ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0421 good R KOG0381 General function prediction only HMG box-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0421 143830 143348 -161
(161 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR072w [R] KOG0381 HMG box-containing protein 86 2e-17
YKL032c [R] KOG0381 HMG box-containing protein 72 3e-13
7300630 [R] KOG0381 HMG box-containing protein 54 1e-07
Hs4885421 [R] KOG0381 HMG box-containing protein 52 3e-07
Hs11321591 [R] KOG0381 HMG box-containing protein 51 6e-07
Hs4504425 [R] KOG0381 HMG box-containing protein 51 8e-07
Hs20546564 [R] KOG0381 HMG box-containing protein 51 8e-07
Hs4507401_2 [R] KOG0381 HMG box-containing protein 50 1e-06
Hs19923236_2 [R] KOG0381 HMG box-containing protein 50 2e-06
At4g23800 [R] KOG0381 HMG box-containing protein 49 4e-06
Hs21624652 [R] KOG0381 HMG box-containing protein 48 7e-06
Hs17473121 [R] KOG0381 HMG box-containing protein 48 7e-06
>YMR072w [R] KOG0381 HMG box-containing protein
Length = 183
Score = 85.9 bits (211), Expect = 2e-17
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 20 PKRPPTAFSYYFSQVHDHICASHNVSNPGAM-KIAGKQWRSLSESEKQKYVDALKPLRXX 78
PKRP +A+ Y + P + KIAG++W++L K+KY+ K L
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSE 102
Query: 79 XXXXXXXXXXTLPPKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTK 138
LPPKKPA F + E Q+ ++P SQ++++K+ KW+SLD S K
Sbjct: 103 YQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKIIGDKWQSLDQSIK 162
Query: 139 EQYQNKYREDLAEY 152
++Y +Y++ + EY
Sbjct: 163 DKYIQEYKKAIQEY 176
Score = 53.9 bits (128), Expect = 9e-08
Identities = 30/97 (30%), Positives = 50/97 (50%)
Query: 58 RSLSESEKQKYVDALKPLRXXXXXXXXXXXXTLPPKKPATSFGSFLKEKSPQLRTENPGL 117
RS ES K + A L+ PK+P +++ +L++ Q ENP L
Sbjct: 9 RSFHESSKPLFNLASTLLKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTL 68
Query: 118 SQIEILKLASSKWKSLDASTKEQYQNKYREDLAEYRK 154
EI K+A KW++L+A KE+Y ++ ++ +EY+K
Sbjct: 69 RPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQK 105
>YKL032c [R] KOG0381 HMG box-containing protein
Length = 597
Score = 72.0 bits (175), Expect = 3e-13
Identities = 36/134 (26%), Positives = 65/134 (47%), Gaps = 1/134 (0%)
Query: 20 PKRPPTAFSYYFSQVHDHICASHNVSN-PGAMKIAGKQWRSLSESEKQKYVDALKPLRXX 78
PKRP +A+ + + + + + P K+A +W+ L++ +K+ + + +
Sbjct: 361 PKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKPFYEEFRTNWEK 420
Query: 79 XXXXXXXXXXTLPPKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTK 138
TLPPK+P+ F F +E P + ENP IEI K+ +W+ LD + K
Sbjct: 421 YRVVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGLIEITKIIGERWRELDPAKK 480
Query: 139 EQYQNKYREDLAEY 152
+Y Y++ L E+
Sbjct: 481 AEYTETYKKRLKEW 494
>7300630 [R] KOG0381 HMG box-containing protein
Length = 257
Score = 53.5 bits (127), Expect = 1e-07
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 92 PKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTKEQYQNKYREDLAE 151
PKKP T + F++E+ P+L+ NP ++ +E+++ S W DA KE+ Q +++ D
Sbjct: 51 PKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQI 110
Query: 152 Y 152
Y
Sbjct: 111 Y 111
>Hs4885421 [R] KOG0381 HMG box-containing protein
Length = 200
Score = 52.4 bits (124), Expect = 3e-07
Identities = 36/158 (22%), Positives = 67/158 (41%), Gaps = 27/158 (17%)
Query: 19 KPKRPPTAFSYYFSQVHDHICASHNVSNPGA-------MKIAGKQWRSLSESEKQKYVDA 71
KPK +A++++ + H NP K ++W+++S EK K+ +
Sbjct: 8 KPKGKTSAYAFFVQTCREE----HKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEM 63
Query: 72 LKPLRXXXXXXXXXXXXTL---------PPKKPATSFGSFLKEKSPQLRTENPGLSQIEI 122
K + PK+P + F F E P++++ NPG+S ++
Sbjct: 64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDV 123
Query: 123 LKLASSKWKSLDASTKEQY-------QNKYREDLAEYR 153
K W +L+ S K+ Y + KY +D+A+Y+
Sbjct: 124 AKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYK 161
>Hs11321591 [R] KOG0381 HMG box-containing protein
Length = 209
Score = 51.2 bits (121), Expect = 6e-07
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 19 KPKRPPTAFSYYFSQVHDHICASHNVSNPGAMKIAGK---QWRSLSESEKQKYVDALKPL 75
KP+ ++++++ + H S+ + + K +W+++S EK K+ D K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSD 67
Query: 76 RXXXXXXXXXXXXTL-----------PPKKPATSFGSFLKEKSPQLRTENPGLSQIEILK 124
+ PK+P ++F F E P++++E+PGLS + K
Sbjct: 68 KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAK 127
Query: 125 LASSKWKSLDASTKEQYQ-------NKYREDLAEYR 153
W A K+ Y+ KY +D+A YR
Sbjct: 128 KLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYR 163
