ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0399 good U KOG3063 Intracellular trafficking, secretion, and vesicular transport Membrane coat complex Retromer, subunit VPS26
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0399 137209 136298 -304
(304 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL053w [U] KOG3063 Membrane coat complex Retromer subunit VPS26 384 e-106
SPAC4G9.13c [U] KOG3063 Membrane coat complex Retromer subunit V... 278 9e-75
Hs17978519 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 261 1e-69
Hs16418381 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 259 3e-69
7290217 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 246 4e-65
CE28684 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 245 7e-65
At5g53530 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 225 7e-59
At4g27690 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 221 1e-57
Hs22044968 [U] KOG3063 Membrane coat complex Retromer subunit VPS26 59 1e-08
Hs5174425 [R] KOG2717 Uncharacterized conserved protein with sim... 53 6e-07
7296343 [R] KOG2717 Uncharacterized conserved protein with simil... 52 1e-06
>YJL053w [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 379
Score = 384 bits (985), Expect = e-106
Identities = 208/378 (55%), Positives = 259/378 (68%), Gaps = 75/378 (19%)
Query: 1 MSLFYKNPVDIEILFDGEDSRKHVEIPTNSHSA--KSLFDKYPLFEDGESVTGLVTLRVR 58
MS+F+K P+DIEILFD E+SRKHV+I T S ++ KS+ + P++EDGES+ G+VTLRVR
Sbjct: 1 MSIFFKPPIDIEILFDNEESRKHVDIATRSSNSSYKSMKESLPVYEDGESLGGIVTLRVR 60
Query: 59 EGKKLEHSGIKVSLIGSID---TTGYNN-------------------DVKNKNLDTFLTL 96
+ KK++H GIKVS+IGSID + G N DV+ ++D FL
Sbjct: 61 DSKKVDHLGIKVSVIGSIDMLKSHGSGNSSSKKVTSSTSSSSSNGSVDVRKNSVDQFLCQ 120
Query: 97 SMDLCPPGELVHSVNYKFNFKDVEKRFESYLGKNVSVMYYIKVTMIRKSADIVKLKKFWC 156
S DLCP GEL HS ++ F F+D+ KR+ESY GKNV V YY+KVT++RKS DI K+K+FW
Sbjct: 121 SYDLCPAGELQHSQSFPFLFRDLSKRYESYKGKNVDVAYYVKVTVMRKSTDISKIKRFWV 180
Query: 157 HRY-----------ANES---------------------------------------SIK 166
+ Y ANE+ S
Sbjct: 181 YLYNSVTTAPNTLSANETKATTNDIAGGNYAADNASDNTQTKSTQGEAADVNQVLPISHS 240
Query: 167 DNEGKPIKLDIGIENCLHIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETC 226
+NE KP++LDIGIENCLHIEFEY+K+Q++LK+VIVGRIYFLLTRL++KHMELSLI RE+
Sbjct: 241 NNEPKPVRLDIGIENCLHIEFEYAKSQYSLKEVIVGRIYFLLTRLRIKHMELSLITRESS 300
Query: 227 GTEP-NQLSDTTSIRYEIMDGSPVKGETIPIRLFLGGYDLTPNMTCNYFNVKNYLSLVII 285
G + N ++D+T+IRYEIMDGS VKGETIPIRLFL GYDLTPNM+CNYFNVKNYLSLVII
Sbjct: 301 GLQTSNVMTDSTAIRYEIMDGSSVKGETIPIRLFLSGYDLTPNMSCNYFNVKNYLSLVII 360
Query: 286 DEDGRRYFKQTEIMLYRT 303
DEDGRRYFKQ+EI LYRT
Sbjct: 361 DEDGRRYFKQSEITLYRT 378
>SPAC4G9.13c [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 298
Score = 278 bits (710), Expect = 9e-75
Identities = 137/305 (44%), Positives = 204/305 (65%), Gaps = 16/305 (5%)
Query: 1 MSLFYKNPVDIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVREG 60
M F+K+P+D+++ D E+ R V+ DK P++E E+V G V +R+++G
