ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactVI0845 good U KOG3998 Intracellular trafficking, secretion, and vesicular transport Putative cargo transport protein ERV29
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactVI0845 288860 287946 -305
(305 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR284c [U] KOG3998 Putative cargo transport protein ERV29 374 e-104
SPCC970.06 [U] KOG3998 Putative cargo transport protein ERV29 173 2e-43
Hs19557691 [U] KOG3998 Putative cargo transport protein ERV29 134 2e-31
CE06987 [U] KOG3998 Putative cargo transport protein ERV29 133 4e-31
7300004 [U] KOG3998 Putative cargo transport protein ERV29 132 8e-31
CE13058 [U] KOG3998 Putative cargo transport protein ERV29 103 3e-22
>YGR284c [U] KOG3998 Putative cargo transport protein ERV29
Length = 310
Score = 374 bits (960), Expect = e-104
Identities = 189/310 (60%), Positives = 234/310 (74%), Gaps = 5/310 (1%)
Query: 1 MSFRG--NNLDTFP--TAKPGFQGASYGQASQSHNVSAKDK-YRRLFEQFAKRVEDLTEH 55
MS+RG N P +++ + G + +++Q+ + S K ++ FE+FA R+E LT++
Sbjct: 1 MSYRGPIGNFGGMPMSSSQGPYSGGAQFRSNQNQSTSGILKQWKHSFEKFASRIEGLTDN 60
Query: 56 PLVLKIRPYTPIIARFFIVATFYEDSLRIIAQWSDQVFYLWNYRHFPYYXXXXXXXXXXI 115
+V K++PY P ++RFFIVATFYEDS RI++QWSDQ+FYL ++H+PY+ +
Sbjct: 61 AVVYKLKPYIPSLSRFFIVATFYEDSFRILSQWSDQIFYLNKWKHYPYFFVVVFLVVVTV 120
Query: 116 SMFTGATLLILRKQTVYATSALICTVILQGLVYGLFTGSSFVLRNISVIGGLLIAFGDSI 175
SM GA+LL+LRKQT YAT L VI Q LVYGLFTGSSFVLRN SVIGGLLIAF DSI
Sbjct: 121 SMLIGASLLVLRKQTNYATGVLCACVISQALVYGLFTGSSFVLRNFSVIGGLLIAFSDSI 180
Query: 176 VTNRMTFGMLPELDSKDGKFKNYLLLAGRILMVLLFITFTFTKSWLTVLLTIAGTVCIAI 235
V N+ TFGMLPEL+SK+ K K YLL AGRIL+VL+FI FTF+KSW TV+LTI GT+C AI
Sbjct: 181 VQNKTTFGMLPELNSKNDKAKGYLLFAGRILIVLMFIAFTFSKSWFTVVLTIIGTICFAI 240
Query: 236 GYKTKFASISLGLILAFYNITVNNYWFYGSSKRDFLKYEFYQNLSXXXXXXXXXNTGAGQ 295
GYKTKFASI LGLIL FYNIT+NNYWFY ++KRDFLKYEFYQNLS NTGAG+
Sbjct: 241 GYKTKFASIMLGLILTFYNITLNNYWFYNNTKRDFLKYEFYQNLSIIGGLLLVTNTGAGE 300
Query: 296 LSIDEKKKIY 305
LS+DEKKKIY
Sbjct: 301 LSVDEKKKIY 310
>SPCC970.06 [U] KOG3998 Putative cargo transport protein ERV29
Length = 302
Score = 173 bits (439), Expect = 2e-43
Identities = 92/253 (36%), Positives = 141/253 (55%), Gaps = 12/253 (4%)
Query: 63 PYTPIIARFFIVATFYEDSLRIIAQWSDQVFYLWNYRHFPYYXXXXXXXXXXISMFTGAT 122
PY P++ RF IVAT++ED++RI+ QW +QV Y+ +YR F + + M G+T
Sbjct: 52 PYMPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLLLFVCVVLMLVGST 111
Query: 123 LLILRKQTVYATSALICTVILQGLVYGLFTGSSFVLRNISVIGGLLIAFGDSIVTNRMT- 181
L++ +K+ YA +L+ +LQ YGL T RN+SVIGGL + D+ + R+
Sbjct: 112 LVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGLCLVASDTFIHRRINR 171
