ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0664 good AB KOG2441 Chromatin structure and dynamics mRNA splicing factor/probable chromatin binding snw family nuclear protein
r_klactVI0664 good AB KOG2441 RNA processing and modification mRNA splicing factor/probable chromatin binding snw family nuclear protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0664 226041 224752 -430
(430 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YAL032c [AB] KOG2441 mRNA splicing factor/probable chromatin bin... 179 5e-45
Hs6912676 [AB] KOG2441 mRNA splicing factor/probable chromatin b... 116 7e-26
SPCC188.11 [AB] KOG2441 mRNA splicing factor/probable chromatin ... 115 1e-25
CE06519 [AB] KOG2441 mRNA splicing factor/probable chromatin bin... 114 3e-25
At1g77180 [AB] KOG2441 mRNA splicing factor/probable chromatin b... 100 4e-21
7291006 [AB] KOG2441 mRNA splicing factor/probable chromatin bin... 69 1e-11
Hs20475567_2 [AB] KOG2441 mRNA splicing factor/probable chromati... 61 4e-09
>YAL032c [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 379
Score = 179 bits (455), Expect = 5e-45
Identities = 116/406 (28%), Positives = 202/406 (49%), Gaps = 38/406 (9%)
Query: 7 SSLLPSPQNSEVSESSAFSRQSKENIKDTIILDKLRPENLPVASISDFVPLRQRDISLEA 66
S+ LP P++S+ S+A S + ++ I+ D++ + DF+P RQ + L
Sbjct: 3 SNRLPPPKHSQGRVSTALS---SDRVEPAILTDQIAKN----VKLDDFIPKRQSNFELSV 55
Query: 67 PFPSTSQINQTYVKTKAFXXXXXXXXXXXXXXXIANKDIVK-REAISSVKSGTQRSVKVI 125
P P+ ++I + +TK++ +++ + + +A +++ ++V+
Sbjct: 56 PLPTKAEIQECTARTKSYIQRLVNAKLANSNNRASSRYVTETHQAPANLLLNNSHHIEVV 115
Query: 126 EHKKDPLQP--VTHRKRKVVVPSEEIQA-PILHKSDDPSIKPTKEELDKWRIPSAISNWK 182
+ DPL P V + RKVV P+E + P+LH D S + + ++W+IP+A+SNWK
Sbjct: 116 SKQMDPLLPRFVGKKARKVVAPTENDEVVPVLHM--DGSNDRGEADPNEWKIPAAVSNWK 173
Query: 183 NPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSEALDEAEREARQRINIXXXXXXXXX 242
NPNG+ ++L+ RV D +N D F+ LSEAL+ A+++ARQ I
Sbjct: 174 NPNGYTVALERRVGKA---LDNENNTINDGFMKLSEALENADKKARQEIRSKMELKRLAM 230
Query: 243 XXXXXXXXXRLRHLAERARQDRENRRQYENEDHYVREMERNQRRRAERELERSNKMSTAE 302
+L+ L++RAR N + ++ + ST
Sbjct: 231 EQEMLAKESKLKELSQRARY-------------------HNGTPQTGAIVKPKKQTSTVA 271
Query: 303 KLRRLAYQQGRDVSDKVVLNAAKATETPDLQYDSRLFKK-XXXXXXXXXNQIFDHPLFNN 361
+L+ LAY QGRDVS+K++L AAK +E PDLQYDSR F + +Q++D+PLF
Sbjct: 272 RLKELAYSQGRDVSEKIILGAAKRSEQPDLQYDSRFFTRGANASAKRHEDQVYDNPLFVQ 331
Query: 362 SQIDNIYRPTTGSNLENEDIVDRLSNKKGRTGPVEFSAADDGKNAE 407
I++IY+ T +E + + G GP++F+ A+ ++
Sbjct: 332 QDIESIYK--TNYEKLDEAVNVKSEGASGSHGPIQFTKAESDDKSD 375