Sbjct: 1 MDYFFKSPIDVDLHLDNEEERTFVDYEFEQGRK----DKAPIYESDETVKGTVMIRLKDG 56
Query: 61 KKLEHSGIKVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKDVE 120
+KL+H G+K+ IG I+ T N+ F +L PGE+ H+ ++F FK V+
Sbjct: 57 RKLDHDGVKIEFIGQIENT-----YDKGNIHEFTRSVQELASPGEMRHAQMFEFEFKHVD 111
Query: 121 KRFESYLGKNVSVMYYIKVTMIRKSADIVKLKKFWCHRYANESSIKDNEGKPIKLDIGIE 180
K +ESY+GKNV + Y +VT+ RK D+++ K W +R+ NE I++D+GI+
Sbjct: 112 KPYESYIGKNVKLRYICRVTVSRKMKDVIREKDLWVYRFENEPETNSL----IRMDVGID 167
Query: 181 NCLHIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDTTSI- 239
CLHIEFEYSK ++ LKDVI+G+IYF+L R+KV+ ME+S+I+RET GT PNQ S++ +I
Sbjct: 168 ECLHIEFEYSKNKYHLKDVIIGKIYFILVRIKVQRMEVSIIRRETIGTSPNQYSNSETIT 227
Query: 240 RYEIMDGSPVKGETIPIRLFLGGYDLTPNM--TCNYFNVKNYLSLVIIDEDGRRYFKQTE 297
R++IMDG+P +GETIP+R+FL GY LTP F+V+ YLSL+++DED RRYFKQ+E
Sbjct: 228 RFQIMDGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLILVDEDQRRYFKQSE 287
Query: 298 IMLYR 302
I L+R
Sbjct: 288 ITLWR 292
>Hs17978519 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 327
Score = 261 bits (666), Expect = 1e-69
Identities = 141/303 (46%), Positives = 205/303 (67%), Gaps = 17/303 (5%)
Query: 4 FYKNPVDIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVRE-GKK 62
F+ +I+I+ + ++RK E+ T +K+ LF DGESV+G V L ++ GK+
Sbjct: 7 FFGPICEIDIVLNDGETRKMAEMKTEDGKV----EKHYLFYDGESVSGKVNLAFKQPGKR 62
Query: 63 LEHSGIKVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKDVEKR 122
LEH GI++ +G I+ ND N + F+ L +L PGEL S +Y F F VEK
Sbjct: 63 LEHQGIRIEFVGQIELF---NDKSNTH--EFVNLVKELALPGELTQSRSYDFEFMQVEKP 117
Query: 123 FESYLGKNVSVMYYIKVTMIRKSADIVKLKKFWCHRYANESSIKDNEGKPIKLDIGIENC 182
+ESY+G NV + Y++KVT++R+ D+VK H+ A + ++ IK+++GIE+C
Sbjct: 118 YESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNS----IKMEVGIEDC 173
Query: 183 LHIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDTTSI-RY 241
LHIEFEY+K+++ LKDVIVG+IYFLL R+K++HMEL LIK+E G P+ ++T +I +Y
Sbjct: 174 LHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKY 233
Query: 242 EIMDGSPVKGETIPIRLFLGGYDLTPNM--TCNYFNVKNYLSLVIIDEDGRRYFKQTEIM 299
EIMDG+PVKGE+IPIRLFL GYD TP M F+V+ +L+LV++DE+ RRYFKQ EI+
Sbjct: 234 EIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEII 293
Query: 300 LYR 302
L+R
Sbjct: 294 LWR 296
>Hs16418381 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 336
Score = 259 bits (663), Expect = 3e-69
Identities = 143/307 (46%), Positives = 201/307 (64%), Gaps = 18/307 (5%)
Query: 1 MSLF-YKNPVDIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVRE 59
MS F + V++EIL + +SRK E T +KY LF DGE+V+G V+L ++
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKK----EKYFLFYDGETVSGKVSLALKN 56
Query: 60 -GKKLEHSGIKVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKD 118
K+LEH GIK+ IG I+ N F++L DL PGE+ S + F F
Sbjct: 57 PNKRLEHQGIKIEFIGQIELY-----YDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTH 111
Query: 119 VEKRFESYLGKNVSVMYYIKVTMIRKSADIVKLKKFWCHRYANESSIKDNEGKPIKLDIG 178
VEK +ESY G+NV + Y+++ T+ R+ D+VK H + + + IK+++G
