ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0821 good J KOG1076 Translation, ribosomal structure and biogenesis Translation initiation factor 3, subunit c (eIF-3c)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0821 282614 280158 -819
(819 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR309c [J] KOG1076 Translation initiation factor 3 subunit c (e... 786 0.0
SPAC4A8.16c [J] KOG1076 Translation initiation factor 3 subunit ... 333 6e-91
At3g56150 [J] KOG1076 Translation initiation factor 3 subunit c ... 291 4e-78
At3g22860 [J] KOG1076 Translation initiation factor 3 subunit c ... 265 2e-70
Hs4503525 [J] KOG1076 Translation initiation factor 3 subunit c ... 236 1e-61
7302740 [J] KOG1076 Translation initiation factor 3 subunit c (e... 219 2e-56
CE18958 [J] KOG1076 Translation initiation factor 3 subunit c (e... 214 4e-55
>YMR309c [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 812
Score = 786 bits (2029), Expect = 0.0
Identities = 427/824 (51%), Positives = 535/824 (64%), Gaps = 26/824 (3%)
Query: 1 MSRFFLKTYEYD-----STXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 55
MSRFF YEYD S
Sbjct: 1 MSRFFSSNYEYDVASSSSEEDLLSSSEEDLLSSSSSESELDQESDDSFFNESESESEADV 60
Query: 56 XXXXXXXKPYGPDWFKKPEFRKGGGSGANKFLKSTNYXXXXXXXXXXXGKKVVKSAKEKL 115
KPYGPDWFKK EFRK GG G+NKFLKS+NY GKKVVKSAKEKL
Sbjct: 61 DSDDSDAKPYGPDWFKKSEFRKQGG-GSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKL 119
Query: 116 LDEMKSIYQKIDSAEAQQDWESLLNHLETILKLYTKAQQQNYGTPNIFVKSLARFEDAVS 175
LDEM+ +Y KI AE DW ++ N + I +L +AQQQN+GTPNIF+K +A+ EDAV+
Sbjct: 120 LDEMQDVYNKISQAENSDDWLTISNEFDLISRLLVRAQQQNWGTPNIFIKVVAQVEDAVN 179
Query: 176 ATSQDEIKNKAVARAYNTTKQRVKKLIRENETSVKAYRENPEDFDKEPVLDADIDSRDVS 235
T Q ++KNKAVARAYNTTKQRVKK+ RENE S+ +R +PE FDKEP D DI S
Sbjct: 180 NTQQADLKNKAVARAYNTTKQRVKKVSRENEDSMAKFRNDPESFDKEPTADLDI-----S 234
Query: 236 ATPFSLSGKKNLDLASVANNISELDFFKTLNIIIDSRGKKNTDHTEQIKTTEELLKIAKT 295
A F++S + D A + DFF L IIDSRGKK + I T EELL +A+
Sbjct: 235 ANGFTISSSQGNDQAV------QEDFFTRLQTIIDSRGKKTVNQQSLISTLEELLTVAEK 288
Query: 296 PYEKICTYLNLIPIRFDASVSLSYQPLEQWKASKDNLDGLLEVLEQEIDHYQVTEFAPRN 355
PYE I YL LIP RFDAS +LSYQP++QWK+S +++ LL +L+Q ID YQV EFA
Sbjct: 289 PYEFIMAYLTLIPSRFDASANLSYQPIDQWKSSFNDISKLLSILDQTIDTYQVNEFADPI 348
Query: 356 DFIEDEPEANEHGVKEILGSIFSMVERLDDEFSKSLLNIDTRSSEYMERLRDEQSIYNLI 415
DFIEDEP+ + GVK ILGSIFS VERLDDEF KSLLNID SS+Y+ RLRDEQSIYNLI
Sbjct: 349 DFIEDEPKEDSDGVKRILGSIFSFVERLDDEFMKSLLNIDPHSSDYLIRLRDEQSIYNLI 408