>Hs6912676 [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 536
Score = 116 bits (290), Expect = 7e-26
Identities = 83/317 (26%), Positives = 145/317 (45%), Gaps = 32/317 (10%)
Query: 108 REAISSVKSGTQRSVKVIEHKKDPLQPVTHR-KRKVVVPSEEIQAPILHKSDDPSIKPTK 166
++ ++ QR ++++E +KDP++P + +K+ AP++H PS K T
Sbjct: 183 QQGVAFNSGAKQRVIRMVEMQKDPMEPPRFKINKKIPRGPPSPPAPVMHS---PSRKMTV 239
Query: 167 EELDKWRIPSAISNWKNPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSEALDEAERE 226
+E +W+IP ISNWKN G+ I LD R+A + +NF L+EAL A+R+
Sbjct: 240 KEQQEWKIPPCISNWKNAKGYTIPLDKRLAADG--RGLQTVHINENFAKLAEALYIADRK 297
Query: 227 ARQRINIXXXXXXXXXXXXXXXXXXRLRHLAERARQDREN-RRQYENEDHYVREM-ERNQ 284
AR+ + + +LR +A++AR+ R + E ED RE E
Sbjct: 298 AREAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIRH 357
Query: 285 RRRAERELERSNKMSTAEKLRRLAYQQGRDVSDKVVLNAAKATETPDLQYDSRLFKKXXX 344
RR ER+ +R+ + +K +L + RD+S+ + L + ++QYD RLF +
Sbjct: 358 DRRKERQHDRNLSRAAPDKRSKLQRNENRDISEVIALGVPNPRTSNEVQYDQRLFNQSKG 417
Query: 345 XXXXXXN------QIFDHPLFNNSQI-DNIYRPTTG--SNLENEDIVDRLS--------- 386
++D + +IYRP+ ++ +D+ R+
Sbjct: 418 MDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSKNLDKDMYGDDLEARIKTNRFVPDKE 477
Query: 387 ------NKKGRTGPVEF 397
++GR GPV+F
Sbjct: 478 FSGSDRRQRGREGPVQF 494
>SPCC188.11 [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 557
Score = 115 bits (288), Expect = 1e-25
Identities = 100/375 (26%), Positives = 156/375 (40%), Gaps = 60/375 (16%)
Query: 49 ASISDFVPLRQR----DISLEAPFPSTSQ--INQTYVKTKAFXXXXXXXXXXXXXXXIAN 102
AS D +PLR R +ISLE P Q N+T + +
Sbjct: 119 ASFRDLIPLRARLGVGEISLEKPSDEQKQEVANKTKLALQKILSKQIAQSQPKSAVVQQR 178
Query: 103 KDIVKREAISSVKSGT----QRSVKVIEHKKDPLQPVTHRKRKVVVPSEEIQAPILHKSD 158
D V S + G QR +K++ ++DP++P R +KV P+LH
Sbjct: 179 DDPVYIRYTPSNQMGQALSKQRIIKMVTAEQDPMEPPKFRHKKVPRGPPSPPPPVLHS-- 236
Query: 159 DPSIKPTKEELDKWRIPSAISNWKNPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSE 218
P K + +E W+IP +ISNWKNP G+ I LD R+A + D + D F SE
Sbjct: 237 -PPRKVSAQEQQDWQIPPSISNWKNPKGYTIPLDKRLAADG--RGLNDVEINDGFAKFSE 293
Query: 219 ALDEAEREARQRINIXXXXXXXXXXXXXXXXXXRLRHLAERARQDRENRR---------- 268
AL ER+AR+ + RL LA++AR+DR R
Sbjct: 294 ALYTVERQAREEVRYRAIMRQKMAEKEKQEKEQRLFMLAQKAREDRMGRNAASSGPSHAK 353
Query: 269 -----------------------QYENED------HYVREMERNQRRRAERELERSNKMS 299
+ ENED +E+ R +RR+AE++L R ++M
Sbjct: 354 PRSTSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDL-RLSRMG 412
Query: 300 TAEKLRRLAYQQGRDVSDKVVLNAAKATETPDLQYDSRLFKKXXXXXXXXXNQ----IFD 355