Sbjct: 112 VEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNSS----IKMEVG 167
Query: 179 IENCLHIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDTTS 238
IE+CLHIEFEY+K+++ LKDVIVG+IYFLL R+K+KHME+ +IKRET GT PN + +
Sbjct: 168 IEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDT 227
Query: 239 I-RYEIMDGSPVKGETIPIRLFLGGYDLTPNM--TCNYFNVKNYLSLVIIDEDGRRYFKQ 295
I +YEIMDG+PV+GE+IPIRLFL GY+LTP M F+V+ YL+LV+IDE+ RRYFKQ
Sbjct: 228 IAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQ 287
Query: 296 TEIMLYR 302
E++L+R
Sbjct: 288 QEVVLWR 294
>7290217 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 478
Score = 246 bits (627), Expect = 4e-65
Identities = 133/304 (43%), Positives = 196/304 (63%), Gaps = 18/304 (5%)
Query: 3 LFYKNPVDIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVRE-GK 61
L + DIEI+FDG + H K +K LF DGE+V+G V + +++ G
Sbjct: 4 LGFGQSADIEIVFDGAE---HKTAEVKGEDGK--VEKMLLFYDGETVSGKVNVTLKKPGS 58
Query: 62 KLEHSGIKVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKDVEK 121
KLEH GIK+ IG I+ N F L+ L PG+L+ + +Y F+F VEK
Sbjct: 59 KLEHQGIKIEFIGQIELY-----YDRGNHHEFKCLAKALARPGDLIQNNSYPFDFPKVEK 113
Query: 122 RFESYLGKNVSVMYYIKVTMIRKSADIVKLKKFWCHRYANESSIKDNEGKPIKLDIGIEN 181
+FE Y G NV + Y+++ T++R+ +DI K H + + + PIK+++GIE+
Sbjct: 114 QFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHTLCSYPEMNN----PIKMEVGIED 169
Query: 182 CLHIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDTTSI-R 240
CLHIEFEY+K+++ L+D I+G+IYFLL R+K+KHME+++IK+E+ GT P ++ +I +
Sbjct: 170 CLHIEFEYNKSKYHLRDTIIGKIYFLLVRIKIKHMEIAIIKKESTGTGPTMFNENETIAK 229
Query: 241 YEIMDGSPVKGETIPIRLFLGGYDLTPNM--TCNYFNVKNYLSLVIIDEDGRRYFKQTEI 298
YEIMDG+PVKGE+IPIR+FL GY+LTP M F+VK +L+LV++D + RRYFKQ EI
Sbjct: 230 YEIMDGAPVKGESIPIRVFLAGYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEI 289
Query: 299 MLYR 302
L+R
Sbjct: 290 TLWR 293
>CE28684 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 408
Score = 245 bits (625), Expect = 7e-65
Identities = 130/297 (43%), Positives = 197/297 (65%), Gaps = 17/297 (5%)
Query: 10 DIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVREGK-KLEHSGI 68
+I+I ED+RK V+ + + F L+ DGESVTG V + +++ K EH GI
Sbjct: 64 EIQIRLSNEDTRKIVKARGDDGNMHDHF----LYYDGESVTGTVHVNLKKANHKFEHQGI 119
Query: 69 KVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKDVEKRFESYLG 128
++ IG I+ N F++L+ +L PG+L + + F F +VEK FE+Y+G
Sbjct: 120 RIEFIGQIEVY-----YDRGNQQDFISLTRELARPGDLTQNAQFPFEFNNVEKPFETYMG 174
Query: 129 KNVSVMYYIKVTMIRKSADIVKLKKFWCHRYANESSIKDNEGKPIKLDIGIENCLHIEFE 188
NV + Y+++VT+IR+ D+ K H SS DN+ K IK+++GIE+CLHIEFE
Sbjct: 175 TNVKLRYFLRVTVIRRLTDLTKELDLVVHAL---SSYPDND-KSIKMEVGIEDCLHIEFE 230
Query: 189 YSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDTTSI-RYEIMDGS 247
Y+K ++ L+DVIVG+IYFLL R+K+K+ME++++K E G+ PN ++ ++ ++EIMDG+
Sbjct: 231 YNKNKYHLQDVIVGKIYFLLVRIKIKYMEIAILKTEVVGSGPNTFKESETVAKFEIMDGA 290
Query: 248 PVKGETIPIRLFLGGYDLTPNM--TCNYFNVKNYLSLVIIDEDGRRYFKQTEIMLYR 302
PV+GE+IPIRLFL GYDL P+M F+VK +L+LV++DE+ RRYFKQ E+ L+R
