ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0490 good J KOG3280 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein L17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0490 165790 166527 246
(246 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL063c [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17 168 6e-42
SPBC1271.13 [J] KOG3280 Mitochondrial/chloroplast ribosomal prot... 102 6e-22
At3g54210 [J] KOG3280 Mitochondrial/chloroplast ribosomal protei... 81 1e-15
At5g64650 [J] KOG3280 Mitochondrial/chloroplast ribosomal protei... 77 2e-14
At5g09770 [J] KOG3280 Mitochondrial/chloroplast ribosomal protei... 75 1e-13
Hs11596859 [J] KOG3280 Mitochondrial/chloroplast ribosomal prote... 57 2e-08
>YJL063c [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17
Length = 238
Score = 168 bits (426), Expect = 6e-42
Identities = 106/250 (42%), Positives = 144/250 (57%), Gaps = 19/250 (7%)
Query: 1 MTRGLARHLSRTKPHRDALIRNMATQLLQHGTISSTTPKLKETQRYVERIITIAKNGIQN 60
MT G+AR LSR K HRDAL++N+A QL QH +I ST K KE R ERIIT K I
Sbjct: 1 MTVGIARKLSRDKAHRDALLKNLACQLFQHESIVSTHAKCKEASRVAERIITWTKRAITT 60
Query: 61 GNPSSSVP---ELQSRLYLSGDNSKLLKKLFDEIAPRYTARNGGYTRVMKLEPRLGDRAP 117
N + ++QS+L+L+GDN KL+K+LF EIAPRY R GGYTRV++LEPR D AP
Sbjct: 61 SNSVAQAELKSQIQSQLFLAGDNRKLMKRLFSEIAPRYLERPGGYTRVLRLEPRANDSAP 120
Query: 118 QAILELVDAPVQNEDGQXXXXXXXXXXXXXTCMQQIEDAGQLA--PKTVQNLKKMVHNKT 175
Q++LELVD+PV +E + + +DA QL P T+QNL K+ K
Sbjct: 121 QSVLELVDSPVMSESHTVNRGNLKMWLLVKSVIN--DDANQLPHNPLTLQNLHKVAKFKA 178
Query: 176 LDQLLHEIGVIRKYILESQQQNSTTEVSELPEFDETLQQQFLAAVKDQIQNHTAEK--KQ 233
QL EI +I++ +L+ LP +DE L+ + A+ ++ + + K K+
Sbjct: 179 EAQLHGEIMLIKQVLLKEM---------SLP-YDEALENERTQALLKEVYSSSLPKKTKK 228
Query: 234 PDGYVFRERP 243
P YV RP
Sbjct: 229 PSSYVMVPRP 238
>SPBC1271.13 [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17
Length = 207
Score = 102 bits (253), Expect = 6e-22
Identities = 53/121 (43%), Positives = 73/121 (59%), Gaps = 6/121 (4%)
Query: 7 RHLSRTKPHRDALIRNMATQLLQHGTISSTTPKLKETQRYVERIITIAKNGIQNGNPSSS 66
R L RT HR AL+RN+ T L++H +I +T K KE QR+ E++IT+AK NP ++
Sbjct: 8 RKLGRTSAHRQALLRNLVTSLVKHESIQTTWAKAKEAQRFAEKLITMAKRA----NPQNN 63
Query: 67 VPELQSRLYLSGDNSKLLKKLFDEIAPRYTARNGGYTRVMKLEPRLGDRAPQAILELVDA 126
L + + + LKK+FD + PRY R GYTR++KL PR D AP +LE VD
Sbjct: 64 RKGLAEGMVFEKETT--LKKVFDVLVPRYNGRRCGYTRLLKLPPRSTDNAPMGVLEFVDG 121
Query: 127 P 127
P
Sbjct: 122 P 122
>At3g54210 [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17
Length = 211
Score = 81.3 bits (199), Expect = 1e-15
Identities = 45/116 (38%), Positives = 69/116 (58%), Gaps = 9/116 (7%)
Query: 9 LSRTKPHRDALIRNMATQLLQHGTISSTTPKLKETQRYVERIITIAKNGIQNGNPSSSVP 68
L+R R AL+R + TQLL+HG I +T + +++V+++IT+AK+G S
Sbjct: 105 LNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDG-------SLHK 157
Query: 69 ELQSRLYLSGDNSKLLKKLFDEIAPRYTARNGGYTRVMKLEPRLGDRAPQAILELV 124
Q+ Y+ +++ LF E+ RY RNGGYTR+++ PR GD AP A +ELV
Sbjct: 158 RRQALGYIY--EKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
>At5g64650 [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17
Length = 156
Score = 77.0 bits (188), Expect = 2e-14
Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 7 RHLSRTKPHRDALIRNMATQLLQHGTISSTTPKLKETQRYVERIITIAKNGIQNGNPSSS 66
R L R HR +++R M +QL+QH I +T K KE +R +A N IQ G S
Sbjct: 5 RKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRR-------LADNMIQLGKEGSL 57
Query: 67 VPELQSRLYLSGDNSKLLKKLFDEIAPRYTARNGGYTRVMKLEPRLGDRAPQAILE 122
++ ++ GD+ +L K+F E+A RY R GGYTR+++ R+GD AP A +E
Sbjct: 58 AAARRAAGFVRGDD--VLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIE 111
>At5g09770 [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17
Length = 156
Score = 74.7 bits (182), Expect = 1e-13
Identities = 44/116 (37%), Positives = 66/116 (55%), Gaps = 9/116 (7%)
Query: 7 RHLSRTKPHRDALIRNMATQLLQHGTISSTTPKLKETQRYVERIITIAKNGIQNGNPSSS 66
R L R HR +++R M +QL++H I +T K KE +R +A N IQ G S
Sbjct: 5 RKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRR-------LADNMIQLGKEGSL 57
Query: 67 VPELQSRLYLSGDNSKLLKKLFDEIAPRYTARNGGYTRVMKLEPRLGDRAPQAILE 122
++ ++ GD+ +L K+F E+A RY R GGYTR+++ R+GD AP A +E
Sbjct: 58 SAARRAAGFVRGDD--VLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIE 111
>Hs11596859 [J] KOG3280 Mitochondrial/chloroplast ribosomal protein L17
Length = 175
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 19 LIRNMATQLLQHGTISSTTPKLKETQRYVERIITIAKNGIQNGNPSSSVPELQSRLYLSG 78
L+RN+ T L++H I + ++ E + Y E++I K G N + +L+
Sbjct: 28 LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMR-----MADFWLT- 81
Query: 79 DNSKLLKKLFDEIAPRYTARNGGYTRVMKLEPRLGDRAPQAILE 122
L+ KLF +APRY + GGYTR++++ R DRA A++E
Sbjct: 82 -EKDLIPKLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIE 124
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.131 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,805,506
Number of Sequences: 60738
Number of extensions: 547782
Number of successful extensions: 1359
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 6
length of query: 246
length of database: 30,389,216
effective HSP length: 104
effective length of query: 142
effective length of database: 24,072,464
effective search space: 3418289888
effective search space used: 3418289888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)