++ + + RDV+++V L +K + + D DSRLF + ++ ++D
Sbjct: 413 AEKRAKLAEKDRPRDVAERVALGLSKPSMSSDTMIDSRLFNQASGLGSGFQDEDSYNVYD 472
Query: 356 HPLFNNSQIDNIYRP 370
P + + +YRP
Sbjct: 473 KP-WRAAPSSTLYRP 486
>CE06519 [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 535
Score = 114 bits (285), Expect = 3e-25
Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 32/317 (10%)
Query: 119 QRSVKVIEHKKDPLQPVTHR-KRKVVVPSEEIQAPILHKSDDPSIKPTKEELDKWRIPSA 177
QR ++++E +KDP++P + +K+ AP++H P K T ++ + W+IP
Sbjct: 197 QRIIRMVEEQKDPMEPPKFKINQKIPRAPPSPPAPVMHS---PPRKMTAKDQNDWKIPPC 253
Query: 178 ISNWKNPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSEALDEAEREARQRINIXXXX 237
ISNWKNP GF + LD R+A + +NF L++AL A+R+AR+ +
Sbjct: 254 ISNWKNPKGFTVGLDKRLAADG--RGLQQTHINENFAKLADALYIADRKAREEVETRAQL 311
Query: 238 XXXXXXXXXXXXXXRLRHLAERARQDRENRRQYENEDH---YVREMERNQRR---RAERE 291
++ A +ARQ+R R+ ++ED VRE R R R ER
Sbjct: 312 ERRVAQNKKSEQEAKMAEAAAKARQERSAMRRKDDEDDEQVKVREEIRRDRLDDIRKERN 371
Query: 292 LERSNKMSTAEKLRRLAYQQGRDVSDKVVLNAAKATE--TPDLQYDSRLFKKXXXXXXXX 349
+ RS + A+KLR+ ++ RD+S+K+VL + T + Q+D RLF K
Sbjct: 372 IARS-RPDKADKLRK---ERERDISEKIVLGLPDTNQKRTGEPQFDQRLFDKTQGLDSGA 427
Query: 350 XNQIFDHPL-----FNNSQIDNIYRPTTGSNLENE---DIVDRLSNKKGR-TGPVEFSAA 400
+ +P +S ++YRP+ NL+N+ +D++ +K R FS A
Sbjct: 428 MDDDTYNPYDAAWRGGDSVQQHVYRPS--KNLDNDVYGGDLDKIIEQKNRFVADKGFSGA 485
Query: 401 DD---GKNAEQNEEDNE 414
+ G Q E+D +
Sbjct: 486 EGSSRGSGPVQFEKDQD 502
>At1g77180 [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 613
Score = 100 bits (249), Expect = 4e-21
Identities = 96/368 (26%), Positives = 155/368 (42%), Gaps = 62/368 (16%)
Query: 112 SSVKSGT-QRSVKVIEHKKDPLQPVTHRKRKVVVPSEEIQAPILHKSDDPSIKPTKEELD 170
S+ SG +R ++++E DPL P + ++V S P++H P T ++
Sbjct: 198 SAFNSGAKERIIRMVEMPVDPLDPPKFKHKRVPRASGSPPVPVMHSPPRPV---TVKDQQ 254
Query: 171 KWRIPSAISNWKNPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSEALDEAEREARQR 230
W+IP ISNWKNP G+ I LD R+A + D DNF LSEAL AE++AR+
Sbjct: 255 DWKIPPCISNWKNPKGYTIPLDKRLAADG--RGLQDVQINDNFAKLSEALYVAEQKAREA 312
Query: 231 INIXXXXXXXXXXXXXXXXXXRLRHLAERARQDR-------------------ENRRQYE 271
+++ LR LA++AR +R + R Y+
Sbjct: 313 VSMRSKVQKEMVMKDKERKEQELRALAQKARSERTGAAMSMPVSSDRGRSESVDPRGDYD 372
Query: 272 NEDH-YVREMER-------------------NQRRRAERELER--SNKMSTAEKLRRLAY 309
N D RE ER + RR ERE ER K + K ++
Sbjct: 373 NYDQDRGREREREEPQETREEREKRIQREKIREERRRERERERRLDAKDAAMGKKSKITR 432
Query: 310 QQGRDVSDKVVLNAAK--ATETPDLQYDSRLFK--KXXXXXXXXXNQ--IFDHPLFN-NS 362
