ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0529 suspect: LH S KOG1426 Function unknown FOG: RCC1 domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0529 179541 177742 -600
(600 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
7295603 [S] KOG1426 FOG: RCC1 domain 62 2e-09
Hs4758520 [S] KOG1426 FOG: RCC1 domain 57 1e-07
>7295603 [S] KOG1426 FOG: RCC1 domain
Length = 4669
Score = 62.0 bits (149), Expect = 2e-09
Identities = 68/262 (25%), Positives = 115/262 (42%), Gaps = 46/262 (17%)
Query: 329 VRFVAVSSGRSHFLALDDKNDLYSW----DGREVNHGVKLIFNDLPMRSTN----PILKI 380
V+ VAV+SG H LAL + ++Y+W DG+ + HG ++ + D P + + I
Sbjct: 4136 VKKVAVNSGGKHCLALTTEGEVYAWGEGEDGK-LGHGNRMSY-DRPKLVEHLNGMSVADI 4193
Query: 381 SCGWNCNCIFIYGVGLVVW-KSRDTTVGFDGFANAHYKVIPNTGEVNGANKIVDFACGSD 439
+CG + ++ W K R G G ++ ++ P E + +D ACGS
Sbjct: 4194 ACGSAHSAAITASGHVLTWGKGR---YGRLGHGDSEDQLRPKLVEALLGYRAIDIACGSG 4250
Query: 440 NAVFYITNEGEKLWLYSN------------------EIEKYIDLPIEGKMVKVQASNN-T 480
+A + + +W + + +IE L + VKV+ + +
Sbjct: 4251 DAQTLCITDDDNVWSWGDGDYGKLGRGGSDGCKLPYKIESLAGLGV----VKVECGSQFS 4306
Query: 481 LAIFTSDTCYTVEIKD-SEVAHNTLT------KIEITPNVKIISLSFGDYHGIALSDTGD 533
+A+ S YT D + H ++ K+ KIIS++ G H +A SD+G+
Sbjct: 4307 VALTKSGAVYTWGKGDFHRLGHGSVDHVRRPKKVAALQGKKIISIATGSLHCVACSDSGE 4366
Query: 534 MYTWGLESEMCGCLGLGKPESI 555
+YTWG E G LG G +I
Sbjct: 4367 VYTWGDNDE--GQLGDGTVTAI 4386
>Hs4758520 [S] KOG1426 FOG: RCC1 domain
Length = 4834
Score = 56.6 bits (135), Expect = 1e-07
Identities = 66/259 (25%), Positives = 114/259 (43%), Gaps = 40/259 (15%)
Query: 329 VRFVAVSSGRSHFLALDDKNDLYSW----DGREVNHGVKLIFNDLP-----MRSTNPILK 379
++ VAV+SG H LAL + ++YSW DG+ + HG + D P +R +
Sbjct: 4039 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGK-LGHGNRSPC-DRPRVIESLRGIEVVDV 4096
Query: 380 ISCGWNCNCIFIYGVGLVVW-KSRDTTVGFDGFANAHYKVIPNTGEVNGANKIVDFACGS 438
+ G + C+ G L W K R G G +++ ++ P E +++VD ACGS
Sbjct: 4097 AAGGAHSACVTAAG-DLYTWGKGR---YGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 4152
Query: 439 DNAVFYITNEGEKLWLYSN--------------EIEKYIDLPIEGKMVKVQ-ASNNTLAI 483
+A + + +W + + ++ ID +VKV+ S ++A+
Sbjct: 4153 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 4212
Query: 484 FTSDTCYTVEIKD-SEVAHNTLTKIEITPNV------KIISLSFGDYHGIALSDTGDMYT 536
S YT D + H + + V K+I+++ G H + ++ G++YT
Sbjct: 4213 TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 4272
Query: 537 WGLESEMCGCLGLGKPESI 555
WG E G LG G +I
Sbjct: 4273 WGDNDE--GQLGDGTTNAI 4289
Score = 51.6 bits (122), Expect = 3e-06
Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 46/270 (17%)
Query: 332 VAVSSGRSHFLALDDKNDLYSW---DGREVNHG-------VKLIFNDLPMRSTNPILKIS 381
+A S H+LAL ++YSW DG + HG K+I ++ ++ I+
Sbjct: 498 IAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIA 557
Query: 382 CGWNCNCIFIYGVGLVVWKSRDTTVGFDGFANAHYKVIPNTGEVNGANKIVDFACGSDNA 441
CG + L W + G G ++ + IP K++D ACGS +A
Sbjct: 558 CGSTYSAAITAEGELYTWGRGN--YGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDA 615
Query: 442 VFYITNEGEKLWLYSNE------------------IEKYIDLPIEGKMVKVQASNNTLAI 483
E ++W + + IEK DL + VKV+ +
Sbjct: 616 QTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDV----VKVRCGSQFSIA 671
Query: 484 FTSD-TCYTVEIKDSE-VAHNTLTKI------EITPNVKIISLSFGDYHGIALSDTGDMY 535
T D Y+ D++ + H T + E K+I ++ G H +AL++ +++
Sbjct: 672 LTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVH 731
Query: 536 TWGLESEMC---GCLGLGKPESIVSSGAGT 562
+WG ++ C L + KPE G T
Sbjct: 732 SWG-SNDQCQHFDTLRVTKPEPAALPGLDT 760
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,643,564
Number of Sequences: 60738
Number of extensions: 1772864
Number of successful extensions: 4369
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4315
Number of HSP's gapped (non-prelim): 39
length of query: 600
length of database: 30,389,216
effective HSP length: 112
effective length of query: 488
effective length of database: 23,586,560
effective search space: 11510241280
effective search space used: 11510241280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)