Query: 416 IRSQLYFERVTAEEHR-DRLLARVFNRRLEHIYYKSDKLISIMETVAWKQIREGTASLES 474
+R+QLYFE +EH +R L R F +RL+HIYYKS+ LI IMET AW I A +S
Sbjct: 409 LRTQLYFEATLKDEHDLERALTRPFVKRLDHIYYKSENLIKIMETAAWNII---PAQFKS 465
Query: 475 SFVRLNESDSADADYNFKVISELSDFLIKQKSNNVFNYRKGTLYKTYYIALNQEYAPAKK 534
F ++ DSAD Y +I LS L KQ NN+ ++ LY YY ALN+++ AK
Sbjct: 466 KFTSKDQLDSAD--YVDNLIDGLSTILSKQ--NNIAVQKRAILYNIYYTALNKDFQTAKD 521
Query: 535 IMLSSDIAKFISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLNGLCINPHLREILG 594
++L+S + I+ D++LQIL+NR V+QLGL+AFK LI ECHQ+LN L + HLREILG
Sbjct: 522 MLLTSQVQTNINQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILG 581
Query: 595 QQSLQRANANS-NVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLLLDVPHMAAYYSGIK 653
QQSL R + NS N + CLP+HQHINLDLID V++TCSLL+++P M A+YSGIK
Sbjct: 582 QQSLHRISLNSSNNASADERARQCLPYHQHINLDLIDVVFLTCSLLIEIPRMTAFYSGIK 641
Query: 654 VKRIPVFQKSIRRILESSEKAIFHGPPETLRDHILYAAKSMQKGDYLQSIEYLRKISVWS 713
VKRIP KSIRR LE +K F GPPETLRD++L+AAKSMQKG++ S++YLR+I W+
Sbjct: 642 VKRIPYSPKSIRRSLEHYDKLSFQGPPETLRDYVLFAAKSMQKGNWRDSVKYLREIKSWA 701
Query: 714 LLSKSDDIINQLSEKVQIETLKTYIFTYKRFYXXXXXXXXXXXFDLDIEKVLAVAQNIIN 773
LL + ++N L+E+VQ+E+LKTY F++KRFY FDL KV+ V Q++I
Sbjct: 702 LLPNMETVLNSLTERVQVESLKTYFFSFKRFYSSFSVAKLAELFDLPENKVVEVLQSVIA 761
Query: 774 DYEVKAKLDENNEYIIFERGEEITKLEEVAIKLVKETKYHSERL 817
+ E+ AKL++ + E+G+EITKLEE +KL KE K ERL
Sbjct: 762 ELEIPAKLNDEKTIFVVEKGDEITKLEEAMVKLNKEYKIAKERL 805
>SPAC4A8.16c [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 639
Score = 333 bits (854), Expect = 6e-91
Identities = 196/572 (34%), Positives = 314/572 (54%), Gaps = 36/572 (6%)
Query: 256 ISELDFFKTLNIIIDSRGKKNTDHTEQIKTTEELLKIAKTPYEKICTYLNLIPIRFDASV 315
I+ D FK L I ++RGKK+TD +EQI+ E+L IA T Y+++ + L+ +RFD +
Sbjct: 49 ITPADIFKYLRAIFEARGKKSTDRSEQIRLLEKLSTIAVTDYQRLRVKVALLAVRFDINT 108
Query: 316 -SLSYQPLEQWKASKDNLDGLLEVLEQEIDHYQVTEFAPRNDFIEDEPEA-----NEHGV 369
S Y P++QW A+ L +L++ + V + N E+E EA N +GV
Sbjct: 109 GSGQYMPIDQWNAALTELHSILDIFDANPKIVIVEQVEDEN---EEEEEAIAAAENNNGV 165
Query: 370 KEILGSIFSMVERLDDEFSKSLLNIDTRSSEYMERLRDEQSIYNLIIRSQLYFERVTAEE 429
++ GS+ S +ERLDDEF++SL ID + EY++RL+DE S+Y L++RSQ Y ER+ E
Sbjct: 166 IQVQGSVVSFLERLDDEFTRSLQMIDPHTPEYIDRLKDETSLYTLLVRSQGYLERIGVVE 225
Query: 430 HRDRLLARVFNRRLEHIYYKSDKLISIMETVAWKQIREGTASLESSFVRLNESDSADADY 489
+ RL+ R RL+ +YYK +++I E VAW+ S +F D
Sbjct: 226 NTARLIMR----RLDRVYYKPEQVIRANEEVAWR-------SFPPTF---------DLTI 265
Query: 490 NFKVISELSDFLIKQKSNNVFNY------RKGTLYKTYYIALNQEYAPAKKIMLSSDIAK 543