Sbjct: 291 PVRGESIPIRLFLAGYDLAPSMRDVGKKFSVKYFLNLVLVDEEDRRYFKQQEVTLWR 347
>At5g53530 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 302
Score = 225 bits (573), Expect = 7e-59
Identities = 126/302 (41%), Positives = 190/302 (62%), Gaps = 17/302 (5%)
Query: 5 YKNPVDIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVREGKKLE 64
+K +I I F +RK ++PT + + + + PLF+ E++ G + + +GKK+E
Sbjct: 8 FKPACNISITFTDGKNRK--QVPTKKDNGQIVMN--PLFQSQETIAGKINIEPYQGKKVE 63
Query: 65 HSGIKVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKDVEKRFE 124
H+G+KV L+G I+ N F +L ++ PGE+ Y F F VE +E
Sbjct: 64 HNGVKVELLGQIEMY-----FDRGNFYDFTSLVREIDVPGEIYERKTYPFEFSSVEMPYE 118
Query: 125 SYLGKNVSVMYYIKVTMIRKSA-DIVKLKKFWCHRYANESSIKDNEGKPIKLDIGIENCL 183
+Y G NV + Y +KVT+ R A IV+ + F Y I ++ IK+++GIE+CL
Sbjct: 119 TYNGVNVRLRYVLKVTVTRGYAGSIVEYQDFVVRNYVPLPPINNS----IKMEVGIEDCL 174
Query: 184 HIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDT-TSIRYE 242
HIEFEY+K+++ LKDVI+G+IYFLL R+K+K+M+L + +RE+ G N +T T ++E
Sbjct: 175 HIEFEYNKSKYHLKDVILGKIYFLLVRIKIKNMDLEIRRRESTGAGANTHVETETLAKFE 234
Query: 243 IMDGSPVKGETIPIRLFLGGYDLTP--NMTCNYFNVKNYLSLVIIDEDGRRYFKQTEIML 300
+MDG+PV+GE+IP+R+FL YDLTP N F+VK YL+LV++DE+ RRYFKQ EI L
Sbjct: 235 LMDGAPVRGESIPVRVFLTPYDLTPTHKNINNKFSVKYYLNLVLVDEEDRRYFKQQEITL 294
Query: 301 YR 302
YR
Sbjct: 295 YR 296
>At4g27690 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 302
Score = 221 bits (562), Expect = 1e-57
Identities = 125/301 (41%), Positives = 186/301 (61%), Gaps = 16/301 (5%)
Query: 5 YKNPVDIEILFDGEDSRKHVEIPTNSHSAKSLFDKYPLFEDGESVTGLVTLRVREGKKLE 64
+K +I I F +RK ++P + ++ PLF ++++G V + +GKK+E
Sbjct: 8 FKPACNISITFSDGKNRK--QVPMKKENGQTAL--VPLFHSQDTISGKVCIEPYQGKKVE 63
Query: 65 HSGIKVSLIGSIDTTGYNNDVKNKNLDTFLTLSMDLCPPGELVHSVNYKFNFKDVEKRFE 124
H+G+KV L+G I+ N F +L +L PGE+ Y F F VE +E
Sbjct: 64 HNGVKVELLGQIEMY-----FDRGNFYDFTSLVRELDVPGEIYERKTYPFEFPTVEMPYE 118
Query: 125 SYLGKNVSVMYYIKVTMIRKSADIVKLKKFWCHRYANESSIKDNEGKPIKLDIGIENCLH 184
+Y G NV + Y +KVT+ R A + + YA I ++ IK+++GIE+CLH
Sbjct: 119 TYNGVNVRLRYVLKVTVTRGYAGSILEYQELVRNYAPLPDINNS----IKMEVGIEDCLH 174
Query: 185 IEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDT-TSIRYEI 243
IEFEY+K+++ LKDVI+G+IYFLL R+K+K+M+L + +RE+ G N +T T ++E+
Sbjct: 175 IEFEYNKSKYHLKDVILGKIYFLLVRIKMKNMDLEIRRRESTGAGANTHVETETLAKFEL 234
Query: 244 MDGSPVKGETIPIRLFLGGYDLTP--NMTCNYFNVKNYLSLVIIDEDGRRYFKQTEIMLY 301
MDG+PV+GE+IP+RLFL YDLTP N F+VK YL+LV++DE+ RRYFKQ EI LY
Sbjct: 235 MDGTPVRGESIPVRLFLAPYDLTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITLY 294
Query: 302 R 302
R
Sbjct: 295 R 295
>Hs22044968 [U] KOG3063 Membrane coat complex Retromer subunit VPS26
Length = 120
Score = 58.5 bits (140), Expect = 1e-08
Identities = 31/66 (46%), Positives = 45/66 (67%), Gaps = 6/66 (9%)
Query: 171 KPIKLDIGIENCLHIEFEYSKAQHTLKDVIVGRIYFLLTRLKVKHMELSLIKRETCGTEP 230
KP DIG +H+ SK+++ LK VIVG+IYFL+ R+K++HMEL LIK+E G P
Sbjct: 54 KPYASDIGAS--VHL----SKSKYHLKHVIVGKIYFLVVRIKIQHMELQLIKKEITGIGP 107
