ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI0551   suspect: LH   J     KOG4756  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein L27

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI0551  185846  186280 145  
         (145 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YBR282w [J] KOG4756 Mitochondrial ribosomal protein L27               183   6e-47

>YBR282w [J] KOG4756 Mitochondrial ribosomal protein L27
          Length = 146

 Score =  183 bits (465), Expect = 6e-47
 Identities = 86/146 (58%), Positives = 108/146 (73%), Gaps = 1/146 (0%)

Query: 1   MKPTSARFFQQSQITQLTRPWKKYRDGTLFYGASKVGNKRVPLTTKDGNKSMYKGTRSSG 60
           MK +    F ++ I  LTRPWKKYRDG LFYG SKVGNKRVPLTTK GNK+MYKGTR+SG
Sbjct: 1   MKGSPISQFSKTSINALTRPWKKYRDGELFYGLSKVGNKRVPLTTKQGNKTMYKGTRASG 60

Query: 61  IGRHTQYGGYKINWNRVRTYTVPKDFNTDLKPLLSHNLPELKHQFSGYQKGYTDPKLYFD 120
           IGRHT++GGY INW +VRTY  P   N +LKP ++ N+P LKH+F G+  G  DP+L   
Sbjct: 61  IGRHTKFGGYVINWKKVRTYVTPDMVNFELKPYVNANVPPLKHEFKGFSGGPLDPRLQLL 120

Query: 121 KLKKYVKEGKIQSE-ASNVESYVERG 145
           K+K+Y+  G++QSE A++   Y ERG
Sbjct: 121 KIKEYIVNGRVQSEGATDTSCYKERG 146


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.314    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,417,175
Number of Sequences: 60738
Number of extensions: 410275
Number of successful extensions: 697
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 1
length of query: 145
length of database: 30,389,216
effective HSP length: 96
effective length of query: 49
effective length of database: 24,558,368
effective search space: 1203360032
effective search space used: 1203360032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)