+ + D LI ++N + L Y+ AL + A+ ++L S +
Sbjct: 266 TPRATTTTPDILIHSLCVYLYNNGVSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQD 325
Query: 544 FISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLNGLCINPHLREILGQQSLQRANA 603
+ +D A QIL+NR ++Q+GL AF+ G++ E L + ++E+LGQ
Sbjct: 326 SVHAADIATQILHNRTMVQIGLCAFRNGMVQETQYALQDISTTGRVKELLGQGIQAPKFG 385
Query: 604 NSNVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLLLDVPHMAAYYSGIKVKRIPVFQKS 663
Q +QL LPFH HINL+L++ VY+TCS+L+++P MAA S R V +
Sbjct: 386 QFTPDQDRLDKQLVLPFHMHINLELLECVYLTCSMLMEIPAMAAASSTASDSRKRVISRP 445
Query: 664 IRRILESSEKAIFHGPPETLRDHILYAAKSMQKGDYLQSIEYLRKISVWSLLSKSDDIIN 723
RR+LE ++ +F GPPE R++I+ A+K++ G++ + E++ I +WSL+ +D I
Sbjct: 446 FRRMLEYIDRQLFVGPPENTREYIMQASKALADGEWRRCEEFIHAIKIWSLMPDADKIKQ 505
Query: 724 QLSEKVQIETLKTYIFTYKRFYXXXXXXXXXXXFDLDIEKVLAVAQNIINDYEVKAKLDE 783
LSEK++ E L+TY+ Y FY FDL +++V + +++ E+ A LD+
Sbjct: 506 MLSEKIREEGLRTYLLAYAAFYDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQ 565
Query: 784 NNEYIIFERGEEITKLEEVAIKLVKETKYHSE 815
+ IIFER EI KLE + + L ++T +E
Sbjct: 566 VHGAIIFER-VEINKLESLTVSLSEKTAQLNE 596
>At3g56150 [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 900
Score = 291 bits (744), Expect = 4e-78
Identities = 219/765 (28%), Positives = 371/765 (47%), Gaps = 72/765 (9%)
Query: 105 KKVVKSAKEKLLDEMKSIYQKIDSAEAQQDWESLLNHLETILKLYTKAQQ--QNYGTPNI 162
K+VVK AK+K +EM ++ +A DW SL + + + K K + + P +
Sbjct: 49 KRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEAVKPPTL 108
Query: 163 FVKSLARFEDAVS-ATSQDEIKNK---AVARAYNTTKQRVKKLIRENETSVKAYRENPE- 217
++K+L ED ++ A + E K K + ++A N+ KQ++KK + E + YRE PE
Sbjct: 109 YIKTLVMLEDFLNEALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYEDDINKYREAPEV 168
Query: 218 -------------DFDKE-----------PVLD--ADIDSRDVSATPFSLSGKKNLDLAS 251
D D E P +D +D+D + T + KK+ L
Sbjct: 169 EEEKQPEDDDDDDDDDDEVEDDDDSSIDGPTVDPGSDVDEPTDNLTWEKMLSKKDKLLEK 228
Query: 252 VAN-NISELDFF---KTLNIIIDSRGKKNTDHTEQIKTTEELLKIAKTPYEKICTYLNLI 307
+ N + E+ + K I+ +RGKK T E + L KIAKTP +K+ ++I
Sbjct: 229 LMNKDPKEITWDWVNKKFKEIVAARGKKGTARFELVDQLTHLTKIAKTPAQKLEILFSVI 288
Query: 308 PIRFDASVSLS-YQPLEQWKASKDNLDGLLEVLEQEIDHYQVTEFAPRNDFIEDEPEANE 366
+FD + LS + P+ WK N+ +L++L + + V + D E +
Sbjct: 289 SAQFDVNPGLSGHMPINVWKKCVLNMLTILDILVKYSNI--VVDDTVEPDENETSKPTDY 346
Query: 367 HGVKEILGSIFSMVERLDDEFSKSLLNIDTRSSEYMERLRDEQSIYNLIIRSQLYFERVT 426
G + G++ + +ER+D EF KSL ID + EY+ERLRDE L Q YFER+
Sbjct: 347 DGKIRVWGNLVAFLERVDTEFFKSLQCIDPHTREYVERLRDEPMFLALAQNIQDYFERMG 406