>Hs4504425 [R] KOG0381 HMG box-containing protein
Length = 215
Score = 50.8 bits (120), Expect = 8e-07
Identities = 35/156 (22%), Positives = 66/156 (41%), Gaps = 21/156 (13%)
Query: 19 KPKRPPTAFSYYFSQVHDHICASH---NVSNPGAMKIAGKQWRSLSESEKQKYVDALKPL 75
KP+ ++++++ + H +V+ K ++W+++S EK K+ D K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 76 RXXXXXXXXXXXXTL-----------PPKKPATSFGSFLKEKSPQLRTENPGLSQIEILK 124
+ PK+P ++F F E P+++ E+PGLS ++ K
Sbjct: 68 KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 127
Query: 125 LASSKWKSLDASTKEQYQ-------NKYREDLAEYR 153
W + A K+ Y+ KY +D+A YR
Sbjct: 128 KLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 163
>Hs20546564 [R] KOG0381 HMG box-containing protein
Length = 173
Score = 50.8 bits (120), Expect = 8e-07
Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 19 KPKRPPTAFSYYFSQVHDHICASHNVSNPGAMKIAGKQWRSLSESEKQKYVDALKPLRXX 78
KPK +A+ ++ + + V+ K ++W+++S EK K+ + K +
Sbjct: 8 KPKGKMSAYVFFVQTCREECKKKNPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKTDKVH 67
Query: 79 X-------XXXXXXXXXTLPPKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWK 131
PK+P + F F E P++++ NPG+S ++ K W
Sbjct: 68 CDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWN 127
Query: 132 SLDASTKEQY-------QNKYREDLAE 151
+L+ S K+ Y + KY +D+A+
Sbjct: 128 NLNDSEKQPYITKTAKLKEKYEKDVAD 154
>Hs4507401_2 [R] KOG0381 HMG box-containing protein
Length = 213
Score = 50.1 bits (118), Expect = 1e-06
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 92 PKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTKEQYQNKYREDLAE 151
PKKP +S+ F KE+ P + +NP E+++ + +W+ L S K+ YQ+ YR +
Sbjct: 17 PKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQV 76
Query: 152 YRK 154
Y++
Sbjct: 77 YKE 79
>Hs19923236_2 [R] KOG0381 HMG box-containing protein
Length = 181
Score = 49.7 bits (117), Expect = 2e-06
Identities = 34/137 (24%), Positives = 58/137 (41%), Gaps = 25/137 (18%)
Query: 42 HNVSNPGA-------MKIAGKQWRSLSESEKQKYVDALKPLRXXXXXXXXXXXXTL---- 90
H NP A +K + W+++ EK K+ D K +
Sbjct: 3 HKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKK 62
Query: 91 -------PPKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTKEQYQ- 142
PK+P +F F E P+++ E+PGLS +++K + W + A+ K+ Y+
Sbjct: 63 KKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEK 122
Query: 143 ------NKYREDLAEYR 153
KY++D+A YR
Sbjct: 123 KAAKLKEKYKKDIAAYR 139
>At4g23800 [R] KOG0381 HMG box-containing protein
Length = 456
Score = 48.5 bits (114), Expect = 4e-06
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 92 PKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTKEQYQNKYREDLAE 151
PKKPA+S+ F K++ +L E PG + + L S KWK L K+ Y K + +
Sbjct: 379 PKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEA 438
Query: 152 YRK 154
Y+K
Sbjct: 439 YKK 441
>Hs21624652 [R] KOG0381 HMG box-containing protein
Length = 186
Score = 47.8 bits (112), Expect = 7e-06
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 19/159 (11%)
Query: 15 EAAVKPKRPPTAFSYYFSQVHDHICASHNVSNPGAMKIAGK---QWRSLSESEKQKYVDA 71
E +KPK +++ ++ + + G + + K +WRS+S+ EK KY
Sbjct: 4 EIQLKPKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSEKWRSISKHEKAKYEAL 63
Query: 72 LK---------PLRXXXXXXXXXXXXTLPPKKPATSFGSFLKEKSPQLRTENPGLSQIEI 122
K + P++P +SF F ++ QL+ ENP S +++
Sbjct: 64 AKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQV 123
Query: 123 LKLASSKWKSLDASTKEQYQN-------KYREDLAEYRK 154
K W + K Y+ KY E+L YRK
Sbjct: 124 AKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRK 162
>Hs17473121 [R] KOG0381 HMG box-containing protein
Length = 393
Score = 47.8 bits (112), Expect = 7e-06
Identities = 20/67 (29%), Positives = 37/67 (54%)
Query: 92 PKKPATSFGSFLKEKSPQLRTENPGLSQIEILKLASSKWKSLDASTKEQYQNKYREDLAE 151
PK+P T++ F KE PQ PG+ E+ K+ S K++ L K++Y +R++ E
Sbjct: 100 PKRPLTAYNRFFKESWPQYSQMYPGMRSQELTKILSKKYRELPEQMKQKYIQDFRKEKQE 159
Query: 152 YRKVMGQ 158
+ + + +
Sbjct: 160 FEEKLAR 166
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.313 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,222,704
Number of Sequences: 60738
Number of extensions: 325416
Number of successful extensions: 1015
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 30
length of query: 161
length of database: 30,389,216
effective HSP length: 98
effective length of query: 63
effective length of database: 24,436,892
effective search space: 1539524196
effective search space used: 1539524196
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)