ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0505 good L KOG1658 Replication, recombination and repair DNA polymerase epsilon, subunit C
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0505 170883 171380 166
(166 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJL065c [L] KOG1658 DNA polymerase epsilon subunit C 78 6e-15
YBR278w [L] KOG1658 DNA polymerase epsilon subunit C 77 8e-15
SPAC17G8.03c [K] KOG1659 Class 2 transcription repressor NC2 alp... 50 2e-06
Hs9845281 [L] KOG1658 DNA polymerase epsilon subunit C 48 7e-06
>YJL065c [L] KOG1658 DNA polymerase epsilon subunit C
Length = 167
Score = 77.8 bits (190), Expect = 6e-15
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 9 PRIPISKCKKIARTDPEYILTSQXXXXXXXXXXELFIQMLAEETCSLAQIHKQTKT---- 64
P++P+ K ++IA+ DPEY+ TS E F+Q+L E+ Q +Q +
Sbjct: 18 PKLPVEKVQRIAKNDPEYMDTSDDAFVATAFATEFFVQVLTHESLHRQQQQQQQQVPPLP 77
Query: 65 --LRLNYEDLSTAIRNLD--KFQFLSDVVPQTENLASLVRENKVRYT 107
L L+Y+D+S AI + QFL+DV+P T+NL LV EN+VRYT
Sbjct: 78 DELTLSYDDISAAIVHSSDGHLQFLNDVIPTTKNLRLLVEENRVRYT 124
>YBR278w [L] KOG1658 DNA polymerase epsilon subunit C
Length = 201
Score = 77.4 bits (189), Expect = 8e-15
Identities = 39/101 (38%), Positives = 59/101 (57%), Gaps = 1/101 (0%)
Query: 5 KSKLPRIPISKCKKIARTDPEYILTSQXXXXXXXXXXELFIQMLAEETCSLAQIHKQTKT 64
K K P PISK KKIA+ DPEY++TS ELF+Q L EE+ LAQ++ + KT
Sbjct: 6 KEKAPVFPISKVKKIAKCDPEYVITSNVAISATAFAAELFVQNLVEESLVLAQLNSKGKT 65
Query: 65 -LRLNYEDLSTAIRNLDKFQFLSDVVPQTENLASLVRENKV 104
LRL+ + + D F+FL D + Q + ++L ++ ++
Sbjct: 66 SLRLSLNSIEECVEKRDNFRFLEDAIKQLKKNSALDKKREL 106
>SPAC17G8.03c [K] KOG1659 Class 2 transcription repressor NC2 alpha subunit
(DRAP1)
Length = 199
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 10 RIPISKCKKIARTDPEYILTSQXXXXXXXXXXELFIQMLAEETCSLAQIHKQTKTLRLNY 69
R P+++ KKI + D + +Q ELF+Q + +E+C ++H + R+
Sbjct: 23 RFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLH---QAKRVTV 79
Query: 70 EDLSTAIRNLDKFQFLSDVVPQTENLASLVRENKVR 105
L A++++++F FL D+V + + + E K +
Sbjct: 80 SHLKHAVQSVEQFDFLQDIVEKVPDAPPIKAERKTK 115
>Hs9845281 [L] KOG1658 DNA polymerase epsilon subunit C
Length = 117
Score = 47.8 bits (112), Expect = 7e-06
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 6 SKLPRIPISKCKKIARTDPEYILTSQXXXXXXXXXXELFIQMLAEETCSLAQIHKQTKTL 65
++L R+P+++ K + + DP+ L Q ELF++ +A++ AQ Q K
Sbjct: 36 ARLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQ---QGKRK 92
Query: 66 RLNYEDLSTAIRNLDKFQFL 85
L DL AI +D+F FL
Sbjct: 93 TLQRRDLDNAIEAVDEFAFL 112
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.129 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,366,134
Number of Sequences: 60738
Number of extensions: 159331
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 30,389,216
effective HSP length: 98
effective length of query: 68
effective length of database: 24,436,892
effective search space: 1661708656
effective search space used: 1661708656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)