Query: 427 AEEHRDRLLARVFNRRLEHIYYKSDKLISIMETVAWKQIREGTASLESSFVRLNESDSAD 486
+ A+V RR+E IYYK ++ M +A ++ E E + + +
Sbjct: 407 DF----KAAAKVALRRVEAIYYKPQEVYDAMRKLA--ELVEEEEETEEA------KEESG 454
Query: 487 ADYNFKVISE--------------LSDFLIK--QKSNNVFNYRKGTLYKTYYIALNQEYA 530
+F V+ E + D L+ ++ + + L + AL +
Sbjct: 455 PPTSFIVVPEVVPRKPTFPESSRAMMDILVSLIYRNGDERTKARAMLCDINHHALMDNFV 514
Query: 531 PAKKIMLSSDIAKFISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLNGLCINPHLR 590
A+ ++L S + I D + QIL+NR + QLGL AF+AG+I E H L+ L +R
Sbjct: 515 TARDLLLMSHLQDNIQHMDISTQILFNRTMAQLGLCAFRAGMITESHSCLSELYSGQRVR 574
Query: 591 EILGQQSLQRANANSNVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLLLDVPHMAAYYS 650
E+L Q Q Q + +P+H H+NL+L++ V++ C++LL+VP+MAA
Sbjct: 575 ELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHLNLELLEAVHLICAMLLEVPNMAANSH 634
Query: 651 GIKVKRIPVFQKSIRRILESSEKAIFHGPPETLRDHILYAAKSMQKGDYLQSIEYLRKIS 710
K + V K+ RR+LE SE+ F PPE +RDH++ A +++ KGD+ ++ E L +
Sbjct: 635 DAKRR---VISKNFRRLLEISERQAFTAPPENVRDHVMAATRALTKGDFQKAFEVLNSLE 691
Query: 711 VWSLLSKSDDIINQLSEKVQIETLKTYIFTYKRFYXXXXXXXXXXXFDLDIEKVLAVAQN 770
VW LL D I++ + ++++ E L+TY+FTY Y FD+ +V ++
Sbjct: 692 VWRLLKNRDSILDMVKDRIKEEALRTYLFTYSSSYESLSLDQLAKMFDVSEPQVHSIVSK 751
Query: 771 IINDYEVKAKLDENNEYIIFERGEEITKLEEVAIKLVKETKYHSE 815
++ + E+ A D+ I+F + ++L+ +A +L ++ +E
Sbjct: 752 MMINEELHASWDQPTRCIVFHEVQH-SRLQSLAFQLTEKLSILAE 795
>At3g22860 [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 800
Score = 265 bits (677), Expect = 2e-70
Identities = 203/711 (28%), Positives = 352/711 (48%), Gaps = 54/711 (7%)
Query: 105 KKVVKSAKEKLLDEMKSIYQKIDSAEAQQDWESLLNHLETILKLYTKAQQQNYGTPNIFV 164
K+VVK K+K +EM + + + A D L E + K +K+ + TP +++
Sbjct: 44 KRVVKPKKDKRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISKSVK----TPTLYI 99
Query: 165 KSLARFEDAVSATSQDEIKNK-----AVARAYNTTKQRVKKLIRENETSVKAYRENPEDF 219
K+L ED ++ +D +K K + ++A N +Q++KK + + +K +RE+PE
Sbjct: 100 KTLVMLEDFLN---EDNMKTKEKMSTSNSKALNAMRQKLKKNNLQYQEDIKRFRESPEIE 156
Query: 220 DKEPVLDADIDSRDVSATPFSLSGKKNLDLASVANNISELDFFKTLNIIIDSRGKKNTDH 279
D + + ++ SA S +LD + N+ F + I +R K
Sbjct: 157 DDDEYEEEVVED---SADNVSWEMLFSLDHEEITWNMVNKKFKE----IRAARWSKRRSS 209
Query: 280 TEQIKTTE-------ELLKIAKTPYEKICTYLNLIPIRFDA-SVSLS-YQPLEQWKASKD 330
+ ++K E +L KIAKTP +K+ ++I F+ S LS Y P++ WK
Sbjct: 210 SLKLKPGETHAQKHMDLTKIAKTPAQKVEILFSVISAEFNVNSGGLSGYMPIDVWKKCVV 269
Query: 331 NLDGLLEVLEQEIDHYQVTEFAPRNDFIE-DEPEANE----HGVKEILGSIFSMVERLDD 385
