL--VVIDEIHMVGD-SRGAAV 380
Query: 277 EETIILLPDK--VHYVFLSATIPNAMEFAEWI 306
E + + + V LSAT+PN M+ +I
Sbjct: 381 EAVVARMAVRGGCRIVGLSATLPNYMDVGAFI 412
>At3g27730 [A] KOG0952 DNA/RNA helicase MER3/SLH1 DEAD-box superfamily
Length = 1113
Score = 51.6 bits (122), Expect = 7e-06
Identities = 50/187 (26%), Positives = 78/187 (40%), Gaps = 41/187 (21%)
Query: 160 CIDRMESVLVSAHTSAGKTVVAEYAIAQSLREK-------------QRVIYTSPIKALSN 206
C ++++SA T +GKTV+ E I + + + +Y SP KAL
Sbjct: 36 CFHSDINMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQ 95
Query: 207 QKYRELLAEFGDVGL----MTGD----ITINPDAGCLVMTTEILRSMLYR------GSEV 252
+K R+ +F G+ +TGD T N +++TT + R G
Sbjct: 96 EKLRDWNQKFNSWGISCLELTGDNETYSTKNIQDADIILTTPEKFDAVSRYRVTSGGLGF 155
Query: 253 MREVAWVIFDEVHYMRDKERGVVWEETIILLP-------------DKVHYVFLSATIPNA 299
++A V+ DEVH + D RG E + L V + +SATIPN
Sbjct: 156 FSDIALVLIDEVHLLNDP-RGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNI 214
Query: 300 MEFAEWI 306
+ AEW+
Sbjct: 215 EDLAEWL 221
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,260,378
Number of Sequences: 60738
Number of extensions: 2477608
Number of successful extensions: 7468
Number of sequences better than 1.0e-05: 43
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7263
Number of HSP's gapped (non-prelim): 120
length of query: 1073
length of database: 30,389,216
effective HSP length: 117
effective length of query: 956
effective length of database: 23,282,870
effective search space: 22258423720
effective search space used: 22258423720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)