Query: 182 FGMLPELDSKDGKFKNYLLLAGRILMVLLFITFTFTK----SWLTVL---LTIAGTVCIA 234
F LP + + + Y LAGR+L++ +F+ + SW +L L++ +
Sbjct: 172 FAGLPAVSEHNK--RTYFQLAGRVLLIFMFLGLLAKEGSGISWTRILVHILSVTACAMVV 229
Query: 235 IGYKTKFASISLGLILAFYNITVNNYWFY--GSSKRDFLKYEFYQNLSXXXXXXXXXNTG 292
IG+K KF + L LIL+ N +N++W S RDF +Y+F+Q LS NTG
Sbjct: 230 IGFKAKFFAAVLVLILSVANFIINSFWSVPRESPYRDFYRYDFFQTLSIVGGLLYLVNTG 289
Query: 293 AGQLSIDEKKKIY 305
G+ S+DEKKKIY
Sbjct: 290 PGKFSVDEKKKIY 302
>Hs19557691 [U] KOG3998 Putative cargo transport protein ERV29
Length = 269
Score = 134 bits (336), Expect = 2e-31
Identities = 79/248 (31%), Positives = 130/248 (51%), Gaps = 8/248 (3%)
Query: 62 RPYTPIIARFFIVATFYEDSLRIIAQWSDQVFYLWNYRHFPYYXXXXXXXXXXISMFTGA 121
+ Y P +AR +++TF ED +R+ QWS+Q Y+ + Y + TG
Sbjct: 22 KQYLPHVARLCLISTFLEDGIRMWFQWSEQRDYIDTTWNCGYLLASSFVFLNLLGQLTGC 81
Query: 122 TLLILRKQTVYATSALICTVILQGLVYGLFTGSSFVLRNISVIGGLLIAFGDSIVTNRMT 181
L++ R YA L + LQ + Y + F++RN+++ GGLL+ +S +
Sbjct: 82 VLVLSRNFVQYACFGLFGIIALQTIAYSILWDLKFLMRNLALGGGLLLLLAESRSEGKSM 141
Query: 182 FGMLPELDSKDGKFKNYLLLAGRILMVLLFITFT-FTKSWLTVLLTIAGT---VCIAIGY 237
F +P + ++ K Y+ L GR+L+VL+F+T F S+ +++ I GT + +AIG+
Sbjct: 142 FAGVPTM--RESSPKQYMQLGGRVLLVLMFMTLLHFDASFFSIVQNIVGTALMILVAIGF 199
Query: 238 KTKFASISLGLILAFYNITVNNYWFYGSSK--RDFLKYEFYQNLSXXXXXXXXXNTGAGQ 295
KTK A+++L + L N+ N +W K DFLKY+F+Q +S G G
Sbjct: 200 KTKLAALTLVVWLFAINVYFNAFWTIPVYKPMHDFLKYDFFQTMSVIGGLLLVVALGPGG 259
Query: 296 LSIDEKKK 303
+S+DEKKK
Sbjct: 260 VSMDEKKK 267
>CE06987 [U] KOG3998 Putative cargo transport protein ERV29
Length = 277
Score = 133 bits (334), Expect = 4e-31
Identities = 84/262 (32%), Positives = 135/262 (51%), Gaps = 8/262 (3%)
Query: 48 RVEDLTEHPLVLKIRPYTPIIARFFIVATFYEDSLRIIAQWSDQVFYLWNYRHFPYYXXX 107
+ ED E K R Y P IAR +V+TF ED +R+ QW DQ ++ ++
Sbjct: 16 KAEDAAED-FFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGWFIAT 74
Query: 108 XXXXXXXISMFTGATLLILRKQTVYATSALICTVILQGLVYGLFTGSSFVLRNISVIGGL 167
F +++LRK+ + A L VILQ + Y + F+ RNI+V GGL
Sbjct: 75 LFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAVGGGL 134
Query: 168 LIAFGDSIVTNRMTFGMLPELDSKDGKFKNYLLLAGRILMVLLFITFT-FTKSWLTVLLT 226
L+ ++ F +P + + K K+Y+LLAGR+L++ +F++ F S++ VL
Sbjct: 135 LLLLAETQEEKASLFAGVPTMGDSN-KPKSYMLLAGRVLLIFMFMSLMHFEMSFMQVLEI 193
Query: 227 IAG---TVCIAIGYKTKFASISLGLILAFYNITVNNYWFYGSSK--RDFLKYEFYQNLSX 281
+ G ++IGYKTK ++I L + L N+ +N +W S + RDF+KY+F+Q +S
Sbjct: 194 VVGFALITLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTIPSDRFYRDFMKYDFFQTMSV 253
Query: 282 XXXXXXXXNTGAGQLSIDEKKK 303
G G +S+D+ KK
Sbjct: 254 IGGLLLVIAYGPGGVSVDDYKK 275
>7300004 [U] KOG3998 Putative cargo transport protein ERV29
Length = 270