N+ +L++L + +Y + +D +E DE E ++ G + G++ + +E+++
Sbjct: 270 NMLTILDIL---VKYYNIVV----DDTVEPDEKETSKPAAYDGTIRVSGNLVAFLEKIET 322
Query: 386 EFSKSLLNIDTRSSEYMERLRDEQSIYNLIIRSQLYFERVTAEEHRDRLLARVFNRRLEH 445
EF KSL ID +++Y+ERL+DE L Q Y ER T + +A + +E
Sbjct: 323 EFFKSLQCIDPHTNDYVERLKDEPMFLALAQSIQDYLER-TGDSKAASKVAFIL---VES 378
Query: 446 IYYKSDKLISIMETVAWKQIREG---TASLESSFVRLNESDSADADYNFKVISELSDFLI 502
IYYK ++ M +A ++I E + S SSF+ + E + K + D L+
Sbjct: 379 IYYKPQEVFDAMSKLADEEIEEANEESGSSSSSFIVVAEIVPRKPTFA-KSSRAMMDTLV 437
Query: 503 K--QKSNNVFNYRKGTLYKTYYIALNQEYAPAKKIMLSSDIAKFISGSDAALQILYNRCV 560
K+ + + L Y AL + A+ ++L S + + I D + QIL+NR +
Sbjct: 438 SFIYKNGDERTKARAMLCDIYQHALMDNFVTARDLLLMSHLQENIQHMDISTQILFNRTM 497
Query: 561 IQLGLAAFKAGLINECHQVLNGLCINPHLREILGQQSLQRANANSNVVQGAPVEQLCLPF 620
QLGL AF+ G+I E H L+ L +RE+LGQ Q + Q + +P+
Sbjct: 498 AQLGLCAFRVGMITESHSCLSELYSGNRVRELLGQGVSQSRDHEKTTEQMLMERRTQIPY 557
Query: 621 HQHINLDLIDTVYMTCSLLLDVPHMAAYYSGIKVKRIPVFQKSIRRILESSEKAIFHGPP 680
H +INL+L++ VY+TC++LL+VP+MAA K K I K+I+R+LE SEK F PP
Sbjct: 558 HMNINLELLEAVYLTCAMLLEVPNMAANSHDSKHKPI---SKNIQRLLEKSEKQAFTAPP 614
Query: 681 ETLRDHILYAAKSMQKGDYLQSIEYLRKISVWSLLSKSDDIINQLSEKVQIETLKTYIFT 740
E +R H++ A +++ KG++ ++ L + +W L D I++ + + L+TY+FT
Sbjct: 615 ENVRVHVIAATRALIKGNFQEAFSVLNSLDIWRLFKNRDSILDMVKASISEVALRTYLFT 674
Query: 741 Y-KRFYXXXXXXXXXXXFDLDIEKVLAVAQNIINDYEVKAKLDENNEYIIF 790
Y Y FD+ V ++ ++ + E+ A D+ + I+F
Sbjct: 675 YSSSCYKSLSLAELAKMFDISESHVYSIVSKMMINKELNATWDQPTQCIVF 725
>Hs4503525 [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 913
Score = 236 bits (602), Expect = 1e-61
Identities = 174/582 (29%), Positives = 288/582 (48%), Gaps = 47/582 (8%)
Query: 244 KKNLDLASVANNISELDFFKTLNIIIDSRGKKNTDHTEQIKTTEELLKIAKTPY--EKIC 301
K+ + + I+ K LN I+ +RGKK TD QI+ + L++IA E +
Sbjct: 312 KEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVI 371
Query: 302 TYL--NLIPIRFDASVSLS-YQPLEQWKASKDNLDGLLEVLEQEIDHYQVTEFAPRNDFI 358
+ N+I +D + +L+ Y E W D ++ L+++L FA N F+
Sbjct: 372 VKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDIL-----------FANPNIFV 420
Query: 359 ED---EPEANEHGVKEIL---GSIFSMVERLDDEFSKSLLNIDTRSSEYMERLRDEQSIY 412
+ E N H + L G I ++VER+D+EF+K + N D S EY+E L+DE +
Sbjct: 421 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC 480
Query: 413 NLIIRSQLYFE-RVTAEEHRDRLLARVFNRRLEHIYYKSDKLISIMETVAWKQIREGTAS 471
+I R Q Y E + T EE + R++ R+ H YYK D + EG++
Sbjct: 481 AIIERVQRYLEEKGTTEE-----VCRIYLLRILHTYYKFDYKAHQRQLTP----PEGSSK 531
