ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactVI0755   suspect: LH   O     KOG0191  Posttranslational modification, protein turnover, chaperones   Thioredoxin/protein disulfide isomerase

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactVI0755  257873 257094 -260 
         (260 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YOL088c [O] KOG0191 Thioredoxin/protein disulfide isomerase           120   3e-27

>YOL088c [O] KOG0191 Thioredoxin/protein disulfide isomerase
          Length = 277

 Score =  120 bits (300), Expect = 3e-27
 Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 33/279 (11%)

Query: 4   LLCLSLIATVALAIVESVT---SLDQFYGVVNNFNATNPTYTVVKYYTNWCSHCKKLKPV 60
           +L   ++   ALA  E+VT   S++Q++ + N     N +YT++KYYT+WC HCK L PV
Sbjct: 10  VLSTCVVILPALAYSEAVTMVKSIEQYFDICNR----NDSYTMIKYYTSWCQHCKTLAPV 65

Query: 61  FEQXXXXXXXXXXDIVDPALTSGINFAFFEVDCELFGNMLCKRLDGFPAVEIIKPLRSEL 120
           +E+              P     IN  F EV+CE FG  LC  L GFP +E++KP    L
Sbjct: 66  YEELGELYAKKANKDDTP-----IN--FLEVNCEFFGPTLCTDLPGFPIIELVKPRTKPL 118

Query: 121 NVTRLE-DPRGWIDRLLDTITNAGYDLTWTLDTDRIVTFNGRRNLDVFERFVQAVVTSDQ 179
            + +L+     + +RL   I     +  + LDT R+V F G RNL     F+  V + D 
Sbjct: 119 VLPKLDWSSMKFHERLWQRIKTWFNNPKYQLDTSRVVRFEGSRNLKSLSNFIDTVRSKDT 178

Query: 180 WDRVLQLIVND--NCSD----KDELCEDGREYF----LKMNDETNCAEK-----IADIEN 224
            +R ++ I +D  NC++    +  LC+ G+EY+     K+  + N  EK      A I+ 
Sbjct: 179 EERFIEHIFDDSRNCNEELRSQQLLCKAGKEYYSDTLSKLYGDVNGLEKERRRLEALIKQ 238

Query: 225 EMKDL-KDVPKDLMLRYMILNKISELNN--EEPLEQDEL 260
              DL K+V + L +  + L+ +S + +  E+    DEL
Sbjct: 239 NGDDLSKEVKEKLKIIRLQLSLLSHIEDQLEDTSSHDEL 277


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,128,584
Number of Sequences: 60738
Number of extensions: 626769
Number of successful extensions: 1935
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1933
Number of HSP's gapped (non-prelim): 1
length of query: 260
length of database: 30,389,216
effective HSP length: 104
effective length of query: 156
effective length of database: 24,072,464
effective search space: 3755304384
effective search space used: 3755304384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)