ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI0466   suspect: LH   U     KOG4809  Intracellular trafficking, secretion, and vesicular transport  Rab6 GTPase-interacting protein involved in endosome-to-TGN transport

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI0466  158672 156612 -687 
         (687 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs14149661 [U] KOG4809 Rab6 GTPase-interacting protein involved ...    52   3e-06

>Hs14149661 [U] KOG4809 Rab6 GTPase-interacting protein involved in
           endosome-to-TGN transport
          Length = 948

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 44/201 (21%), Positives = 87/201 (42%), Gaps = 25/201 (12%)

Query: 490 SLAPLPLKNNSNERQLEVVSELYKETMKRVKLGQMILFRMFNKSNEEVAELHRQLRKTNE 549
           SLA   LK +S  + LE+  E  KE                     E  ++  QL+K +E
Sbjct: 656 SLASSGLKKDSRLKTLEIALEQKKE---------------------ECLKMESQLKKAHE 694

Query: 550 IEMLRN---KLNGNLGDLQERYSRYEEKSKTLEKRLDKLKETFSSIENNEKLRTSSISEA 606
             +      +++  +  L+   +RY+++S   +  +D+L E    +EN +  +   I+E 
Sbjct: 695 AALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAEL 754

Query: 607 ELVWFKSIKNQVLKFNNYVHLTN-KLREELEFLDTQLRSTTKGDDFFSELEFSSLQQMLL 665
           E +  + +K+Q  K  N  H    + ++  + L+   R     +D   +L+   L   + 
Sbjct: 755 ESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQVEELLMAME 814

Query: 666 NDKKVINSCMNELSASIEDLA 686
             K+ + S   +LS++ + LA
Sbjct: 815 KVKQELESMKAKLSSTQQSLA 835


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,403,070
Number of Sequences: 60738
Number of extensions: 1788253
Number of successful extensions: 7028
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7024
Number of HSP's gapped (non-prelim): 3
length of query: 687
length of database: 30,389,216
effective HSP length: 113
effective length of query: 574
effective length of database: 23,525,822
effective search space: 13503821828
effective search space used: 13503821828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)