Query: 472 LESSFVRLNESDSADADYNFKVISELSDFLIKQKSNNVFNYRKGTLYKTYYIALNQEYAP 531
E DSA V+ E I K L Y+ AL+ +
Sbjct: 532 SEQDQAENEGEDSA-------VLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQ 584
Query: 532 AKKIMLSSDIAKFISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLNGLCINPHLRE 591
A+ +ML S + I +D +QILYNR ++QLG+ AF+ GL + H L + + +E
Sbjct: 585 ARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKE 644
Query: 592 ILGQQSLQRANANSNVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLLLDVPHMAAYYSG 651
+LGQ L R+ N Q + +PFH HINL+L++ VY+ ++LL++P+MAA+ S
Sbjct: 645 LLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESD 704
Query: 652 IKVKRIPVFQKSIRRILESSEKAIFHGPPETLRDHILYAAKSMQKGDYLQSIEYL--RKI 709
+ + I K L E+ GPPE++R+H++ A+K+M+ GD+ ++ K+
Sbjct: 705 ARRRMI---SKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKM 761
Query: 710 S--VWSLLSKSDDIINQLSEKVQIETLKTYIFTYKRFYXXXXXXXXXXXFDLDIEKVLAV 767
+ VW L ++D + L K+Q E+L+TY+FTY Y F+LD+ V ++
Sbjct: 762 NGKVWDLFPEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSI 821
Query: 768 AQNIINDYEVKAKLDENNEYIIFERGEEITKLEEVAIKLVKE 809
+I + E+ A LD+ + ++ R E T + +A++L ++
Sbjct: 822 ISKMIINEELMASLDQPTQTVVMHRTEP-TAQQNLALQLAEK 862
Score = 68.6 bits (166), Expect = 4e-11
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 105 KKVVKSAKEKLLDEMKSIYQKIDSAEAQQDWESLLNHLETILKLYTKAQQ--QNYGTPNI 162
K+VV+SAK+K +E+ ++ + I +A +D L E + K Y KA+ G P
Sbjct: 46 KRVVRSAKDKRFEELTNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRF 105
Query: 163 FVKSLARFEDAVSATSQDEI----KNKAVARAYNTTKQRVKKLIRENETSVKAYRENPE- 217
+++ LA ED ++ +D+ NK A+A +T +Q+++K R+ E+ + +Y++NPE
Sbjct: 106 YIRILADLEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQ 165
Query: 218 ---------DFDKEPVLDADIDSRDVSATPF 239
+ D E D D D VSA F
Sbjct: 166 SADEDAEKNEEDSEGSSDEDEDEDGVSAATF 196
>7302740 [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 910
Score = 219 bits (557), Expect = 2e-56
Identities = 163/614 (26%), Positives = 289/614 (46%), Gaps = 60/614 (9%)
Query: 203 RENETSVKAYRENPEDFDKEPVLDADIDSRDVSATPFSLSGKKNLDLASVANNISELDFF 262
+E +T ++ E+ ED + E V+ + + P +D+ V + E
Sbjct: 264 KEQKTKIRKRAEDDEDGEWETVVKGHVVEK-----PKMFEKDAEIDVPLVLAKLLE---- 314
Query: 263 KTLNIIIDSRGKKNTDHTEQIKTTEELLKIAKT----PYEKICTYLNLIPIRFDASVSLS 318
I+ +RGKK TD QI EL I+ + + N+I +D + +S
Sbjct: 315 -----IMSARGKKRTDRRLQIDLLFELRDISDQHNLGTAVSVKIHFNIISAIYDYNQKIS 369
Query: 319 Y-QPLEQWKASKDNLDGLLEVLEQEIDHYQVTEFAPRNDFIEDEPEANEHGVKEILGSIF 377
LE W + + ++++L D ++ + +E E + G