Score = 132 bits (331), Expect = 8e-31
Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 9/266 (3%)
Query: 44 QFAKRVEDLTEHPLVLKIRPYTPIIARFFIVATFYEDSLRIIAQWSDQVFYLWNYRHFPY 103
++ + ED+ E ++ + + P +AR ++ATF+ED LR+ QW++Q Y+
Sbjct: 6 EYIAKTEDVAEQ-VIKRGKNVLPTVARLCLIATFFEDGLRMYIQWNEQREYMDMSWGCGK 64
Query: 104 YXXXXXXXXXXISMFTGATLLILRKQTVYATSALICTVILQGLVYGLFTGSSFVLRNISV 163
+ + G +++ R + A L V+LQ + Y + F+LRN ++
Sbjct: 65 FLATVFVLVNLLGQLGGCGMVMARFKVDIAVGLLFFIVVLQTVAYSILWDFQFLLRNFAL 124
Query: 164 IGGLLIAFGDSIVTNRMTFGMLPELDSKDGKFKNYLLLAGRILMVLLFIT-FTFTKSWLT 222
IG LL+ ++ + R F +P + + K KN++ LAGRIL+ +FIT F S
Sbjct: 125 IGALLLVLAEARIEGRSLFAGVPSMG--ENKPKNFMQLAGRILLAFMFITLIRFELSVWQ 182
Query: 223 VLLTIAGT---VCIAIGYKTKFASISLGLILAFYNITVNNYWFYGSSK--RDFLKYEFYQ 277
V+ I G+ V + +GYKTK +++ L +L N+ N +W S K RDFLKY+F+Q
Sbjct: 183 VIQDIIGSILMVLVVLGYKTKLSALILVALLTILNLYHNAWWTIPSYKPLRDFLKYDFFQ 242
Query: 278 NLSXXXXXXXXXNTGAGQLSIDEKKK 303
LS + G G +S+DE KK
Sbjct: 243 TLSVIGGLLMIVSLGPGGVSMDEHKK 268
>CE13058 [U] KOG3998 Putative cargo transport protein ERV29
Length = 269
Score = 103 bits (257), Expect = 3e-22
Identities = 70/262 (26%), Positives = 127/262 (47%), Gaps = 9/262 (3%)
Query: 48 RVEDLTEHPLVLKIRPYTPIIARFFIVATFYEDSLRIIAQWSDQVFYLWNYRHFPYYXXX 107
R ED TE L R P I R +++TF ED LR++ D V + Y+
Sbjct: 9 RCEDYTE-TLARNTRKVLPTIGRLLLISTFVEDGLRLLFNTHDHVNHFSYNWGLNYHFSL 67
Query: 108 XXXXXXXISMFTGATLLILRKQTVYATSALICTVILQGLVYGLFTGSSFVLRNISVIGGL 167
I++ G+ +++R + +++ L T+ Q ++Y L+T + RNIS++ +
Sbjct: 68 FLTIVMIINLLFGSLFVMMRYKVTESSAVLGFTIFAQVILYQLYTTYHLLTRNISIVAAI 127
Query: 168 LIAFGDSIV--TNRMTFGMLPELDSKDGKFKNYLLLAGRILMVLLFITFT-FTKSWLTVL 224
++ ++++ + LP D + + + LL A R+ + L+ I+ F S+ +L
Sbjct: 128 MLLVAENMLRKPKPANYTQLPR-DEHEIEVTSVLLAACRVCLNLMLISMVHFDMSYTRIL 186
Query: 225 LTIAG---TVCIAIGYKTKFASISLGLILAFYNITVNNYWFYGSSKRDFLKYEFYQNLSX 281
L I + + +G+KT+ S L L YNI +N++W ++ ++Y+F+Q LS
Sbjct: 187 LCIISYGMMIFVWLGFKTRMMSFMLATWLFAYNIVLNDFW-NKDAELHIIRYDFFQTLSA 245
Query: 282 XXXXXXXXNTGAGQLSIDEKKK 303
+TG G+ S DE KK
Sbjct: 246 IGGLLLLIHTGPGEFSFDELKK 267
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.327 0.142 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,235,655
Number of Sequences: 60738
Number of extensions: 607256
Number of successful extensions: 1829
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1807
Number of HSP's gapped (non-prelim): 6
length of query: 305
length of database: 30,389,216
effective HSP length: 106
effective length of query: 199
effective length of database: 23,950,988
effective search space: 4766246612
effective search space used: 4766246612
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)