ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI0469   good          J     KOG3435  Translation, ribosomal structure and biogenesis                Mitochondrial/chloroplast ribosomal protein L54/L37

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI0469  159263 158970 -98  
         (98 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBR268w [J] KOG3435 Mitochondrial/chloroplast ribosomal protein ...    97   4e-21
SPCC645.09 [J] KOG3435 Mitochondrial/chloroplast ribosomal prote...    52   2e-07
At3g01740 [J] KOG3435 Mitochondrial/chloroplast ribosomal protei...    47   6e-06

>YBR268w [J] KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37
          Length = 105

 Score = 97.1 bits (240), Expect = 4e-21
 Identities = 53/104 (50%), Positives = 70/104 (66%), Gaps = 14/104 (13%)

Query: 1   MLRVTRVLFNQ--VKSEASGQAAKIVSSCPAGTPLNLQIKKSGKEPVALEDSEYPEWLWT 58
           ++  +R+L+N+  VKS        +VSSCPAGT LNL I KSGK+ VALED EYP WLW+
Sbjct: 10  LISTSRILYNKPTVKS--------VVSSCPAGTSLNLNIWKSGKDAVALEDKEYPNWLWS 61

Query: 59  VLDANVQAEKLAADP----IKLRKKQLRIANRANIKQNNFLAKI 98
           VLD++   E  A DP    +  R+K +R ANR  IKQNNFL+++
Sbjct: 62  VLDSDHVVEHAAEDPEGQALLKRRKNIRKANRQRIKQNNFLSQL 105


>SPCC645.09 [J] KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37
          Length = 139

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 35/81 (43%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 11  QVKSEASGQAAKIV-----SSCPAGTPLN-LQIKKSGKEPVALEDSEYPEWLWTVLDANV 64
           Q  S+A+  A K+      SS   GT L  L IK  G +PVA ED EYPEWLW++LD   
Sbjct: 56  QHNSDATSSAQKVANKTHTSSVLPGTILKGLCIKAGGVDPVAREDHEYPEWLWSLLDEPA 115

Query: 65  QAEKLAADPIKLRKKQLRIAN 85
              K A      RK  +R AN
Sbjct: 116 PNSKTARS--HARKSAIRAAN 134


>At3g01740 [J] KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37
          Length = 126

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 4   VTRVLFNQVKSEAS-GQAAKIVSSCPAGTPLNLQIK----------KSGKEPVALEDSEY 52
           V R  F    S+A  G      S  P G+ L  +IK          K G +P  L DS+Y
Sbjct: 15  VVRRTFAAAASKAKKGGKGGGASDAPKGSSLTKEIKSTTVVGANTLKDGSDPKILPDSDY 74

Query: 53  PEWLWTVLD-----ANVQAEKLAADPIKLRKKQLRIANRANIKQNN 93
           P+WLW +LD     + ++ + +   P    K+ +++  R  IK+NN
Sbjct: 75  PDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRGKIKENN 120


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,172,589
Number of Sequences: 60738
Number of extensions: 186176
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 3
length of query: 98
length of database: 30,389,216
effective HSP length: 74
effective length of query: 24
effective length of database: 25,894,604
effective search space: 621470496
effective search space used: 621470496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)