Sbjct: 370 EPMKLEHWALLLEVMQSMMKLLLANADIIM-------SESVAEEHEEYATSPFYVRGCPL 422
Query: 378 SMVERLDDEFSKSLLNIDTRSSEYMERLRDEQSIYNLIIRSQLYFERVTAEEHRDRLLAR 437
+ VERLDDEF K L D S++Y+ RL+DE ++ I YFER R R
Sbjct: 423 AAVERLDDEFVKLLKECDPHSNDYVSRLKDEVNVVKTIELVLQYFERSGTNNER----CR 478
Query: 438 VFNRRLEHIYYKSDKLISIMETVAWKQIREGTASLESSFVRLNESDSADADYNFKVISEL 497
++ R++EH+YYK D + L+ L + S D V+ +L
Sbjct: 479 IYLRKIEHLYYKFDPEV-----------------LKKKRGELPATTSTSVD----VMDKL 517
Query: 498 SDFLIKQKSNNVFNYRKGTLYKTYYIALNQEYAPAKKIMLSSDIAKFISGSDAALQILYN 557
F+ + + R L Y+ A++ + A+ ++L S + I +D A +ILYN
Sbjct: 518 CKFIYAKDDTDRIRTR-AILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYN 576
Query: 558 RCVIQLGLAAFKAGLINECHQVLNGLCINPHLREILGQQSLQRANANSNVVQGAPVEQLC 617
R + LGL AF+ G + + H L L + +E+L Q L + + Q +Q
Sbjct: 577 RMMANLGLCAFRQGNVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQ 636
Query: 618 LPFHQHINLDLIDTVYMTCSLLLDVPHMAAYYSGIKVKRIPVFQKSIRRILESSEKAIFH 677
+PFH HINL+L++ VY+ ++LL++P++AA+ + + I K+ + L SSE+
Sbjct: 637 MPFHMHINLELLECVYLVSAMLLEIPYIAAHEFDARRRMI---SKTFYQQLRSSERQSLV 693
Query: 678 GPPETLRDHILYAAKSMQKGDYLQSIEYL----RKISVWSLLSKSDDIINQLSEKVQIET 733
GPPE++R+H++ AAK+M+ G++ ++ VW L +SD + L++ ++ E+
Sbjct: 694 GPPESMREHVVAAAKAMRCGNWQACANFIVNKKMNTKVWDLFYESDRVREMLTKFIKEES 753
Query: 734 LKTYIFTYKRFYXXXXXXXXXXXFDLDIEKVLAVAQNIINDYEVKAKLDENNEYIIFERG 793
L+TY+FTY Y ++L + KV ++ +I + E+ A LD+ +E + R
Sbjct: 754 LRTYLFTYSNVYTSISIPSLAQMYELPVPKVHSIISKMIINEELMASLDDPSETVGMHRS 813
Query: 794 EEITKLEEVAIKLV 807
E ++L+ +A++ V
Sbjct: 814 EP-SRLQALAMQFV 826
Score = 58.5 bits (140), Expect = 4e-08
Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 105 KKVVKSAKEKLLDEMKSIYQKIDSAEAQQDWESLLNHLETILKLYTKA-----QQQNYGT 159
K+VV+S KEK + + SI + I + + +D + L+ E + + Y KA +++N T
Sbjct: 41 KRVVRSTKEKRYENLTSIIKTIRNHKKIKDIPNTLSSFEDLTRAYQKALPVISKEENGIT 100
Query: 160 PNIFVKSLARFEDAVSATSQDEIKNKAV----ARAYNTTKQRVKKLIRENETSVKAYREN 215
P +++ LA ED ++ +D K + +++ T +Q+V+K I++ E + +RE
Sbjct: 101 PRFYIRCLAELEDFINEVWEDREGRKNLSKNNSKSLGTLRQKVRKYIKDFEDDLSRFREA 160
Query: 216 PE 217
P+
Sbjct: 161 PD 162
>CE18958 [J] KOG1076 Translation initiation factor 3 subunit c (eIF-3c)
Length = 898
Score = 214 bits (545), Expect = 4e-55
Identities = 169/662 (25%), Positives = 310/662 (46%), Gaps = 76/662 (11%)
Query: 171 EDAVSATSQDEIKNKAVARAYNTTKQRVKKLIRENETSVKAYRENPEDFDKEPVLDADID 230
+D S T ++++ + + + + KK ++ VK E +D D PV
Sbjct: 231 DDEDSVTKMEQLRRYFLKKEFRVESKDDKKEKKKRVIRVKEAVEEDDDADWTPV------ 284
Query: 231 SRDVSATPFSLSGKKNLDLASVANNISELDFFKTLNIIIDSRGKKNTDHTEQIKTTEELL 290