+ RD+S+KV L A ++ YD RLF K +Q ++D LF
Sbjct: 433 DRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKGMDSGFAADDQYNLYDKGLFTAQP 492
Query: 363 QIDNIYRPTTGSNLE----NEDIVDRLSNKKGRTGPVEFSAADDGKNAEQNE----EDNE 414
+ +Y+P ++ E ++ +D++ N + F+ A + ++++ E E
Sbjct: 493 TLSTLYKPKKDNDEEMYGNADEQLDKIKNTERFKPDKAFTGASERVGSKRDRPVEFEKEE 552
Query: 415 HAREYGLQ 422
+GL+
Sbjct: 553 EQDPFGLE 560
>7291006 [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 360
Score = 68.9 bits (167), Expect = 1e-11
Identities = 41/114 (35%), Positives = 65/114 (56%), Gaps = 6/114 (5%)
Query: 119 QRSVKVIEHKKDPLQPVTHR-KRKVVVPSEEIQAPILHKSDDPSIKPTKEELDKWRIPSA 177
QR ++++E + DP++P R +K+ AP+LH PS K T +E +W+IP
Sbjct: 197 QRVIRMVEAQLDPMEPPKFRINKKIPRGPPSPPAPVLHS---PSRKVTVKEQKEWKIPPC 253
Query: 178 ISNWKNPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSEALDEAEREARQRI 231
ISNWKN G+ I LD R+A + ++K F ++EAL A+R+AR+ +
Sbjct: 254 ISNWKNAKGYTIPLDKRLAADGRGLQQVHINEK--FAKMAEALYIADRKAREAV 305
>Hs20475567_2 [AB] KOG2441 mRNA splicing factor/probable chromatin binding snw
family nuclear protein
Length = 320
Score = 60.8 bits (146), Expect = 4e-09
Identities = 54/208 (25%), Positives = 94/208 (44%), Gaps = 21/208 (10%)
Query: 119 QRSVKVIEHKKDPLQPVTHRKRKVVV---PSEEIQAPILHKSDDPSIKPTKEELDKWRIP 175
QR +++E +KDP +P + K + PS + P++H P+++ + P
Sbjct: 124 QRVSRMVEVQKDPTEPPRFKINKKIPRGPPSPPV--PVMHS-------PSRKMI----FP 170
Query: 176 SAISNWKNPNGFAISLDNRVAIESIKTDCPDNDKKDNFLLLSEALDEAEREARQRINIXX 235
ISNWKN G+ I LD R+A E K+N L L A+++A + + +
Sbjct: 171 PFISNWKNAKGYTIPLDKRLAAEG--RGLQTVHIKENVATL-VILYIADQKACEAVEMRA 227
Query: 236 XXXXXXXXXXXXXXXXRLRHLAERARQDREN-RRQYENEDHYVREM-ERNQRRRAERELE 293
+LR +A++AR+ R + E ED RE E RR ER+ +
Sbjct: 228 RVERKMAQKEKGKYEEKLREMAQKARERRAGIKTHVEKEDREARERNEIRHDRRKERQHD 287
Query: 294 RSNKMSTAEKLRRLAYQQGRDVSDKVVL 321
++ + +K +L + D+S+ + L
Sbjct: 288 QNLSRAAPDKRSKLQRNENGDISEVIAL 315
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.311 0.129 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,022,775
Number of Sequences: 60738
Number of extensions: 943356
Number of successful extensions: 4051
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4024
Number of HSP's gapped (non-prelim): 9
length of query: 430
length of database: 30,389,216
effective HSP length: 109
effective length of query: 321
effective length of database: 23,768,774
effective search space: 7629776454
effective search space used: 7629776454
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)