ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0586 suspect: LH A KOG4046 RNA processing and modification RNase MRP and P, subunit POP4/p29
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0586 198956 198135 -274
(274 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR257w [A] KOG4046 RNase MRP and P subunit POP4/p29 271 7e-73
Hs5729986 [A] KOG4046 RNase MRP and P subunit POP4/p29 50 3e-06
>YBR257w [A] KOG4046 RNase MRP and P subunit POP4/p29
Length = 279
Score = 271 bits (693), Expect = 7e-73
Identities = 137/282 (48%), Positives = 175/282 (61%), Gaps = 14/282 (4%)
Query: 1 MDRIQPFIEECLFTKCFDNPRKPINENRLTQTLFLMPTDGGXXXXXXXXXXXXXXXXXXM 60
MDR Q FI++CLFTKC ++P KP NENR TL L+PTDGG +
Sbjct: 1 MDRTQTFIKDCLFTKCLEDPEKPFNENRFQDTLLLLPTDGGLTSRLQRQQRKSKLNLDNL 60
Query: 61 -------GGSAGLKHPNYKAVNKNSRVLLKEYINKCNNASASCKKLAKRLKISDRDQLQR 113
L+ +Y+ +NKNS++ L+EYIN C + C KLA KI+D++ L
Sbjct: 61 QKVSQLESADKQLEKRDYQRINKNSKIALREYINNCKKNTKKCLKLAYENKITDKEDLLH 120
Query: 114 VLEEKHKDLLEQLPNFETFSSMFEDIWCPYMKELLNIPDNHKVGNPLPLNSQQTLIKLSM 173
+EEKH + E LP + F M++++W Y+KELLNI N K N L+KLSM
Sbjct: 121 YIEEKHPTIYESLPQYVDFVPMYKELWINYIKELLNITKNLKT-----FNGSLALLKLSM 175
Query: 174 ADYNGCXXXXXXXXXXXXTGKNGIVIWDAQKTFIIITKGGLVDELKSIPKKGTTFDFEIP 233
ADYNG G GIVIWD+QK FI+I KG ++DE+K IPKKGT F FEIP
Sbjct: 176 ADYNGALLRVTKSKNKTLIGLQGIVIWDSQKFFIMIVKGNIIDEIKCIPKKGTVFQFEIP 235
Query: 234 INEEE--SLAYTILGDRFKYRSVDRAGRKFKSRRCDDLLYYI 273
I++++ +L Y+ILGDRFKYRSVDRAGRKFKSRRCDD+LYYI
Sbjct: 236 ISDDDDSALRYSILGDRFKYRSVDRAGRKFKSRRCDDMLYYI 277
>Hs5729986 [A] KOG4046 RNase MRP and P subunit POP4/p29
Length = 220
Score = 50.1 bits (118), Expect = 3e-06
Identities = 47/173 (27%), Positives = 71/173 (40%), Gaps = 22/173 (12%)
Query: 97 KKLAKRLKISDRDQLQRVLEEKHKDLLEQLPNFETFSSMFEDIWCPYMKELLNIPDNHKV 156
KK AK L R +L+ D+ + + F + E +W Y+++L +
Sbjct: 70 KKKAKGLSARQRRELRLF------DIKPEQQRYSLFLPLHE-LWKQYIRDLCS------- 115
Query: 157 GNPLPLNSQQTLIKLSMADYNGCXXXXXXXXXXXXTGKNGIVIWDAQKTFIIITKGGLVD 216
G Q KL AD +G G GI++ + + F IITK D
Sbjct: 116 GLKPDTQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITK---ED 172
Query: 217 ELKSIPKKGTTFDFEIPINEEESLAYTILGDRFKYRSVDRAGRKFKSRRCDDL 269
LK IPK F E + I G +F+ RS +R+ +KFK++ DL
Sbjct: 173 RLKVIPKLNCVFTV-----ETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL 220
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.139 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,674,932
Number of Sequences: 60738
Number of extensions: 607224
Number of successful extensions: 1635
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 2
length of query: 274
length of database: 30,389,216
effective HSP length: 105
effective length of query: 169
effective length of database: 24,011,726
effective search space: 4057981694
effective search space used: 4057981694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)