+R+ S F + D+ K LN ++ +RGK+ TD + + +LL
Sbjct: 285 NREKSVVHFDPKEEVTHDV-----------MIKKLNEVMSARGKRTTDRNQHVANLRKLL 333
Query: 291 KIAKTPYEKICTYLN------LIPIRFDASVSLS-YQPLEQWKASKDNLDGLLEVLEQEI 343
++++ +++ +N +I F+ + +S + E + + ++ LL++L
Sbjct: 334 EVSEE--KELGLGINVKISFCIISALFELNAKISDHMEYETFMTTLQTVNSLLDLLIGTD 391
Query: 344 DHYQVTEFAPRNDFIEDEPEANEHGVKEILGSIFSMVERLDDEFSKSLLNIDTRSSEYME 403
+A ++ ++D+ + I GSI V+RLD E +K L N D S++Y+E
Sbjct: 392 RVKLSVTYAEEDENLKDDTQEYR-----IQGSILIAVQRLDGELAKILQNADCHSNDYIE 446
Query: 404 RLRDEQSIYNLIIRSQLYFERVTAEEHRDRL-LARVFNRRLEHIYYKSDKLISIMETVAW 462
+L+ E+ + +LI +++ Y E D+ + +V+ R+EH YYK
Sbjct: 447 KLKAEKDMCSLIEKAEKYVELRNDSGIFDKHEVCKVYMMRIEHAYYK------------- 493
Query: 463 KQIREGTASLESSFVRLNESDSADA-DYNFKVISELSDFLIKQKSNNVFNYRKGTLYKTY 521
+ NE D+ DY I L D +K ++ L Y
Sbjct: 494 -------------YQDQNEEDAGKLMDYLCNKIYTLDD----EKRLR----QRAMLCHVY 532
Query: 522 YIALNQEYAPAKKIMLSSDIAKFISGSDAALQILYNRCVIQLGLAAFKAGLINECHQVLN 581
Y+A++ ++ A+ ++L S + + SD QILYNR + QLGL AF+ G I E HQ L+
Sbjct: 533 YLAVHDKWHRARDLLLMSHMQAIVDHSDVDTQILYNRTICQLGLCAFRHGFIREAHQGLS 592
Query: 582 GLCINPHLREILGQQSLQRANANSNVVQGAPVEQLCLPFHQHINLDLIDTVYMTCSLLLD 641
+ +E+L Q R + Q +P+H HIN++L++ VY+ CS+LL+
Sbjct: 593 EIQNTQRAKELLAQAVGTRQH-EKTAEQEKIDRSRQVPYHMHINVELMECVYLICSMLLE 651
Query: 642 VPHMAAYYSGIKVKRIPVFQKSIRRILESSEKAIFHGPPETLRDHILYAAKSMQKGDYLQ 701
+PHMA+ ++ + + +S L+ SEKA GPPE R+H++ A+K+M GD+ +
Sbjct: 652 IPHMASCEFEMRRR---MLSRSFHYQLKQSEKASLTGPPENTREHVVAASKAMLNGDWKK 708
Query: 702 SIEYL----RKISVWSLLSKSDDIINQLSEKVQIETLKTYIFTYKRFYXXXXXXXXXXXF 757
+Y+ VW+L ++ + + ++Q E+L+TY+ TY Y F
Sbjct: 709 CQDYIVNDKMNQKVWNLFHNAETVKGMVVRRIQEESLRTYLLTYSTVYATVSLKKLADLF 768
Query: 758 DLDIEKVLAVAQNIINDYEVKAKLDENNEYIIFERGEEITKLEEVAIKLVKETKYHSERL 817
+L + V ++ +I E+ A LDE + +I R E ++L+ +A+ L + + +E
Sbjct: 769 ELSKKDVHSIISKMIIQEELSATLDEPTDCLIMHRVEP-SRLQMLALNLSDKLQTLAENN 827
Query: 818 RQ 819
Q
Sbjct: 828 EQ 829
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,544,251
Number of Sequences: 60738
Number of extensions: 1724459
Number of successful extensions: 5858
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5798
Number of HSP's gapped (non-prelim): 12
length of query: 819
length of database: 30,389,216
effective HSP length: 115
effective length of query: 704
effective length of database: 23,404,346
effective search space: 16476659584
effective search space used: 16476659584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)