Query: 231 NQLSDT 236
+ ++T
Sbjct: 108 STTAET 113
>Hs5174425 [R] KOG2717 Uncharacterized conserved protein with similarity to
embryogenesis protein H beta 58 and VPS26
Length = 297
Score = 52.8 bits (125), Expect = 6e-07
Identities = 50/270 (18%), Positives = 112/270 (40%), Gaps = 31/270 (11%)
Query: 42 LFEDGESVTGLVTLRVREGKKLEHSGIKVSLIGSIDTT----------GYNNDVKNKNL- 90
++ GE ++G+V + ++ ++H G+ +++ G+++ + N VK +
Sbjct: 15 VYHAGEVLSGVVVISSKDS--VQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQII 72
Query: 91 -DTFLTLSMDLCPPGELVHSVNYKFNFKDVEKRFESYLGKNVSVMYYIKVTMIRK--SAD 147
T + P G+ + + K + +E+Y G V++ Y ++ M R + D
Sbjct: 73 NSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVLYETYHGVFVNIQYTLRCDMKRSLLAKD 132
Query: 148 IVKLKKFWCHRYANESSIKDNEGKPIKLDIGIENCLHIEFEYSKAQHTLK---------- 197
+ K +F H + + P+ I E +++ + L+
Sbjct: 133 LTKTCEFIVHSAPQKGKFTPS---PVDFTITPETLQNVKERALLPKFLLRGHLNSTNCVI 189
Query: 198 -DVIVGRIYFLLTRLKVKHMELSLIKRETCGTEPNQLSDTTSIR-YEIMDGSPVKGETIP 255
+ G + + ++ +EL L++ ETCG D T I+ +I DG +G ++P
Sbjct: 190 TQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVP 249
Query: 256 IRLFLGGYDLTPNMTCNYFNVKNYLSLVII 285
I + P + F V+ +++V++
Sbjct: 250 IYMVFPRLFTCPTLETTNFKVEFEVNIVVL 279
>7296343 [R] KOG2717 Uncharacterized conserved protein with similarity to
embryogenesis protein H beta 58 and VPS26
Length = 295
Score = 51.6 bits (122), Expect = 1e-06
Identities = 62/277 (22%), Positives = 122/277 (43%), Gaps = 40/277 (14%)
Query: 61 KKLEHSGIKVSLIGSID------TTG----YNNDVKNKNLDTFLTLSMDLCPPGELVHSV 110
++ +H GI + L G ++ T G + N VK NL L S++L PG+L +
Sbjct: 12 QETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPINL---LQNSLELSAPGKL-SAG 67
Query: 111 NYKFNF-------KDVEKRFESYLGKNVSVMYYIKVTMIRK--SADIVKLKKFWCHRYAN 161
+F+F K+ +E+Y G ++V Y + T+ R K+++F C +Y
Sbjct: 68 RSEFHFELPLVCKKEPRILYETYHGVFINVNYQLTCTVKRNFLGKATTKIQQF-CVQYKP 126
Query: 162 ESSIKDNEGKPIKLDIGIENCLH--------------IEFEYSKAQHTLKDVIVGRIYFL 207
+D++ K + + ++ I +++ + I G I
Sbjct: 127 VPLSEDSK-KVVPFSLSPDSLQKNASAKERLSMPRFLITGRLDRSEFCVTTPITGSITVQ 185
Query: 208 LTRLKVKHMELSLIKRETCGTEPNQLSDTTSIR-YEIMDGSPVKGETIPIRLFLGGYDLT 266
T +K +E+ L++ ETCG + D T I+ +I DG+ + +PI + L
Sbjct: 186 HTEAAIKSIEMQLVRVETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIHMVLPRLFTC 245
Query: 267 PNMTCNYFNVKNYLSLVIIDEDGRRYFKQTEIMLYRT 303
P + F ++ L+L+++ ++ + +I+L R+
Sbjct: 246 PTLLTKNFKIEFELNLIVVFKEDYTVSENFKIVLKRS 282
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.139 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,513,380
Number of Sequences: 60738
Number of extensions: 797149
Number of successful extensions: 1850
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 13
length of query: 304
length of database: 30,389,216
effective HSP length: 106
effective length of query: 198
effective length of database: 23,950,988
effective search space: 4742295624
effective search space used: 4742295624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)